Citrus Sinensis ID: 043572
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WUH2 | 860 | Transforming growth facto | yes | no | 0.814 | 0.944 | 0.229 | 6e-35 | |
| A4IG72 | 863 | Transforming growth facto | yes | no | 0.715 | 0.826 | 0.253 | 8e-35 | |
| Q3UR70 | 860 | Transforming growth facto | yes | no | 0.641 | 0.744 | 0.233 | 5e-33 | |
| A7MB11 | 859 | Transforming growth facto | yes | no | 0.752 | 0.873 | 0.236 | 6e-31 | |
| Q96JC1 | 886 | Vam6/Vps39-like protein O | no | no | 0.685 | 0.770 | 0.222 | 8e-20 | |
| Q8R5L3 | 886 | Vam6/Vps39-like protein O | no | no | 0.685 | 0.770 | 0.219 | 9e-19 | |
| O13955 | 905 | Vacuolar morphogenesis pr | yes | no | 0.247 | 0.272 | 0.249 | 3e-10 | |
| Q54EH3 | 1031 | GTPase-activating protein | no | no | 0.147 | 0.142 | 0.268 | 0.0008 |
| >sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 223/970 (22%), Positives = 383/970 (39%), Gaps = 158/970 (16%)
Query: 32 LSISPISDCQVLIYIGTQSGSL--ILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89
++I + C +Y+GT + LL P A T Q+H+ F K
Sbjct: 25 VNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGPATFTATKQLQRHLGFKK------- 77
Query: 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNL 149
PV + + ++L+L CD + L + L +P+ +KG + A
Sbjct: 78 PVNELRAASALNRLLVL-CDNSISLVNMLNLEPVPSGARIKGAATFA------------- 123
Query: 150 LENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIE 209
L N VS + C V + + +R + +
Sbjct: 124 LNENPVSG------------------------------DPFCV--EVCIISVKRRTIQMF 151
Query: 210 LVNGSFV-ILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPP 268
LV V I+KE+ + + + + Y + + TG S +F PP
Sbjct: 152 LVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPP 211
Query: 269 MLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELY 328
++K + +++ +L +G+F G + + ++ YV+ L + ++
Sbjct: 212 IVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVH 271
Query: 329 HKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRK 388
Q + F EG I D E G++ +VAT V +P E+QI+DLL
Sbjct: 272 SMLDQQQKQTLPFK-EGH---ILQDFE---GRV-IVATSKGVYILVPLPLEKQIQDLLAS 323
Query: 389 KDFKEAISLAE--ELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSE--TMQP 444
+ +EA+ LA+ E + M + Q GF+ L F EA + F + +
Sbjct: 324 RRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVREL 383
Query: 445 SEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVD 504
++PF LL + + HPP D+ N L T D
Sbjct: 384 ISLYPF---------LLPTSSSFTRSHPPLHEYADL--NQL---------------TQGD 417
Query: 505 DGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHD-ME 563
E + R + YL R E+ KE +DT L+ LY + HD +
Sbjct: 418 Q----------EKMAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEAD--HDSLL 465
Query: 564 NLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPA 623
+L +EN C++ + L++ L LY + A+ +W N +G +D +
Sbjct: 466 DLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWV----NIVNGDVQD-S 520
Query: 624 VENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTS--- 680
+DL + D ++ DE+L+ + W+ + + V+V T
Sbjct: 521 TRSDLYEYIVDFLT--------------YCLDEELVWAYADWVLQKSEEVGVQVFTKRPL 566
Query: 681 -EKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFE 739
E++ N +PD +I + K + L +YL+ L+ D+ ++HT A+ + +
Sbjct: 567 DEQQKNSFNPDDIINCL-KKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRA 625
Query: 740 EESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL 799
SG A T+ Q +L+ LQ SDLY +L+ ++G+ L +
Sbjct: 626 SASGKGAEATE------------------TQAKLRRLLQKSDLYRVHFLLERLQGAGLPM 667
Query: 800 EKAILYRKLGQETLVLQILALKLEDSEAAEQYC--AEIGRPDAYMQ-----LLDMYLDSQ 852
E AIL+ KLG+ L IL +L+D AAE YC GR + Q LL +YL +
Sbjct: 668 ESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAG 727
Query: 853 DGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIV 912
+ AAV LL+ H D QVL+ L +QL ++ +R +H R Q+
Sbjct: 728 PTAHELAVAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVA 787
Query: 913 HNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCY--R 970
L+R+ ++ +++ + +Q++D+ LC C +F YP+ +V C R
Sbjct: 788 LGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVHTHCAASR 847
Query: 971 RQGESTSITG 980
S+S G
Sbjct: 848 HTNPSSSSPG 857
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Plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling. May recruit SMAD4 to the vicinity of the receptor complex and facilitate its interaction with receptor-regulated Smads, such as SMAD2. Homo sapiens (taxid: 9606) |
| >sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 209/825 (25%), Positives = 343/825 (41%), Gaps = 112/825 (13%)
Query: 177 IKANGVKVKEEEQHCRGDN----------VFAVIIGKRLVLIELVNGSFV-ILKEIQCMD 225
+ G K+K C +N + V+ +R V I V+ V +LKE+ +
Sbjct: 109 VPTGGAKLKGVTAFCINENPVTGDAFCVEMAVVLARRRAVQICTVHEDRVQMLKEVTTPE 168
Query: 226 GVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDN 285
+ +I + Y + + TG S +F P++K + +E+ +L
Sbjct: 169 QPCALSLDGYNICLALSTQYMILNYSTGASQDLFPYDCEERKPIVKRIGREEFLLAAPGG 228
Query: 286 VGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEG 345
+G+F +A G + + ++ A YVV L G + ++ Q ++F
Sbjct: 229 LGMFANAEGISQRAPVSWSENVIAAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRD-- 286
Query: 346 GGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEG 405
GQ + E GK+ VVA+ V +P E QI+DLL +EA++L E +
Sbjct: 287 -GQLLQDFE----GKV-VVASSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEA--AQR 338
Query: 406 EMAKEMLSFVHAQI----GFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLL 461
+ KE +H +I GF+ L F EA +HF + +V I P LL
Sbjct: 339 NIPKEKYQILHRRILQQAGFIQFGQLQFLEAKEHFRKGQL----DVRELISLYP----LL 390
Query: 462 VP-RNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
+P + + HPP D+ N L T D E ++
Sbjct: 391 LPASSSFTRCHPPLHEFADL--NHL---------------TQGDQ----------EKVQR 423
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
R + YL R ++ E VDT L+ LY A + +L SEN+C++ +
Sbjct: 424 FKRFLISYLHEVRSSDIANGFHEDVDTALLKLY-AETSHESLLDLLASENACLLADSAPW 482
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L++ L LY G + AL +W + +G +D + DL + D +S
Sbjct: 483 LEKHHKYYALGLLYHYNGQDAAALQMWVKIV----NGDLQD-STRPDLFEYVVDFLSF-- 535
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLT----SEKRINQLSPDKVIAAI 696
S+ DL+ +H W + + V++ T SE+R QL+ D VI +
Sbjct: 536 ------------CSNLDLVWRHADWALQKDQKIGVQIFTKRPTSEERRGQLNADDVITYL 583
Query: 697 DSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRS 756
K + L YL+ L+ ++ ++HT A+ A+ + S S+ Q+ R
Sbjct: 584 -QKHSQALLLYLEHLVLEKKLQKEKYHTHLAVLYAEKVLGLISRPSTSE---EQLSAAR- 638
Query: 757 SGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWL-EKAILYRKLGQETLVL 815
++LQ L+ S+LY + +L I+ SEL L E+A L+ KL + L
Sbjct: 639 --------------QKLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHGKLEEHDKAL 684
Query: 816 QILALKLEDSEAAEQYCAEIG-------RPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHN 868
+L +L+DS AAE+YC+ R + + QLL +YLD AAV LL+
Sbjct: 685 HVLVHQLKDSSAAEEYCSWASASQDSSYRQNLFHQLLSVYLDPDVPGGAQTVAAVDLLNR 744
Query: 869 HGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARL 928
H E D ++VL+ L D L L + +RA +H Q+ L+RA ++ RL
Sbjct: 745 HAEVFDAVRVLKLLPEDWSLPLLRPFLCGAMRATVHARCTSQVALGLARAQNLQLLHDRL 804
Query: 929 EERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG 973
+ R V ++++ C CH A P T V C ++
Sbjct: 805 KYRGGPVLVSEKKGCQLCHNTFSEPDCACLPGGTPVHINCVAKKA 849
|
Plays a role in the TGF-beta signaling pathway. Danio rerio (taxid: 7955) |
| >sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 173/740 (23%), Positives = 306/740 (41%), Gaps = 100/740 (13%)
Query: 245 YSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFR 304
Y + + TG S +F PP++K + +++ +L +G+F G + +
Sbjct: 188 YIILNYSTGLSQDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWS 247
Query: 305 KSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVV 364
++ YV+ L + ++ Q + F EG I D E G++ +V
Sbjct: 248 ENVIGAAVCFPYVIALDDEFITVHSMLDQQQKQTLPFK-EGH---ILQDFE---GRV-IV 299
Query: 365 ATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE--ELECEGEMAKEMLSFVHAQIGFL 422
AT V +P E+QI+DLL + +EA+ LA+ E + M + Q GF+
Sbjct: 300 ATSKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFI 359
Query: 423 LLFDLHFEEAVDHFLHSE--TMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDV 480
L F EA + F S+ + ++PF LL + + HPP D+
Sbjct: 360 QFAQLQFLEAKELFRSSQLDVRELISLYPF---------LLPTSSSFTRSHPPLHEYADL 410
Query: 481 VDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540
N L T D E + R + YL R E+
Sbjct: 411 --NQL---------------TQGDQ----------EKMAKCKRFLMSYLNEIRSTEVANG 443
Query: 541 VKEGVDTLLMYLYRALNRVHD-MENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGM 599
KE +DT L+ LY + HD + +L +EN C++ + L++ L LY
Sbjct: 444 YKEDIDTALLKLYAEAD--HDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNKQ 501
Query: 600 SSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLI 659
+ A+ +W N +G +D + +DL + D ++ D++L+
Sbjct: 502 DASAVQLWV----NIVNGDIQD-STRSDLYEYIVDFLT--------------YCLDQELV 542
Query: 660 LQHLGWIADINAVLAVKVLTS----EKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQ 715
H W+ + + V++ T E++ +PD +I+++ K + L +YL+ L+ D+
Sbjct: 543 WTHADWLLQKSEEIGVQIFTKRPLDEQQQTSFNPDNIISSL-KKYPKALVKYLEHLVIDR 601
Query: 716 DSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQI 775
++HT A+ + + G T+ Q +L+
Sbjct: 602 RLQKEEYHTHLAILYLEEVLRQRVSTGGKDVEATE------------------TQAKLRR 643
Query: 776 FLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC--- 832
LQ SDLY + + ++G+ L +E AIL+ KLG+ L IL ++ D AAE YC
Sbjct: 644 LLQKSDLYRVHLLKEKVQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAEDYCLWS 703
Query: 833 ----AEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPL 888
R + LL MYL + + + AAV LL++H D QVL+ L +
Sbjct: 704 SEGQGAACRQRLFHTLLAMYLRAGPSAQDLTVAAVDLLNHHAREFDVTQVLQLLPDTWSV 763
Query: 889 QLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHA 948
QL ++ +R +H R Q+ L+++ ++ +++ + V++++ LC C
Sbjct: 764 QLLCPFLMGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGNAVRLSERELCQLCQN 823
Query: 949 RLGTKLFAMYPDDTIVCYKC 968
G +F YP+ +V C
Sbjct: 824 PFGEPVFVRYPNGGLVHTHC 843
|
Plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling. May recruit SMAD4 to the vicinity of the receptor complex and facilitate its interaction with receptor-regulated Smads, such as SMAD2. Mus musculus (taxid: 10090) |
| >sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 205/867 (23%), Positives = 354/867 (40%), Gaps = 117/867 (13%)
Query: 124 KKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183
+ LGF K +S +R + + S L+ + SL + + L+ SG + G
Sbjct: 71 RHLGFKKAVS----ELRAASALSRLLVLCDGCISLVHMLS------LEPVPSGARIKGAT 120
Query: 184 VKE-EEQHCRGD----NVFAVIIGKRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLNDSI 237
E GD V + + +R + + LV V I++E+ + + +
Sbjct: 121 AFALNENPVSGDPFCVEVCIISVKRRTIQVFLVYEDRVQIVREVSTPEQPLAVAVDGHFL 180
Query: 238 IVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPV 297
+ Y + + TG + +F P++K + +++ +L +G+F G +
Sbjct: 181 CLALTTQYIILNYSTGAAQDLFPFCSEERRPIVKRIGRQEFLLAGPGGLGMFATVAG--I 238
Query: 298 GGSLVFRKSPDAVGELSM--YVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEE 355
R S + +G YVV L + ++ Q + F EG I D E
Sbjct: 239 SQRAPVRWSENVIGAAVCFPYVVALDDEFITVHSMLDQQQKQTLPFK-EGH---ILQDFE 294
Query: 356 CGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE--ELECEGEMAKEMLS 413
G++ +VAT V +P E++I+DLL +EA+ LA+ E + M
Sbjct: 295 ---GRV-IVATSKGVYILVPLPLEKRIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYR 350
Query: 414 FVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVP-RNRYWGLHP 472
+ Q GF+ L F +A + F S + E+ + LL+P + + HP
Sbjct: 351 RILLQAGFIQFAQLQFLKAKELF-RSGQLDVRELISL-------YPLLLPTSSSFTRSHP 402
Query: 473 PPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVS 532
P D+ N L T D ++ R + YL
Sbjct: 403 PLHEFADL--NQL---------------TQGDQDKVAK----------CKRFLMSYLNEV 435
Query: 533 RKKELTILVKEGVDTLLMYLYRALNRVHD-MENLAPSENSCIVEELETLLDESGHLRTLA 591
R E+ KE +DT L+ LY + HD + +L +EN C++ + L++ L
Sbjct: 436 RSTEVANGYKEDIDTALLKLYAEAD--HDSLLDLLVTENFCLLPDSAAWLEKHKKYFALG 493
Query: 592 FLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILE 651
LY + A+ +W + +G +D + +DL + D L
Sbjct: 494 LLYHYNHQDAAAVQLWVSIV----NGDIQD-STRSDLYEYIVD--------------FLT 534
Query: 652 ESSDEDLILQHLGWIADINAVLAVKVLTS---EKRINQLSPDKVIAAIDSKKVEILQRYL 708
S+D DL+ +H W+ + + V+V T +++ + +PD +I+ + K + L +YL
Sbjct: 535 YSTDPDLVWRHADWVLQRSQEVGVQVFTKRPLDEQQSGFNPDDIISCL-KKYPQALVKYL 593
Query: 709 QWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCP 768
+ L+ ++ ++HT A+ E ++ + ++ ET
Sbjct: 594 EHLVTERRLQKEEYHTHLAVLYLD---EVLQQRPCTPDKDAEVTET-------------- 636
Query: 769 VQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAA 828
Q +L+ LQ SDLY ++D G+ L LE AIL+ KL Q L IL +L D AA
Sbjct: 637 -QAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAILHGKLEQHEEALHILVHELADFPAA 695
Query: 829 EQYC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLET 881
E YC GR Y Q LL +YL AAV LL+ H D QVL+
Sbjct: 696 EDYCLWRSEGRDPPYRQRLFHLLLAVYLGPGPAAPARTVAAVDLLNRHAVEFDAAQVLQL 755
Query: 882 LSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDES 941
L +QL ++ +R +H R Q+ L+R+ ++ + +++ + V+++DE
Sbjct: 756 LPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLIYKYDKMKLKGSSVRLSDEK 815
Query: 942 LCDSCHARLGTKLFAMYPDDTIVCYKC 968
LC C +F YP+ +V C
Sbjct: 816 LCQMCQNPFLEPVFVRYPNGGLVHTHC 842
|
Plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling. May recruit SMAD4 to the vicinity of the receptor complex and facilitate its interaction with receptor-regulated Smads, such as SMAD2. Bos taurus (taxid: 9913) |
| >sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 172/774 (22%), Positives = 304/774 (39%), Gaps = 91/774 (11%)
Query: 225 DGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLV 283
D K+M W +SI VG Y L V G+ + P P++ L+ + KV +
Sbjct: 165 DVPKSMAWCENSICVGFKRDYYLIR-VDGKGSIKELFPTGKQLEPLVAPLA-DGKVAVGQ 222
Query: 284 DNVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342
D++ V ++ G +L + P A+ Y++ + +E+ + + VQ++
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQ 282
Query: 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELE 402
+ I + G ++ VA+ V VP QI+ LL+ K F+ A+ LAE +
Sbjct: 283 R---PRFITS----GGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKD 335
Query: 403 CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHF--LHSETMQPSEVFPFIMRDPNRWSL 460
++ + + F L F+E++ F L ++ ++P ++ R L
Sbjct: 336 DSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQL 395
Query: 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
P +P PV ++ +A+ + +++ + ++D + S + L+E
Sbjct: 396 QYP-------NPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDS--DHQSSTSPLME- 445
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
I S+KK L I +DT L+ Y N L N C +EE E +
Sbjct: 446 GTPTIK-----SKKKLLQI-----IDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHV 495
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L ++ L LY KG+ KAL + L N L G + +
Sbjct: 496 LKKAHKYSELIILYEKKGLHEKALQV-----------LVDQSKKANSPLKGHERTVQYLQ 544
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSE-KRINQLSPDKVIAAIDSK 699
TE + LI + W+ +K+ T + + L D+V+ +
Sbjct: 545 HLGTE---------NLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIEN 595
Query: 700 KVEILQRYLQWLIEDQDSDDTQFHT----LYA---LSLAKSAIEAFEEESGSKAFGTQMG 752
+ YL+ +I + ++FH LY L K + +F +G
Sbjct: 596 FKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSF--PAGKTPVPAGEE 653
Query: 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQET 812
E Y +++L +FL+ S YDP ++ L E+A+L ++G+
Sbjct: 654 EGELGEY----------RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHE 703
Query: 813 LVLQILALKLEDSEAAEQYCAEI------GRPDAYMQLLDMYLDSQDGK----------E 856
L I L+D+ AE+YC + G D Y+ LL MYL E
Sbjct: 704 QALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLE 763
Query: 857 PM--FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHN 914
P +AA+++L H LD + L L + + + ++L R Q++ N
Sbjct: 764 PKANLQAALQVLELHHSKLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKN 823
Query: 915 LSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
L A + + R+ + I +E +C C ++G FA YP+ +V Y C
Sbjct: 824 LLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFC 877
|
May play a role in clustering and fusion of late endosomes and lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 170/774 (21%), Positives = 303/774 (39%), Gaps = 91/774 (11%)
Query: 225 DGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLV 283
D K+M W +SI VG Y L V G+ + P P++ L+ + KV +
Sbjct: 165 DVPKSMAWCENSICVGFKRDYYLIR-VDGKGSIKELFPTGKQLEPLVAPLA-DGKVAVGQ 222
Query: 284 DNVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342
D++ V ++ G +L + P A+ Y+V + +E+ + + VQ++
Sbjct: 223 DDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLLVQSIELQ 282
Query: 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELE 402
+ I + G ++ VA+ V VP QI+ LL+ K F+ A+ LAE +
Sbjct: 283 R---PRFITS----GGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKD 335
Query: 403 CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHF--LHSETMQPSEVFPFIMRDPNRWSL 460
++ + + F L F+E++ F L ++ ++P ++ R L
Sbjct: 336 DSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQL 395
Query: 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
P +P P ++ +A+ + +++ + ++D + S + L+E
Sbjct: 396 QYP-------NPLPTLSGAELEKAHLALIDYLTQKRSQLVKKLNDS--DHQSSTSPLME- 445
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
I S+KK L I +DT L+ Y N L N C +EE E +
Sbjct: 446 GTPTIK-----SKKKLLQI-----IDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHV 495
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
L ++ L LY KG+ KAL + L N L G + +
Sbjct: 496 LKKAHKYSELIILYEKKGLHEKALQV-----------LVDQSKKANSPLKGHERTVQYLQ 544
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSE-KRINQLSPDKVIAAIDSK 699
TE + LI + W+ +K+ T + + L D+V+ +
Sbjct: 545 HLGTE---------NLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIEN 595
Query: 700 KVEILQRYLQWLIEDQDSDDTQFHT----LYA---LSLAKSAIEAFEEESGSKAFGTQMG 752
+ YL+ +I + +QFH LY SL K + + +G
Sbjct: 596 FKALAIPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSL--PTGKSPVPAGEE 653
Query: 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQET 812
Y +++L +FL+ S YDP ++ L E+A+L ++G+
Sbjct: 654 GGELGEY----------RQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHE 703
Query: 813 LVLQILALKLEDSEAAEQYCAEI------GRPDAYMQLLDMYLDSQDGK----------E 856
L I L+D++ A++YC + G D Y+ LL MYL E
Sbjct: 704 QALFIYVHVLKDTKMAKEYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLELLE 763
Query: 857 PM--FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHN 914
P +AA+++L H LD + + L + + + ++L R Q++ N
Sbjct: 764 PQANLQAALQVLELHYSKLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKN 823
Query: 915 LSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
L A + + R+ + I +E +C C ++G FA YP+ +V Y C
Sbjct: 824 LLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFC 877
|
May play a role in clustering and fusion of late endosomes and lysosomes. Mus musculus (taxid: 10090) |
| >sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 38/285 (13%)
Query: 698 SKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSS 757
S KV I+ YL+ L+ D +DT F T AL K +E E ++
Sbjct: 636 SYKVSII--YLEKLLLDNKFNDTVFPTRLALLYLKRILELEE----------------TT 677
Query: 758 GYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKA--ILYRKLGQETLVL 815
+ +F+ + E+L+ +L +S YD VL I + +L ILYR+L + L
Sbjct: 678 DFKNQEVFKQTI-EKLEDYLTNSKQYDANVVLQEINSQDEFLSTVSIILYRRLSRHQDAL 736
Query: 816 QILALKLEDSEAAEQYCAEIGRPDA-----YMQLLDMYLDSQDGKEPMFKAAVRLLHNHG 870
+ L D E A YC + D YM L ++ + + G + + + +
Sbjct: 737 DVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGSLNI----LDFITKYS 792
Query: 871 ESLDPLQVLETLSPDMPLQ----LASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLA 926
LD +V L ++ ++ L S ++ + Q ++ R D++ L
Sbjct: 793 SRLDLNRVFPLLPKNISMKSYHSLFSSQFRQLFEELSNKETQSKLYQ--KRLEDLNEELT 850
Query: 927 RLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971
++ RS V I E C CH RLG + +++PD ++V Y C ++
Sbjct: 851 KV--RSEKVVITREKTCLFCHKRLGKSVISIFPDGSVVHYGCAKK 893
|
Required for vacuolar assembly. Acts as component of the HOPS complex that acts during the docking stage of vacuole fusion. HOPS is required for vacuolar SNARE complex assembly. It remains bound to SNARE complexes after vacuole fusion. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum GN=DDB_G0291510 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 190 HCRGDN--------VFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSII-VG 240
+ +GDN + V + K L+L E G FV +E+ MD +KT+ + +I VG
Sbjct: 710 YTKGDNEGQEEDITLLYVGLKKTLLLYEWNKGEFVKSRELPLMDNIKTLCAIAPGMICVG 769
Query: 241 TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGG- 299
+ L T ++ D S P +K LS + ++LL +N+G+FVD G
Sbjct: 770 IQKEFLLIDIFTQTIKELYKKSD-SEP--VKALSLDNEILLCFNNIGIFVDESGNKTRQF 826
Query: 300 SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAV 339
L + +P ++ + YV+ + G +E+ +G +Q++
Sbjct: 827 ELKWGSTPSSLALVPSYVLGISGPLIEVRTLLNGNIIQSL 866
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | ||||||
| 225465121 | 1011 | PREDICTED: transforming growth factor-be | 0.992 | 0.979 | 0.735 | 0.0 | |
| 255564592 | 1005 | conserved hypothetical protein [Ricinus | 0.985 | 0.978 | 0.727 | 0.0 | |
| 224072365 | 799 | predicted protein [Populus trichocarpa] | 0.794 | 0.991 | 0.822 | 0.0 | |
| 356504513 | 968 | PREDICTED: transforming growth factor-be | 0.954 | 0.983 | 0.662 | 0.0 | |
| 356522960 | 981 | PREDICTED: transforming growth factor-be | 0.952 | 0.968 | 0.655 | 0.0 | |
| 334182775 | 961 | Vacuolar sorting protein 39 [Arabidopsis | 0.945 | 0.981 | 0.641 | 0.0 | |
| 2462838 | 947 | unknown [Arabidopsis thaliana] | 0.918 | 0.967 | 0.614 | 0.0 | |
| 297845314 | 942 | hypothetical protein ARALYDRAFT_472531 [ | 0.918 | 0.972 | 0.617 | 0.0 | |
| 115461601 | 936 | Os05g0104100 [Oryza sativa Japonica Grou | 0.796 | 0.848 | 0.634 | 0.0 | |
| 242086527 | 934 | hypothetical protein SORBIDRAFT_09g00042 | 0.824 | 0.880 | 0.631 | 0.0 |
| >gi|225465121|ref|XP_002270724.1| PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog [Vitis vinifera] gi|302143252|emb|CBI20547.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1498 bits (3879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/1018 (73%), Positives = 853/1018 (83%), Gaps = 28/1018 (2%)
Query: 1 MAESRPKSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDP 60
MA+ P SRT++E L+ F+ ++ IRS++ SD + L+YIGTQSGSLILLSL+
Sbjct: 1 MAKLHPSSRTVLELLADFE---PAKPVGIRSIATFTSSDSETLVYIGTQSGSLILLSLNS 57
Query: 61 TAATTLHVPN--TTPSQQHV-SFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDS 117
+ H N T + ++V S L++VSV DSPV+SI V+ D+G+VL+L D +FL DS
Sbjct: 58 NFPSLSHSSNASTANAAKNVPSHLRSVSVCDSPVDSIHVVADIGRVLVL-SDGFMFLMDS 116
Query: 118 LLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177
LL QP+K+L FLKG++VI++R+RT D+ES + EN VS L S+S QR L K GSGI
Sbjct: 117 LLIQPVKRLSFLKGVAVISRRLRTGDAESLDFSEN--VSGLVE-SSSASQRFLMKLGSGI 173
Query: 178 KANGVKVKEEEQHCRGDNVFAVIIGKRLVL---------------IELVNG--SFVILKE 220
+ANG K +E E G+ VFA+ K+LVL I+ G SFVILKE
Sbjct: 174 RANGAKARESEHLRDGNRVFAIAAAKKLVLVELLLVNRLGRSDREIDSAGGGASFVILKE 233
Query: 221 IQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVL 280
IQ +DGV+TMVW++DSII+GT +GYSL SCV+GQ V+F+LPD + P LKLL KE KVL
Sbjct: 234 IQGVDGVRTMVWIDDSIIIGTSSGYSLISCVSGQCSVLFSLPDPTSMPHLKLLRKEHKVL 293
Query: 281 LLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVT 340
LLVDNVG+ V+A+GQPVGGSLVFR PD+VGE+S YVVV GKMELYHKKSG+C+Q +
Sbjct: 294 LLVDNVGIIVNAYGQPVGGSLVFRHFPDSVGEISSYVVVASDGKMELYHKKSGVCIQMAS 353
Query: 341 FGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEE 400
EG G + D E +G L+VVATP+KVICY+KVPSEEQIKDLLRKK+FKEAI+L EE
Sbjct: 354 VAAEGSGMSVVADAEDASGNLVVVATPSKVICYRKVPSEEQIKDLLRKKNFKEAITLVEE 413
Query: 401 LECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSL 460
LE EGEM KEMLSFVHAQ+GFLLLFDLHFEEAVDHFL SETMQPSE+FPFIMRDPNRWSL
Sbjct: 414 LESEGEMTKEMLSFVHAQVGFLLLFDLHFEEAVDHFLQSETMQPSEIFPFIMRDPNRWSL 473
Query: 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLEL 520
LVPRNRYWGLHPPP P+EDVVD+GL AIQRAIFLRKAGVET VDD FL NPPSRA+LLE
Sbjct: 474 LVPRNRYWGLHPPPAPLEDVVDDGLKAIQRAIFLRKAGVETPVDDDFLLNPPSRADLLES 533
Query: 521 AIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETL 580
AI+NI RYL+VSR+++LT+ V+EGVDTLLMYLYRALN V DME LA SENSCIVEELETL
Sbjct: 534 AIKNIIRYLQVSRRRDLTLSVREGVDTLLMYLYRALNSVDDMEKLASSENSCIVEELETL 593
Query: 581 LDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGRE 640
LDESGHLRTLAFLYASKGMSSKALAIWR+LARNYSSGLWKDPAVE++LLD A +SG+E
Sbjct: 594 LDESGHLRTLAFLYASKGMSSKALAIWRILARNYSSGLWKDPAVESELLDTNASTLSGKE 653
Query: 641 VAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKK 700
A EA+KILEESSD+DL+LQHLGWIAD+ VLAV+VLTSE+R +QLSPD+VIAAID KK
Sbjct: 654 AVAIEATKILEESSDQDLVLQHLGWIADVCQVLAVRVLTSERRADQLSPDEVIAAIDPKK 713
Query: 701 VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESG-SKAFGTQMGETRSSGY 759
VEILQRYLQWLIEDQDS+DTQFHTLYALSLAKSAIEAFE ES ++ ET S+G
Sbjct: 714 VEILQRYLQWLIEDQDSNDTQFHTLYALSLAKSAIEAFETESSFQNPDAGRLEETCSAGS 773
Query: 760 GKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILA 819
+NSIFQ PV+ERLQIFLQSSDLYDPE+VLDLIEGSELWLEKAILYRKLGQETLVLQILA
Sbjct: 774 ERNSIFQSPVRERLQIFLQSSDLYDPEEVLDLIEGSELWLEKAILYRKLGQETLVLQILA 833
Query: 820 LKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVL 879
LKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD QDGKEPMFKAAVRLLHNHGESLDPLQVL
Sbjct: 834 LKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQDGKEPMFKAAVRLLHNHGESLDPLQVL 893
Query: 880 ETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQIND 939
ETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVD+DARLARLEER+RHVQIND
Sbjct: 894 ETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDVDARLARLEERTRHVQIND 953
Query: 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
ESLCDSCHARLGTKLFAMYPDD+IVCYKC+RRQGESTS+TG DFK+D+L KPGWLVTR
Sbjct: 954 ESLCDSCHARLGTKLFAMYPDDSIVCYKCFRRQGESTSVTGVDFKRDILFKPGWLVTR 1011
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564592|ref|XP_002523291.1| conserved hypothetical protein [Ricinus communis] gi|223537465|gb|EEF39092.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1449 bits (3750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 741/1019 (72%), Positives = 854/1019 (83%), Gaps = 36/1019 (3%)
Query: 1 MAESRPKSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDP 60
MA+ SRT++EP S DLS YS + IRSLSIS IS+ Q LIYI T SGSL
Sbjct: 1 MAKPDSTSRTVIEPHSNIDLSTYSPACSIRSLSISSISNSQTLIYIATSSGSL------- 53
Query: 61 TAATTLHVPNTTPSQQHVSFLKTVSVADS-PVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119
++ + + + S VSF+++VSV DS P+ES+ VL DVGK+LLL D LFL DSLL
Sbjct: 54 ILLSSNNDLSDSSSTSSVSFIRSVSVVDSSPIESVLVLSDVGKLLLL-SDGSLFLADSLL 112
Query: 120 TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179
QP+KK+ F KG+S + KRI++S+ + T LL N SS ST QR+L K GSGI+A
Sbjct: 113 FQPVKKMTFFKGVSAVCKRIQSSEFDGTELLATNLESS------STSQRILHKLGSGIRA 166
Query: 180 NGVKVKEEEQHCRGDNVFAVIIGKRLVLIELV--------------------NGSFVILK 219
NGVK K+ Q +N+FAV+IGKRL+L++LV NGSF +LK
Sbjct: 167 NGVKTKQTLQQNGSNNIFAVVIGKRLILVQLVFGNSNNTNRLAKNEKDIDSLNGSFAVLK 226
Query: 220 EIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKV 279
EIQC+DGVKT+VWLNDSIIVG VNGYSLFSC+TGQSGVIFTLPD+ PP LKLL KE+KV
Sbjct: 227 EIQCIDGVKTIVWLNDSIIVGAVNGYSLFSCITGQSGVIFTLPDLCSPPQLKLLWKEKKV 286
Query: 280 LLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAV 339
L+LVDNVG+ V+ HGQPVGGSL+FR SPD+VGELS VVV+R GKMELY+K+SG C+Q +
Sbjct: 287 LMLVDNVGIVVNEHGQPVGGSLIFRHSPDSVGELSSCVVVVRDGKMELYNKRSGSCIQTL 346
Query: 340 TFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE 399
FG EG G C+ +EECG GKL++ AT TKV CY KV EEQIKDLLRKK+FKEAISL E
Sbjct: 347 IFGAEGVGPCVVANEECGDGKLIIAATTTKVFCYSKVSCEEQIKDLLRKKNFKEAISLLE 406
Query: 400 ELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWS 459
ELE EGEM+ EMLSFVHAQ+GFLLLFDL FEEAV+HFL SETMQPSEVFPFIM+DPNRWS
Sbjct: 407 ELESEGEMSNEMLSFVHAQVGFLLLFDLQFEEAVNHFLQSETMQPSEVFPFIMQDPNRWS 466
Query: 460 LLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLE 519
LLVPRNRYWGLHPPP P+EDVVD+GLMAIQRAIFLRKAGV+T+VD+ F+ NPP+R++LLE
Sbjct: 467 LLVPRNRYWGLHPPPAPLEDVVDDGLMAIQRAIFLRKAGVDTSVDNAFILNPPTRSDLLE 526
Query: 520 LAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELET 579
AI++I RYLEVSR+KEL + V+EGVDTLLMYLYRAL+RV+DME LA SENSCIVEELET
Sbjct: 527 SAIKHIIRYLEVSREKELALSVREGVDTLLMYLYRALDRVYDMERLASSENSCIVEELET 586
Query: 580 LLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGR 639
LLD+SGHLRTLAFLYASKGMSSKALA+WR+LARNYSSGLW+D VE+DL +G +++SG+
Sbjct: 587 LLDDSGHLRTLAFLYASKGMSSKALAMWRILARNYSSGLWEDTVVESDLQEGNTNILSGK 646
Query: 640 EVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSK 699
E+ A EASKILEE SD+DL+LQHLGWIADIN VLAV+VLTS+KR+N LSPD+VIAAID K
Sbjct: 647 EITAIEASKILEELSDQDLVLQHLGWIADINPVLAVEVLTSKKRVNHLSPDEVIAAIDPK 706
Query: 700 KVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGE-TRSSG 758
KVEILQRYLQWLIEDQ+S D QFHTLYALSLAKSAIE+F ES S+ + + + S
Sbjct: 707 KVEILQRYLQWLIEDQESTDIQFHTLYALSLAKSAIESFTLESASENPDDERVDVAKFSD 766
Query: 759 YGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQIL 818
+G+NSIFQ PV+ERLQIFL SSDLYDPE+VLDLIEGSELWLEKAILYRKLGQETLVLQIL
Sbjct: 767 FGRNSIFQSPVRERLQIFLLSSDLYDPEEVLDLIEGSELWLEKAILYRKLGQETLVLQIL 826
Query: 819 ALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQV 878
ALKLED +AAEQYCAEIGRPDAYMQLLDMYLD Q+GK+PMFKAAVRLLHNHGESLDPLQV
Sbjct: 827 ALKLEDCDAAEQYCAEIGRPDAYMQLLDMYLDPQNGKKPMFKAAVRLLHNHGESLDPLQV 886
Query: 879 LETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQIN 938
LETLSP+MPLQLASDTILRMLRARLHHH QGQIVHNLSRA+++DARLAR+EERSRHVQIN
Sbjct: 887 LETLSPEMPLQLASDTILRMLRARLHHHCQGQIVHNLSRAINVDARLARMEERSRHVQIN 946
Query: 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
DESLCDSCHARLGTKLFAMYPDDT+VCYKCYRRQGESTS+ GR+FK+DVL KPGWLVTR
Sbjct: 947 DESLCDSCHARLGTKLFAMYPDDTVVCYKCYRRQGESTSVKGRNFKQDVLFKPGWLVTR 1005
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072365|ref|XP_002303701.1| predicted protein [Populus trichocarpa] gi|222841133|gb|EEE78680.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1335 bits (3456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/799 (82%), Positives = 727/799 (90%), Gaps = 7/799 (0%)
Query: 206 VLIELVNGS------FVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIF 259
+LIEL G ++LKE+QC+DGVKT+VW+NDSIIVGTV GYSLFSC+TGQSGVIF
Sbjct: 1 MLIELRVGKNDKEVDLMVLKEMQCIDGVKTLVWINDSIIVGTVIGYSLFSCITGQSGVIF 60
Query: 260 TLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVV 319
TLPDVSC P+LKLL KE+KVLLLVDNVG+ VDAHGQPVGGSLVFRK PD+VGEL+ YV+V
Sbjct: 61 TLPDVSCLPLLKLLWKEKKVLLLVDNVGIVVDAHGQPVGGSLVFRKGPDSVGELASYVMV 120
Query: 320 LRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSE 379
+R GKMELYHKK G CVQ V+FG EG G CI DEE G GKL+ VATPTKVI Y++VP+E
Sbjct: 121 VRDGKMELYHKKLGGCVQTVSFGSEGFGPCIVADEESGNGKLVAVATPTKVIFYRRVPTE 180
Query: 380 EQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439
EQIKDLLRKK+FKEA+SL EEL+ +GE++ EMLSFVHAQIGFLLLFDLHFEEAV+HFL S
Sbjct: 181 EQIKDLLRKKNFKEAVSLVEELKSDGEISNEMLSFVHAQIGFLLLFDLHFEEAVNHFLQS 240
Query: 440 ETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGV 499
ETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPP P+EDVVD+GLMAIQRAIFL+KAGV
Sbjct: 241 ETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVVDDGLMAIQRAIFLKKAGV 300
Query: 500 ETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRV 559
+T VD+ FL NPP+RA+LLELAI+N++RYLEVSR+KELT+ VKEGVDTLLMYLYRALNR+
Sbjct: 301 DTTVDEDFLLNPPTRADLLELAIKNMSRYLEVSREKELTLSVKEGVDTLLMYLYRALNRI 360
Query: 560 HDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLW 619
DME LA S NSCIVEELETLLDESGHLRTLAFLYASKGMSSKAL IWR+LA+NYSSGLW
Sbjct: 361 DDMEKLASSGNSCIVEELETLLDESGHLRTLAFLYASKGMSSKALTIWRILAKNYSSGLW 420
Query: 620 KDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLT 679
KDPA E++ LDG +V+SGREVAATEASKILEE SD+DL+LQHLGWIAD+N +L V+VLT
Sbjct: 421 KDPAREHEFLDGNTNVISGREVAATEASKILEELSDQDLVLQHLGWIADVNPLLTVQVLT 480
Query: 680 SEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFE 739
SEKR++QLSPD++IAAID KKVEILQRYLQWLIEDQDS DTQFHTLYALSLAKSAIE FE
Sbjct: 481 SEKRVDQLSPDEIIAAIDPKKVEILQRYLQWLIEDQDSGDTQFHTLYALSLAKSAIETFE 540
Query: 740 EESGSK-AFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELW 798
+S S+ ++ ET+ S G NSIFQ PV+ERLQIFLQSSDLYDPEDVLDLIEGSELW
Sbjct: 541 VQSTSQEPDDGRLEETKISDPGGNSIFQSPVRERLQIFLQSSDLYDPEDVLDLIEGSELW 600
Query: 799 LEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPM 858
LEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD Q+GKEPM
Sbjct: 601 LEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDPQNGKEPM 660
Query: 859 FKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRA 918
F AAVRLLHNHGE LDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRA
Sbjct: 661 FNAAVRLLHNHGELLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRA 720
Query: 919 VDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI 978
+++DA+LARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDT+VCYKC+RR GESTS+
Sbjct: 721 LNVDAKLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTVVCYKCFRRLGESTSV 780
Query: 979 TGRDFKKDVLIKPGWLVTR 997
TG DFK+D LIKPGWLVTR
Sbjct: 781 TGHDFKRDPLIKPGWLVTR 799
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504513|ref|XP_003521040.1| PREDICTED: transforming growth factor-beta receptor-associated protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1283 bits (3321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/1005 (66%), Positives = 781/1005 (77%), Gaps = 53/1005 (5%)
Query: 8 SRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQV-LIYIGTQSGSLILLSLDPTAATTL 66
SR ++EP +QFDL+ +SR+S IRSLSIS + L+Y+GT SG+L LS + + +
Sbjct: 2 SRVVLEPHAQFDLTAHSRASSIRSLSISHSKRHRTTLLYVGTHSGTLFSLSAEDSNDSDD 61
Query: 67 HVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKL 126
V + +SFL++VSV+D+ VESI V+++ K LLL D LFL DS L+ KL
Sbjct: 62 AV------LRKLSFLRSVSVSDAAVESISVIEEFRK-LLLLSDGTLFLVDSELSNRATKL 114
Query: 127 GFLKGISVIAKR-IRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185
F KG+S++ +R +R + ES S + + Q+L + N +K
Sbjct: 115 SFPKGVSLVTRRRLRNNGGESEGFGSGLGSGSGSGSGLGLFQKL--------RMNSMKEG 166
Query: 186 EEEQHCRGDNVFAVIIGKRLVLIELV------------NGSFVILKEIQCMDGV-KTMVW 232
E + G VFA+++G RL+L ELV G+ V+LKEIQC+DGV MVW
Sbjct: 167 EVQSETGGGCVFAIVVGNRLILAELVLGNRNGKSERDDGGALVVLKEIQCVDGVVSAMVW 226
Query: 233 LNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDA 292
LNDSI+VGTVNGYSL SCVTGQS VIF+LPDVS PP LKLL KE +VLLLVDNVGV VD
Sbjct: 227 LNDSIVVGTVNGYSLISCVTGQSSVIFSLPDVSWPPRLKLLHKEWRVLLLVDNVGVIVDP 286
Query: 293 HGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIAT 352
HGQPVGGSLVFR D++GE+ YVVV+ GK+ LYHK+ G CVQ + FGGEG G+C+
Sbjct: 287 HGQPVGGSLVFRHGLDSMGEIDSYVVVVSDGKIGLYHKRHGGCVQVLPFGGEGVGRCVVA 346
Query: 353 DEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEML 412
EE G+L+ VAT TKV+CYQK+PS EQIKDLLRKK++K AISL EELE EGEM+K++L
Sbjct: 347 SEEDKGGRLVAVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLL 406
Query: 413 SFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP 472
SFVHAQ+GFLLLFDLHF+EAVDHFL SETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP
Sbjct: 407 SFVHAQVGFLLLFDLHFKEAVDHFLLSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP 466
Query: 473 PPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVS 532
PP P+EDV+D+GLM IQRA FLRKAGVET VD+ NP +RA+LLE AI+NI+RYLE
Sbjct: 467 PPAPLEDVIDDGLMTIQRASFLRKAGVETIVDNDLFLNPANRADLLESAIKNISRYLEAC 526
Query: 533 RKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAF 592
R+K+LT V+EGVDTLLMYLYRALN V DME LA S N C+VEELE +L+ESGHLRTLAF
Sbjct: 527 REKDLTESVREGVDTLLMYLYRALNSVEDMEKLASSINWCVVEELEQMLEESGHLRTLAF 586
Query: 593 LYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEE 652
L ASKGMSSKA+ IWR+LARNYSSGLWKDP++EN+ + +++SGR +AA EASKILEE
Sbjct: 587 LCASKGMSSKAVHIWRILARNYSSGLWKDPSLENNTQNSGGNLISGRVIAAAEASKILEE 646
Query: 653 SSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLI 712
SSD++LILQHLGWIADIN VLAV VLTS+KR +LSPD+V+ ID +K EILQRYLQWLI
Sbjct: 647 SSDQELILQHLGWIADINQVLAVNVLTSDKREIELSPDEVVTTIDPQKAEILQRYLQWLI 706
Query: 713 EDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQER 772
EDQD +DTQ HTLYALSLAKSAIEAFE E+ S+ + ETRS KNSIFQ PV+ER
Sbjct: 707 EDQDCNDTQLHTLYALSLAKSAIEAFESENISENLDSGNIETRSLAMLKNSIFQIPVRER 766
Query: 773 LQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC 832
LQIFLQSSDLYDPE+VLDLIEGSELWLEKAILYR+LGQETLVLQILAL LE
Sbjct: 767 LQIFLQSSDLYDPEEVLDLIEGSELWLEKAILYRRLGQETLVLQILALLLE--------- 817
Query: 833 AEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLAS 892
MYLD QD K+PMF AAVRLLHNHGESLDPLQVLE LSPDMPLQLAS
Sbjct: 818 --------------MYLDPQDDKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLAS 863
Query: 893 DTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGT 952
DT+LRM RAR+HHHRQGQIVHNLSRAVDIDARL+RLEERSR+VQINDESLCDSC ARLGT
Sbjct: 864 DTLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLEERSRNVQINDESLCDSCDARLGT 923
Query: 953 KLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
KLFAMYPDDT+VCYKCYRRQGES S++GR+FK+D+LIKPGWLV+R
Sbjct: 924 KLFAMYPDDTVVCYKCYRRQGESVSVSGRNFKEDILIKPGWLVSR 968
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522960|ref|XP_003530110.1| PREDICTED: transforming growth factor-beta receptor-associated protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1272 bits (3291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/1005 (65%), Positives = 770/1005 (76%), Gaps = 55/1005 (5%)
Query: 9 RTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQV-LIYIGTQSGSLILLSLDPTAATTLH 67
R ++EP +QFDL+ +SR+S IRSL+I+ L Y+GT SG+L LS + + T
Sbjct: 16 RVVLEPHAQFDLTAHSRASSIRSLAIAHSKRHHTTLFYVGTHSGTLFSLSAEDSNYT--- 72
Query: 68 VPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLG 127
+ + +SFL++VSV+D+ VESI V+++ GK+LLL D LFL DS L+ KL
Sbjct: 73 --DDDAVLRKLSFLRSVSVSDTAVESISVIEEFGKLLLL-SDGALFLVDSELSNGATKLS 129
Query: 128 FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187
F KG+S++ +R NN + G ++ N +K +
Sbjct: 130 FPKGVSLVTRR----------RFRNNGGGESEGFGSGLGSGSGLGLFQKLRMNSMKEVDV 179
Query: 188 EQHCRGDNVFAVIIGKRLVLIELV--------------NGSFVILKEIQCMDGV-KTMVW 232
+ G VFAV++GKRL+L ELV G+ VILKEIQC+DGV MVW
Sbjct: 180 QSETGGGFVFAVVVGKRLILAELVLGNRNGKTERDDGGGGTLVILKEIQCVDGVVSAMVW 239
Query: 233 LNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDA 292
LNDSI+VGTVNGYSL SCVTGQ+ VIF+LPDVS PP LKLL KE +VLLLVDNVGV VD
Sbjct: 240 LNDSIVVGTVNGYSLISCVTGQNSVIFSLPDVSRPPRLKLLHKEWRVLLLVDNVGVIVDP 299
Query: 293 HGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIAT 352
HGQPVGGSLVFR D VGE+ YVVV+ GK+ELYHK+ CVQ + FGGEG G+C+
Sbjct: 300 HGQPVGGSLVFRHGLDLVGEIDSYVVVVSDGKIELYHKRHCGCVQVLPFGGEGVGRCVVA 359
Query: 353 DEECGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEML 412
EE G+L+ VAT TKV+CYQK+PS EQIKDLLRKK++K AISL EELE EGEM+K++L
Sbjct: 360 SEEDRGGRLVAVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLL 419
Query: 413 SFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP 472
SFVHAQ+GFLLLFDLHF+EAVDHFL SETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP
Sbjct: 420 SFVHAQVGFLLLFDLHFKEAVDHFLLSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHP 479
Query: 473 PPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVS 532
PP P+EDV+D+GLM IQRA FLRKAGVET VD NP +RA+LLE AI+NI+RYLE
Sbjct: 480 PPAPLEDVIDDGLMTIQRASFLRKAGVETIVDSDLFLNPANRADLLESAIKNISRYLEAC 539
Query: 533 RKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAF 592
R+K+LT V+EGVDTLLMYLYRALN V DME LA S N C+VEELE +L+ESGHLRTLAF
Sbjct: 540 REKDLTESVREGVDTLLMYLYRALNSVEDMERLASSINWCVVEELEQMLEESGHLRTLAF 599
Query: 593 LYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEE 652
L ASKGMSSKA+ IWR+LARNYSSGLWKDP++EN + +++SGR +AA EASKILEE
Sbjct: 600 LCASKGMSSKAVHIWRILARNYSSGLWKDPSLENITQNSGENLISGRAIAAAEASKILEE 659
Query: 653 SSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLI 712
SSD++LILQHLGWIADI+ VLAV VLTS+KR QLSPD+V+ ID +KVEILQRYLQWLI
Sbjct: 660 SSDQELILQHLGWIADISQVLAVNVLTSDKREIQLSPDEVVTTIDPQKVEILQRYLQWLI 719
Query: 713 EDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQER 772
EDQD +DTQ HTLYALSLAKSAI+AFE E+ S+ + TRS KNSIF+ PV+ER
Sbjct: 720 EDQDCNDTQLHTLYALSLAKSAIKAFESENISENLDSGNIGTRSLAMLKNSIFKIPVRER 779
Query: 773 LQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC 832
LQIFLQSSDLYDPE+V DLIEGSELWLEKAILYR+LGQETLVLQILAL LE
Sbjct: 780 LQIFLQSSDLYDPEEVHDLIEGSELWLEKAILYRRLGQETLVLQILALLLE--------- 830
Query: 833 AEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLAS 892
MYLD QD K+PMF AAVRLLH HGESLDPLQVLE LSPDMPLQLAS
Sbjct: 831 --------------MYLDPQDDKDPMFTAAVRLLHKHGESLDPLQVLEKLSPDMPLQLAS 876
Query: 893 DTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGT 952
DT+LRM RAR+HHHRQGQIVHNLSRAVDIDARL+RLEERSRHVQINDESLCDSC ARLGT
Sbjct: 877 DTLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLEERSRHVQINDESLCDSCDARLGT 936
Query: 953 KLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
KLFAMYPDD++VCYKCYRRQGES S++GR+FK+D+LIKPGWLV+R
Sbjct: 937 KLFAMYPDDSVVCYKCYRRQGESVSVSGRNFKEDILIKPGWLVSR 981
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182775|ref|NP_173699.5| Vacuolar sorting protein 39 [Arabidopsis thaliana] gi|332192176|gb|AEE30297.1| Vacuolar sorting protein 39 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1007 (64%), Positives = 782/1007 (77%), Gaps = 64/1007 (6%)
Query: 7 KSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTL 66
KSR +VE ++FDL + IR+LS+SPISD Q L+Y+GT SGSLILLSLD T
Sbjct: 3 KSRAVVELTARFDLGGDDK---IRALSLSPISDSQTLVYLGTYSGSLILLSLDTLTNT-- 57
Query: 67 HVPNTTPSQQHVSFLKTVSVADSPVESIFVL-DDVGKVLLLFCDQCLFLTDSLLTQPLKK 125
VS L +VS++ SPVESIFVL ++ G+VL L C+ LFL DSLL+QP K+
Sbjct: 58 -----------VSRLASVSLSPSPVESIFVLGEERGRVLAL-CNGYLFLLDSLLSQPAKR 105
Query: 126 LG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184
LG LKGI+VIAKR+R DS ST+LL S + +S+ ++ LQ G+G + V+
Sbjct: 106 LGGLLKGINVIAKRVRGRDSSSTDLL-----PSEISTDSSSSKKFLQLLGAGNLVSDVRG 160
Query: 185 KE--EEQHCRGDNVFAVIIGKRLVLIEL-------VNGSFVILKEIQCMDGVKTMVWLND 235
+ E+ +G VFAV IG+R++LIEL ++GSFV+LKEI + G+KT+VWL+D
Sbjct: 161 NDSRHERVQQGHYVFAVAIGERMLLIELQCAEKEGLSGSFVVLKEILGIGGIKTLVWLDD 220
Query: 236 SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ 295
+I GTV GYSL SCVTG SGVIFTLPDVS PP+LKLL KE KVLLLVDNVGV VD +GQ
Sbjct: 221 YVIAGTVKGYSLISCVTGLSGVIFTLPDVSGPPLLKLLCKEWKVLLLVDNVGVVVDTNGQ 280
Query: 296 PVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEE 355
P+GGSLVFR+ PD+VGELS Y+V + GKME++ KKSG CVQ+V+FG +G G + +E
Sbjct: 281 PIGGSLVFRRRPDSVGELSFYLVTVGDGKMEIHQKKSGACVQSVSFGPQGCGPSLLAADE 340
Query: 356 CGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFV 415
G G LLVV T +K+I Y++VP EEQIKDLLRKK ++E ISL EEL+ +GE++K+MLSF+
Sbjct: 341 AGDGNLLVVTTLSKLIFYRRVPYEEQIKDLLRKKRYRETISLVEELDSQGEISKDMLSFL 400
Query: 416 HAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPV 475
HAQIG+LLLFDL FEEAV+ FL SE M+PSEVFPFIMRDPNRWSL+VPRNRYWGLHPPP
Sbjct: 401 HAQIGYLLLFDLRFEEAVNQFLKSEKMEPSEVFPFIMRDPNRWSLVVPRNRYWGLHPPPA 460
Query: 476 PVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKK 535
P EDVVDNGLMAIQRA FLRKAG++T VD+ F S+PPSRA+LL+ AI+NITRYLE+SR+K
Sbjct: 461 PFEDVVDNGLMAIQRANFLRKAGMDTPVDEEFFSDPPSRADLLDSAIKNITRYLEISREK 520
Query: 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYA 595
LT+ V+EG+DTLLM LYRALNRV DMENLA S N+C+VEELETLL ESGHLRTLAFLYA
Sbjct: 521 GLTLPVREGIDTLLMLLYRALNRVEDMENLASSGNNCVVEELETLLTESGHLRTLAFLYA 580
Query: 596 SKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCAD----VMSGREVAATEASKILE 651
+KGM +KALAIWR+ +NYSSGLW+D +DL+ D +SG+E AA EA++ILE
Sbjct: 581 TKGMGAKALAIWRLFTKNYSSGLWQD---SDDLVPYLHDNELIRLSGKEAAAAEAARILE 637
Query: 652 ESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWL 711
E D +L LQHL WIAD+N + A++VLTS+KR +LSP++VI AID KKVEI+QRY QWL
Sbjct: 638 EPCDPELALQHLSWIADVNPLFAIQVLTSDKRTEELSPEQVIQAIDPKKVEIIQRYFQWL 697
Query: 712 IEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMG-ETRSSGYGKNSIFQCPVQ 770
IE++D D Q HT YALSLA+SA+E E ++G + G E S G S+F+ V+
Sbjct: 698 IEERDYTDPQLHTSYALSLARSALECVEVQNGIQEADVPNGSEAHDSNVGSISLFEVDVR 757
Query: 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQ 830
ERLQ FLQSSDLYDPE++L+L+EGSELWLEKAILYR++G+ETLVLQ
Sbjct: 758 ERLQAFLQSSDLYDPEEILELVEGSELWLEKAILYRRIGKETLVLQ-------------- 803
Query: 831 YCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQL 890
LLDMYLD Q+GKEPMFKAAVRLLHNHGESLDPLQVL+ LSPDMPL+L
Sbjct: 804 ---------ILALLLDMYLDPQNGKEPMFKAAVRLLHNHGESLDPLQVLDKLSPDMPLKL 854
Query: 891 ASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARL 950
ASDTILRMLRAR+HHHRQGQIVHN+SRA+D+D+RLARLEERSRH+QINDESLCDSC+ARL
Sbjct: 855 ASDTILRMLRARVHHHRQGQIVHNISRALDVDSRLARLEERSRHMQINDESLCDSCYARL 914
Query: 951 GTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
GTKLFAMYPDDTIVCYKCYRR GES S+TGRDFK+DVLIKPGWLV R
Sbjct: 915 GTKLFAMYPDDTIVCYKCYRRLGESKSVTGRDFKRDVLIKPGWLVNR 961
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2462838|gb|AAB72173.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1020 (61%), Positives = 758/1020 (74%), Gaps = 104/1020 (10%)
Query: 7 KSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTL 66
KSR +VE ++FDL + IR+LS+SPISD Q L+Y+GT SGSLILLSLD T
Sbjct: 3 KSRAVVELTARFDLGGDDK---IRALSLSPISDSQTLVYLGTYSGSLILLSLDTLTNT-- 57
Query: 67 HVPNTTPSQQHVSFLKTVSVADSPVESIFVL-DDVGKVLLLFCDQCLFLTDSLLTQPLKK 125
VS L +VS++ SPVESIFVL ++ G+VL L C+ LFL DSLL+QP K+
Sbjct: 58 -----------VSRLASVSLSPSPVESIFVLGEERGRVLAL-CNGYLFLLDSLLSQPAKR 105
Query: 126 LG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184
LG LKGI+VIAKR+R DS ST+LL S + +S+ ++ LQ G+G + V+
Sbjct: 106 LGGLLKGINVIAKRVRGRDSSSTDLL-----PSEISTDSSSSKKFLQLLGAGNLVSDVRG 160
Query: 185 KE--EEQHCRGDNVFAVIIGKRLVLIEL-------VNGSFVILKEIQCMDGVKTMVWLND 235
+ E+ +G VFAV IG+R++LIEL ++GSFV+LKEI + G+KT+VWL+D
Sbjct: 161 NDSRHERVQQGHYVFAVAIGERMLLIELQCAEKEGLSGSFVVLKEILGIGGIKTLVWLDD 220
Query: 236 SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ 295
+I GTV GYSL SCVTG SGVIFTLPDVS PP+LKLL KE KVLLLVDNVGV VD +GQ
Sbjct: 221 YVIAGTVKGYSLISCVTGLSGVIFTLPDVSGPPLLKLLCKEWKVLLLVDNVGVVVDTNGQ 280
Query: 296 PVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEE 355
P+GGSLVFR+ PD+VGELS Y+V + GKME++ KKSG CVQ+V+FG +G G + +E
Sbjct: 281 PIGGSLVFRRRPDSVGELSFYLVTVGDGKMEIHQKKSGACVQSVSFGPQGCGPSLLAADE 340
Query: 356 CGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFV 415
G G LLVV T +K+I Y++VP EEQIKDLLRKK ++E ISL EEL+ +GE++K+MLSF+
Sbjct: 341 AGDGNLLVVTTLSKLIFYRRVPYEEQIKDLLRKKRYRETISLVEELDSQGEISKDMLSFL 400
Query: 416 HAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPV 475
HAQIG+LLLFDL FEEAV+ FL SE M+PSEVFPFIMRDPNRWSL+VPRNRYWGLHPPP
Sbjct: 401 HAQIGYLLLFDLRFEEAVNQFLKSEKMEPSEVFPFIMRDPNRWSLVVPRNRYWGLHPPPA 460
Query: 476 PVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKK 535
P EDVVDNGLMAIQRA FLRKAG++T VD+ F S+PPSRA+LL+ AI+NIT
Sbjct: 461 PFEDVVDNGLMAIQRANFLRKAGMDTPVDEEFFSDPPSRADLLDSAIKNIT--------- 511
Query: 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYA 595
RALNRV DMENLA S N+C+VEELETLL ESGHLRTLAFLYA
Sbjct: 512 ------------------RALNRVEDMENLASSGNNCVVEELETLLTESGHLRTLAFLYA 553
Query: 596 SKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCAD----VMSGREVAATEASKILE 651
+KGM +KALAIWR+ +NYSSGLW+D +DL+ D +SG+E AA EA++ILE
Sbjct: 554 TKGMGAKALAIWRLFTKNYSSGLWQD---SDDLVPYLHDNELIRLSGKEAAAAEAARILE 610
Query: 652 ESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWL 711
E D +L LQHL WIAD+N + A++VLTS+KR +LSP++VI AID KKVEI+QRY QWL
Sbjct: 611 EPCDPELALQHLSWIADVNPLFAIQVLTSDKRTEELSPEQVIQAIDPKKVEIIQRYFQWL 670
Query: 712 IEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMG-ETRSSGYGKNSIFQCPVQ 770
IE++D D Q HT YALSLA+SA+E E ++G + G E S G S+F+ V+
Sbjct: 671 IEERDYTDPQLHTSYALSLARSALECVEVQNGIQEADVPNGSEAHDSNVGSISLFEVDVR 730
Query: 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQ 830
ERLQ FLQSSDLYDPE++L+L+EGSELWLEKAILYR++G+ETLVLQ
Sbjct: 731 ERLQAFLQSSDLYDPEEILELVEGSELWLEKAILYRRIGKETLVLQ-------------- 776
Query: 831 YCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVL----------- 879
LLDMYLD Q+GKEPMFKAAVRLLHNHGESLDPLQVL
Sbjct: 777 ---------ILALLLDMYLDPQNGKEPMFKAAVRLLHNHGESLDPLQVLDLFDDRADIFF 827
Query: 880 --ETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQI 937
+ LSPDMPL+LASDTILRMLRAR+HHHRQGQIVHN+SRA+D+D+RLARLEERSRH+QI
Sbjct: 828 YMQKLSPDMPLKLASDTILRMLRARVHHHRQGQIVHNISRALDVDSRLARLEERSRHMQI 887
Query: 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
NDESLCDSC+ARLGTKLFAMYPDDTIVCYKCYRR GES S+TGRDFK+DVLIKPGWLV R
Sbjct: 888 NDESLCDSCYARLGTKLFAMYPDDTIVCYKCYRRLGESKSVTGRDFKRDVLIKPGWLVNR 947
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845314|ref|XP_002890538.1| hypothetical protein ARALYDRAFT_472531 [Arabidopsis lyrata subsp. lyrata] gi|297336380|gb|EFH66797.1| hypothetical protein ARALYDRAFT_472531 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1015 (61%), Positives = 756/1015 (74%), Gaps = 99/1015 (9%)
Query: 7 KSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTL 66
KSR +VE ++FDL + IR+LS+SPISD Q L+Y+GT SGSLILLSLD
Sbjct: 3 KSRAVVELTARFDLGGDDK---IRALSLSPISDSQTLVYLGTSSGSLILLSLDTLTNI-- 57
Query: 67 HVPNTTPSQQHVSFLKTVSVADSPVESIFVL-DDVGKVLLLFCDQCLFLTDSLLTQPLKK 125
VS L +VS++ SPVESIFVL ++ GKVL L C+ LFL DSLL+QP K+
Sbjct: 58 -----------VSRLGSVSLSASPVESIFVLGEERGKVLAL-CNGYLFLMDSLLSQPTKR 105
Query: 126 LG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184
LG LKGI+V+A+R+R DS ST+LL S + +S+ ++ LQ G+G N VK
Sbjct: 106 LGGVLKGINVVARRVRGRDSSSTDLL-----PSEISTDSSSSKKFLQLLGAGNLVNDVKG 160
Query: 185 KE--EEQHCRGDNVFAVIIGKRLVLIEL-------VNGSFVILKEIQCMDGVKTMVWLND 235
K+ ++ +G VFAV IG+R++LIEL ++ SFV+LKEI + G+KT+VWL+D
Sbjct: 161 KDFPHDRVHQGHYVFAVAIGERMLLIELQCDEKEGLSSSFVVLKEILGIGGIKTLVWLDD 220
Query: 236 SIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ 295
+I GTV GYSL SCVTGQSGVIFTLPDVS PP+LKLL KE KVLLLVDNVGV VD +GQ
Sbjct: 221 YVIAGTVKGYSLISCVTGQSGVIFTLPDVSGPPLLKLLCKEWKVLLLVDNVGVVVDTNGQ 280
Query: 296 PVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEE 355
P+GGSLVF++ PD+VGELS Y+V + GKME++ KKSG CVQ+V+FG +G G + +E
Sbjct: 281 PIGGSLVFQRRPDSVGELSFYLVTVGDGKMEIHQKKSGACVQSVSFGPQGCGPSLLAADE 340
Query: 356 CGAGKLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFV 415
G G LL V T +K+I Y++VP EEQIKDLLRKK ++EAISL EEL+ +GE++K+MLSF+
Sbjct: 341 AGDGNLLAVTTLSKLIFYRRVPYEEQIKDLLRKKRYREAISLVEELDSQGEISKDMLSFL 400
Query: 416 HAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPV 475
HAQIG+LLLFDL FEEAV+ FL SE M+PSEVFPFIMRDPNRWSL+VPRNRYWGLHPPP
Sbjct: 401 HAQIGYLLLFDLRFEEAVNQFLKSEEMEPSEVFPFIMRDPNRWSLVVPRNRYWGLHPPPA 460
Query: 476 PVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKK 535
P EDVVDNGLMAIQRA FLRKAG++T VD+ F SNPPSRA+LL+ AI+NITR
Sbjct: 461 PFEDVVDNGLMAIQRANFLRKAGMDTPVDEEFFSNPPSRADLLDSAIKNITR-------- 512
Query: 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIV-EELETLLDESGHLRTLAFLY 594
ALNR+ DMENLA SEN+C+V EELETLL ESGHLRTLAFLY
Sbjct: 513 -------------------ALNRIEDMENLASSENNCVVVEELETLLTESGHLRTLAFLY 553
Query: 595 ASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCAD----VMSGREVAATEASKIL 650
A+KGMS+KALAIWR+ +NYSSGLW+D +DL+ D +SG+E AA EA++IL
Sbjct: 554 ATKGMSAKALAIWRLFTKNYSSGLWQD---SDDLVPYLHDNELIRLSGKEAAAAEAARIL 610
Query: 651 EESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQW 710
EE D +L LQHL WI++IN + A++VLTS+KR +LSP++VI AID KKVEI+QRY QW
Sbjct: 611 EEPCDPELTLQHLSWISEINPLFAIQVLTSDKRTEELSPEQVIQAIDPKKVEIIQRYFQW 670
Query: 711 LIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQ 770
LIE++D D Q HT YALSLAKSA+E E ++G E G S+ + V+
Sbjct: 671 LIEERDYTDPQLHTSYALSLAKSALECVEVQNGIPEADAGGREAHDCNVGSISLLESDVR 730
Query: 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQ 830
ERLQ FLQSSDLYDPE++L+LIEGSELWLEKAILYR++GQETLVLQ
Sbjct: 731 ERLQTFLQSSDLYDPEEILELIEGSELWLEKAILYRRIGQETLVLQ-------------- 776
Query: 831 YCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLET--------L 882
LLDMYLD Q+GKEPMFKAAVRLLHNHG SLDPLQVLE+ L
Sbjct: 777 ---------ILALLLDMYLDPQNGKEPMFKAAVRLLHNHGASLDPLQVLESCIMSNLQKL 827
Query: 883 SPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESL 942
SPDMPL+LASDTILRMLRAR+HHHRQGQIVHN+SRA+D+D+RLARLEERSRH+QINDESL
Sbjct: 828 SPDMPLKLASDTILRMLRARVHHHRQGQIVHNISRALDVDSRLARLEERSRHMQINDESL 887
Query: 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRDFKKDVLIKPGWLVTR 997
CDSC+ARLGTKLFAMYPDDTIVCYKCYRR GES S+TGRDFK+DVLIKPGWLV R
Sbjct: 888 CDSCYARLGTKLFAMYPDDTIVCYKCYRRLGESKSVTGRDFKRDVLIKPGWLVNR 942
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115461601|ref|NP_001054400.1| Os05g0104100 [Oryza sativa Japonica Group] gi|46359900|gb|AAS88832.1| unknown protein [Oryza sativa Japonica Group] gi|113577951|dbj|BAF16314.1| Os05g0104100 [Oryza sativa Japonica Group] gi|222629882|gb|EEE62014.1| hypothetical protein OsJ_16796 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/808 (63%), Positives = 631/808 (78%), Gaps = 14/808 (1%)
Query: 197 FAVIIGKRLVLIELV----NGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVT 252
AV +GK+L+L++L + V ++I +DGVK + W+ DS+ VGT +GYSLFS
Sbjct: 136 LAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSVFVGTASGYSLFSTTN 195
Query: 253 GQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGE 312
Q G IFTLP+ S PP +K LS +V+LLVDNVGV VD G PVG S VF +PD + E
Sbjct: 196 AQGGDIFTLPESSRPPRVKPLSGGDEVMLLVDNVGVVVDRSGHPVGSSFVFNTTPDCIAE 255
Query: 313 LSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGK-LLVVATPTKVI 371
+ YVVV K+++Y +K+G +QA+ F G G I E+ G G ++V+AT KV
Sbjct: 256 VYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAGIGSDVVVIATAYKVF 315
Query: 372 CYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEE 431
CY+KV + EQIK LLR+K + EAISL +E E +GE++ +M+SFVHAQ+GFLL FDL FE+
Sbjct: 316 CYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVHAQLGFLLFFDLRFED 375
Query: 432 AVDHFLHSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRA 491
AV+HFL SETMQP+E+FPFIMRDPNRWS LVPR RYWGLH PP P+E+V+D+GL+ +Q+A
Sbjct: 376 AVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKPLEEVIDDGLVTLQQA 435
Query: 492 IFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVKEGVDTLLMY 551
+FL+KAGV+T VDD FLSNPPSRA+LLE+AIRNI RYL SR+K+L+ EGVDTLLMY
Sbjct: 436 LFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKDLSSSEMEGVDTLLMY 495
Query: 552 LYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLA 611
LYRALN V DME LA S+NSC+VEELE+LLD+SGHLRTLAFLY SKGM SK+L IWR+LA
Sbjct: 496 LYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGSKGMCSKSLGIWRILA 555
Query: 612 RNYSSGLWKDPAV--ENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADI 669
RNYS+GLWKD A+ E D L+ MSG E+AA EASKIL+ SSD+DL+L+HLGW+ADI
Sbjct: 556 RNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASSDQDLVLEHLGWVADI 615
Query: 670 NAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALS 729
+ LA +LTSE R QLSP+KV+AAID +KV I QRYLQWLIE+Q+ D+ +HT YALS
Sbjct: 616 DQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEEQECDEPHYHTSYALS 675
Query: 730 LAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVL 789
L++SA++A G+ E + + + F ++ERLQ FLQSSDLYDPE+VL
Sbjct: 676 LSRSAMDAVR-------LGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSDLYDPEEVL 728
Query: 790 DLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYL 849
+I SELWLEKAILYRK+GQE +VLQILALKLEDSEAAEQYCAEIGR DAY+QLLD+YL
Sbjct: 729 YVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAYIQLLDLYL 788
Query: 850 DSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQG 909
D ++GK PMF AAVRLLHNHGESLDP+QVLE LS DMPLQLASDTILRMLRAR+HHHRQG
Sbjct: 789 DPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRARVHHHRQG 848
Query: 910 QIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCY 969
Q+VHNLSRA ++DARL RLEERSRHVQ+ DES+CDSC ARLGTKLF MYPDD++VCY+CY
Sbjct: 849 QVVHNLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDDSVVCYRCY 908
Query: 970 RRQGESTSITGRDFKKDVLIKPGWLVTR 997
R QG+S S GR+F+K + K WLV+R
Sbjct: 909 RNQGDSASPHGRNFRKGGIFKQSWLVSR 936
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242086527|ref|XP_002439096.1| hypothetical protein SORBIDRAFT_09g000420 [Sorghum bicolor] gi|241944381|gb|EES17526.1| hypothetical protein SORBIDRAFT_09g000420 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/836 (63%), Positives = 645/836 (77%), Gaps = 14/836 (1%)
Query: 168 RLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELV----NGSFVILKEIQC 223
R +++ GS V + + A+ +GK+L+ ++L + V +EI
Sbjct: 107 RPVRRLGSLRNVAAVAARRVDPADPSSCSVAISVGKKLLRVDLTLHDADELDVQTREITS 166
Query: 224 MDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV 283
++GVK + W++DS+ V T GYSL+S TGQ IF+LP+ S P +K LS +V+LLV
Sbjct: 167 VEGVKALAWVDDSVFVATATGYSLYSSTTGQGVDIFSLPESSGHPRVKPLSGGDEVMLLV 226
Query: 284 DNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGG 343
DNVGV VD GQPVG SLVF PD + E+ YV+V K+++Y +++ +Q +
Sbjct: 227 DNVGVVVDRFGQPVGSSLVFSTMPDCIAEVFPYVIVAGDSKVDVYRRRNAAHLQTIPVAR 286
Query: 344 EGGGQCIATDEECGAG-KLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELE 402
G G I ++ G G +L+V+AT KV CY+KV + EQIK LR+K++KEAISL EE E
Sbjct: 287 TGQGILIVVSDDDGIGTELVVIATTYKVFCYRKVSAVEQIKASLRRKNYKEAISLLEEFE 346
Query: 403 CEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSLLV 462
+GE++KEM+SFV AQ+GFLL FDL FE+AV+HFL SETMQPSEVFPFIMRDPNRWS LV
Sbjct: 347 SDGEISKEMISFVQAQLGFLLFFDLRFEDAVNHFLLSETMQPSEVFPFIMRDPNRWSDLV 406
Query: 463 PRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAI 522
PR RYWGLHPPP P+E+V+D+GL+A+Q+A+FL+KAGV+T VD+ FLSNPPSRA+LLELAI
Sbjct: 407 PRKRYWGLHPPPKPLEEVIDDGLVAVQQALFLKKAGVDTVVDEDFLSNPPSRADLLELAI 466
Query: 523 RNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLD 582
RNI RYL SR K L+ EGVDTLLMYLYRAL+ V DME LA S+NSCIV+ELE+LLD
Sbjct: 467 RNIIRYLCASRMKNLSSPEMEGVDTLLMYLYRALHLVDDMEKLASSQNSCIVDELESLLD 526
Query: 583 ESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVA 642
+SGHLRTLAFLY SKGM SKAL+IWR+LARNYS+GLWKD + EN SG E+A
Sbjct: 527 DSGHLRTLAFLYGSKGMCSKALSIWRILARNYSTGLWKDLS-ENGSCGTLVGKRSGEEIA 585
Query: 643 ATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVE 702
A EA+KIL+E SDEDL+L+HLGW+ADI+ LA+ VLTSE R NQLSP+KV+AA+D++KV
Sbjct: 586 AIEAAKILKELSDEDLVLEHLGWVADIDQDLAIAVLTSETRENQLSPEKVVAAVDAEKVV 645
Query: 703 ILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKN 762
I QRYLQWLIEDQ DD +HT YALSLAKSAIEAF+ E SK G E S +
Sbjct: 646 IHQRYLQWLIEDQGCDDPHYHTSYALSLAKSAIEAFDME--SKYRGKDNSEIDS-----D 698
Query: 763 SIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKL 822
+ F ++E LQ+FLQ+SDLYDPEDVLD+I SELWLEKAILYRK+GQE +VLQILALKL
Sbjct: 699 AQFVYLLRESLQLFLQASDLYDPEDVLDVIAESELWLEKAILYRKMGQENIVLQILALKL 758
Query: 823 EDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETL 882
EDSEAAEQYCAEIGR DAY+QLL +YLD Q+GKEPMF AAVRLLHNHGESLDP+QVLE L
Sbjct: 759 EDSEAAEQYCAEIGRDDAYIQLLGLYLDPQNGKEPMFTAAVRLLHNHGESLDPIQVLERL 818
Query: 883 SPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESL 942
SPDMPLQLASDTILRMLRAR+HHHRQGQIVHNLSRA ++D RL RLEERSRHVQ+ DES+
Sbjct: 819 SPDMPLQLASDTILRMLRARVHHHRQGQIVHNLSRATNLDVRLTRLEERSRHVQLTDESI 878
Query: 943 CDSCHARLGTKLFAMYPDDTIVCYKCYR-RQGESTSITGRDFKKDVLIKPGWLVTR 997
CDSC ARLGTKLFAMYPDD++VCY+CYR +QG+S+S GR +KDV+ K WLV+R
Sbjct: 879 CDSCRARLGTKLFAMYPDDSVVCYRCYRSQQGDSSSGRGRSLRKDVIFKQSWLVSR 934
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 997 | ||||||
| MGI|MGI:2447427 | 860 | Tgfbrap1 "transforming growth | 0.295 | 0.343 | 0.258 | 3.5e-32 | |
| UNIPROTKB|Q8WUH2 | 860 | TGFBRAP1 "Transforming growth | 0.307 | 0.356 | 0.268 | 3e-31 | |
| UNIPROTKB|I3LIP2 | 859 | TGFBRAP1 "Uncharacterized prot | 0.300 | 0.349 | 0.270 | 6.5e-30 | |
| UNIPROTKB|F1P4R5 | 865 | TGFBRAP1 "Uncharacterized prot | 0.223 | 0.257 | 0.273 | 9.6e-29 | |
| UNIPROTKB|F1MWF9 | 859 | TGFBRAP1 "Transforming growth | 0.300 | 0.349 | 0.270 | 4.2e-27 | |
| ZFIN|ZDB-GENE-070410-66 | 863 | tgfbrap1 "transforming growth | 0.300 | 0.347 | 0.274 | 4.6e-27 | |
| UNIPROTKB|A7MB11 | 859 | TGFBRAP1 "Transforming growth | 0.300 | 0.349 | 0.273 | 1e-26 | |
| DICTYBASE|DDB_G0279169 | 851 | vps39 "citron-like domain-cont | 0.303 | 0.356 | 0.265 | 1e-26 | |
| UNIPROTKB|E2RKZ9 | 859 | TGFBRAP1 "Uncharacterized prot | 0.311 | 0.362 | 0.266 | 4.9e-26 | |
| DICTYBASE|DDB_G0277663 | 1068 | DDB_G0277663 "Transforming gro | 0.199 | 0.186 | 0.242 | 1.3e-23 |
| MGI|MGI:2447427 Tgfbrap1 "transforming growth factor, beta receptor associated protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 84/325 (25%), Positives = 152/325 (46%)
Query: 655 DEDLILQHLGWIADINAVLAVKVLTS----EKRINQLSPDKVIAAIDSKKVEILQRYLQW 710
D++L+ H W+ + + V++ T E++ +PD +I+++ K + L +YL+
Sbjct: 538 DQELVWTHADWLLQKSEEIGVQIFTKRPLDEQQQTSFNPDNIISSL-KKYPKALVKYLEH 596
Query: 711 LIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQ 770
L+ D+ ++HT A+ + EE + + S+G GK+ + Q
Sbjct: 597 LVIDRRLQKEEYHTHLAI--------LYLEEV--------LRQRVSTG-GKD-VEATETQ 638
Query: 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQ 830
+L+ LQ SDLY + + ++G+ L +E AIL+ KLG+ L IL ++ D AAE
Sbjct: 639 AKLRRLLQKSDLYRVHLLKEKVQGAGLPMESAILHGKLGEHEKALHILVHEMGDFSAAED 698
Query: 831 YC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLS 883
YC + G+ A Q LL MYL + + + AAV LL++H D QVL+ L
Sbjct: 699 YCLWSSEGQGAACRQRLFHTLLAMYLRAGPSAQDLTVAAVDLLNHHAREFDVTQVLQLLP 758
Query: 884 PDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLC 943
+QL + Q+ L+++ ++ +++ + V++++ LC
Sbjct: 759 DTWSVQLLCPFLMGAMRDSIHARRTTQVALGLAKSENLIYMYDKMKLKGNAVRLSERELC 818
Query: 944 DSCHARLGTKLFAMYPDDTIVCYKC 968
C G +F YP+ +V C
Sbjct: 819 QLCQNPFGEPVFVRYPNGGLVHTHC 843
|
|
| UNIPROTKB|Q8WUH2 TGFBRAP1 "Transforming growth factor-beta receptor-associated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
Identities = 91/339 (26%), Positives = 151/339 (44%)
Query: 655 DEDLILQHLGWIADINAVLAVKVLTS----EKRINQLSPDKVIAAIDSKKVEILQRYLQW 710
DE+L+ + W+ + + V+V T E++ N +PD +I + K + L +YL+
Sbjct: 538 DEELVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCL-KKYPKALVKYLEH 596
Query: 711 LIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQ 770
L+ D+ ++HT A+ + + SG G + ET Q
Sbjct: 597 LVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGK---GAEATET---------------Q 638
Query: 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQ 830
+L+ LQ SDLY +L+ ++G+ L +E AIL+ KLG+ L IL +L+D AAE
Sbjct: 639 AKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAED 698
Query: 831 YC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLS 883
YC GR + Q LL +YL + + AAV LL+ H D QVL+ L
Sbjct: 699 YCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELAVAAVDLLNRHATEFDAAQVLQMLP 758
Query: 884 PDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLC 943
+QL + Q+ L+R+ ++ +++ + +Q++D+ LC
Sbjct: 759 DTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLC 818
Query: 944 DSCHARLGTKLFAMYPDDTIVCYKCY--RRQGESTSITG 980
C +F YP+ +V C R S+S G
Sbjct: 819 QICQNPFCEPVFVRYPNGGLVHTHCAASRHTNPSSSSPG 857
|
|
| UNIPROTKB|I3LIP2 TGFBRAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 6.5e-30, Sum P(4) = 6.5e-30
Identities = 89/329 (27%), Positives = 144/329 (43%)
Query: 650 LEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQ---LSPDKVIAAIDSKKVEILQR 706
L S D DL+ + W+ + + V+V T +Q +PD +I + K L +
Sbjct: 533 LTYSLDPDLVWTYADWVLQKSQEVGVQVFTKRPLDDQQGSFNPDDIITCL-KKYPRALVK 591
Query: 707 YLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQ 766
YL+ L+ D+ ++HT A+ E +++ G+ A G + ETR+
Sbjct: 592 YLEHLVMDRRLQREEYHTHLAMLYLD---EVLQQKPGANATGAAVTETRA---------- 638
Query: 767 CPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSE 826
+L+ LQ SD Y +LD I G+ L +E AIL+ KL Q L+IL +L D
Sbjct: 639 -----KLRHLLQKSDSYRVHFLLDRIRGAGLPMESAILHGKLEQHEDALRILVHELADFP 693
Query: 827 AAEQYCA--EIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVL 879
AAE YC GR Y Q LL +YL + AAV LL+ H D QVL
Sbjct: 694 AAEDYCLWRSEGRDPPYRQRLFHLLLALYLGPGPSSTELTVAAVDLLNRHAAEFDAAQVL 753
Query: 880 ETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQIND 939
+ L +QL + Q+ L+++ ++ + +++ + V+++D
Sbjct: 754 QLLPGSWSVQLLCPFLTGAVRDSIHARRTTQVAVGLAKSENLIYKYDKMKLKGSSVRLSD 813
Query: 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
+ LC C F +P+ +V C
Sbjct: 814 KKLCQLCQTPFSEPAFVRFPNGGLVHTHC 842
|
|
| UNIPROTKB|F1P4R5 TGFBRAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 9.6e-29, Sum P(4) = 9.6e-29
Identities = 63/230 (27%), Positives = 107/230 (46%)
Query: 757 SGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQ 816
SG N + + +L+ LQ SDLY +LD I G++L +E AILY KL + L
Sbjct: 626 SGTTDNCMETIELLLKLRSLLQKSDLYRIHFILDKIRGTDLHMESAILYGKLEEHEKALH 685
Query: 817 ILALKLEDSEAAEQYCA--EIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNH 869
IL +L+D AAE+YC R Y + LL +YL+ + AAV LL+NH
Sbjct: 686 ILVHELKDFRAAEEYCIWNSENRDLQYRRRLFHMLLSVYLNPDSSDCALVMAAVDLLNNH 745
Query: 870 GESLDPLQVLETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLE 929
D VL+ + +QL S + Q+ L++A ++ + +++
Sbjct: 746 AAEFDAALVLQLVPDSWSVQLLSPFLAGAVRQSIHTKRMTQVALGLAQAENLIYKYEKVK 805
Query: 930 ERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSIT 979
+ + ++D+ +C C F YP+ +V C + +++++T
Sbjct: 806 HKGAPILLSDKKVCQVCQNPFCEPAFVRYPNGGVVHTHCAANRHQNSNVT 855
|
|
| UNIPROTKB|F1MWF9 TGFBRAP1 "Transforming growth factor-beta receptor-associated protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 89/329 (27%), Positives = 142/329 (43%)
Query: 650 LEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLS---PDKVIAAIDSKKVEILQR 706
L S+D DL+ +H W+ + + V+V T Q S PD +I+ + K + L +
Sbjct: 533 LTYSTDPDLVWRHADWVLQRSQEVGVQVFTKRPLDEQQSGFNPDDIISCL-KKYPQALVK 591
Query: 707 YLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQ 766
YL+ L+ ++ ++HT A+ E ++ + ++ ET
Sbjct: 592 YLEHLVTERRLQKEEYHTHLAVLYLD---EVLQQRPCTPDKDAEVTET------------ 636
Query: 767 CPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSE 826
Q +L+ LQ SDLY ++D G+ L LE AIL+ KL Q L IL +L D
Sbjct: 637 ---QAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAILHGKLEQHEEALHILVHELADFP 693
Query: 827 AAEQYCA--EIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVL 879
AAE YC GR Y Q LL +YL AAV LL+ H D QVL
Sbjct: 694 AAEDYCLWRSEGRDPPYRQRLFHLLLAVYLGPGPAAPARTVAAVDLLNRHAVEFDAAQVL 753
Query: 880 ETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQIND 939
+ L +QL + Q+ L+R+ ++ + +++ + V+++D
Sbjct: 754 QLLPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLIYKYDKMKLKGSSVRLSD 813
Query: 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
+ LC C +F YP+ +V C
Sbjct: 814 KKLCQMCQNPFLEPVFVRYPNGGLVHTHC 842
|
|
| ZFIN|ZDB-GENE-070410-66 tgfbrap1 "transforming growth factor, beta receptor associated protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 91/331 (27%), Positives = 148/331 (44%)
Query: 654 SDEDLILQHLGWIADINAVLAVKVLT----SEKRINQLSPDKVIAAIDSKKVEILQRYLQ 709
S+ DL+ ++ W + + V++ T SE+R QL+ D VI + K + L +L+
Sbjct: 537 SNLDLVWRYADWALQKDQKIGVQIFTKRPTSEERRGQLNADDVITYLQ-KHSQALLLFLE 595
Query: 710 WLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPV 769
L+ ++ ++HT A+ A+ + S S+ Q+ R
Sbjct: 596 HLVLEKKLQKEKYHTNLAVLYAERVLGLISRPSTSEE---QLSAAR-------------- 638
Query: 770 QERLQIFLQSSDLYDPEDVLDLIEGSELWL-EKAILYRKLGQETLVLQILALKLEDSEAA 828
++LQ L+ S+LY + +L I+ SEL L E+A L+ KL + L +L +L+DS AA
Sbjct: 639 -QKLQRLLKESNLYRVQLLLGKIQDSELLLLERATLHGKLEEHDKALHVLVHQLKDSSAA 697
Query: 829 EQYC--AEIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLET 881
E+YC A + +Y Q LL +YLD AAV LL+ H E D ++VL+
Sbjct: 698 EEYCSWASASQDSSYRQNLFHQLLSVYLDPDVPGGAQTVAAVDLLNRHAEVFDAVRVLKL 757
Query: 882 LSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDES 941
L D L L + Q+ L+RA ++ RL+ R V ++++
Sbjct: 758 LPEDWSLPLLRPFLCGAMRATVHARCTSQVALGLARAQNLQLLHDRLKYRGGPVLVSEKK 817
Query: 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972
C CH A P T V C ++
Sbjct: 818 GCQLCHNTFSEPDCACLPGGTPVHINCVAKK 848
|
|
| UNIPROTKB|A7MB11 TGFBRAP1 "Transforming growth factor-beta receptor-associated protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 90/329 (27%), Positives = 142/329 (43%)
Query: 650 LEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLS---PDKVIAAIDSKKVEILQR 706
L S+D DL+ +H W+ + + V+V T Q S PD +I+ + K + L +
Sbjct: 533 LTYSTDPDLVWRHADWVLQRSQEVGVQVFTKRPLDEQQSGFNPDDIISCL-KKYPQALVK 591
Query: 707 YLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQ 766
YL+ L+ ++ ++HT A+ E ++ + ++ ET
Sbjct: 592 YLEHLVTERRLQKEEYHTHLAVLYLD---EVLQQRPCTPDKDAEVTET------------ 636
Query: 767 CPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSE 826
Q +L+ LQ SDLY ++D G+ L LE AIL+ KL Q L IL +L D
Sbjct: 637 ---QAKLRRLLQESDLYRVHFLMDRTRGAGLPLESAILHGKLEQHEEALHILVHELADFP 693
Query: 827 AAEQYCA--EIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVL 879
AAE YC GR Y Q LL +YL AAV LL+ H D QVL
Sbjct: 694 AAEDYCLWRSEGRDPPYRQRLFHLLLAVYLGPGPAAPARTVAAVDLLNRHAVEFDAAQVL 753
Query: 880 ETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQIND 939
+ L +QL + Q+ L+R+ ++ + +++ + V+++D
Sbjct: 754 QLLPGTWSVQLLRPFLMGAMRDSIHARRTTQVAVGLARSENLIYKYDKMKLKGSSVRLSD 813
Query: 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKC 968
E LC C +F YP+ +V C
Sbjct: 814 EKLCQMCQNPFLEPVFVRYPNGGLVHTHC 842
|
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| DICTYBASE|DDB_G0279169 vps39 "citron-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 1.0e-26, Sum P(4) = 1.0e-26
Identities = 85/320 (26%), Positives = 150/320 (46%)
Query: 658 LILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDS 717
+IL+H W+ A+K+ T +++ + LSPD VI + +L+ YL+ +I D S
Sbjct: 525 IILEHSKWVLQKCPEDALKIFTVDRK-DPLSPDDVIPHLKQCAPSLLRPYLEHIINDPIS 583
Query: 718 DDT--QFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQI 775
+ ++H S +E ++ S A + G + GK S ++ ++
Sbjct: 584 PNKNPEYHNQLVFEYLGSILELIKQTPNS-AIVREPGLIPA---GKESGELGELRTKIIQ 639
Query: 776 FLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC--- 832
FL++S Y PE +L ++L+ E+AIL K+G+ L I A KL++ AE+YC
Sbjct: 640 FLENSKYYLPEKMLSRFPSNDLYEERAILLSKIGRHEQALAIYAHKLKNFAMAEEYCDRH 699
Query: 833 ----AEIGRPDAYMQLLDMYLDSQDGK-EPMFKAAVRLLHNHGESLDPLQVLETLSPDMP 887
+E R D Y+ LL++YL D P+ A++LL+ H S++ + L L + P
Sbjct: 700 YNKDSEESR-DVYLSLLNVYLKPTDANTSPLLDPALKLLNKHYRSINTPKALSLLPLNTP 758
Query: 888 LQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCH 947
+ QIV NL ++ + + + ++ ++I ++ C C+
Sbjct: 759 IDQLYPFFESVIRDNTKTKRDNQIVKNLFKSENFKIKDELSQLKTGVIKITEDLTCPICN 818
Query: 948 AR-LGTKLFAMYPDDTIVCY 966
LGT+ F PD T + Y
Sbjct: 819 KIFLGTQAFVARPDGTALHY 838
|
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| UNIPROTKB|E2RKZ9 TGFBRAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 91/342 (26%), Positives = 149/342 (43%)
Query: 650 LEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQ 709
L S D++L+ ++ W+ + + V+V T KR L + DS + L++Y +
Sbjct: 533 LTYSLDQELVWKYADWVLQKSEEVGVQVFT--KR--PLDEQQNSFNPDSI-ITCLKKYPK 587
Query: 710 WLIEDQDS---DDTQFHTLYALSLAKSAIE-AFEEESGSKAFGTQMGETRSSGYGKNSIF 765
L++ + D Y LA ++ +E SG+ + G + ET
Sbjct: 588 ALVKYLEHLVIDRRLQKEEYHTHLALLYLDKVLQERSGANSKGVEATET----------- 636
Query: 766 QCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDS 825
Q +LQ LQ SDLY ++D I G+ L +E AIL+ KL + L+IL +L+D
Sbjct: 637 ----QVKLQHLLQKSDLYRVHILIDRIRGAGLPMESAILHGKLEEHEEALRILVHELQDF 692
Query: 826 EAAEQYCA--EIGRPDAYMQ-----LLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQV 878
AAE YC GR Y Q LL MYL + AA LL+ H + D +V
Sbjct: 693 SAAEDYCLWRSEGRDPPYRQRLFHTLLAMYLQPGPAAPELAVAAADLLNRHAANFDAARV 752
Query: 879 LETLSPDMPLQLASDTIXXXXXXXXXXXXQGQIVHNLSRAVDIDARLARLEERSRHVQIN 938
L+ L +QL + Q+ L+R+ ++ + +++ + VQ++
Sbjct: 753 LQLLPGGWSVQLLRPFLTGAVRNSVHARRTTQVALGLARSENLIYKYDKMKLKGSSVQLS 812
Query: 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITG 980
D+ LC C +F YP+ +V C + + S G
Sbjct: 813 DKKLCQMCQNPFCEPVFVRYPNGGLVHTHCAASRHTNPSSPG 854
|
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| DICTYBASE|DDB_G0277663 DDB_G0277663 "Transforming growth factor-beta receptor-associated protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 1.3e-23, Sum P(5) = 1.3e-23
Identities = 52/214 (24%), Positives = 99/214 (46%)
Query: 199 VIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVI 258
V+ ++L L E + G F + +EI + T+ W S+ VG+ Y++ +G +
Sbjct: 129 VVTKRKLTLYEFI-GVFDMYREIALPELALTVEWCKTSLCVGSRKEYAIVDADSGLYKSL 187
Query: 259 FTLPDVSCP-PMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYV 317
L D + P P KL+ ++K LL ++ V VD G V GS+++ +P ++ L Y+
Sbjct: 188 LEL-DKNVPGPRTKLILDQEKFLLTTVDLSVLVDLQGDIVQGSIIWDSNPMSMSYLEPYL 246
Query: 318 V-VLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATD--------EECGAGKLLVV---A 365
+ +L + ++ K+ +Q + G ++ E G GK +V +
Sbjct: 247 ITILHNRCINIHDMKNQKLIQELNNSSHNKGASSSSSVISFQQIFEGRGNGKDFIVLYGS 306
Query: 366 TPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAE 399
+P V C ++ + L+ + + +EAI L E
Sbjct: 307 SPNSVYCLHVGNIDDLVHQLINRGEHEEAIRLFE 340
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00035535001 | SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (1011 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 997 | |||
| pfam10367 | 109 | pfam10367, Vps39_2, Vacuolar sorting protein 39 do | 2e-42 | |
| pfam00637 | 143 | pfam00637, Clathrin, Region in Clathrin and VPS | 3e-08 | |
| smart00299 | 140 | smart00299, CLH, Clathrin heavy chain repeat homol | 1e-05 | |
| pfam00780 | 266 | pfam00780, CNH, CNH domain | 1e-05 |
| >gnl|CDD|150957 pfam10367, Vps39_2, Vacuolar sorting protein 39 domain 2 | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-42
Identities = 45/109 (41%), Positives = 65/109 (59%)
Query: 863 VRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDID 922
+ LL+ HGE +DP VL+ L D+PLQL + R LR R+ Q+V NL +A ++
Sbjct: 1 LDLLNKHGERIDPASVLDLLPDDVPLQLLESFLERALRNSTEQKREAQVVKNLLKAENLQ 60
Query: 923 ARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971
L+ RSRHV++ +ES+C CH RLG +F +YP+ +V Y C R
Sbjct: 61 VEEELLKLRSRHVRVTEESVCAVCHKRLGNSVFVVYPNGVVVHYGCADR 109
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This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11. Length = 109 |
| >gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 36/167 (21%)
Query: 685 NQLSPDKVI-AAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESG 743
+ + +V+ +E L YL+ +++ ++ T AK
Sbjct: 6 DPIDISRVVKLFEKRGLLEELIPYLESALKENSRENPALQTALLELYAKYED-------- 57
Query: 744 SKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAI 803
E+L+ FL+ ++ YD E V L E ++L+ E I
Sbjct: 58 --------------------------PEKLEEFLKKNNNYDLEKVAKLCEKADLYEEAVI 91
Query: 804 LYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD 850
LY+K G + +L KL+ + A +Y + P+ + +LL+ LD
Sbjct: 92 LYKKNGNYKEAISLL-KKLKLYKDAIEYAVKSNDPELWEKLLNALLD 137
|
Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Length = 143 |
| >gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 36/167 (21%)
Query: 685 NQLSPDKVIAAI-DSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESG 743
+ + +V+ +E L YL+ + +S++ T AK
Sbjct: 6 DPIDVSEVVELFEKRNLLEELIPYLESAL-KLNSENPALQTKLIELYAKYD--------- 55
Query: 744 SKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAI 803
ERL S+ YD E V L E ++L+ E
Sbjct: 56 ----------------------PQKEIERLDNK---SNHYDIEKVGKLCEKAKLYEEAVE 90
Query: 804 LYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD 850
LY+K G + L L + E A +Y + P+ + ++L LD
Sbjct: 91 LYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLD 137
|
Length = 140 |
| >gnl|CDD|216115 pfam00780, CNH, CNH domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 51/300 (17%), Positives = 96/300 (32%), Gaps = 80/300 (26%)
Query: 34 ISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVAD-SPVE 92
+ P + Q L+ +GT+ G +L ++ V + V
Sbjct: 1 VCPATGGQRLL-LGTEEGLYLL---------------------NIDESGPVRIVKLFSVT 38
Query: 93 SIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLEN 152
+ VL++ +L L D+ L++ +S + + +S S L E
Sbjct: 39 QLAVLEEFNLLLSL-SDKQLYVYP---------------LSALDSKELSSKSAPQKLPET 82
Query: 153 NSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVN 212
S A A +C G V + + + L E
Sbjct: 83 KGCSFFARA---------------------------GYCGGR-FLVVAVKRTIKLYEWYE 114
Query: 213 G---SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPM 269
+ KE V ++ +L + VG G+ L TG + + D S
Sbjct: 115 PLKKFHKLFKEFYVPAEVFSIAFLKPKLCVGCAKGFELVDLDTGATQSLLDPADQSLDFA 174
Query: 270 LKLLS---------KEQKVLLLVDNVGVFVDAHGQPV-GGSLVFRKSPDAVGELSMYVVV 319
+ + + + LL D V+V+ G+ L + +P++V L Y++
Sbjct: 175 ARKENLKPLAVVRLSDDEFLLCYDEFAVYVNLQGRRSRDQELEWEGAPESVAYLYPYLLA 234
|
Domain found in NIK1-like kinase, mouse citron and yeast ROM1, ROM2. Unpublished observations. Length = 266 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 100.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 100.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 100.0 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 100.0 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 100.0 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 99.94 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 99.88 | |
| COG5422 | 1175 | ROM1 RhoGEF, Guanine nucleotide exchange factor fo | 99.87 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 99.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 99.62 | |
| KOG4305 | 1029 | consensus RhoGEF GTPase [Signal transduction mecha | 99.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.19 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.15 | |
| PF05131 | 147 | Pep3_Vps18: Pep3/Vps18/deep orange family; InterPr | 97.97 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 97.95 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.79 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.75 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 97.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 97.26 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.24 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.24 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 97.1 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 97.04 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.96 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 96.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.82 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.81 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 96.18 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.17 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.16 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 95.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.9 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 95.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 95.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.88 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 95.67 | |
| PTZ00421 | 493 | coronin; Provisional | 95.59 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 95.49 | |
| PTZ00420 | 568 | coronin; Provisional | 95.47 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 95.27 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 95.19 | |
| PTZ00420 | 568 | coronin; Provisional | 95.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 95.0 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 94.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 94.69 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 94.61 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 94.58 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 94.46 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 94.42 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 94.24 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 94.2 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 94.12 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 94.01 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 93.95 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 93.73 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 93.65 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 93.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.59 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 93.58 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.54 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.41 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 93.29 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 93.17 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 92.92 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 92.75 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 92.52 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 92.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.33 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 92.2 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 92.19 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 91.88 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 91.7 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 91.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 91.63 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 91.6 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 91.59 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 91.38 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 91.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 90.86 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 90.71 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 90.52 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 90.38 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 90.34 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 90.31 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 90.22 | |
| PF14763 | 353 | HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal | 90.2 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 89.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 89.85 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 89.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 89.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 89.55 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 89.37 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 89.36 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 89.3 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 89.27 | |
| PF09943 | 101 | DUF2175: Uncharacterized protein conserved in arch | 89.21 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 89.03 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 89.01 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 88.91 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 88.66 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 88.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 87.83 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 87.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 87.46 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 87.33 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.21 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 87.16 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 87.12 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 86.5 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 86.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 85.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 85.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 85.89 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 85.65 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 85.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 85.03 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 84.99 | |
| COG4847 | 103 | Uncharacterized protein conserved in archaea [Func | 84.96 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 84.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 84.22 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 83.97 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 83.76 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 83.57 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 83.24 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 83.05 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 83.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 82.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 82.79 | |
| smart00132 | 39 | LIM Zinc-binding domain present in Lin-11, Isl-1, | 82.51 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 82.35 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 82.06 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 81.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 81.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 80.06 |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-101 Score=907.48 Aligned_cols=830 Identities=29% Similarity=0.428 Sum_probs=675.8
Q ss_pred ceeeee-EEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 30 RSLSIS-PISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 30 ~~~~I~-ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
....++ |+++||+.||+||.+|.|++|.+.+...+++... .....++.++ |+|+||.+|.+++..+.+++ +|
T Consensus 14 ~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~----~~~~~~~~~~--~~kk~i~~l~~~~~~~~ll~-l~ 86 (877)
T KOG2063|consen 14 LPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL----VTETVKFEKE--FSKKPINKLLVCASLELLLI-LS 86 (877)
T ss_pred cCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhh----hcchhHHhhh--hccchhHHHhhcchhcchhe-ec
Confidence 345566 9999999999999999999999998876543211 1233555555 78999999999999997777 99
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+.+.+|.+++++|.+..+++||++.|+.+... +++|
T Consensus 87 dsqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~---------------------~s~~---------------------- 123 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSGTRLKGASLFTIDLRP---------------------ISTG---------------------- 123 (877)
T ss_pred CCcceeeecCcccccccccccccceeecccccc---------------------ccCC----------------------
Confidence 999999999999999999999999999976421 1110
Q ss_pred cccCCceEEEEEECceEEEEEEeCC-eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceee-ecCCC--C
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVI-FTLPD--V 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l-~~~~~--~ 264 (997)
.....+|++++|++..+.|.+. .+...+++.+++.|++++|++..+|+|..+.|++++..+....+. |+.+. .
T Consensus 124 ---~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~ 200 (877)
T KOG2063|consen 124 ---PSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE 200 (877)
T ss_pred ---cceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccc
Confidence 1246799999999999999875 788889999999999999999999999999999998765444443 44442 6
Q ss_pred CCCCceEEcCCCCeEEEEeCCeEEEEccCCCc-cccccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEE-ecC
Q 043572 265 SCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQP-VGGSLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAV-TFG 342 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~-~r~~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i-~~~ 342 (997)
+.+|+|++++++.+++++.|++|+|||.+|.+ .++++.|+.+|.++++.+||+++..+..||||+..++++||+| +++
T Consensus 201 s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~ 280 (877)
T KOG2063|consen 201 SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLS 280 (877)
T ss_pred cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEecccchhhcccCceEEEEccccEEEEeccCHHHhhcccccc
Confidence 78999999996669999999999999999999 7779999999999999999999999999999999999999999 777
Q ss_pred CCCCCCceecccccCCCcEEEEEcCCeEEEEeecC-HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHH-H
Q 043572 343 GEGGGQCIATDEECGAGKLLVVATPTKVICYQKVP-SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQI-G 420 (997)
Q Consensus 343 ~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~-~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~-~ 420 (997)
.. ..+++. .++++++++-+.+|.+.|+| +..||++|+++++|++|++|++.+....++.+..++.++.++ |
T Consensus 281 ~~---~~l~s~----~~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a 353 (877)
T KOG2063|consen 281 NG---RSLLSA----HNGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDA 353 (877)
T ss_pred cc---ceeeec----CCcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 73 555543 23678888999999999999 999999999999999999999998876666667788888888 8
Q ss_pred HHHhhhhcHHHHHHHHHhcCCCCcccc---cccccCCCC---ccccccc--CCCCCCCCCCCCCcchhhcchhhHHHHHH
Q 043572 421 FLLLFDLHFEEAVDHFLHSETMQPSEV---FPFIMRDPN---RWSLLVP--RNRYWGLHPPPVPVEDVVDNGLMAIQRAI 492 (997)
Q Consensus 421 ~~lf~~~~f~~A~~~f~~~~~~Dp~~l---~p~f~~~~~---~~~~~~~--~~~~w~~~~~~~~~~~~i~~~l~~l~~~~ 492 (997)
+.+|.+++|++||.+|.++ ..||+.+ ||++++.+. +|...+| ...+|+...++..+.+..
T Consensus 354 ~~lf~q~~f~ea~~~F~~~-~~d~~~vi~lfP~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~----------- 421 (877)
T KOG2063|consen 354 FELFLQKQFEEAMSLFEKS-EIDPRHVISLFPDLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIV----------- 421 (877)
T ss_pred HHHHHhhhHHHHHHHHHhh-ccChHHHHHhchhhcCCcccccceeeeccCchhhhccCcccchhhhhhh-----------
Confidence 9999999999999999986 4799885 888777665 5555555 335555544333332221
Q ss_pred HhhhcCcccccCCCCCCCCCchHHHHHHHHHHH-HHHHHHhhh----hhhhhHHHHHHHHHHHHHHHhccCchhhhcccC
Q 043572 493 FLRKAGVETAVDDGFLSNPPSRAELLELAIRNI-TRYLEVSRK----KELTILVKEGVDTLLMYLYRALNRVHDMENLAP 567 (997)
Q Consensus 493 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L-~~yL~~~r~----~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~ 567 (997)
+++..+... .. ..+...++ ..|+..... +.-.+.++++|||+|++||+++++ ....++++
T Consensus 422 ylt~~r~~~-------------~~-~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~-~~v~~llr 486 (877)
T KOG2063|consen 422 YLTQSRREE-------------NK-KLNKYKMLYMNYFKNTLISELLKSDLNDILELIDTTLLKCYLETNP-GLVGPLLR 486 (877)
T ss_pred HhHHHHHHH-------------HH-HHHHhhhhHHhhhhccCcchhhccchHHHHHHHHHHHHHHHHhcCc-hhhhhhhh
Confidence 121111000 00 00111111 133322211 112245789999999999999996 57778887
Q ss_pred CCC-cccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHH
Q 043572 568 SEN-SCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEA 646 (997)
Q Consensus 568 ~~n-~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~ 646 (997)
.+| +|++++++.+|.++++|.+|+.||+.+|+|++||++|+++.+...+ .|.. +..|.+ .+
T Consensus 487 len~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~---~d~~-----------~~~~~e----~i 548 (877)
T KOG2063|consen 487 LENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSD---TDSF-----------QLDGLE----KI 548 (877)
T ss_pred ccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccc---cccc-----------hhhhHH----HH
Confidence 665 9999999999999999999999999999999999999999985421 2221 223334 35
Q ss_pred HHhcCCC--CCHHHHHHHHhhhhccCchhhhhhcccc-c-ccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHH
Q 043572 647 SKILEES--SDEDLILQHLGWIADINAVLAVKVLTSE-K-RINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQF 722 (997)
Q Consensus 647 ~~~L~~~--~~~~li~~~~~wll~~~p~~~l~if~~~-~-~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~ 722 (997)
++||++. ++.++||+|+.|+++.+|+.|++||++. . .++++++++|+++|.+..+.+++.||||++.+++..++.|
T Consensus 549 i~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~l 628 (877)
T KOG2063|consen 549 IEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLL 628 (877)
T ss_pred HHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHH
Confidence 6777775 4569999999999999999999999983 2 3589999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHH-HHHHHHHHhhcCCCCChHHHHhhccCCCchHHH
Q 043572 723 HTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCP-VQERLQIFLQSSDLYDPEDVLDLIEGSELWLEK 801 (997)
Q Consensus 723 h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~ 801 (997)
||.|+.+|+..+.+ ... ++.+ |++- .+. .|++|..||+.|+.|+++.+|..++...|++|+
T Consensus 629 ht~ll~ly~e~v~~----~~~---~~~k---------g~e~--~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~ 690 (877)
T KOG2063|consen 629 HTVLLKLYLEKVLE----QAS---TDGK---------GEEA--PETTVREKLLDFLESSDLYDPQLLLERLNGDELYEER 690 (877)
T ss_pred HHHHHHHHHHHHhh----ccC---chhc---------cccc--hhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHH
Confidence 99999998765543 100 1100 1111 112 499999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCC-----chHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHH
Q 043572 802 AILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGR-----PDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPL 876 (997)
Q Consensus 802 ~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~-----~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~ 876 (997)
+++++|+|+|++||.++++.|+|+++|+.||..++. .+.|..+|+.|+++..+.....-.+..+|+.|++.+|+.
T Consensus 691 aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~ 770 (877)
T KOG2063|consen 691 AILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLA 770 (877)
T ss_pred HHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHH
Confidence 999999999999999999999999999999998764 579999999999983322222345888999999999999
Q ss_pred HHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEE
Q 043572 877 QVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFA 956 (997)
Q Consensus 877 ~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~ 956 (997)
.|++++|++|++.++.+|+.+.|+.+.+.+|+.++.+++.++|.+....++.+.++.+++|+.+..|.+|.|+|+.++|+
T Consensus 771 ~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q~E~~~~~~~l~~~~s~~~~l~~~~~C~~C~k~i~~s~f~ 850 (877)
T KOG2063|consen 771 QVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQAELLPSTEELNKLRSSKIQLNDESLCSICEKRIGTSVFV 850 (877)
T ss_pred HHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhcchHHHHHHhhcceEEEchhhHhHHHHhhhcCeeEE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EcCCCeEEEeccccccCcccCCCCCC
Q 043572 957 MYPDDTIVCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 957 v~p~g~~~H~~C~~~~~~~~~~t~~~ 982 (997)
+||+|+++|++|.++.+..-..+++.
T Consensus 851 ryp~g~lvh~~C~~~~q~~~~~~~~~ 876 (877)
T KOG2063|consen 851 RYPNGILVHLSCAKDLQGSKAVKNEG 876 (877)
T ss_pred ECCCCcEEEEEeechhccccccCCCC
Confidence 99999999999999886543334443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=416.21 Aligned_cols=715 Identities=19% Similarity=0.236 Sum_probs=472.9
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
-.|+|.+..+..+.+||..|.++.+....... +.+ .-++. ..+.+.+..|--||+
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~--------------~~~------~~s~~-----~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNPK--------------TNF------DHSSS-----ILEGEYVASCSDDGK 94 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCccc--------------ccc------ccccc-----ccCCceEEEecCCCc
Confidence 47889998999999999999999888876541 121 11122 455666788777999
Q ss_pred EEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 112 LFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
+.+..+.+-+-.++...-+-...++++|+...
T Consensus 95 v~I~sl~~~~~~~~~df~rpiksial~Pd~~~------------------------------------------------ 126 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQYDFKRPIKSIALHPDFSR------------------------------------------------ 126 (846)
T ss_pred EEEeeccCCccceeEecCCcceeEEeccchhh------------------------------------------------
Confidence 99999877665555555566677777764211
Q ss_pred CCceEEEEEECce-EEEEEEeCCeEEEEEeEe---cCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCCCCCC
Q 043572 192 RGDNVFAVIIGKR-LVLIELVNGSFVILKEIQ---CMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 192 ~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~---~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
...+.+|+.+++ +.+|+.+. |...+.+. .-++|.++.|.|+.|.++...|..++|+.+++....++.+..+.+
T Consensus 127 -~~sk~fv~GG~aglvL~er~w--lgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 127 -QQSKQFVSGGMAGLVLSERNW--LGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred -hhhhheeecCcceEEEehhhh--hcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCC
Confidence 112345665555 88887543 33222222 234679999999999999999999999988877766766654433
Q ss_pred C-----ceEEcCCCCeEEEE-eCCeEEEEccCCCccc-cccccCCC-CCeEEEe---CcEEEEEE--CCeEEEEecCC--
Q 043572 268 P-----MLKLLSKEQKVLLL-VDNVGVFVDAHGQPVG-GSLVFRKS-PDAVGEL---SMYVVVLR--GGKMELYHKKS-- 332 (997)
Q Consensus 268 p-----~i~~~~~~~e~Ll~-~~~~g~fv~~~G~~~r-~~i~w~~~-P~~i~~~---~PYll~~~--~~~ieI~~~~~-- 332 (997)
| .+.-.+ +.-++++ .++.-++.=.++.... .+...+.. ...+..+ ..|+-++. ...+.+-....
T Consensus 204 ~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~~~s~~a~~~~~~~~~~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~ 282 (846)
T KOG2066|consen 204 PELFPPHLHWQD-EDRLVIGWGDSVKICSIKKRSSSEARSFRLPSLKKVEIVSHFETSFYISGLAPLGDQLVVLGFDKDI 282 (846)
T ss_pred cccCCCceEecC-CCeEEEecCCeEEEEEEecccccccccccCCccceeeeEEEeeeeeeeeccccccceeEEEeeeccc
Confidence 3 333333 3355555 4444444222332221 13444443 2233333 33555543 23333322110
Q ss_pred --C---------------ceEEEEecCCCC-C---------CCceecccccCC----CcEEEEEcCCeEEEEeecCHHHH
Q 043572 333 --G---------------ICVQAVTFGGEG-G---------GQCIATDEECGA----GKLLVVATPTKVICYQKVPSEEQ 381 (997)
Q Consensus 333 --~---------------~lvQ~i~~~~~~-~---------~~~i~~~~~~~~----g~~~~v~s~~~V~~l~~~~~~~q 381 (997)
+ ..++-+..+... . .+..+.+|+.+. ...+|+.|+++|....+.+.++.
T Consensus 283 ~~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~Dal~~~~~e~~~~~DY~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dh 362 (846)
T KOG2066|consen 283 SEGEFTSARPSSRAKGNRPEIRIVSLNNDEICSDALIVRGFEELSINDYHLGGHPKTEPLYYIVSPKDIVVAKERDQEDH 362 (846)
T ss_pred ccccccccchhhhccCCCceEEeccccchhhhhhhhhhcchhhcCCccccccCCCCCCceEEEecCCceEEEeecCcchh
Confidence 0 112333222110 0 012223344321 13588999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh-cCCCC---ccccccccc-CCCC
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH-SETMQ---PSEVFPFIM-RDPN 456 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~-~~~~D---p~~l~p~f~-~~~~ 456 (997)
|++|++.++|++|+.+++......+ +-.+..+-..|-+||+..++|++|.....+ .|..- -.++|-+-. +...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~--~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE--RFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc--ccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 9999999999999999988664322 223556667777999999999999876654 11100 000110000 0000
Q ss_pred cccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHH-HHHHHHHhhhh
Q 043572 457 RWSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRN-ITRYLEVSRKK 535 (997)
Q Consensus 457 ~~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-L~~yL~~~r~~ 535 (997)
....+.|.+ |+.+-. ....+ |..||....+
T Consensus 441 ~Ia~~lPt~-------~~rL~p-----------------------------------------~vYemvLve~L~~~~~- 471 (846)
T KOG2066|consen 441 DIAPYLPTG-------PPRLKP-----------------------------------------LVYEMVLVEFLASDVK- 471 (846)
T ss_pred hhhccCCCC-------CcccCc-----------------------------------------hHHHHHHHHHHHHHHH-
Confidence 000011110 000000 01111 1111110000
Q ss_pred hhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCC----hhHHHHHHhhcCChHHHHHHHHHHH
Q 043572 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGH----LRTLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 536 ~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~----~~~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
...+.|-++=-.+|. +.|..+.++..++++.. -+.|+.||...++|.+|+.++.++.
T Consensus 472 ----~F~e~i~~Wp~~Lys---------------~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 ----GFLELIKEWPGHLYS---------------VLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----HHHHHHHhCChhhhh---------------hhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 011111121112222 23334444455544432 3559999999999999999999877
Q ss_pred HhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhH
Q 043572 612 RNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDK 691 (997)
Q Consensus 612 ~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~ 691 (997)
+.+.. +.+.. ..-.+.+.+-..-+|..+.+.++++++++ .+.+++..
T Consensus 533 ~~~vf----------------------------~lI~k---~nL~d~i~~~Iv~Lmll~skka~~lLldn--~d~ip~a~ 579 (846)
T KOG2066|consen 533 DKDVF----------------------------DLIKK---HNLFDQIKDQIVLLMLLDSKKAIDLLLDN--RDSISPSE 579 (846)
T ss_pred ChHHH----------------------------HHHHH---HhhHHHHHHHHHHHHccchhhHHHHHhhc--cccCCHHH
Confidence 54211 11111 11246677777788899999999999974 57899999
Q ss_pred HHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHH
Q 043572 692 VIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQE 771 (997)
Q Consensus 692 Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 771 (997)
|++.+.. .|..+..||..+..++......||..++++|. ++.|.
T Consensus 580 Vveql~~-~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYA-----------------------------------EyDrk 623 (846)
T KOG2066|consen 580 VVEQLED-NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYA-----------------------------------EYDRK 623 (846)
T ss_pred HHHHHhc-ChHHHHHHHHHHhhcCccccchhhhHHHHHHH-----------------------------------HHhHh
Confidence 9999985 45799999999998887778999999999882 48899
Q ss_pred HHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCC
Q 043572 772 RLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDS 851 (997)
Q Consensus 772 kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~ 851 (997)
+|+.||+.|++|++++++++|.+.++++|.|||+||||++.+||.+++++++|+++|++||+.++++++|..|+.+++..
T Consensus 624 ~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 624 KLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDK 703 (846)
T ss_pred hhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHh
Q 043572 852 QDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAV--DIDARLARLE 929 (997)
Q Consensus 852 ~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e--~l~~~~~~~~ 929 (997)
|.+ +..+|+ .+.++||..|+..||++..|+.+++-|.+++++++.+..-.+-...+...+ .+..++. +
T Consensus 704 -----Pe~--~~~ll~-i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~--~ 773 (846)
T KOG2066|consen 704 -----PEF--IKALLN-IGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFL--K 773 (846)
T ss_pred -----cHH--HHHHHH-hhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 444 566665 567799999999999999999999999999999986522111111122223 4444443 5
Q ss_pred hccCcEEEcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc
Q 043572 930 ERSRHVQINDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 930 ~~~~~v~I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~ 972 (997)
.+++++.+..+.+|..|..++.. ..++||.|||+||..|....
T Consensus 774 ~~~~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~ 821 (846)
T KOG2066|consen 774 TARRGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMME 821 (846)
T ss_pred HHhcCeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccH
Confidence 67899999999999999999974 34889999999999998765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=380.58 Aligned_cols=802 Identities=17% Similarity=0.148 Sum_probs=507.1
Q ss_pred CCCCceeeccccccccCCCCCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCcccccccccc
Q 043572 5 RPKSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTV 84 (997)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (997)
...+=.+|+...+++. .-..+ ..|+|++..+..+++||.+|.+..+.-.-..- ..|--
T Consensus 5 qWrrF~lFq~~~i~~~-----~~~~G-~~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~--------------~~fqa-- 62 (933)
T KOG2114|consen 5 QWRRFSLFQWKEIPSL-----ENFVG-NAISCCSSSTGSVVIGTADGRVVILNSSFQLI--------------RGFQA-- 62 (933)
T ss_pred hcceeeeeeeeecCCc-----ccCCC-CceeEEcCCCceEEEeeccccEEEecccceee--------------ehhee--
Confidence 3344455666666652 11233 49999999999999999999976554332110 11110
Q ss_pred ccCCCcceEEEeecccCcEEEEecC--C----eEEEeecCccccccccccccc-eEEEEe-ecccCCccccccccccccc
Q 043572 85 SVADSPVESIFVLDDVGKVLLLFCD--Q----CLFLTDSLLTQPLKKLGFLKG-ISVIAK-RIRTSDSESTNLLENNSVS 156 (997)
Q Consensus 85 ~~~~~~I~qi~vl~~~~~lLv~l~d--~----~l~~~~l~~l~~~~~~~~~kg-~~~f~~-~~~~~~~~~~~~~~~~~~~ 156 (997)
...+-|+++.++.+.+ +|+++.. + .|.+|++.-.++... +..-+ ...|.. ++....|.|.-.
T Consensus 63 -~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~------- 132 (933)
T KOG2114|consen 63 -YEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSLA------- 132 (933)
T ss_pred -cchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCCCCC-cceeeeeeeeccCCCCCCCcceEEE-------
Confidence 1233477777777777 7776653 2 578888755443211 11111 111110 010011111000
Q ss_pred cccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE-ECceEEEEEEe--CCeEEEE-EeEecCCcceEEEE
Q 043572 157 SLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELV--NGSFVIL-KEIQCMDGVKTMVW 232 (997)
Q Consensus 157 ~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~--~~~~~~~-kei~~~~~~~~l~~ 232 (997)
+. .....++|+ +.-.|.+|+=. .++-.+. -+....++|+.+++
T Consensus 133 --------------------------------Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 133 --------------------------------VS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred --------------------------------EE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 00 111234444 34445555422 1111121 12223457888888
Q ss_pred eCC--E-EEEEECCcEEEEEecCCcceeeecCCCCCCCCceEEcC-CCCeEEEEeCCeEEEEccCCCccccccccCCCCC
Q 043572 233 LND--S-IIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLS-KEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPD 308 (997)
Q Consensus 233 ~~~--~-l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~-~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~ 308 (997)
..+ . ++|++.+...++.+. |+.+.+-..+..+..-.+..+. ..++|++|.+++..|++.+|+...-++.-.....
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEE
Confidence 853 3 688899999999997 6663333366666666777775 3457999999999999999875422222223344
Q ss_pred eEEEeCcEEEEEEC-CeEEEEecCCCceEEEE---ecCCCCCCCc-----eecccccCCC-cEEEEEcCCeEEEEeecCH
Q 043572 309 AVGELSMYVVVLRG-GKMELYHKKSGICVQAV---TFGGEGGGQC-----IATDEECGAG-KLLVVATPTKVICYQKVPS 378 (997)
Q Consensus 309 ~i~~~~PYll~~~~-~~ieI~~~~~~~lvQ~i---~~~~~~~~~~-----i~~~~~~~~g-~~~~v~s~~~V~~l~~~~~ 378 (997)
...+.+-|++++++ .+.+.-+..+..-.+.+ ++++..++-. ++..+-.| + +.+++.+++.+.+|.+.|+
T Consensus 259 ~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w-~~~~~vltsdg~~~~L~ek~l 337 (933)
T KOG2114|consen 259 MLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEW-SFDCLVLTSDGVVHELIEKDL 337 (933)
T ss_pred EEEEecCEEEEEEccCCCCCcccCccchhheeehhhhcCcccchHHhHHHHHHHHHhc-CCcEEEEecCCceeeeeeccH
Confidence 44555578887764 22332222111111111 1122111100 01111123 4 6678889999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh-cCCCCcccccccccCCCCc
Q 043572 379 EEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH-SETMQPSEVFPFIMRDPNR 457 (997)
Q Consensus 379 ~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~-~~~~Dp~~l~p~f~~~~~~ 457 (997)
+.+++.|+++..|+.|+.||++... +.+.+..|+++||.++|.+|+|++|+++|++ .|.+||.+|+..|++
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLd---- 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLD---- 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcC----
Confidence 9999999999999999999988653 2456889999999999999999999999998 467888888877642
Q ss_pred ccccccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 043572 458 WSLLVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKEL 537 (997)
Q Consensus 458 ~~~~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~ 537 (997)
.+-+++|+.||+..+++.+
T Consensus 410 -------------------------------------------------------------aq~IknLt~YLe~L~~~gl 428 (933)
T KOG2114|consen 410 -------------------------------------------------------------AQRIKNLTSYLEALHKKGL 428 (933)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHccc
Confidence 2346889999999988877
Q ss_pred hhHHHHHHHHHHHHHHHhccCchhhhcccCCCC----cccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 538 TILVKEGVDTLLMYLYRALNRVHDMENLAPSEN----SCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 538 ~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n----~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
+. +..-|.|+.||++.++.+.|.+|++... .+|++.+.++|++.+++++...|..+.++|+.+|.++.+...+
T Consensus 429 a~---~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~n 505 (933)
T KOG2114|consen 429 AN---SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHN 505 (933)
T ss_pred cc---chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcC
Confidence 64 5677889999999999999999997433 6789999999999999999999999999999999998875532
Q ss_pred cCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCC---CCHHHHHHHHhhhhccCchhhhhhcccccc-cCCCCh
Q 043572 614 YSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEES---SDEDLILQHLGWIADINAVLAVKVLTSEKR-INQLSP 689 (997)
Q Consensus 614 ~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~---~~~~li~~~~~wll~~~p~~~l~if~~~~~-~~~l~~ 689 (997)
+. ++++|++.+ +-...+.+|+.||++++|++.+++|..... ..+-+-
T Consensus 506 -------------------------y~----eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~ 556 (933)
T KOG2114|consen 506 -------------------------YE----EALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGK 556 (933)
T ss_pred -------------------------HH----HHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCC
Confidence 11 455666654 356678899999999999999988865310 011111
Q ss_pred hH-------HHHHhh--ccChHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHH-H-----H-HHHHhh-cCccccCCc
Q 043572 690 DK-------VIAAID--SKKVEILQRYLQWLIEDQDSDDT--QFHTLYALSLAKS-A-----I-EAFEEE-SGSKAFGTQ 750 (997)
Q Consensus 690 ~~-------Vl~~L~--~~~~~~~~~YLE~li~~~~~~~~--~~h~~L~~lyi~~-~-----l-~~l~~~-~~~~~~~~~ 750 (997)
.. -++++. ..+++....||+.+......... .+...+..+++-. . + .....+ .........
T Consensus 557 ~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~ 636 (933)
T KOG2114|consen 557 GKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGF 636 (933)
T ss_pred CchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhccc
Confidence 11 122221 13456778888876543322111 1111121222100 0 0 000000 000000000
Q ss_pred CCccccCCCCCCC-cccHHHHHH----HHH------Hhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHH
Q 043572 751 MGETRSSGYGKNS-IFQCPVQER----LQI------FLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQIL 818 (997)
Q Consensus 751 ~~~~~~~~~~~~~-~~~~~~r~k----L~~------fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il 818 (997)
+-+ +......+. .+.+..+.. -.. ++.. -+.||.+.++-+++-.++.....++|++++...+-+...
T Consensus 637 ~sd-pq~kt~~~~~l~~~~~~~~~~~~~~~l~ksn~l~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~ 715 (933)
T KOG2114|consen 637 DSD-PQVKTTTLYDLYLELDAEDVPERTIILRKSNKLLDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYF 715 (933)
T ss_pred ccC-hhhhhccchhhHHHHHhhhcccccchhhhhcchhhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHH
Confidence 000 000000000 000011111 001 1111 135888999999998899999999999999999988888
Q ss_pred HHhcCCHHHHHHHHhhcC--CchHHHHHHHHhcCCCCCCchhHHHHHHHHHh--ccCCCCHHHHhhhCCCC--cchhhhH
Q 043572 819 ALKLEDSEAAEQYCAEIG--RPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHN--HGESLDPLQVLETLSPD--MPLQLAS 892 (997)
Q Consensus 819 ~~~l~D~~~Ae~yC~~~~--~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~--~~~~ld~~~VL~~lP~~--~~i~~l~ 892 (997)
. +.+|++.+...|...+ ++++|..+|+++.+...-. +..+.+-++|+. ....|.|..||+.|..+ ..+..++
T Consensus 716 ~-q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~-~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ltls~Ik 793 (933)
T KOG2114|consen 716 Q-QISDPETVITLCERLGKEDPSLWLHALKYFVSEESIE-DCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLTLSVIK 793 (933)
T ss_pred H-HhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchh-hHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceEEehhH
Confidence 7 7899999999999986 5789999999999876322 223344555543 35789999999999866 6788999
Q ss_pred HHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccc
Q 043572 893 DTILRMLRARLHHH--RQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYR 970 (997)
Q Consensus 893 ~fL~~~l~~~~~~~--~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~ 970 (997)
|++.+.++.+.... ++..|...=...++++.+++.++... .|.+.++|..|+-.|.- ++|-|-|||.||++|+.
T Consensus 794 D~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa---~i~q~skCs~C~~~Ldl-P~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 794 DYIIKWLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSA---QIFQVSKCSACEGTLDL-PFVHFLCGHSYHQHCLE 869 (933)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhccc---ceeeeeeecccCCcccc-ceeeeecccHHHHHhhc
Confidence 99999999887653 33346555455667778887664333 46666999999988874 68889999999999999
Q ss_pred ccCcccCCCCCC
Q 043572 971 RQGESTSITGRD 982 (997)
Q Consensus 971 ~~~~~~~~t~~~ 982 (997)
+. +.+||+|..
T Consensus 870 ~~-~~~CP~C~~ 880 (933)
T KOG2114|consen 870 DK-EDKCPKCLP 880 (933)
T ss_pred cC-cccCCccch
Confidence 64 578998875
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=312.38 Aligned_cols=238 Identities=26% Similarity=0.416 Sum_probs=202.6
Q ss_pred EEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEe
Q 043572 36 PISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLT 115 (997)
Q Consensus 36 ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~ 115 (997)
|++.|+++||+||++| |+.|...... ...+. ..+.+|.||.++|+.+.+|+ |+|++|++|
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~-------------~~~~i-----~~~~~I~ql~vl~~~~~llv-Lsd~~l~~~ 61 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPS-------------KPTRI-----LKLSSITQLSVLPELNLLLV-LSDGQLYVY 61 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCc-------------cceeE-----eecceEEEEEEecccCEEEE-EcCCccEEE
Confidence 8889999999999999 8889882211 11222 24556999999999997777 999999999
Q ss_pred ecCcccccc---------------ccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccC
Q 043572 116 DSLLTQPLK---------------KLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKAN 180 (997)
Q Consensus 116 ~l~~l~~~~---------------~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 180 (997)
+|+.+.+.. .+..+|||+.|+...
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~----------------------------------------- 100 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNG----------------------------------------- 100 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeecc-----------------------------------------
Confidence 999988665 467789999999211
Q ss_pred CccchhcccccCCceEEEEEECceEEEEEEeCC--eE-EEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCccee
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SF-VILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~-~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~ 257 (997)
...+..++|||+||+|.+|+|..+ .| +..+|+.+|+.|.+|+|.++.||||++++|.++|+.++...+
T Consensus 101 ---------~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 101 ---------GHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSE 171 (275)
T ss_pred ---------ccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceE
Confidence 002446799999999999999984 78 899999999999999999999999999999999999999999
Q ss_pred eecCCCCC---------CCC-ceEEcCCCCeEEEEeCCeEEEEccCCCccc-cccccCCCCCeEEEeCcEEEEEECCeEE
Q 043572 258 IFTLPDVS---------CPP-MLKLLSKEQKVLLLVDNVGVFVDAHGQPVG-GSLVFRKSPDAVGELSMYVVVLRGGKME 326 (997)
Q Consensus 258 l~~~~~~~---------~~p-~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r-~~i~w~~~P~~i~~~~PYll~~~~~~ie 326 (997)
+++.++.. ..| .+..+++ +|||||++++|+|||.+|+++| ++|.|++.|.++++.+|||+++.++.||
T Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iE 250 (275)
T PF00780_consen 172 LLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIE 250 (275)
T ss_pred EeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCCEEE
Confidence 99776432 333 4555564 5999999999999999999999 5999999999999999999999999999
Q ss_pred EEecCCCceEEEEecCCC
Q 043572 327 LYHKKSGICVQAVTFGGE 344 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~~~ 344 (997)
||++.+|+++|+|++++.
T Consensus 251 V~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 251 VRSLETGELVQTIPLPNI 268 (275)
T ss_pred EEECcCCcEEEEEECCCE
Confidence 999999999999998874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=312.86 Aligned_cols=523 Identities=17% Similarity=0.182 Sum_probs=382.5
Q ss_pred CCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCC--ceecccccCCCcEEEEEcCCeEEEEeecCHHHHH
Q 043572 305 KSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQ--CIATDEECGAGKLLVVATPTKVICYQKVPSEEQI 382 (997)
Q Consensus 305 ~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~--~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~qi 382 (997)
.+|.+++...-+++.+..+.|.+-+..+++.+=.-+++.+..|. .++++..+ +.||+.|.+.|+.+...+....+
T Consensus 288 ~~p~~ivLT~yH~LLl~~d~V~avs~Ln~~vI~~~~~n~s~~g~~LGlv~D~va---~~~w~YTq~~vf~~~vndE~R~v 364 (911)
T KOG2034|consen 288 EPPKAIVLTEFHFLLLYADRVLAVSLLNGEVIYRDQFNESELGGILGLVSDSVA---ETFWLYTQTSVFEYGVNDEARDV 364 (911)
T ss_pred CCcceehHHHHHHHHHhcCceeeeeccCccccchhccCchhcccceeeeecccc---ceEEEEEeceeeeeeeccchHHH
Confidence 56889999888888888999999999888554333444322222 24555322 46899999999999999988877
Q ss_pred H-HHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcc-cccccccCCCCcccc
Q 043572 383 K-DLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPS-EVFPFIMRDPNRWSL 460 (997)
Q Consensus 383 ~-~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~-~l~p~f~~~~~~~~~ 460 (997)
. .+++.|+|+.|++.|+.-+ +.+..+..++|..+|.+++|..|++++.++ ..|. +|--.|+..+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p-------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--~~~FEEVaLKFl~~~~---- 431 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRP-------DALETVLLKQADFLFQDKEYLRAAEIYAET--LSSFEEVALKFLEINQ---- 431 (911)
T ss_pred HHHHHhcchHHHHHHhccCCH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--hhhHHHHHHHHHhcCC----
Confidence 5 4899999999999997643 235678888999999999999999999874 2232 24333332100
Q ss_pred cccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 043572 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540 (997)
Q Consensus 461 ~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~~~~ 540 (997)
+++|. .||.|+-.. + ++..|. ...
T Consensus 432 ---------------------~~~L~-----~~L~KKL~~-------l-t~~dk~-----q~~----------------- 455 (911)
T KOG2034|consen 432 ---------------------ERALR-----TFLDKKLDR-------L-TPEDKT-----QRD----------------- 455 (911)
T ss_pred ---------------------HHHHH-----HHHHHHHhh-------C-ChHHHH-----HHH-----------------
Confidence 00111 112111000 0 000111 112
Q ss_pred HHHHHHHHHHHHHHhc-cCc-------------------hhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCC
Q 043572 541 VKEGVDTLLMYLYRAL-NRV-------------------HDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGM 599 (997)
Q Consensus 541 ~~~~vDT~Ll~~y~~~-~~~-------------------~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~ 599 (997)
.+-|+|+.+|++. |.. .++..++. ..-..+-+.+.+++.++++.+.++.+.--.++
T Consensus 456 ---~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d 532 (911)
T KOG2034|consen 456 ---ALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD 532 (911)
T ss_pred ---HHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2333444444331 100 01112111 12245678899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcc
Q 043572 600 SSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLT 679 (997)
Q Consensus 600 ~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~ 679 (997)
++..+..|.+.... .++++.|.+..+.++.++|++-|+.+.|...+..++
T Consensus 533 ~~~vv~~~~q~e~y------------------------------eeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm 582 (911)
T KOG2034|consen 533 YEFVVSYWIQQENY------------------------------EEALEVLLNQRNPELFYKYAPELITHSPKETVSAWM 582 (911)
T ss_pred HHHHHHHHHHHHHH------------------------------HHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHH
Confidence 99999999876542 135566666678899999999999999999999998
Q ss_pred cccccCCCChhHHHHHhhc-------cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCC
Q 043572 680 SEKRINQLSPDKVIAAIDS-------KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMG 752 (997)
Q Consensus 680 ~~~~~~~l~~~~Vl~~L~~-------~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~ 752 (997)
... +..++..+...|.- .....+++|||+++...+..++.+||.|..+|+.. . .+
T Consensus 583 ~~~--d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~-----~-------~~---- 644 (911)
T KOG2034|consen 583 AQK--DLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKH-----E-------RD---- 644 (911)
T ss_pred Hcc--ccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcC-----C-------cc----
Confidence 753 45566666555431 23568999999999999999999999999888431 0 00
Q ss_pred ccccCCCCCCCcccHHHHHHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHH
Q 043572 753 ETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYC 832 (997)
Q Consensus 753 ~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC 832 (997)
..-++.....|-++...||+..++++|.+..-...+++||.+++.|++|+++.+. .|.+.|+..+
T Consensus 645 -------------~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~--~d~dlak~~A 709 (911)
T KOG2034|consen 645 -------------DLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ--FDIDLAKVIA 709 (911)
T ss_pred -------------chHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh--cCHHHHhhhh
Confidence 0123444445555567999999999999988888999999999999999999994 5699999888
Q ss_pred hhcCC-----chHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 833 AEIGR-----PDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 833 ~~~~~-----~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
....+ +.+|+.+.++++.... .++.++.+|++ .+.+...++|+.+|+...|+.+++.++..+++++++.+
T Consensus 710 ~~~ee~e~lrKkLWLkIAkh~v~~~~----~ikk~i~~Lk~-~~lLkiedlLpffpdf~~id~~keaic~~L~~~n~rie 784 (911)
T KOG2034|consen 710 NDPEEDEDLRKKLWLKIAKHVVKQEN----DIKKAIRFLKE-NELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYNKRIE 784 (911)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHhcc-CcccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 77653 4799999999998753 37789999987 78999999999999999999999999999999987765
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhhccCcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 908 QGQ--IVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 908 ~~~--i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+.+ |..+-..+..++.+++. .+.|+.++.+...|.+|+++|...+|++|||||.||..|+...
T Consensus 785 el~~em~eat~~a~~I~~~~~~--l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 785 ELQEEMIEATELADEIRTEISK--LRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--hhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 543 44444445566677764 4889999999999999999999999999999999999998764
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=243.33 Aligned_cols=232 Identities=19% Similarity=0.276 Sum_probs=172.1
Q ss_pred ecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe--EEEe
Q 043572 39 DCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC--LFLT 115 (997)
Q Consensus 39 ~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~--l~~~ 115 (997)
.++ ++|++||++|..+.+ +.+... ...+. +++++|+||.++++.+.|++ |+|++ |++|
T Consensus 10 ~~~~~~lL~GTe~Gly~~~-~~~~~~------------~~~kl-----~~~~~v~q~~v~~~~~lLi~-Lsgk~~~L~~~ 70 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLN-ISDQPG------------TLEKL-----IGRRSVTQIWVLEENNVLLM-ISGKKPQLYSH 70 (302)
T ss_pred ccCCcEEEEEeCCceEEEE-cccCCC------------CeEEe-----cCcCceEEEEEEhhhCEEEE-EeCCcceEEEE
Confidence 455 589999999955544 443211 11222 48889999999999995555 99997 9999
Q ss_pred ecCcccc----------------ccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 116 DSLLTQP----------------LKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 116 ~l~~l~~----------------~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
+|..|.. .+++..+|||+.|++..
T Consensus 71 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~---------------------------------------- 110 (302)
T smart00036 71 PLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVN---------------------------------------- 110 (302)
T ss_pred EHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEc----------------------------------------
Confidence 9998874 23567888888888542
Q ss_pred CCccchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeE---e-cCCcceEEEEe-----CCEEEEEECC-cEEE
Q 043572 180 NGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEI---Q-CMDGVKTMVWL-----NDSIIVGTVN-GYSL 247 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei---~-~~~~~~~l~~~-----~~~l~vg~~~-~y~l 247 (997)
+.....+|+|++++|.+|+|... +|...+++ . ..+.+....|. ++.||||+.+ +|.+
T Consensus 111 -----------~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~ 179 (302)
T smart00036 111 -----------GKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDV 179 (302)
T ss_pred -----------CCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeE
Confidence 11336789999999999999765 67777763 2 22333333443 5689999997 9999
Q ss_pred EEecC--Ccceee---ecCCCCCCCC-ceEEcCCCCeEEEEeCCeEEEEccCC-Ccccc-ccccCCCCCeEEEeCcEEEE
Q 043572 248 FSCVT--GQSGVI---FTLPDVSCPP-MLKLLSKEQKVLLLVDNVGVFVDAHG-QPVGG-SLVFRKSPDAVGELSMYVVV 319 (997)
Q Consensus 248 idl~~--g~~~~l---~~~~~~~~~p-~i~~~~~~~e~Ll~~~~~g~fv~~~G-~~~r~-~i~w~~~P~~i~~~~PYll~ 319 (997)
+++.+ +...+. |........| .+..+++ +|||||+++.|+|||.+| +.+|. .+.|+..|.+++|.+|||++
T Consensus 180 ~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~-~e~Llc~~~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~pyll~ 258 (302)
T smart00036 180 VQFHESLVSKEDLSLPFLSEETSLKPISVVQVPR-DEFLLCYDEFGVFVNLYGKRRSRNPILHWEFMPESFAYHSPYLLA 258 (302)
T ss_pred EEEeecccccccccccccccccccCceEEEEECC-CeEEEEECcEEEEEeCCCCccccceEEEcCCcccEEEEECCEEEE
Confidence 99964 221111 0011112134 4555664 599999999999999999 67775 79999999999999999999
Q ss_pred EECCeEEEEecCCCceEEEEec
Q 043572 320 LRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 320 ~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.++.||||++.++.++|+|+.
T Consensus 259 ~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 259 FHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred EcCCcEEEEECCCCceEEEEec
Confidence 9999999999999999999986
|
Unpublished observations. |
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=189.35 Aligned_cols=109 Identities=34% Similarity=0.636 Sum_probs=104.4
Q ss_pred HHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcEEEcCCCc
Q 043572 863 VRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESL 942 (997)
Q Consensus 863 ~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l~~~~~~~~~~~~~v~I~~~~~ 942 (997)
++||+++++.|||.+||+.||++|+|+.+++||.++++.+.+++++.++.+++.+++..+.+.+..+.+++++.|++++.
T Consensus 1 l~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~ 80 (109)
T PF10367_consen 1 LELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTK 80 (109)
T ss_pred ChhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred CccccCccCCccEEEcCCCeEEEeccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
|++|+|+|++++|++|||||+||++|.++
T Consensus 81 C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 81 CSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 99999999999999999999999999864
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 []. |
| >COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=222.58 Aligned_cols=268 Identities=15% Similarity=0.226 Sum_probs=183.2
Q ss_pred cccccCCCCCCCccceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcce
Q 043572 16 SQFDLSHYSRSSPIRSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVE 92 (997)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~ 92 (997)
..|.+.+..-....+++++.|+..| |+.||+||..| +|+-....+.+ +|.+.+. +.+..|.
T Consensus 842 ~~ft~~~~~~~Ff~~~nkvn~v~~~dsgr~ll~~T~kg-lYis~~k~~~~---------------~f~kpI~~l~~~nIS 905 (1175)
T COG5422 842 LWFTSFPICDQFFSTTNKVNPVPLYDSGRKLLTGTNKG-LYISNRKDNVN---------------RFNKPIDLLQEPNIS 905 (1175)
T ss_pred hheeeccchhheeeccceecceeeccCCCeEEEeccce-eEEEEeccCcc---------------cccccHHHHhcCCcc
Confidence 4455544333344567899998876 56899999999 44333333221 1222221 3567899
Q ss_pred EEEeecccCcEEEEecCCeEEEeecCccccccc--cc---cccc-eEEEEeecccCCccccccccccccccccccCCccc
Q 043572 93 SIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKK--LG---FLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 93 qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~--~~---~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
||.|+++.+.++. |+|++||-++|+-.+.... .. ..-| +++|. +++|.+-..++.+|+...
T Consensus 906 Qi~vieey~lmll-lsdk~LY~~pl~vid~~~~~~~kksr~~~~hvsffk------~G~C~gk~lv~~~kS~~~------ 972 (1175)
T COG5422 906 QIIVIEEYKLMLL-LSDKKLYSCPLDVIDASTEENVKKSRIVNGHVSFFK------QGFCNGKRLVCAVKSSSL------ 972 (1175)
T ss_pred eeeehhhhhHHHH-hhcCeeecCccchhhhhhhhhhhhhhheeceeEEEe------ecccccceEEEeeeehee------
Confidence 9999999996666 9999999999987654321 11 1222 33333 345555444444443221
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeC-Ce------EEEEEeEecCCcceEEEEeCCEEEE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVN-GS------FVILKEIQCMDGVKTMVWLNDSIIV 239 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~-~~------~~~~kei~~~~~~~~l~~~~~~l~v 239 (997)
...+.|.- -..+|+.+. +. ....+|+.+|..+.++.|+.+.|||
T Consensus 973 ---------------------------~~~l~v~e--~~~~~~~~~s~n~Kk~lt~~~~~el~v~~E~~sv~Flk~KlcI 1023 (1175)
T COG5422 973 ---------------------------SATLAVIE--APLALKKNKSGNLKKALTIELSTELYVPSEPLSVHFLKNKLCI 1023 (1175)
T ss_pred ---------------------------eeeeeeec--chhhhhcccCcchhhhhhhhheEEEEecCceeeeeeeccceEE
Confidence 00111110 011111111 11 1236889999999999999999999
Q ss_pred EECCcEEEEEecCCcceeeecCCCC---------CCCCceEEcCCCCeEEEEeCCeEEEEccCCCcccc--ccccCCCCC
Q 043572 240 GTVNGYSLFSCVTGQSGVIFTLPDV---------SCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVGG--SLVFRKSPD 308 (997)
Q Consensus 240 g~~~~y~lidl~~g~~~~l~~~~~~---------~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~--~i~w~~~P~ 308 (997)
|++++|.|+++++-....|+.+.+. ..+|+. .++-.+|||+|++++|+|||.+|+..|. -+.|++.|+
T Consensus 1024 gC~kgFeIvsle~l~~esLL~paD~s~~~~~~ken~kpia-i~rv~~eFLLCys~faFfVN~~Gwrkrts~i~~Weg~Pq 1102 (1175)
T COG5422 1024 GCKKGFEIVSLENLRTESLLNPADTSPLFFEKKENTKPIA-IFRVSGEFLLCYSEFAFFVNDQGWRKRTSWIFHWEGEPQ 1102 (1175)
T ss_pred eecCCceEeechhhhhHhhcCcccccHHHHhhcccCceEE-EEeeCCcEEEEecceeEEEcCcCceecccEEEEEcCccc
Confidence 9999999999998877778766542 345542 2222349999999999999999999886 589999999
Q ss_pred eEEEeCcEEEEEECCeEEEEecCCCceEEEEecC
Q 043572 309 AVGELSMYVVVLRGGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 309 ~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
.++..+|||+++.++.||||+++||+||+.|--.
T Consensus 1103 ~FalsypYIlaf~~~fIeIr~ieTgeLI~~ilg~ 1136 (1175)
T COG5422 1103 EFALSYPYILAFEPNFIEIRHIETGELIRCILGH 1136 (1175)
T ss_pred eeeeecceEEEecCceEEEEecccceeeeeeccC
Confidence 9999999999999999999999999999998533
|
|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-18 Score=156.39 Aligned_cols=106 Identities=32% Similarity=0.440 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcc
Q 043572 545 VDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAV 624 (997)
Q Consensus 545 vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~ 624 (997)
|||+||+||+.++ ...+.+|+|.+|+|++++++++|+++++|.+|+.||+.+|+|++||++|++++++.. +...|
T Consensus 1 VDTaLlk~Yl~~~-~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~-~~~~~--- 75 (108)
T PF10366_consen 1 VDTALLKCYLETN-PSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEED-SDEED--- 75 (108)
T ss_pred CcHHHHHHHHHhC-HHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccc-ccccc---
Confidence 6999999999995 579999999999999999999999999999999999999999999999999998421 11122
Q ss_pred cccccccccccccchhhhHHHHHHhcCCC--CCHHHHHHHHhhhh
Q 043572 625 ENDLLDGCADVMSGREVAATEASKILEES--SDEDLILQHLGWIA 667 (997)
Q Consensus 625 ~~~l~~~~~~~l~~~~~~~~~~~~~L~~~--~~~~li~~~~~wll 667 (997)
+...|+..++ ++||++. ++.++|++|+.|++
T Consensus 76 ---------~~~~~~~~~i---v~yL~~L~~~~~dLI~~~s~WvL 108 (108)
T PF10366_consen 76 ---------PFLSGVKETI---VQYLQKLGNEDLDLIFEYSDWVL 108 (108)
T ss_pred ---------ccccCchhHH---HHHHHhCChhhhHHHHHhccccC
Confidence 3345555543 5666664 78999999999985
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=144.43 Aligned_cols=132 Identities=24% Similarity=0.295 Sum_probs=119.6
Q ss_pred cCCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCC
Q 043572 684 INQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKN 762 (997)
Q Consensus 684 ~~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 762 (997)
.+.++++.|++.+.. ..+...+.|||+++..+ ..++.+||.|+.+|++
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~------------------------------ 53 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK------------------------------ 53 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH------------------------------
Confidence 367899999998874 35679999999999875 4789999999998843
Q ss_pred CcccHHHHHHHHHHhh-cCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHH
Q 043572 763 SIFQCPVQERLQIFLQ-SSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAY 841 (997)
Q Consensus 763 ~~~~~~~r~kL~~fL~-~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~ 841 (997)
+.+.++++||+ +++.||+++++++|...+++++.++||+|+|+|++|+++++..++|++.|.+||.+..++++|
T Consensus 54 -----~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw 128 (140)
T smart00299 54 -----YDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELW 128 (140)
T ss_pred -----HCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHH
Confidence 45789999999 889999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhcCC
Q 043572 842 MQLLDMYLDS 851 (997)
Q Consensus 842 ~~Ll~~~l~~ 851 (997)
..++++++..
T Consensus 129 ~~~~~~~l~~ 138 (140)
T smart00299 129 AEVLKALLDK 138 (140)
T ss_pred HHHHHHHHcc
Confidence 9999999875
|
|
| >KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=172.43 Aligned_cols=125 Identities=16% Similarity=0.273 Sum_probs=106.0
Q ss_pred EEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCC---------CCCCCc-eEEcCCCCeEEEEeCCe
Q 043572 217 ILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD---------VSCPPM-LKLLSKEQKVLLLVDNV 286 (997)
Q Consensus 217 ~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~---------~~~~p~-i~~~~~~~e~Ll~~~~~ 286 (997)
.++|+..+..+.+++|..+.+|||..++|.++++.....+.+.++.+ ....|+ |-.+. +||++|++..
T Consensus 855 ~~~d~~~~~~~~s~~flk~k~~v~~~k~f~i~sl~~~~~~~l~~~~~~~~~~~~~~~~~kp~~ifri~--~~Fllcy~~~ 932 (1029)
T KOG4305|consen 855 GLTDFFVDSEPVSVSFLKNKLCVGCKKGFEIVSLSNKTAESLLNPADNSPLFFEKRENTKPVAIFRIS--GEFLLCYDEF 932 (1029)
T ss_pred cchhccccccchhHhHhccceeeeecCCCceeccchhhhhccCCCccchHHHHhhhccCceeEEEEec--CeEEEEecce
Confidence 35778888899999999999999999999999998666666655443 234554 33444 3999999999
Q ss_pred EEEEccCCCcccc--ccccCCCCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 287 GVFVDAHGQPVGG--SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 287 g~fv~~~G~~~r~--~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++|||.+|+.+|. -+.|.+.|..++..+|||+++.++.||||+++|++++|.|.-++
T Consensus 933 ~f~vn~~G~~~~~~~~~~w~g~p~~~a~~~~yiia~~~~fIeI~~~~t~eli~~i~~~~ 991 (1029)
T KOG4305|consen 933 AFFVNDQGWRSRTSWIFLWEGEPQEFALSYPYIIAFGDNFIEIRDLETGELIQIILGQN 991 (1029)
T ss_pred EEEEcCCcceecccEEEEEcCccceeeeecceEEEecCceEEEEecccceeeEEeeccc
Confidence 9999999999886 68999999999999999999999999999999999999886554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-14 Score=142.41 Aligned_cols=133 Identities=34% Similarity=0.500 Sum_probs=115.3
Q ss_pred CCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCC
Q 043572 685 NQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNS 763 (997)
Q Consensus 685 ~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (997)
...++..|++.+.+ ..+.....|||.++......++.+||.|+.+|++
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~------------------------------- 54 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIK------------------------------- 54 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHC-------------------------------
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHh-------------------------------
Confidence 45667788887765 3457889999999987777889999999999953
Q ss_pred cccHHHH-HHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHH
Q 043572 764 IFQCPVQ-ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYM 842 (997)
Q Consensus 764 ~~~~~~r-~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~ 842 (997)
..+ ++|++||+++..||+++++++|.+.+++++.++||+|+|+|++|+++ +..++|++.|.+||.+.+++++|.
T Consensus 55 ----~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~~~~l~~ 129 (143)
T PF00637_consen 55 ----YDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVDDPELWE 129 (143)
T ss_dssp ----TTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCSSSHHHH
T ss_pred ----cCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcCcHHHHH
Confidence 233 78999999999999999999999999999999999999999999998 778999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 043572 843 QLLDMYLDSQD 853 (997)
Q Consensus 843 ~Ll~~~l~~~~ 853 (997)
.++++++..+.
T Consensus 130 ~l~~~~l~~~~ 140 (143)
T PF00637_consen 130 QLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCTSTC
T ss_pred HHHHHHHhcCc
Confidence 99999998753
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=135.78 Aligned_cols=303 Identities=16% Similarity=0.224 Sum_probs=219.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...|.+||.+.|++... .-||+.|+.+|+++++..++.+|+.++|..++..+-+.|.+.++|++.-.+|..-.++.
T Consensus 1149 ~edLv~yL~MaRkk~~E----~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a 1224 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVRE----PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA 1224 (1666)
T ss_pred HHHHHHHHHHHHHhhcC----ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH
Confidence 67899999999887442 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhh------ccCchhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIA------DINAVLAV 675 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll------~~~p~~~l 675 (997)
+.-..+..+++... +.+.++.-+.. . .||-...-. +...-.|+
T Consensus 1225 ~La~TLV~LgeyQ~---------------------------AVD~aRKAns~---k-tWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQG---------------------------AVDAARKANST---K-TWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHhhhccch---h-HHHHHHHHHhchhhhhHHHhcCc
Confidence 99888888886421 11233333221 1 233222111 11223366
Q ss_pred hhcccccccCCCChhHHHHHhhccC-hHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCc
Q 043572 676 KVLTSEKRINQLSPDKVIAAIDSKK-VEILQRYLQWLI-EDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGE 753 (997)
Q Consensus 676 ~if~~~~~~~~l~~~~Vl~~L~~~~-~~~~~~YLE~li-~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~ 753 (997)
.|... .+. -+.++.+.+... -+..+..||.-. .++. .-.+.|+|+.+|.
T Consensus 1274 ~iivh---ade--Leeli~~Yq~rGyFeElIsl~Ea~LGLERA--HMgmfTELaiLYs---------------------- 1324 (1666)
T KOG0985|consen 1274 NIIVH---ADE--LEELIEYYQDRGYFEELISLLEAGLGLERA--HMGMFTELAILYS---------------------- 1324 (1666)
T ss_pred eEEEe---hHh--HHHHHHHHHhcCcHHHHHHHHHhhhchhHH--HHHHHHHHHHHHH----------------------
Confidence 66653 111 245555544321 123344444321 1111 2456788888882
Q ss_pred cccCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHh-cCCHHH--HH
Q 043572 754 TRSSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALK-LEDSEA--AE 829 (997)
Q Consensus 754 ~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~-l~D~~~--Ae 829 (997)
++-++|+++.|+- ++..++.++++-|++..+|.|.++||.+-..++.|.-.++.+ -.+++. -.
T Consensus 1325 -------------kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FK 1391 (1666)
T KOG0985|consen 1325 -------------KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFK 1391 (1666)
T ss_pred -------------hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHH
Confidence 3668889999987 788999999999999999999999999999999988887743 223322 22
Q ss_pred HHHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 830 QYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 830 ~yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
+...++.+-++|...+++|+... |.+ +.++|.--..++|...++..+.+.-.++.+++||..+...++...+
T Consensus 1392 dii~kVaNvElyYkAi~FYl~~~----P~l--lnDlL~vL~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~Nn~avN 1463 (1666)
T KOG0985|consen 1392 DIITKVANVELYYKAIQFYLDFH----PLL--LNDLLTVLSPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAVN 1463 (1666)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----hHH--HHHHHHhcccccCchHHHHHHHhcCCCcccHHHHHHHHhcchHHHH
Confidence 33444556689999999999863 544 7788887789999999999999999999999999988776654433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-05 Score=90.84 Aligned_cols=273 Identities=17% Similarity=0.238 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDP 622 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~ 622 (997)
..+..+|.|.|+..|. .=..|++.+++-|...+-+.++++.- .|+.+...+|+-+.-| +...+.+
T Consensus 872 ~a~hnAlaKIyIDSNN--nPE~fLkeN~yYDs~vVGkYCEKRDP--~lA~vaYerGqcD~el---I~vcNeN-------- 936 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNN--NPERFLKENPYYDSKVVGKYCEKRDP--HLACVAYERGQCDLEL---INVCNEN-------- 936 (1666)
T ss_pred hHHHhhhhheeecCCC--ChHHhcccCCcchhhHHhhhhcccCC--ceEEEeecccCCcHHH---HHhcCch--------
Confidence 4566789999998774 33578888888899999888877543 3455555566654432 1111110
Q ss_pred cccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchh------hhhhcccccccCCCChhHH----
Q 043572 623 AVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVL------AVKVLTSEKRINQLSPDKV---- 692 (997)
Q Consensus 623 ~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~------~l~if~~~~~~~~l~~~~V---- 692 (997)
..-..-++||-+..|.+|+-+ .|.+.+|-. .++.-. .++-||+.|
T Consensus 937 ------------------SlfK~~aRYlv~R~D~~LW~~---VL~e~n~~rRqLiDqVv~tal----~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 937 ------------------SLFKSQARYLVERSDPDLWAK---VLNEENPYRRQLIDQVVQTAL----PETQDPEEVSVTV 991 (1666)
T ss_pred ------------------hHHHHHHHHHHhccChHHHHH---HHhccChHHHHHHHHHHHhcC----CccCChHHHHHHH
Confidence 001123466655566665222 233444422 111111 234455444
Q ss_pred HHHhhccChHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHH
Q 043572 693 IAAIDSKKVEILQRYLQWLIEDQDS--DDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQ 770 (997)
Q Consensus 693 l~~L~~~~~~~~~~YLE~li~~~~~--~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 770 (997)
-.|+...-|...+..||.+|.+... ....+.|.|+. .++ +..|
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL-------tAi----------------------------kad~ 1036 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL-------TAI----------------------------KADR 1036 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH-------HHh----------------------------hcCh
Confidence 2355544467889999999975432 23455565532 222 3678
Q ss_pred HHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcC
Q 043572 771 ERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLD 850 (997)
Q Consensus 771 ~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~ 850 (997)
.+.++|+..=.+||...+-.++-..+|++|..-+|.|-..+..|+..++...+..+.|-+|+.+...+.+|.+|.+.=|.
T Consensus 1037 trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1037 TRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CCCCCchhHHHHH-HHHHhccCCCCHHHHhhhCCCCcchhhhHHHHH
Q 043572 851 SQDGKEPMFKAAV-RLLHNHGESLDPLQVLETLSPDMPLQLASDTIL 896 (997)
Q Consensus 851 ~~~~~~~~~~~~~-~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~ 896 (997)
.. .+..|+ .++. ..+.-+-.+|++.-...-.-.++-.||.
T Consensus 1117 ~~-----~v~dAieSyik-adDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1117 GG-----LVKDAIESYIK-ADDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred cC-----chHHHHHHHHh-cCCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 53 222222 3332 2222233556666555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.1e-05 Score=89.98 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=105.2
Q ss_pred HHHHHHHhhhhcc-CchhhhhhcccccccCCCChhHHHH-HhhccChHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHHH
Q 043572 657 DLILQHLGWIADI-NAVLAVKVLTSEKRINQLSPDKVIA-AIDSKKVEILQRYLQWLIEDQDSDDTQFHTLY-ALSLAKS 733 (997)
Q Consensus 657 ~li~~~~~wll~~-~p~~~l~if~~~~~~~~l~~~~Vl~-~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L-~~lyi~~ 733 (997)
++..+|+..|..+ |-+.|+.--+.- ...++|..|+. ||+.....-+..|||.|+... -...-|+.| +..|++
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~t--I~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiK- 443 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIET--IGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIK- 443 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH--cccCChHHHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHH-
Confidence 4456666666643 555665554431 34567777765 666666667889999998742 234445554 334543
Q ss_pred HHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCC----CCChHHHHhhccCCCchHHHHHHHHhhc
Q 043572 734 AIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSD----LYDPEDVLDLIEGSELWLEKAILYRKLG 809 (997)
Q Consensus 734 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~----~yd~~~~L~~~~~~~l~~e~~~Ll~klg 809 (997)
+ ..-.||.+|++... .+|.+.++++|.+.++..+.-+|-.|-+
T Consensus 444 ----l-----------------------------kd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 444 ----L-----------------------------KDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred ----h-----------------------------cchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 1 23568889998866 8899999999999999888888888999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhcCCc
Q 043572 810 QETLVLQILALKLEDSEAAEQYCAEIGRP 838 (997)
Q Consensus 810 ~h~eAL~il~~~l~D~~~Ae~yC~~~~~~ 838 (997)
.|+.+|+++++.++++++|..|-....-+
T Consensus 491 ~he~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 491 KHEWVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cCHHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 99999999999999999999999876533
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0034 Score=67.39 Aligned_cols=236 Identities=16% Similarity=0.175 Sum_probs=136.7
Q ss_pred eeeeeEEeecC--CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDCQ--VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~~--~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++... +.|+.|+.+|.+..|....... ..... ....+|..+...|..+.++++-.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------LRTLK---GHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--------------EEEEe---cCCcceeEEEECCCCCEEEEEcC
Confidence 35688887654 6899999999999998875431 00011 14557889999998876666444
Q ss_pred CCeEEEeecCcccccccccccc-ceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLK-GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~k-g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++..-++........ .+..++..+
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------------------ 103 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSP------------------------------------------------ 103 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcC------------------------------------------------
Confidence 8999999987643322221111 233333211
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~~~ 262 (997)
+ ...++++. ...+.+|.....+ ....+. ..+.+.++.|.. ..++.|. .....++|+.++.....+...
T Consensus 104 ----~-~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 104 ----D-GRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred ----C-CCEEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 0 12344444 5678888776432 222332 344678999886 3466666 678889999877655555422
Q ss_pred CCCCCCceEEcCCCCeEEEEe-CCeEEEEccC-CCcccccc-ccCCCCCeEEEeC--cEEEEEE-CCeEEEEecCCCceE
Q 043572 263 DVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSL-VFRKSPDAVGELS--MYVVVLR-GGKMELYHKKSGICV 336 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i-~w~~~P~~i~~~~--PYll~~~-~~~ieI~~~~~~~lv 336 (997)
... -..+...++++.++++. ++...++|.. |.+.. .+ .....+..+.+.. .++++.. ++.|.|+++.++..+
T Consensus 177 ~~~-i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 177 TGE-VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred ccc-cceEEECCCcCEEEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 111 11122223333555554 4555556654 33332 22 2233445555554 3444445 789999999988888
Q ss_pred EEEe
Q 043572 337 QAVT 340 (997)
Q Consensus 337 Q~i~ 340 (997)
+.+.
T Consensus 255 ~~~~ 258 (289)
T cd00200 255 QTLS 258 (289)
T ss_pred EEcc
Confidence 8876
|
|
| >PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=71.10 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred CCCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCC--ceecccccCCCcEEEEEcCCeEEEEeecCHHHHHH
Q 043572 306 SPDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQ--CIATDEECGAGKLLVVATPTKVICYQKVPSEEQIK 383 (997)
Q Consensus 306 ~P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~--~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~qi~ 383 (997)
.|.+++....|++.+.++.|.|.+..+++.|..-.+... .|+ .++.+.. .+.+|+.|++.||.+.....+..+.
T Consensus 35 ~p~si~lT~~H~llL~~~~l~~vn~L~~~vV~e~~~~~~-~~~~~gl~~D~~---~~t~W~ys~~~I~ei~i~~E~r~vW 110 (147)
T PF05131_consen 35 PPLSIALTEFHLLLLYSDRLIAVNRLNNKVVFEESLLET-GGKILGLCRDPS---SNTFWLYSSNSIFEIVINNEDRDVW 110 (147)
T ss_pred CcceEEeeceeeeEEeCCEEEEEEecCCcEEEEEEeccC-CcceeeEEEcCC---CCeEEEEeCCeeEEEEcCcchHHHH
Confidence 499999999999999999999999999999866655321 122 3555532 2579999999999999999999876
Q ss_pred H-HHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 043572 384 D-LLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLF 425 (997)
Q Consensus 384 ~-Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~ 425 (997)
+ ++++|+|++|+++|+..+ .....|...+|.++|.
T Consensus 111 k~yl~~~~fd~Al~~~~~~~-------~~~d~V~~~qa~~lf~ 146 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKTNP-------AQRDQVLIKQADHLFQ 146 (147)
T ss_pred HHHHhcCcHHHHHHHccCCH-------HHHHHHHHHHHHHHhh
Confidence 5 889999999999997742 1245788888998875
|
The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain. |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-06 Score=99.42 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=159.3
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.++|.|++.||.|+.+||..|.-+ +..... +++++. +.++..+|+.+++..+ .|+..+|.
T Consensus 640 ~se~~~aa~~g~n~~~~t~~gl~l-ld~s~q----~k~~~~--------------i~~rrfqq~~~le~~n-~l~tis~~ 699 (953)
T KOG0587|consen 640 NSEILCAALWGVNLLVGTESGLML-LDRSGQ----GKVYPL--------------INRRRFQQMDVLEGLN-VLVTISGK 699 (953)
T ss_pred hhhHHHHHhcCcceeeccccccee-eccccC----cccCCc--------------ccchhcccccccCCcc-eeEEEecc
Confidence 358999999999999999999543 333322 222211 3678899999999999 66658886
Q ss_pred --eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc---CCccch
Q 043572 111 --CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA---NGVKVK 185 (997)
Q Consensus 111 --~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~g~~~~ 185 (997)
.+.+|.++++--. ..+.+++ .++-.+|+++ .|+-.+
T Consensus 700 ~~~~~~~y~s~~~~k---------------~l~~d~e------------------------~ek~~~~~~~~~~~~~~~~ 740 (953)
T KOG0587|consen 700 KDKLRVYYLSWLRNK---------------ILHNDPE------------------------VEKKQGWTTVGDLEGCIHY 740 (953)
T ss_pred ccccceecchHHhhh---------------hhhcCch------------------------hhhhccchhhhhhhcchhh
Confidence 8888888875310 0011100 1111223333 222221
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCC---eEEEEEeEe-cCCcc--eEEEEe-CCE--EEEEECCcEEEEEecCCcce
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNG---SFVILKEIQ-CMDGV--KTMVWL-NDS--IIVGTVNGYSLFSCVTGQSG 256 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~---~~~~~kei~-~~~~~--~~l~~~-~~~--l~vg~~~~y~lidl~~g~~~ 256 (997)
+. +.+...-+++++.+..+.+|-|... .|+.++.+. +...+ ..+... +++ +..|...+|.-+|.+.|...
T Consensus 741 ~~-~k~~~ik~l~is~~~s~evy~~apk~~~k~~~~~s~~~~~~~~~~~d~~~ee~~~~~v~~gs~~~~~~~~~~~~~~~ 819 (953)
T KOG0587|consen 741 KV-VKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVY 819 (953)
T ss_pred hH-HHHHHHHHhheeccccceeeecCCchHHHHHhhhhhhhhcccchhccchhhcCceEEEEecCcccccccccCCCCCC
Confidence 11 1122335789999999999999876 344434322 22222 222222 444 66677889999999999888
Q ss_pred eeecCCCC--CCCC-ceEEcC--CCCeEEEEeCCeEEEEccCCCcccc-ccccCCCCCeEEEe-CcEEEEEECCeEEEEe
Q 043572 257 VIFTLPDV--SCPP-MLKLLS--KEQKVLLLVDNVGVFVDAHGQPVGG-SLVFRKSPDAVGEL-SMYVVVLRGGKMELYH 329 (997)
Q Consensus 257 ~l~~~~~~--~~~p-~i~~~~--~~~e~Ll~~~~~g~fv~~~G~~~r~-~i~w~~~P~~i~~~-~PYll~~~~~~ieI~~ 329 (997)
++.+.... ...| ++..++ ...+.|+|+++.++.++.-|+.... ..+|-..|.++++. +--+++..++.++|++
T Consensus 820 ~v~~~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~k~v~~~~~~~~Ss~a~~~~~n~~g~~~ka~e~~s 899 (953)
T KOG0587|consen 820 DIYLPTHIQCSITPHAIIILPNTDGMELLLCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQIMGWGEKAIEIRS 899 (953)
T ss_pred CCcCCcchhhcccceeEecCCCcchHHHhhhhhcccccccCccchHHHHHHhcCCCCCcceeeecccccccCcccceeec
Confidence 87766532 2334 333443 3467899999999999999987765 67999999998765 5577788899999999
Q ss_pred cCCCce
Q 043572 330 KKSGIC 335 (997)
Q Consensus 330 ~~~~~l 335 (997)
++++.+
T Consensus 900 ~e~~~~ 905 (953)
T KOG0587|consen 900 VETGHL 905 (953)
T ss_pred cccccc
Confidence 987543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00091 Score=80.80 Aligned_cols=90 Identities=9% Similarity=0.122 Sum_probs=57.1
Q ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHhhccCcEEEcCCCcCccccCcc--CCccEEEcCCC
Q 043572 886 MPLQLASDTILRMLRARLHHHRQGQIVHNLSRAVDI--DARLARLEERSRHVQINDESLCDSCHARL--GTKLFAMYPDD 961 (997)
Q Consensus 886 ~~i~~l~~fL~~~l~~~~~~~~~~~i~k~l~~~e~l--~~~~~~~~~~~~~v~I~~~~~C~vC~k~l--~~~~f~v~p~g 961 (997)
++++++++-|..++..+.++..-.+....+.+.+++ ..+++ .+...|.-.| -...|..|++++ +.++...-.||
T Consensus 1079 ~tf~D~kqlLl~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r-~~~shr~~~i-ht~~c~~c~q~~~~h~~~~~Fl~wg 1156 (1206)
T KOG2079|consen 1079 MTFQDLKQLLLNVFNSYKLERELSELSQKIIEDSSLDLVQQYR-KFLSHRGWSI-HTDDCEICGQKIWAHLDPLLFLAWG 1156 (1206)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHhhccCcee-cCcchHhhhhhhhccCcchheeecc
Confidence 689999999999999988765433332223322222 22222 1112244334 347899999999 44444334499
Q ss_pred eEEEeccccccCcccCC
Q 043572 962 TIVCYKCYRRQGESTSI 978 (997)
Q Consensus 962 ~~~H~~C~~~~~~~~~~ 978 (997)
|+-|+.|..... ..||
T Consensus 1157 h~qh~qc~~~~d-~~c~ 1172 (1206)
T KOG2079|consen 1157 HVQHHQCMISVD-LKCP 1172 (1206)
T ss_pred chhhHHHHHHHh-hcCC
Confidence 999999999875 4577
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.018 Score=67.36 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=158.4
Q ss_pred CccceeeeeEEeec--CCeEEEEcCC-ceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 27 SPIRSLSISPISDC--QVLIYIGTQS-GSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 27 ~~~~~~~I~ci~~~--~~~l~iGT~~-G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
.++++.+|..+... |++|.+|+.. |.|+.|+....+ |. ..|+. +-..|..+.+-|+.+.+
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YV--------lKQQg--------H~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YV--------LKQQG--------HSDRITSLAYSPDGQLI 365 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-ee--------eeccc--------cccceeeEEECCCCcEE
Confidence 45677899888876 9999999876 999999997643 11 11221 22369999999999955
Q ss_pred EEEecCCeEEEeecCc-cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLL-TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~-l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
.-.-.||+|.+|+..+ |=-++=..-+.||+.+....
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~------------------------------------------- 402 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA------------------------------------------- 402 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------------------------------------------
Confidence 5544478999998754 10000011223333333211
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc--eEEEEe--CCEEEEEECCcEEE--EEecCCcce
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV--KTMVWL--NDSIIVGTVNGYSL--FSCVTGQSG 256 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~--~~l~~~--~~~l~vg~~~~y~l--idl~~g~~~ 256 (997)
.+...++....-.+..+.... .+-.|.+..|.++ .+++.. |+.+|.|....|.| .+++||+..
T Consensus 403 ---------~g~~llssSLDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 403 ---------RGNVLLSSSLDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred ---------cCCEEEEeecCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 123345555556666655543 5566778788877 455555 77899998886655 688888776
Q ss_pred eeecCCCCCCCCce-EEcCCCCeEEEE--eCCeEEEEccCCCccc-cccccCCCCCeEEEe--CcEEEEE-ECCeEEEEe
Q 043572 257 VIFTLPDVSCPPML-KLLSKEQKVLLL--VDNVGVFVDAHGQPVG-GSLVFRKSPDAVGEL--SMYVVVL-RGGKMELYH 329 (997)
Q Consensus 257 ~l~~~~~~~~~p~i-~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r-~~i~w~~~P~~i~~~--~PYll~~-~~~~ieI~~ 329 (997)
+++.=-. .|+. ..++..+..|.. .|.+.-.-|--+.... .++.-.+....+.+. .-=|.+. .++.|.+++
T Consensus 472 DiLsGHE---gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 472 DILSGHE---GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ehhcCCC---CcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 6654211 1221 123323344433 3444433332222111 255555555566655 2244444 466888888
Q ss_pred cCCCceEEEEecCCCCC----------------CCcee-cccccCCCcEEEEEcCCeEEEEeecCHHH
Q 043572 330 KKSGICVQAVTFGGEGG----------------GQCIA-TDEECGAGKLLVVATPTKVICYQKVPSEE 380 (997)
Q Consensus 330 ~~~~~lvQ~i~~~~~~~----------------~~~i~-~~~~~~~g~~~~v~s~~~V~~l~~~~~~~ 380 (997)
+..+..+-+|.-..... +++.. ..|+. +|+.++.+..+.-.||+-+|-..
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence 87765554454322111 12111 12222 45666677778888888888764
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=82.71 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=98.3
Q ss_pred CceEEEEEECceEEEEEEeCC--eEEEEEeEecCCc----ceEEEEe----CCEEEEEECCc---------EEEEEecCC
Q 043572 193 GDNVFAVIIGKRLVLIELVNG--SFVILKEIQCMDG----VKTMVWL----NDSIIVGTVNG---------YSLFSCVTG 253 (997)
Q Consensus 193 ~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~~~~----~~~l~~~----~~~l~vg~~~~---------y~lidl~~g 253 (997)
+...+|-|....+.+.+|-.- .|..+|.|..|-+ +-.+... ...+|+|...+ |...++...
T Consensus 617 g~~~lc~alp~sivl~qwy~Pm~kf~l~k~i~~pl~~p~~~f~~l~~~~~e~p~vc~Gv~~~~~~~~~~v~f~~~~~~~~ 696 (829)
T KOG0576|consen 617 GGKFLCGALPTSIVLLQWYEPMNKFMLVKSISFPLPSPLSVFEMLVLPESEYPQVCVGVSAGGGTLNNEVLFHTAFLNSD 696 (829)
T ss_pred CCceeecccCceeEEeeecChHHhhhHHHhcccCCCCccchhhhccccCcccceeeeeccCCCCCCCceeEEEecccccc
Confidence 456799999999999999753 6777776554321 1222222 23499996532 222222221
Q ss_pred cceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccCCC--cccc---ccccCCCCCeEEEeCcEEEEEECCeEEEE
Q 043572 254 QSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQ--PVGG---SLVFRKSPDAVGELSMYVVVLRGGKMELY 328 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~--~~r~---~i~w~~~P~~i~~~~PYll~~~~~~ieI~ 328 (997)
..-.+..-+.....|.+..+.. +-+++|++++...++.+|+ ..+. .+.++..|.++++..--+++|.+.+++.+
T Consensus 697 ~~w~~~~~~~~~~v~~v~qvdr-d~I~v~~~n~V~~v~lqG~~~~~~~~~sel~f~f~iesv~~~~gsvlaf~~hgvqgr 775 (829)
T KOG0576|consen 697 SSWDIEAAGETLPVPQVTQVDR-DTILVLFENMVKIVNLQGNGKVAVKLLSELTFDFDIESVVCLQGSVLAFWKHGVQGR 775 (829)
T ss_pred cccceeccCcccCCceeEEecc-cceEeeecCeeEEEeccCCccccccccccccccCCcceEEeeCCceecccCCcceee
Confidence 1111222111112334555553 4899999999999999997 3332 68899999999999999999999999999
Q ss_pred ecCCCceEEEEe
Q 043572 329 HKKSGICVQAVT 340 (997)
Q Consensus 329 ~~~~~~lvQ~i~ 340 (997)
++.+.++.|.|.
T Consensus 776 ~l~S~~vtqei~ 787 (829)
T KOG0576|consen 776 SLTSNEVTQEIQ 787 (829)
T ss_pred eccchHHHHHHH
Confidence 999988877764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=59.87 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred eeeEEeecCCe--EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-C
Q 043572 33 SISPISDCQVL--IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-D 109 (997)
Q Consensus 33 ~I~ci~~~~~~--l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d 109 (997)
-|.||+.+... ++-+++|-.+-++..+..=. ...-|-+ +..-|-||..=|.-..-.++-| |
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa------------~~qtfeG----H~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA------------CEQTFEG----HEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCcee------------eeeEEcC----cceEEEEEEecCCCccceeeeecc
Confidence 58888888764 44455555555666664322 1112222 4557889998888654555333 9
Q ss_pred CeEEEeecCcccccccc-ccccceEEEEeec
Q 043572 110 QCLFLTDSLLTQPLKKL-GFLKGISVIAKRI 139 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~ 139 (997)
++|.+|++-+-.|..++ +-.|||+++..-+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT 193 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence 99999999775554443 4578888887643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.07 Score=56.74 Aligned_cols=227 Identities=14% Similarity=0.157 Sum_probs=139.1
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC--cEEEE
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG--KVLLL 106 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~--~lLv~ 106 (997)
.....|+|+++.+..+.=|++|-++..|.......- ..++. ....|+-+..-+... .||-+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql-------------g~ll~----HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL-------------GILLS----HAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhh-------------cceec----cccceEEEEecCCcchhheeee
Confidence 345799999999999999999999999999865421 11111 233466666665553 58887
Q ss_pred ecCCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.||.+.+|+-...+.+..+..-+| |+.++++|.
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS--------------------------------------------- 138 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS--------------------------------------------- 138 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecccccccceeEecCC---------------------------------------------
Confidence 7789999999877665554433333 777777651
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECCcEEEEEecCCcceeeecCCC
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~~y~lidl~~g~~~~l~~~~~ 263 (997)
+..-|.|.....+.++.+-.++-.... .+...+..+.|. |+..+|+.++...++-+++.. +|....
T Consensus 139 -------~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~ 206 (362)
T KOG0294|consen 139 -------GKLALSVGGDQVLRTWNLVRGRVAFVL--NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIE 206 (362)
T ss_pred -------CceEEEEcCCceeeeehhhcCccceee--ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhh
Confidence 223466677777888777655222211 234455667887 566888888888888765432 332222
Q ss_pred CCCCCceEEcCCCCeEEEEeCCe-EEEEccC-CCccccccccCCCC---CeEE-EeCc---EEEEEE-CCeEEEEecCC
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDNV-GVFVDAH-GQPVGGSLVFRKSP---DAVG-ELSM---YVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~~-g~fv~~~-G~~~r~~i~w~~~P---~~i~-~~~P---Yll~~~-~~~ieI~~~~~ 332 (997)
.+-++.++.+...++++++-|+- .-+.|.+ +.+. ..+...+ ..++ |..| ||+..+ ++.|-|-.+..
T Consensus 207 ~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~---~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 207 NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL---TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ccccceeeeecCCceEEEecCCceEEEeccCCCccc---eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 23456677776666777876653 3334443 2221 2333333 2334 4432 666554 57888887764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0065 Score=71.66 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=83.9
Q ss_pred HHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCccccc
Q 043572 548 LLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVEND 627 (997)
Q Consensus 548 ~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~ 627 (997)
.++.+|+++++ ..|.+||+..++++++.+.+++.+.+.|+++++|..+-|++.+||.+...--. |
T Consensus 612 k~I~LYAEyDr-k~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~--------d------ 676 (846)
T KOG2066|consen 612 KQIELYAEYDR-KKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELR--------D------ 676 (846)
T ss_pred HHHHHHHHHhH-hhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhh--------C------
Confidence 36677999987 69999999999999999999999999999999999999999999998875221 1
Q ss_pred ccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhh--cccccccCCCChhHHHHHhhc
Q 043572 628 LLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKV--LTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 628 l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~i--f~~~~~~~~l~~~~Vl~~L~~ 698 (997)
+..+++|.++..|-+|+..-....++ -|+-.-.+ ++ ..++|-.|+..+..
T Consensus 677 ---------------ie~AIefvKeq~D~eLWe~LI~~~ld-kPe~~~~ll~i~-----~~~dpl~ii~kip~ 728 (846)
T KOG2066|consen 677 ---------------IEKAIEFVKEQDDSELWEDLINYSLD-KPEFIKALLNIG-----EHEDPLLIIRKIPD 728 (846)
T ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHhhc-CcHHHHHHHHhh-----hcccHHHHHhcCCC
Confidence 22456777777787763333333333 34433333 22 24777778777743
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=61.56 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCCh
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMS 600 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~ 600 (997)
...+..||+..-+... ....+.|.|+.+|++.++ ..+.+|++ ..+..|++.+...+.+++.+++.+.+|.+.|+|
T Consensus 23 ~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~~-~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~ 98 (140)
T smart00299 23 LEELIPYLESALKLNS---ENPALQTKLIELYAKYDP-QKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF 98 (140)
T ss_pred HHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHCH-HHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH
Confidence 4567777776533321 235788999999999876 46677777 778999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 043572 601 SKALAIWRV 609 (997)
Q Consensus 601 ~~AL~il~~ 609 (997)
.+|++++.+
T Consensus 99 ~~Al~~~l~ 107 (140)
T smart00299 99 KDAIVTLIE 107 (140)
T ss_pred HHHHHHHHH
Confidence 999999886
|
|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00044 Score=80.12 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=80.4
Q ss_pred eCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEec--CCc---ceeeecCCCCCCCCceEEcCCCCeEEEEeCC
Q 043572 211 VNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCV--TGQ---SGVIFTLPDVSCPPMLKLLSKEQKVLLLVDN 285 (997)
Q Consensus 211 ~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~--~g~---~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~ 285 (997)
+.+.|...-.+..| .|.+........+|-.-+.|+++.++ +.. ...+++++.+..+-....++. ++++++|.+
T Consensus 1069 trd~fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ldhqsss~vsARklm~p~~~~yp~sA~si~a-nelllaYQn 1146 (1265)
T KOG0976|consen 1069 TRDRFSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELDHQSSSGVSARKLMDPPNPRYPGSAISIGA-NELLLAYQN 1146 (1265)
T ss_pred cchhhhhcccccCC-CchhhhhcCcceEEEecceEEEEeecccCCCCCchhhhcCCCCCCCCcchhhccH-HHHHHHhhc
Confidence 34456655556566 44455455555333333445555554 221 234555554333222333343 489999999
Q ss_pred eEEEEccCCCcccc-ccccCCCCCeEEEeCcEEEEEECCeEEEEecCC
Q 043572 286 VGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 286 ~g~fv~~~G~~~r~-~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~ 332 (997)
-|+|||..|.-.|. ++.|+..|..++|..|.+..+.++.++|+-+..
T Consensus 1147 kGifVnl~Geqsrn~siewekmp~ef~YtspilyiVhddsiei~~is~ 1194 (1265)
T KOG0976|consen 1147 KGIFVNLSGEQSRNTSIEWEKMPGEFTYTSPILYIVHDDSIEIHPISP 1194 (1265)
T ss_pred cCeEEecccccCCccccccccCCCCccccCceEEEeccCCccccccCC
Confidence 99999999998887 799999999999999999999999999987653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00022 Score=69.85 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHH
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLA 611 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~ 611 (997)
..+.|.|+.+|++.++.+.+.+|++..+..|++.+.+.+.+++.+++.+.+|.+.|+|++|++++..+.
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~ 110 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLK 110 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHc
Confidence 688999999999998767999999988889999999999999999999999999999999999744433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.027 Score=59.73 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=104.8
Q ss_pred cccccCCCCCC--CccceeeeeEEeecCC----eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 16 SQFDLSHYSRS--SPIRSLSISPISDCQV----LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~I~ci~~~~~----~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
-+||...-... .......|+|.-.|.. +|+=|.+||.+.++....=. ..+.++. ++.
T Consensus 66 ~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~~~slK~---H~~ 128 (362)
T KOG0294|consen 66 HIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------LLKSLKA---HKG 128 (362)
T ss_pred EEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------Eeeeecc---ccc
Confidence 46776432111 2223468999888765 69999999999998887532 1222222 666
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
+|+-|.+=|....+|-+--|+.++.|+|-... ..|+.+..+. +.-+. .+
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-----------~a~v~~L~~~-at~v~-------------w~------ 177 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-----------VAFVLNLKNK-ATLVS-------------WS------ 177 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCc-----------cceeeccCCc-ceeeE-------------Ec------
Confidence 79999999998866664457799999985532 2233221110 00000 00
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC-EEEEEECCc-EEE
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND-SIIVGTVNG-YSL 247 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-~l~vg~~~~-y~l 247 (997)
....+++|..+++|-+|+.... ..++++..|..+.++.|... .+.||..++ ...
T Consensus 178 ----------------------~~Gd~F~v~~~~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 178 ----------------------PQGDHFVVSGRNKIDIYQLDNA--SVFREIENPKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred ----------------------CCCCEEEEEeccEEEEEecccH--hHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence 0124578899999999998763 45567777777888888864 588886664 445
Q ss_pred EEecC
Q 043572 248 FSCVT 252 (997)
Q Consensus 248 idl~~ 252 (997)
.|.++
T Consensus 234 ~D~ds 238 (362)
T KOG0294|consen 234 KDTDS 238 (362)
T ss_pred eccCC
Confidence 56543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.017 Score=69.15 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=112.2
Q ss_pred CCCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCC----------------------------C
Q 043572 23 YSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTP----------------------------S 74 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~----------------------------~ 74 (997)
.+++.-+....|.|++.+.+.+..||+++.+..|.+++........++..+ .
T Consensus 48 ~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 48 EPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred CCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 444444467799999999999999999999999999876644222111110 0
Q ss_pred ccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccc
Q 043572 75 QQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNS 154 (997)
Q Consensus 75 ~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~ 154 (997)
....+.++ -.+.||.++..-|+.+.|.|+-|||+|++|++.+......++.+..++.|-..
T Consensus 128 ~s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s---------------- 188 (933)
T KOG1274|consen 128 SSQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILS---------------- 188 (933)
T ss_pred cchheeec---ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccc----------------
Confidence 00111222 15679999999999998888888999999999876544444433332222200
Q ss_pred cccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeEecCCcceEEEE
Q 043572 155 VSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEIQCMDGVKTMVW 232 (997)
Q Consensus 155 ~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~~~~~~~l~~ 232 (997)
.++...+|+-+++ ..+++.+++.|.+|...+- .|+. +.-........++|
T Consensus 189 --------------------------~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 189 --------------------------RICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQW 240 (933)
T ss_pred --------------------------ceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheee-cccccccceEEEEE
Confidence 0011122222222 4567788999999987654 2332 22112233567777
Q ss_pred e--CCEEEEE-ECCcEEEEEecC
Q 043572 233 L--NDSIIVG-TVNGYSLFSCVT 252 (997)
Q Consensus 233 ~--~~~l~vg-~~~~y~lidl~~ 252 (997)
. |..|.-+ .+++..+.|.++
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 7 4456666 445788888774
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.5 Score=50.27 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=109.9
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTST 165 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 165 (997)
++.+|..+...|+.+.++++-.||.+.+|++..-.+...... ...+..+...+
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------- 61 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-------------------------- 61 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--------------------------
Confidence 567899999999988666644489999999875432211110 01111111110
Q ss_pred cchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC--EEEEEE
Q 043572 166 GQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND--SIIVGT 241 (997)
Q Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~--~l~vg~ 241 (997)
++ ..++++. ...+.+|.+..+ ...+++.. ...+.++.|..+ .++.+.
T Consensus 62 --------------------------~~-~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 112 (289)
T cd00200 62 --------------------------DG-TYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSS 112 (289)
T ss_pred --------------------------CC-CEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEec
Confidence 11 1244443 667888888764 22233333 236788999863 455565
Q ss_pred -CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccC-CCccccccccC-CCCCeEEEeCc-
Q 043572 242 -VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSM- 315 (997)
Q Consensus 242 -~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~P- 315 (997)
.....++|+.++.....+... ........+..++.++++. ++...++|.. |.+.. .+.-. .....+.+...
T Consensus 113 ~~~~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 113 RDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA-TLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred CCCeEEEEECCCcEEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce-eEecCccccceEEECCCc
Confidence 678889999866554444421 1112222333334666654 5566666654 44332 22222 23455555544
Q ss_pred -EEEEEE-CCeEEEEecCCCceEEEE
Q 043572 316 -YVVVLR-GGKMELYHKKSGICVQAV 339 (997)
Q Consensus 316 -Yll~~~-~~~ieI~~~~~~~lvQ~i 339 (997)
++++.. ++.|.|+++.++..++.+
T Consensus 190 ~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 190 EKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CEEEEecCCCcEEEEECCCCceecch
Confidence 555444 788999999988888777
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.84 Score=49.84 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=69.3
Q ss_pred EEeEecCCcceEEEEe--CCEEEEEE--CCcEEEEEecCCcceeeecCCC-----CCCCCceEEcCCCCeEE-EEe--CC
Q 043572 218 LKEIQCMDGVKTMVWL--NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPD-----VSCPPMLKLLSKEQKVL-LLV--DN 285 (997)
Q Consensus 218 ~kei~~~~~~~~l~~~--~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~-----~~~~p~i~~~~~~~e~L-l~~--~~ 285 (997)
...+.....+.++.|. +..++++. .....++|+.++.....++... ....|.-..+..++.++ ++. ++
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 3334445566777776 34566664 4578999998886543332211 12233222333333443 332 33
Q ss_pred eEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCceEEEEecCC
Q 043572 286 VGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 286 ~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
....+|.. |...+ .+.-...|..+.+. ..+|++-. .+.|.|+++.+++.+++|++..
T Consensus 230 ~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 230 RVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred eEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 34445543 33221 22113446666664 34776542 6789999999999999998754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.031 Score=66.28 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
..-.|+..|||..+||++.|.+-.|+...+-. +.+|-+ .+.++.+|.-+.+ ...|+++|+- ++|
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-------------r~sf~~-~~ah~~~V~gla~-D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-------------RKSFGD-SPAHKGEVTGLAV-DGTNRLLVSAGADG 515 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCee-------------eccccc-CccccCceeEEEe-cCCCceEEEccCcc
Confidence 44567889999999999999999999975431 111100 0126789999875 4566677722 368
Q ss_pred eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 111 CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
.+.+|+.....++.++.---+.+.+..+
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~h---------------------------------------------------- 543 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYH---------------------------------------------------- 543 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeee----------------------------------------------------
Confidence 9999998775543322111111111110
Q ss_pred cCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCC
Q 043572 191 CRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVS 265 (997)
Q Consensus 191 ~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~ 265 (997)
..+..++++. .=+|.+|.... .+.+|++. ..+.+..++|.. .+|+.|.. ....+.|+-||..++-+.++.
T Consensus 544 -r~s~l~a~~~ddf~I~vvD~~t--~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~-- 618 (910)
T KOG1539|consen 544 -RVSDLLAIALDDFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS-- 618 (910)
T ss_pred -ehhhhhhhhcCceeEEEEEchh--hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC--
Confidence 0011122232 23455554432 34556665 456788999885 45888865 678899999999888887764
Q ss_pred CCCceEEcCCCCeEEEEe
Q 043572 266 CPPMLKLLSKEQKVLLLV 283 (997)
Q Consensus 266 ~~p~i~~~~~~~e~Ll~~ 283 (997)
++.-..+++++.||.+.
T Consensus 619 -~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 619 -PCTSLSFSPNGDFLATV 635 (910)
T ss_pred -cceeeEECCCCCEEEEE
Confidence 12234455566777663
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.64 E-value=2.9 Score=53.57 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=55.7
Q ss_pred ChhHHHHHHhhcC--ChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHH
Q 043572 586 HLRTLAFLYASKG--MSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHL 663 (997)
Q Consensus 586 ~~~~L~~ly~~~~--~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~ 663 (997)
+...++.=|.+++ ++++||...+++.... ...+.++++||.-+.|.+.+++.+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~-------------------------~~~ae~alkyl~fLvDvn~Ly~~A 868 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREED-------------------------PESAEEALKYLCFLVDVNKLYDVA 868 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcC-------------------------hHHHHHHHhHheeeccHHHHHHHH
Confidence 4456666788888 9999999999988541 123567888988888888888887
Q ss_pred hhhhccCchhhhhhcccccccCCCChhHHHHHhhc
Q 043572 664 GWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 664 ~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~ 698 (997)
.=+. |-+.++ +... ..+.||..-++||++
T Consensus 869 LG~Y--Dl~Lal--~VAq--~SQkDPKEYLPfL~~ 897 (928)
T PF04762_consen 869 LGTY--DLELAL--MVAQ--QSQKDPKEYLPFLQE 897 (928)
T ss_pred hhhc--CHHHHH--HHHH--HhccChHHHHHHHHH
Confidence 5443 333333 3322 246788887777764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=3.8 Score=48.48 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHH-HHHHHHhccCchhhhcccCC--CCcccHHHHHHHHHHcCChhHHHH
Q 043572 517 LLELAIRNITRYLEVSRKKELTI-LVKEGVDTL-LMYLYRALNRVHDMENLAPS--ENSCIVEELETLLDESGHLRTLAF 592 (997)
Q Consensus 517 l~~~a~~~L~~yL~~~r~~~~~~-~~~~~vDT~-Ll~~y~~~~~~~~l~~ll~~--~n~c~~e~~~~~L~~~~~~~~L~~ 592 (997)
.++.|..++..|+-..+.=.-+. -.-.--||. ++.||.+.+.-++|..+.+. +++--++...+++...|+-+..+.
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 34667777666654332211111 112233333 66777776655555555432 345556667777777777777777
Q ss_pred HHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhcc-Cc
Q 043572 593 LYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADI-NA 671 (997)
Q Consensus 593 ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~-~p 671 (997)
-|.+.++...|+..-..|.+-. .+.+.++-.+-.+--.||.+|+..+++. +.
T Consensus 874 a~Lr~s~pkaAv~tCv~LnQW~---------------------------~avelaq~~~l~qv~tliak~aaqll~~~~~ 926 (1189)
T KOG2041|consen 874 AYLRRSLPKAAVHTCVELNQWG---------------------------EAVELAQRFQLPQVQTLIAKQAAQLLADANH 926 (1189)
T ss_pred HHHhccCcHHHHHHHHHHHHHH---------------------------HHHHHHHhccchhHHHHHHHHHHHHHhhcch
Confidence 7777777777777766665421 1223333333334456788888888764 44
Q ss_pred hhhhhhcccccccCCCChhHHHHHhhc
Q 043572 672 VLAVKVLTSEKRINQLSPDKVIAAIDS 698 (997)
Q Consensus 672 ~~~l~if~~~~~~~~l~~~~Vl~~L~~ 698 (997)
-.+++.-..- -..+|..+++..+.+
T Consensus 927 ~eaIe~~Rka--~~~~daarll~qmae 951 (1189)
T KOG2041|consen 927 MEAIEKDRKA--GRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHhhhc--ccchhHHHHHHHHhH
Confidence 4455554321 246888888877754
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.3 Score=52.66 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=132.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. |+.+.-|.+||.+-.|+....-= -+-|-. ..+.|+-+..-...+ .+++.|
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-------------~vTFte----Hts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-------------FVTFTE----HTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-------------EEEecc----CCCceEEEEEEecCC-EEEEee
Confidence 3578999864 55899999999999998875320 111111 456788888777777 555465
Q ss_pred -CCeEEEeecCccccccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 -DQCLFLTDSLLTQPLKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 -d~~l~~~~l~~l~~~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
||+|++|+|..+.-.-+.+ .-.-.+++|+|+ +
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-------------------s-------------------------- 446 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-------------------S-------------------------- 446 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcC-------------------C--------------------------
Confidence 9999999997653211111 111122333322 1
Q ss_pred hcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCc-ce--EEEEeCCEEEEE-ECCcEEEEEecC--Ccceeee
Q 043572 186 EEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDG-VK--TMVWLNDSIIVG-TVNGYSLFSCVT--GQSGVIF 259 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~-~~--~l~~~~~~l~vg-~~~~y~lidl~~--g~~~~l~ 259 (997)
...+|++.....-||-|+-..=+.+--++-.+. |. ++.|.++.|.=| -.+...+.|+-+ |++.++=
T Consensus 447 --------GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 447 --------GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred --------CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 124566777776677776321122111233344 44 366667766666 455677777753 3555542
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEe-C-CeEEE--------EccCCCc----ccc---ccccC-----CCCCeEEE--eCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLV-D-NVGVF--------VDAHGQP----VGG---SLVFR-----KSPDAVGE--LSM 315 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~-~-~~g~f--------v~~~G~~----~r~---~i~w~-----~~P~~i~~--~~P 315 (997)
-.++ -..+...|++.|+.+++ | .+.+| -+.+|+. -|. .+.=. .+-+.+.| +..
T Consensus 519 i~sd---vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 519 IRSD---VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred eccc---eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 2221 11233335566777764 3 34444 1122321 111 12111 12233333 355
Q ss_pred EEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 316 YVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 316 Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+|++-. .+.|-||++.++.++|...++.
T Consensus 596 ~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 596 CILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred EEEecCCcccEEEEECchhheeeeEEecc
Confidence 888764 6889999999999999887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.17 E-value=2.6 Score=45.93 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=71.5
Q ss_pred CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC--cEEEEEecCCcceeeecCCCCCCCCceEEcCCCC
Q 043572 202 GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQ 277 (997)
Q Consensus 202 kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~ 277 (997)
.+.+.+|..... ..+..+.....+.++.|. +..++++... ....+|..++........+ ..|....+..++
T Consensus 94 ~~~l~~~d~~~~--~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg 168 (300)
T TIGR03866 94 DNLVTVIDIETR--KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADG 168 (300)
T ss_pred CCeEEEEECCCC--eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCC
Confidence 355666666543 333444444456778887 3456666543 3556787766554333332 234333444344
Q ss_pred eEE-EEe--CCeEEEEccC-CCccccccccC--------CCCCeEEEe--CcEEEEE--ECCeEEEEecCCCceEEEEec
Q 043572 278 KVL-LLV--DNVGVFVDAH-GQPVGGSLVFR--------KSPDAVGEL--SMYVVVL--RGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 278 e~L-l~~--~~~g~fv~~~-G~~~r~~i~w~--------~~P~~i~~~--~PYll~~--~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..| +.. ++...++|.. |...+ .+.+. ..|..+.+. ..++++. ..+.+.|+++.++..++.+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 247 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIK-KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV 247 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeee-eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe
Confidence 544 443 4555566654 33322 22221 135556655 3465443 356899999999888877643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.65 Score=53.31 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=124.1
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+..+-+++|++..+..+..--...|++.|++.+.-
T Consensus 143 lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp--------------------------------------------- 177 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP--------------------------------------------- 177 (566)
T ss_pred hhcceEEEEecCCccceeeeeeccceeeEEecCCC---------------------------------------------
Confidence 56788999999887644333336788888876510
Q ss_pred cccccCCceEEEEEEC------ceEEEEEEeCCeE---EEEEeEecCCcceEEEEe--CCE-EEEEEC---C--------
Q 043572 187 EEQHCRGDNVFAVIIG------KRLVLIELVNGSF---VILKEIQCMDGVKTMVWL--NDS-IIVGTV---N-------- 243 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~k------kki~i~~~~~~~~---~~~kei~~~~~~~~l~~~--~~~-l~vg~~---~-------- 243 (997)
....+||.+. ..+.||.+....+ ...|.+.-.+.| .|.|. |.. ||++.. +
T Consensus 178 ------~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 178 ------EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred ------CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 1123444332 3578888873322 223555444444 67788 333 666633 1
Q ss_pred -cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC---CeEEEEccCCCccccccccCCCCCeEEEeCc---E
Q 043572 244 -GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD---NVGVFVDAHGQPVGGSLVFRKSPDAVGELSM---Y 316 (997)
Q Consensus 244 -~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~---~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P---Y 316 (997)
.-++++++ | -.-.++....+.-..++--++..||.+|++ ...-|.|..|++. ..+..-|.+-++..| |
T Consensus 251 q~Lyll~t~-g-~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 251 QTLYLLATQ-G-ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---FDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred ceEEEEEec-C-ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---EeCCCCCccceEECCCCCE
Confidence 24566665 2 223344443332222333345669999988 4567788899987 677778888888877 4
Q ss_pred EEE--E--ECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcC---------CeEEEEeecCHH
Q 043572 317 VVV--L--RGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATP---------TKVICYQKVPSE 379 (997)
Q Consensus 317 ll~--~--~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~---------~~V~~l~~~~~~ 379 (997)
|+. | .++.|||.++.+..++-++...++ .+...+- +|..|+.|+. -.||-+.-..+.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-----t~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-----TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCCc-----eEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 442 2 258999999999777766655443 2222111 2455555553 367777665543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.58 Score=49.75 Aligned_cols=204 Identities=16% Similarity=0.092 Sum_probs=119.5
Q ss_pred cccccccCCCCCCCccceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 14 PLSQFDLSHYSRSSPIRSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
+...|+. +-+|.- .|++++.. ++.+.-|+=||.+..|.+.......++. .. -...|
T Consensus 16 ~~kd~ev-~~pP~D-----sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka--------~~-------~~~~P 74 (347)
T KOG0647|consen 16 PNKDYEV-PNPPED-----SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA--------QQ-------SHDGP 74 (347)
T ss_pred cccceec-CCCccc-----chheeEeccccCceEEecccCCceEEEEEecCCcccchh--------hh-------ccCCC
Confidence 4455555 233433 45555543 3445589999999999998764322210 01 15678
Q ss_pred ceEEEeecccCcEEEEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccc
Q 043572 91 VESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQ 167 (997)
Q Consensus 91 I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (997)
|-.+.-..+..++...-|||.+.+|+|.+=++..- -..+|-|++|--
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~------------------------------ 124 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPG------------------------------ 124 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecC------------------------------
Confidence 99999889999888888999999999977433210 112233332220
Q ss_pred hhhhhccCccccCCccchhcccccCCceEEEEEEC---ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-C
Q 043572 168 RLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG---KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-N 243 (997)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k---kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~ 243 (997)
..+ -|+++. |.|.. |....-..+-.+.+|+.+-++......++||+. +
T Consensus 125 -------------------------~~~-~cl~TGSWDKTlKf--WD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 125 -------------------------MNY-QCLVTGSWDKTLKF--WDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred -------------------------CCc-ceeEecccccceee--cccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 011 133332 33333 443344566677899999999999999999965 6
Q ss_pred cEEEEEecCCcceeeecCC-CCCCCCceEEcCCCCeEEEEeC--CeEEEEccCCCc
Q 043572 244 GYSLFSCVTGQSGVIFTLP-DVSCPPMLKLLSKEQKVLLLVD--NVGVFVDAHGQP 296 (997)
Q Consensus 244 ~y~lidl~~g~~~~l~~~~-~~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~~G~~ 296 (997)
+..+++|+++.+.---.-+ -+-+.-+|+.+.+.+-|+|++= ..+++.=.+|++
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 8999999866432111000 0011224555555567788753 234443335555
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.28 Score=55.19 Aligned_cols=144 Identities=12% Similarity=0.180 Sum_probs=98.2
Q ss_pred eeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 33 SISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
-|.|.+.... -++-|+-||.+-.|......+. ...+. .--||+.+..+|... +++ .|+
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~------------v~eln-----hg~pVe~vl~lpsgs-~ia-sAg 215 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR------------VVELN-----HGCPVESVLALPSGS-LIA-SAG 215 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCce------------eEEec-----CCCceeeEEEcCCCC-EEE-EcC
Confidence 4666665433 5889999999999988654210 12221 456999999999988 777 676
Q ss_pred C-eEEEeecCccc-cccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 Q-CLFLTDSLLTQ-PLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~-~l~~~~l~~l~-~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
| .+.+|+|..-- .+.. ..-.|-||+.++..
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s----------------------------------------------- 248 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS----------------------------------------------- 248 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeec-----------------------------------------------
Confidence 5 99999986311 1111 11345555555421
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEE
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFS 249 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lid 249 (997)
++...+..+..+.+.+|..++ ++.+.....|.++.+|+... ..+++|..++-..+-
T Consensus 249 -----~~~rLlS~sLD~~VKVfd~t~--~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 249 -----DSTRLLSGSLDRHVKVFDTTN--YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred -----CCceEeecccccceEEEEccc--eEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 223456778889999999654 78877888999999999885 459999887665554
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.003 Score=47.88 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=31.3
Q ss_pred cCccccCccC-CccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 942 LCDSCHARLG-TKLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l~-~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.|++|...+. ...++..||||+||..|+... ....||++|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999995 466888999999999999875 244687653
|
... |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.31 Score=51.95 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=134.7
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEee
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTD 116 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~ 116 (997)
+..||..|.+|+.+|.+..|....... .+.+. -.-+||+.+.--++..+||-+-.|..+.+|+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~i--------------ar~ls---aH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRI--------------ARMLS---AHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccch--------------hhhhh---ccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 446899999999999999998875431 11111 1566999999888888777766789999999
Q ss_pred cCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceE
Q 043572 117 SLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNV 196 (997)
Q Consensus 117 l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 196 (997)
+..-.|...+..-..|.....++. .....
T Consensus 94 l~~gs~l~rirf~spv~~~q~hp~---------------------------------------------------k~n~~ 122 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSPVWGAQWHPR---------------------------------------------------KRNKC 122 (405)
T ss_pred ccCCCceeEEEccCccceeeeccc---------------------------------------------------cCCeE
Confidence 976555443322222211112221 12223
Q ss_pred EEEEECceEEEEEEeCCeEEEE-E--eEecCCcceEEEE--eCCEEEEEECCc-EEEEEecCCcceeeecCCC-CCCCCc
Q 043572 197 FAVIIGKRLVLIELVNGSFVIL-K--EIQCMDGVKTMVW--LNDSIIVGTVNG-YSLFSCVTGQSGVIFTLPD-VSCPPM 269 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~-k--ei~~~~~~~~l~~--~~~~l~vg~~~~-y~lidl~~g~~~~l~~~~~-~~~~p~ 269 (997)
++..++..-.+..+++.....+ + +..+...+....| .|+.|+.|+.++ +.++|..|-....-|.+.. .+.+.+
T Consensus 123 va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 123 VATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI 202 (405)
T ss_pred EEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence 4444556666666665433322 1 1111112222223 367899998775 6667877665555566554 344556
Q ss_pred eEEcCCCCeEEEE-eCCeEEEEc--------cCCCccc--c------ccccCCCCCeEEEeCcEEEEEECC--eEEEEec
Q 043572 270 LKLLSKEQKVLLL-VDNVGVFVD--------AHGQPVG--G------SLVFRKSPDAVGELSMYVVVLRGG--KMELYHK 330 (997)
Q Consensus 270 i~~~~~~~e~Ll~-~~~~g~fv~--------~~G~~~r--~------~i~w~~~P~~i~~~~PYll~~~~~--~ieI~~~ 330 (997)
+.+.. ++.|++. +|...-.++ .+|.+.. + .++|..- .+.-..-||++-+.. .+.|-.-
T Consensus 203 ~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c--cfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 203 IVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC--CFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred EEecc-CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe--eecCCccEEEeccccceeEEEEec
Confidence 66665 2244443 344333332 2344431 1 3567532 122245699987754 5666667
Q ss_pred CCCceEEEEecCC
Q 043572 331 KSGICVQAVTFGG 343 (997)
Q Consensus 331 ~~~~lvQ~i~~~~ 343 (997)
..|.||..+.-+.
T Consensus 280 ~~GsLVKILhG~k 292 (405)
T KOG1273|consen 280 SIGSLVKILHGTK 292 (405)
T ss_pred CCcceeeeecCCc
Confidence 7899999886554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1 Score=50.52 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=98.0
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|+..+.. -|.++.-+|.+-.|.+++..+. .++... +.+.||......|.....++ .++
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------~lqS~~------l~~fPi~~a~f~p~G~~~i~-~s~ 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------KLQSIH------LEKFPIQKAEFAPNGHSVIF-TSG 277 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------hheeee------eccCccceeeecCCCceEEE-ecc
Confidence 47888887655 6999999999999999987652 222222 57789999999998874444 555
Q ss_pred C--eEEEeecCccc--cccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 110 Q--CLFLTDSLLTQ--PLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 110 ~--~l~~~~l~~l~--~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
. .++.|+|.+-+ ++.. ..+-|++..|.+.+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-------------------------------------------- 313 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-------------------------------------------- 313 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecC--------------------------------------------
Confidence 4 88888885522 1111 11233455555432
Q ss_pred chhcccccCCceEEEEEECce-EEEEEEeCCeEEEEEeEecCCcceEEEEeCCE---EEEEECCcEEEEEecCCcceeee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVILKEIQCMDGVKTMVWLNDS---IIVGTVNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~---l~vg~~~~y~lidl~~g~~~~l~ 259 (997)
.+. .|+++.+.. |.+..-+.+++ +..+.+++.+..++|..+. +.+|...+..++|+.+....-.|
T Consensus 314 --------d~~-fia~~G~~G~I~lLhakT~el--i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 314 --------DSN-FIAIAGNNGHIHLLHAKTKEL--ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred --------CCC-eEEEcccCceEEeehhhhhhh--hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 111 233333332 44444443322 2334467788888888654 33334568999999876555556
Q ss_pred cCCC
Q 043572 260 TLPD 263 (997)
Q Consensus 260 ~~~~ 263 (997)
...+
T Consensus 383 ~D~G 386 (514)
T KOG2055|consen 383 VDDG 386 (514)
T ss_pred eecC
Confidence 5543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3.2 Score=44.61 Aligned_cols=153 Identities=19% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
++++|..|.+-|..+..|-+-.|++|++|+|-.-... .+-...+-...|.++
T Consensus 99 H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~~pi~AfDp--------------------------- 150 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSGRPIAAFDP--------------------------- 150 (311)
T ss_pred CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc-eEEecCCCcceeECC---------------------------
Confidence 6889999999999998887677999999998532111 011111111111111
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEECc-eEEEEEEeC---CeEEEEEeEecC--C--cceEEEEe--CCE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGK-RLVLIELVN---GSFVILKEIQCM--D--GVKTMVWL--NDS 236 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kk-ki~i~~~~~---~~~~~~kei~~~--~--~~~~l~~~--~~~ 236 (997)
....++++... .|.+|.... +-|.. +.+. + ....|.|. |..
T Consensus 151 --------------------------~GLifA~~~~~~~IkLyD~Rs~dkgPF~t---f~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 151 --------------------------EGLIFALANGSELIKLYDLRSFDKGPFTT---FSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred --------------------------CCcEEEEecCCCeEEEEEecccCCCCcee---EccCCCCccceeeeEEcCCCCE
Confidence 11456777766 788887753 22333 2232 2 23666666 446
Q ss_pred EEEEECCc-EEEEEecCCcceeeecCCC-CCCCCceEEcCCCCeEEEEeC--CeEEEEcc-CCCc
Q 043572 237 IIVGTVNG-YSLFSCVTGQSGVIFTLPD-VSCPPMLKLLSKEQKVLLLVD--NVGVFVDA-HGQP 296 (997)
Q Consensus 237 l~vg~~~~-y~lidl~~g~~~~l~~~~~-~~~~p~i~~~~~~~e~Ll~~~--~~g~fv~~-~G~~ 296 (997)
|.+++..+ -.++|--+|+...-|.... .+.-|.-+.+.++.+|+++.. +...+.+. .|.+
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 88887765 5678888898665554332 223455566644568888743 44445554 3443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=6.1 Score=47.03 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=53.9
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL- 105 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv- 105 (997)
....|.|++.. ++.|+.|+.||.+..|.+........ ...+...+. -..++|..+..-|..+.+|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQ---GHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEec---CCCCcEEEEEeCcCCCCEEEE
Confidence 34578998864 35799999999999999875421000 000111111 15678999999887643444
Q ss_pred EecCCeEEEeecCcccc
Q 043572 106 LFCDQCLFLTDSLLTQP 122 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~ 122 (997)
+-.|++|.+|++..-.+
T Consensus 144 gs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 144 AGADMVVNVWDVERGKA 160 (493)
T ss_pred EeCCCEEEEEECCCCeE
Confidence 34588999999876443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.4 Score=44.41 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=133.8
Q ss_pred eeeeEEe--ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPIS--DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~--~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.++.+++ ++|..|.=|..++....|.+++..-- .... .+ -...-|+|+.--|...-++++-+
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~----------~~~~--~~---gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR----------KELV--YR---GHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhh----------hhhc--cc---CCCcchhhheeCCCCCcceEEecC
Confidence 3555555 56889999999999999999876310 0000 00 12336999999988776666444
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+++++|+.-.-.|+..+....|-..++..|
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp------------------------------------------------- 116 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENINITWSP------------------------------------------------- 116 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcceEEEEcC-------------------------------------------------
Confidence 6699999987766665444333333333222
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEECCcEEEEEecCCcceeeecCCCCCCC
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
++.+.++...++.|.++-.. .++.+.+...+-.+.-++|.. +.+++.+.. .|. ..++.++ +++
T Consensus 117 ---~g~~~~~~~kdD~it~id~r--~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G--------lG~-v~ILsyp--sLk 180 (313)
T KOG1407|consen 117 ---DGEYIAVGNKDDRITFIDAR--TYKIVNEEQFKFEVNEISWNNSNDLFFLTNG--------LGC-VEILSYP--SLK 180 (313)
T ss_pred ---CCCEEEEecCcccEEEEEec--ccceeehhcccceeeeeeecCCCCEEEEecC--------Cce-EEEEecc--ccc
Confidence 12222333333344444333 355555555555566666664 235555432 122 2233222 122
Q ss_pred C-----------ceEEcC-CCCeEEEEe-CCeEEEEccCC-Ccccc--ccccCCCCCeEEEeCcEEEEEEC-CeEEEEec
Q 043572 268 P-----------MLKLLS-KEQKVLLLV-DNVGVFVDAHG-QPVGG--SLVFRKSPDAVGELSMYVVVLRG-GKMELYHK 330 (997)
Q Consensus 268 p-----------~i~~~~-~~~e~Ll~~-~~~g~fv~~~G-~~~r~--~i~w~~~P~~i~~~~PYll~~~~-~~ieI~~~ 330 (997)
| ++..++ ++.-|.++. |...=.-|.+- -+.|. .+.|+-.-.++.+..-||-..++ -.|.|-.+
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEec
Confidence 2 223332 222333432 22222223222 13342 57888777788888889987775 57999999
Q ss_pred CCCceEEEEecCCCC
Q 043572 331 KSGICVQAVTFGGEG 345 (997)
Q Consensus 331 ~~~~lvQ~i~~~~~~ 345 (997)
+||.-+-.|+..++.
T Consensus 261 etGd~~~eI~~~~~t 275 (313)
T KOG1407|consen 261 ETGDRVWEIPCEGPT 275 (313)
T ss_pred ccCCeEEEeeccCCc
Confidence 999999999988753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=8.4 Score=46.48 Aligned_cols=130 Identities=9% Similarity=0.100 Sum_probs=67.3
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCC--ce--EEc
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPP--ML--KLL 273 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p--~i--~~~ 273 (997)
..+.|.+|.+..+. ....+..++.+.+++|. |..++.|+ .+...++|+.++....-+.--. +... .+ ..+
T Consensus 146 ~DgtIrIWDl~tg~--~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~-g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEK--RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD-GGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCc--EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc-CCceeEEEEeeeE
Confidence 45678888876653 22344456778999997 44465564 4579999999876543332211 1111 11 112
Q ss_pred CCCCeEEEE--eCC----eEEEEccC--CCccccccccCCCCC--eEEEeCc----EEEEEECCeEEEEecCCCc
Q 043572 274 SKEQKVLLL--VDN----VGVFVDAH--GQPVGGSLVFRKSPD--AVGELSM----YVVVLRGGKMELYHKKSGI 334 (997)
Q Consensus 274 ~~~~e~Ll~--~~~----~g~fv~~~--G~~~r~~i~w~~~P~--~i~~~~P----Yll~~~~~~ieI~~~~~~~ 334 (997)
+.++.++++ ++. ...+.|.. +.+.. ++.....+. .-.++.+ |+.+-.++.|.++.+.++.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 233455554 232 23444543 23321 222222222 2234433 3334457889999987764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.7 Score=49.92 Aligned_cols=289 Identities=13% Similarity=0.105 Sum_probs=153.6
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
-..+.||++..+..+.+|++.|.|+.|+-..+.- .+ .++ -.+..|+-...+...+.+.++-+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------------~~-~~~--~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------------RK-LKN--EGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhh--------------hc-ccc--cCccceEEEEEecchhHhhhhhcC
Confidence 3468999999999999999999999998765431 01 111 02344555555655554554333
Q ss_pred CCeEEEeecCcccccccc---cccc--c--eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 109 DQCLFLTDSLLTQPLKKL---GFLK--G--ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~---~~~k--g--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
.|.|.+|.+..=.|-+.+ ...| + |+..++... |
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~----------------------------------------~ 136 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN----------------------------------------G 136 (726)
T ss_pred CceEEeehhhccCCCcceeeccccccCCceEEEEEeccc----------------------------------------c
Confidence 458899988773332221 1112 3 444443221 1
Q ss_pred ccchhcccccCCceEEEEEEC-ceEEEEEEeC-CeEE-EEEe-EecCCcceEEEEeCCEEEEEECCcEEEEEecCCccee
Q 043572 182 VKVKEEEQHCRGDNVFAVIIG-KRLVLIELVN-GSFV-ILKE-IQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~-~~~~-~~ke-i~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~ 257 (997)
. +++++-. -||.+.+++. ..|. ..++ ...+..|..+......+.|++-..-.+++++.++...
T Consensus 137 ~-------------k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE~eti~Q 203 (726)
T KOG3621|consen 137 M-------------KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTEAETITQ 203 (726)
T ss_pred c-------------EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhheeecchhHHHH
Confidence 1 1222211 1223333332 1111 1223 3356678888888888999988888888887655333
Q ss_pred eecCCCCCCCCceEE-cCC----CCeEEEEe--CCeEEEEccCCCccc-------------cccccCC--C---------
Q 043572 258 IFTLPDVSCPPMLKL-LSK----EQKVLLLV--DNVGVFVDAHGQPVG-------------GSLVFRK--S--------- 306 (997)
Q Consensus 258 l~~~~~~~~~p~i~~-~~~----~~e~Ll~~--~~~g~fv~~~G~~~r-------------~~i~w~~--~--------- 306 (997)
+=.-+..+..+.-+. +++ ..-+|+|. +.----+|..|...+ +.|...+ .
T Consensus 204 IG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~ 283 (726)
T KOG3621|consen 204 IGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSG 283 (726)
T ss_pred hcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCC
Confidence 211111111111111 111 12344441 111111233332110 0111111 1
Q ss_pred ------CCeEEEeCcEEEEEECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEeecCHHH
Q 043572 307 ------PDAVGELSMYVVVLRGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQKVPSEE 380 (997)
Q Consensus 307 ------P~~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~~ 380 (997)
+.....+.-.++++++-+|.|....+. |++--... +.-|....+++ +.+|++.-++.+..+.......
T Consensus 284 ~q~ls~~k~~~l~~~~vLa~te~Giyv~d~~~~---~v~l~se~--~~DI~dVs~~~-neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 284 TQHLSLSKSSTLHSDRVLAWTEVGIYVFDSNNS---QVYLWSEG--GHDILDVSHCG-NEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred ccccccceeEEeecceEEEeecceEEEEEeccc---eEEEeecC--CCceeEEeecC-ceEEEEecCCceeEEEeehhHH
Confidence 123344455799999999999988874 44443321 23344443343 3577777778888888888999
Q ss_pred HHHHHHhcCChHHH
Q 043572 381 QIKDLLRKKDFKEA 394 (997)
Q Consensus 381 qi~~Ll~~~~~eeA 394 (997)
.++.|+..|.+-.+
T Consensus 358 ~l~~l~~~G~~m~~ 371 (726)
T KOG3621|consen 358 KLESLCRCGKEMFV 371 (726)
T ss_pred HHHHHHhhchhhhh
Confidence 99999999865543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.27 E-value=5.9 Score=43.54 Aligned_cols=135 Identities=13% Similarity=0.232 Sum_probs=80.8
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCC--cceEEEEeCCE-EEEE---ECCcEEEEEecC--CcceeeecCC----CCCCCC
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMD--GVKTMVWLNDS-IIVG---TVNGYSLFSCVT--GQSGVIFTLP----DVSCPP 268 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~--~~~~l~~~~~~-l~vg---~~~~y~lidl~~--g~~~~l~~~~----~~~~~p 268 (997)
.-+||.+|.+.++.+....+..+++ .|+.|.|..+. +++. -.+....+..+. |+...|=.++ +-.-.+
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 4578999999988777766644443 67999999643 4444 234555555554 4433332221 111111
Q ss_pred --ceEEcCCCCeEEEEeC----CeEEE-EccCCCcccccccc---CCC-CCeEEEe--CcEEEEEEC--CeEEEEecC--
Q 043572 269 --MLKLLSKEQKVLLLVD----NVGVF-VDAHGQPVGGSLVF---RKS-PDAVGEL--SMYVVVLRG--GKMELYHKK-- 331 (997)
Q Consensus 269 --~i~~~~~~~e~Ll~~~----~~g~f-v~~~G~~~r~~i~w---~~~-P~~i~~~--~PYll~~~~--~~ieI~~~~-- 331 (997)
....+..++.||.++| .+++| |+..|...+ .+.| .+. |+.+.+. .-||++..+ +.|.|+.+.
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~-~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLE-LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEE-EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 2223345679999876 46666 887765443 2222 233 8777665 559999874 578888765
Q ss_pred CCceE
Q 043572 332 SGICV 336 (997)
Q Consensus 332 ~~~lv 336 (997)
||.|-
T Consensus 324 TG~L~ 328 (346)
T COG2706 324 TGRLT 328 (346)
T ss_pred CceEE
Confidence 56554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1 Score=47.50 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=98.2
Q ss_pred eeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccC-CCcceEEEeeccc-CcEEEE-e
Q 043572 33 SISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVA-DSPVESIFVLDDV-GKVLLL-F 107 (997)
Q Consensus 33 ~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~qi~vl~~~-~~lLv~-l 107 (997)
-+.|++.. +.++.-|+.|-++..|+.-..-.+. ..+ -+ +.=|.++...|.. +-.+|. -
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t--------------~~~---~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT--------------IHE---DSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecccEEEE--------------Eec---CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 44555532 3467778888887777776543211 111 13 5568999999986 434441 2
Q ss_pred cCCeEEEeecCccccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.|++|.+|+|..++..+. ++...-++..++.++
T Consensus 170 ~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD---------------------------------------------- 203 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD---------------------------------------------- 203 (315)
T ss_pred CCceEEEEccCCcchhhccccccccEEEEEECCC----------------------------------------------
Confidence 278999999998875443 345555666665431
Q ss_pred cccccCCceEEEEEECc--eEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE--EEEEECCcEEEEEecCCcceeeecCC
Q 043572 187 EEQHCRGDNVFAVIIGK--RLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS--IIVGTVNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kk--ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~--l~vg~~~~y~lidl~~g~~~~l~~~~ 262 (997)
++ +|....| +++++.+..++- +..+.-.+.|.+++|..+. ||.|+..+..|.|++++....-+.++
T Consensus 204 ------Gs--lcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 204 ------GS--LCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred ------CC--EEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 21 3444444 355555555432 3334345678999999765 99999999999999988765544444
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=4.4 Score=48.84 Aligned_cols=82 Identities=10% Similarity=-0.034 Sum_probs=53.5
Q ss_pred eeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE-
Q 043572 31 SLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL- 106 (997)
Q Consensus 31 ~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~- 106 (997)
...|.|++.. ++.|+.|+.||.+..|.+........ ....+...+. -...+|..|..-|....+|++
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------~i~~p~~~L~---gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------EIKDPQCILK---GHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc------ccccceEEee---cCCCcEEEEEECCCCCeEEEEE
Confidence 3578998875 45789999999999999865321000 0000111111 145689999999987756553
Q ss_pred ecCCeEEEeecCccc
Q 043572 107 FCDQCLFLTDSLLTQ 121 (997)
Q Consensus 107 l~d~~l~~~~l~~l~ 121 (997)
-.|++|.+|++..-+
T Consensus 145 S~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 145 GFDSFVNIWDIENEK 159 (568)
T ss_pred eCCCeEEEEECCCCc
Confidence 348899999987643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.3 Score=47.39 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCCCccceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 24 SRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 24 ~~~~~~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
+|.-.|++.++. --.++|++++=||.|.+|.+..... ..++. ...||..+...++.. +
T Consensus 11 pP~d~IS~v~f~---~~~~~LLvssWDgslrlYdv~~~~l-------------~~~~~-----~~~plL~c~F~d~~~-~ 68 (323)
T KOG1036|consen 11 PPEDGISSVKFS---PSSSDLLVSSWDGSLRLYDVPANSL-------------KLKFK-----HGAPLLDCAFADEST-I 68 (323)
T ss_pred CChhceeeEEEc---CcCCcEEEEeccCcEEEEeccchhh-------------hhhee-----cCCceeeeeccCCce-E
Confidence 344444444543 2368899999999999999987531 12221 677999999888666 7
Q ss_pred EEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
++.-.||.|+.|++..-....-.+--+++.++...+..
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~------------------------------------------ 106 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV------------------------------------------ 106 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEeeccC------------------------------------------
Confidence 77678999999999763221112233455555432210
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEecCC
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g 253 (997)
...+.-.-.++|.++.-.. -...-.+..+..|-+|...|+.|+||+. ....++|+.+-
T Consensus 107 ----------~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 107 ----------GCVISGSWDKTIKFWDPRN--KVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ----------CeEEEcccCccEEEEeccc--cccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 0111112223444432221 0111112335577899999999999855 58899999743
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.3 Score=42.83 Aligned_cols=138 Identities=10% Similarity=0.083 Sum_probs=84.5
Q ss_pred ceEEEEEEeC--CeEEEEEeEecCCcc-eEEEEeC--CEEEEEE--CCcEEEEEecC-Ccceeee---cCCCC-------
Q 043572 203 KRLVLIELVN--GSFVILKEIQCMDGV-KTMVWLN--DSIIVGT--VNGYSLFSCVT-GQSGVIF---TLPDV------- 264 (997)
Q Consensus 203 kki~i~~~~~--~~~~~~kei~~~~~~-~~l~~~~--~~l~vg~--~~~y~lidl~~-g~~~~l~---~~~~~------- 264 (997)
-.+.-|+|.. +++..+.+...++.+ ..++... ..+++|. ...+.++-+++ |...+.. ...+.
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 3688899986 578888777676655 7777774 3577772 34677777743 5443332 11111
Q ss_pred CCCCceEEcCCCCeEEEEe----CCeEEEEccCCCcccc---ccccCCCCCeEEEeCc----EEEEEECCeEEEEecCC-
Q 043572 265 SCPPMLKLLSKEQKVLLLV----DNVGVFVDAHGQPVGG---SLVFRKSPDAVGELSM----YVVVLRGGKMELYHKKS- 332 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~----~~~g~fv~~~G~~~r~---~i~w~~~P~~i~~~~P----Yll~~~~~~ieI~~~~~- 332 (997)
+..+..+.+..++.+|++. |.+.+|-=.+|..+.- .+.=-.-|+.|+++.. |++.-..++|.|+...+
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 1112344454455777765 4555654448876653 2322345999999844 66666689999998776
Q ss_pred -C--ceEEEEe
Q 043572 333 -G--ICVQAVT 340 (997)
Q Consensus 333 -~--~lvQ~i~ 340 (997)
| +.+|+|.
T Consensus 224 ~g~~~~lQ~i~ 234 (346)
T COG2706 224 VGKFEELQTID 234 (346)
T ss_pred CceEEEeeeec
Confidence 4 4588885
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.9 Score=48.43 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=131.6
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCc---cccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQ---QHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..++|++...+ .+|=++.+|+|+++.+..........+.+.... -+.+.-+ ....+-|-.+.|-++.. .|+
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgk-yla- 218 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGK-YLA- 218 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCc-EEE-
Confidence 46788887766 899999999999998865442111111000000 0011000 01234466666666655 666
Q ss_pred ec--CCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FC--DQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~--d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
.. |..+.+|+..+++++...+..+| |...|..
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr--------------------------------------------- 253 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR--------------------------------------------- 253 (479)
T ss_pred ecCCCceEEEecCcccchhhcccccccceeeeeee---------------------------------------------
Confidence 55 34888999999888765333333 2222211
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-ECCcEEEEEecCCcceeee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG-TVNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g~~~~l~ 259 (997)
.+..........+++.+|.+... ..+..+ --++.|.++... +..++|| ....-.+..+ ..+++-+|
T Consensus 254 -------~gt~~lys~s~Drsvkvw~~~~~--s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlif 323 (479)
T KOG0299|consen 254 -------KGTSELYSASADRSVKVWSIDQL--SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIF 323 (479)
T ss_pred -------cCccceeeeecCCceEEEehhHh--HHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeee
Confidence 11222344456777888777653 222221 134566666655 3569999 6677788887 34555556
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEeCCeEE-----------EE--ccCCCccc-cccc---cCCCCCeEEEeCcEEEEEEC
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLVDNVGV-----------FV--DAHGQPVG-GSLV---FRKSPDAVGELSMYVVVLRG 322 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~-----------fv--~~~G~~~r-~~i~---w~~~P~~i~~~~PYll~~~~ 322 (997)
.... +..-+++.++ +++|+-++++-.+ |+ ..+|.... +++. |-.....+.+..-...+-.+
T Consensus 324 rg~~-~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 324 RGGE-GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eCCC-CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence 5442 2333555565 4488888765222 22 22333222 1222 43322222222222222234
Q ss_pred CeEEEEecCCC----ceEEEEecCCC
Q 043572 323 GKMELYHKKSG----ICVQAVTFGGE 344 (997)
Q Consensus 323 ~~ieI~~~~~~----~lvQ~i~~~~~ 344 (997)
+.|-+--+.++ ++++.+++.+.
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~~Gf 427 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSLVGF 427 (479)
T ss_pred CceEEEEecCCccccceeeecccccE
Confidence 56666666654 56777777664
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.024 Score=48.19 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCcCccccCccCC-----------ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 940 ESLCDSCHARLGT-----------KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 940 ~~~C~vC~k~l~~-----------~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+..|++|..++.. ..++.-+|||.||.+|+.+- ....||+++
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999999932 24677789999999999853 345799765
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.02 Score=47.14 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=37.9
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
-.|++|++.+.+. ++.|+||+|...|..+. ....|| |++.+..+-+++
T Consensus 2 ~~Cpi~~~~~~~P--v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDP--VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCC--EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 3699999998874 56799999999999865 245799 999986655554
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.2 Score=45.41 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=56.7
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+=+..+ +.-|+.|+.||.+.+|.+....-. + + +-+ ...|++.=.++|+.++++..-.|
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~-----------k-v-~~G----h~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC-----------K-V-MSG----HNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCccee-----------e-E-ecC----CCCCcccccccCCCceEEEEecC
Confidence 445444444 446999999999999999875310 1 1 111 45578888899999999997778
Q ss_pred CeEEEeecCccccccccc
Q 043572 110 QCLFLTDSLLTQPLKKLG 127 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~ 127 (997)
|+|.+|++.+=+|.++++
T Consensus 212 gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred ceEEEEecCCCceeEEec
Confidence 999999988877765443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=8.5 Score=45.55 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=134.9
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. .+.|.+|-++|.+-.|++..+-- .+++ +... ..+.|+-|.-. +.+||.-+-.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-----------~~~v-i~g~---~drsIE~L~W~-e~~RLFS~g~s 89 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-----------LEPV-IHGP---EDRSIESLAWA-EGGRLFSSGLS 89 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce-----------eeEE-EecC---CCCceeeEEEc-cCCeEEeecCC
Confidence 478888853 55799999999999999886421 1111 1111 45679998877 45557665668
Q ss_pred CeEEEeecCccccccccccccceEE-EEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISV-IAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|.|.-|+|..+.|.-.....-|+-+ +|+++.
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------------------------------ 121 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------------------------------ 121 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCCc------------------------------------------------
Confidence 8999999999887655544444332 332221
Q ss_pred cccCCceEEEEEECceEEE-EEEeCCeEEEEEeEec-CCcceEEEEeCCE--EEEEECCc-EEEEEecCCcceeeecCCC
Q 043572 189 QHCRGDNVFAVIIGKRLVL-IELVNGSFVILKEIQC-MDGVKTMVWLNDS--IIVGTVNG-YSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i-~~~~~~~~~~~kei~~-~~~~~~l~~~~~~--l~vg~~~~-y~lidl~~g~~~~l~~~~~ 263 (997)
...++|.....++. +....+....-+-+.- -..+.+++|.++. |+-|+..+ ..+.|..+|+.--+..
T Consensus 122 -----~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~--- 193 (691)
T KOG2048|consen 122 -----NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT--- 193 (691)
T ss_pred -----cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee---
Confidence 12244444444222 1222222221111111 2356889999653 67777776 6777776553221110
Q ss_pred CCCCCceEEcCCCCeEEEEeCCeEEEEccCCCcc-ccccccCCCCCeEEEeCcEEEEE--ECCeEEEEecCCCceEEEEe
Q 043572 264 VSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPV-GGSLVFRKSPDAVGELSMYVVVL--RGGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~-r~~i~w~~~P~~i~~~~PYll~~--~~~~ieI~~~~~~~lvQ~i~ 340 (997)
+ ..+|-.. +.+|.|+ +.+..+=.++- +.++|.+-+..+|.++|+..
T Consensus 194 ---------~-----------------~~d~l~k~~~~iVWS-----v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 194 ---------M-----------------QLDRLSKREPTIVWS-----VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred ---------e-----------------cccccccCCceEEEE-----EEEeecCcEEEecCCceEEEEcccCcchhhhhh
Confidence 0 0112122 2367773 45555555544 34778888889999999886
Q ss_pred cCCCCCCCceecccccCCCcEEEEEc-CCeEEEEeecCHHH
Q 043572 341 FGGEGGGQCIATDEECGAGKLLVVAT-PTKVICYQKVPSEE 380 (997)
Q Consensus 341 ~~~~~~~~~i~~~~~~~~g~~~~v~s-~~~V~~l~~~~~~~ 380 (997)
.-.+.. .++... .+++.++.+. +..|..+...+-..
T Consensus 243 ~h~adV-l~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 243 CHDADV-LALAVA---DNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhcce-eEEEEc---CCCCeEEEccCCCceEEEEecCCcc
Confidence 644321 223221 1234444443 67777777766544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=94.24 E-value=12 Score=42.33 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=81.8
Q ss_pred ECceEEEEEEeCCe--EEEEEeEecC--CcceEEEEeCC--EEEEEE--CCcEEEEEec--CCcceee-----ecCCCC-
Q 043572 201 IGKRLVLIELVNGS--FVILKEIQCM--DGVKTMVWLND--SIIVGT--VNGYSLFSCV--TGQSGVI-----FTLPDV- 264 (997)
Q Consensus 201 ~kkki~i~~~~~~~--~~~~kei~~~--~~~~~l~~~~~--~l~vg~--~~~y~lidl~--~g~~~~l-----~~~~~~- 264 (997)
..++|.+|.+.... +.....+.++ ..|+.|.|..+ .++|.. .+....+++. +|....+ .+.+-.
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 45789999998764 6666666554 46899999854 577775 4578888887 4533222 222111
Q ss_pred CCCCceEEcCCCCeEEEEeC----CeEEE-Ecc-CCCcccccccc--CCCCCeEEE--eCcEEEEEE--CCeEEEEec--
Q 043572 265 SCPPMLKLLSKEQKVLLLVD----NVGVF-VDA-HGQPVGGSLVF--RKSPDAVGE--LSMYVVVLR--GGKMELYHK-- 330 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~~----~~g~f-v~~-~G~~~r~~i~w--~~~P~~i~~--~~PYll~~~--~~~ieI~~~-- 330 (997)
...|.-..+..++.||.+.+ .+.+| +|. +|..+.-...+ -..|..+++ ..-||++.. .+.|.|+.+
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 11343344444567877743 35555 433 45554422222 234999999 566888876 568999876
Q ss_pred CCCceEEE
Q 043572 331 KSGICVQA 338 (997)
Q Consensus 331 ~~~~lvQ~ 338 (997)
.+|.|.+.
T Consensus 324 ~tG~l~~~ 331 (345)
T PF10282_consen 324 DTGKLTPV 331 (345)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 47776543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=15 Score=43.32 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=120.9
Q ss_pred CCcceEEEeecccCcEEEEecCCeEEEeecCccc--cccc-cccccceEEEEeecccCCccccccccccccccccccCCc
Q 043572 88 DSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ--PLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTS 164 (997)
Q Consensus 88 ~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~--~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 164 (997)
.+.|....+-+....+.-+.+|+.++++...... .... .+-..+|+.++..+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~------------------------- 213 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP------------------------- 213 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-------------------------
Confidence 5678888888888854444468899999884433 1111 12233444444221
Q ss_pred ccchhhhhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-
Q 043572 165 TGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG- 240 (997)
Q Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg- 240 (997)
++.+.+..+..+.|.+|....+ ...++.+ .....+.+++|. ++.|+-|
T Consensus 214 ---------------------------d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 214 ---------------------------DGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred ---------------------------CCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEec
Confidence 2334455667777888888333 2222333 234567888887 4556666
Q ss_pred ECCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCcc--ccccccCCCC--CeEEEeC
Q 043572 241 TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPV--GGSLVFRKSP--DAVGELS 314 (997)
Q Consensus 241 ~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~--r~~i~w~~~P--~~i~~~~ 314 (997)
......+.|+.+|+....+..-+.+ -....++.++.+|++ +|++..+.|..+... -..+.+...| ...+...
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS 343 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC
Confidence 6678999999988776666543321 123445545566665 577888888765442 2355565555 4444444
Q ss_pred c---EEEEEECC-eEEEEecCCCceEEEEec
Q 043572 315 M---YVVVLRGG-KMELYHKKSGICVQAVTF 341 (997)
Q Consensus 315 P---Yll~~~~~-~ieI~~~~~~~lvQ~i~~ 341 (997)
| |+++.+.+ .+-+.++..+..+++..-
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 4 88887765 899999998877766643
|
|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.14 Score=47.25 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC
Q 043572 770 QERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED 824 (997)
Q Consensus 770 r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D 824 (997)
...+..||+..+..+++.+-..+...+.+.|.+.+|..-|+|++||+++. ++.+
T Consensus 14 ~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~-~l~~ 67 (108)
T PF10366_consen 14 PSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLK-KLAD 67 (108)
T ss_pred HHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHH-HHhc
Confidence 46788999999999999999999999999999999999999999999998 4443
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised. |
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.073 Score=62.54 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=45.8
Q ss_pred CeEEEEeC----CeEEEEccCCCcccc-ccccCCCCCeEEEeCcEEEEEECCeEEEEecCC
Q 043572 277 QKVLLLVD----NVGVFVDAHGQPVGG-SLVFRKSPDAVGELSMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 277 ~e~Ll~~~----~~g~fv~~~G~~~r~-~i~w~~~P~~i~~~~PYll~~~~~~ieI~~~~~ 332 (997)
..|++.++ .++.|++..|..+|- .+.|+ .|.++++..||.|++.-+++++.-+.-
T Consensus 1050 qrfll~sddt~lh~rkyn~trd~fs~~akl~vp-ePlsFies~P~gfifa~dtfyyv~ldh 1109 (1265)
T KOG0976|consen 1050 QRFLLESDDTFLHFRKYNDTRDRFSRTAKLKVP-EPLSFIESEPYGFIFAFDTFYYVELDH 1109 (1265)
T ss_pred cchhhhhhhhHHHHhhhcccchhhhhcccccCC-CchhhhhcCcceEEEecceEEEEeecc
Confidence 35666554 589999999998886 79999 999999999999999998888876543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=6.5 Score=42.32 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=105.1
Q ss_pred eEEEeecccCcEEEEecCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhh
Q 043572 92 ESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLL 170 (997)
Q Consensus 92 ~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 170 (997)
..+..-+-...+.|...||.|.+|++.++.+...+ .-++.++++|...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~------------------------------- 75 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR------------------------------- 75 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-------------------------------
Confidence 34444455666666667999999999998754322 3355667777532
Q ss_pred hhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECC--cEE
Q 043572 171 QKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVN--GYS 246 (997)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~--~y~ 246 (997)
++...+......++.+|....+. .++++-++.+|....|.. ...||++.. .=.
T Consensus 76 ---------------------dgr~LltsS~D~si~lwDl~~gs--~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 76 ---------------------DGRKLLTSSRDWSIKLWDLLKGS--PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ---------------------CCCEeeeecCCceeEEEeccCCC--ceeEEEccCccceeeeccccCCeEEEEEecCCcE
Confidence 12233444556677787776654 667888899998888884 457877543 334
Q ss_pred EEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccCCCccc--cccccCCCCCeEEEeCcEEEEE-ECC
Q 043572 247 LFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAHGQPVG--GSLVFRKSPDAVGELSMYVVVL-RGG 323 (997)
Q Consensus 247 lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~G~~~r--~~i~w~~~P~~i~~~~PYll~~-~~~ 323 (997)
++++.+ .+..++|.++ +|+..- .--.+... .-||++- ..+
T Consensus 133 vi~~s~-~~h~~Lp~d~-----------------------------d~dln~sas~~~fdr~-------g~yIitGtsKG 175 (405)
T KOG1273|consen 133 VIDFSD-PKHSVLPKDD-----------------------------DGDLNSSASHGVFDRR-------GKYIITGTSKG 175 (405)
T ss_pred EEEecC-CceeeccCCC-----------------------------ccccccccccccccCC-------CCEEEEecCcc
Confidence 555433 2222333321 111110 00011111 2277755 467
Q ss_pred eEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 324 KMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 324 ~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
.+-|++.+|.++|....+... .+-+.+++. .|..+++.+..-|.+-..
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~----~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSR----KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEec----cCcEEEEecCCceEEEEe
Confidence 899999998888766655442 111223332 345555655555555443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=7.6 Score=41.77 Aligned_cols=206 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred eeeeEEe----ecCCeEEEEcCCceEEEEEeCCCCCCC-CCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEE
Q 043572 32 LSISPIS----DCQVLIYIGTQSGSLILLSLDPTAATT-LHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLL 105 (997)
Q Consensus 32 ~~I~ci~----~~~~~l~iGT~~G~ll~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv 105 (997)
..|--|+ -||+-|...+.|+.+-.|+..+.+... ++ . =+.++. +.+ +++.|..|..-|..- ..|+
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~-~----Wv~~tt-l~D---srssV~DV~FaP~hlGLklA 130 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR-R----WVRRTT-LVD---SRSSVTDVKFAPKHLGLKLA 130 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccc-e----eEEEEE-eec---CCcceeEEEecchhcceEEE
Confidence 3555555 268899999999999999887554321 00 0 001111 121 778999999998854 2333
Q ss_pred -EecCCeEEEeecCcccccc---------ccccccc---eEEEEeecccCCccccccccccccccccccCCcccchhhhh
Q 043572 106 -LFCDQCLFLTDSLLTQPLK---------KLGFLKG---ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQK 172 (997)
Q Consensus 106 -~l~d~~l~~~~l~~l~~~~---------~~~~~kg---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 172 (997)
+-+||+|++|..++---+. .+....| -.+||+.+.. |.
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~---------------------sr-------- 181 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP---------------------SR-------- 181 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc---------------------cc--------
Confidence 2458999999987632111 1111111 1233333210 00
Q ss_pred ccCccccCCccchhcccccCCceEEEEEECc------eEEEEEEeCC--eEEEEEeEe-cCCcceEEEEeC------CEE
Q 043572 173 FGSGIKANGVKVKEEEQHCRGDNVFAVIIGK------RLVLIELVNG--SFVILKEIQ-CMDGVKTMVWLN------DSI 237 (997)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kk------ki~i~~~~~~--~~~~~kei~-~~~~~~~l~~~~------~~l 237 (997)
-....|+|+... ++.||++..+ ++.++-++. .+++|+.++|.- ..|
T Consensus 182 -------------------~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 182 -------------------MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred -------------------ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 012346777666 8999999865 566666654 456789999983 238
Q ss_pred EEEECCcEEEEEecCCcceeeecCC-----CCCCCC--ceEEcCC-CCeE-EEEeCCeEEEEccCCC
Q 043572 238 IVGTVNGYSLFSCVTGQSGVIFTLP-----DVSCPP--MLKLLSK-EQKV-LLLVDNVGVFVDAHGQ 295 (997)
Q Consensus 238 ~vg~~~~y~lidl~~g~~~~l~~~~-----~~~~~p--~i~~~~~-~~e~-Ll~~~~~g~fv~~~G~ 295 (997)
.||++.+..|+++.. ...+++.-. ...--| .+..+++ +.|+ -++.|-+|..+...|+
T Consensus 243 AvA~kDgv~I~~v~~-~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 243 AVATKDGVRIFKVKV-ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred EEeecCcEEEEEEee-ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 999999999999863 222222111 111111 1333432 2243 3667778888877765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=17 Score=42.85 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=132.1
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|+.. .|+.+.-++.+|.+..+........ ...... -....|..+..-|+...++-+-.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~--------~~~~l~-------~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSN--------LLRELS-------GHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccch--------hhcccc-------ccccceeeeEECCCCcEEEEecC
Confidence 456777554 3667777788888777666322200 000001 15668999999999884554444
Q ss_pred CCeEEEeecCccccccccccccce----EEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGI----SVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
|++|++|++.. +...+..++|. +.++.++
T Consensus 224 D~tiriwd~~~--~~~~~~~l~gH~~~v~~~~f~p--------------------------------------------- 256 (456)
T KOG0266|consen 224 DKTLRIWDLKD--DGRNLKTLKGHSTYVTSVAFSP--------------------------------------------- 256 (456)
T ss_pred CceEEEeeccC--CCeEEEEecCCCCceEEEEecC---------------------------------------------
Confidence 77999999832 21223334442 2222211
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcce--ee
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSG--VI 258 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~--~l 258 (997)
.+...+.......|.++....+.... -+. ..+.+.++++.. +.|+.|. .....+.|+.+|... ..
T Consensus 257 -------~g~~i~Sgs~D~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 257 -------DGNLLVSGSDDGTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred -------CCCEEEEecCCCcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 12223333455567888777643332 222 234677777774 3466664 567889999988743 33
Q ss_pred ecCCCCCCCC-ceEEcCCCCeEEEE-e-CCeEEEEccC-CCccccccccCCCCCeE--------EEeCcEEEEEE-CCeE
Q 043572 259 FTLPDVSCPP-MLKLLSKEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSPDAV--------GELSMYVVVLR-GGKM 325 (997)
Q Consensus 259 ~~~~~~~~~p-~i~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P~~i--------~~~~PYll~~~-~~~i 325 (997)
+.-..... | ..+.+..++.++++ + |++.-+.|.. |...+ .|...+..+ .-...|++.-. +..|
T Consensus 328 ~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 328 LSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred ccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCccee---eecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 33222222 3 23444445566655 4 4477777765 44332 222222211 12245666544 6789
Q ss_pred EEEecCCCceEEEEecC
Q 043572 326 ELYHKKSGICVQAVTFG 342 (997)
Q Consensus 326 eI~~~~~~~lvQ~i~~~ 342 (997)
.+.++.++..+|.+...
T Consensus 404 ~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGH 420 (456)
T ss_pred EEEeCCccchhhhhcCC
Confidence 99999999999988765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=19 Score=44.38 Aligned_cols=228 Identities=13% Similarity=0.054 Sum_probs=127.0
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
..--|.+..|++|+...++|.+.++....+... .+++. ++..+|.-|..- .++++++-.+++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------------P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~t 77 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------------PETID---ISGELVSSIACY--SNHFLTGSEQNT 77 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------------Cchhh---ccCceeEEEeec--ccceEEeeccce
Confidence 445688888999999999999998776544210 01111 133456666654 557888777889
Q ss_pred EEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 112 LFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
+.+|..|+.++-..+.+ +=.+...+++
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~r~~~v~---------------------------------------------------- 105 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPIRDLAVS---------------------------------------------------- 105 (933)
T ss_pred EEEeeCCCCCccceeeeeeccceEEEEe----------------------------------------------------
Confidence 99999998765432211 1111222211
Q ss_pred cCCceEEEEEECce-EEEEEEeCC-eEEEEEeEecCCcceEEEEeC--CEEEEE-ECCcEEEEEecCCcce----eeecC
Q 043572 191 CRGDNVFAVIIGKR-LVLIELVNG-SFVILKEIQCMDGVKTMVWLN--DSIIVG-TVNGYSLFSCVTGQSG----VIFTL 261 (997)
Q Consensus 191 ~~~~~~l~Va~kkk-i~i~~~~~~-~~~~~kei~~~~~~~~l~~~~--~~l~vg-~~~~y~lidl~~g~~~----~l~~~ 261 (997)
+++ ..++.+...- |.+....+. .-+.++. ...++.++.+.. +.|.+. +.....++|+++|... .+++.
T Consensus 106 g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 106 GSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred cCC-cEEEeecCceeEEEEeccccchheeecc--cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 011 1122222221 233333332 1222232 345778888884 446666 5567999999987542 22332
Q ss_pred CCCC-CCCceEEc--CCCCeEEEE-eCCeEEEEccCCCcccccc--ccCCCCCeEEEeCc---EEEEE-ECCeEEEEecC
Q 043572 262 PDVS-CPPMLKLL--SKEQKVLLL-VDNVGVFVDAHGQPVGGSL--VFRKSPDAVGELSM---YVVVL-RGGKMELYHKK 331 (997)
Q Consensus 262 ~~~~-~~p~i~~~--~~~~e~Ll~-~~~~g~fv~~~G~~~r~~i--~w~~~P~~i~~~~P---Yll~~-~~~~ieI~~~~ 331 (997)
.+.. .+++..+- +++++|++. .++....++..|.-....+ ...+.-..+.-..| ||-+. .++.|-|-+++
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 2211 23332221 555788865 7888888998887554322 22222233333344 88865 47889999988
Q ss_pred C
Q 043572 332 S 332 (997)
Q Consensus 332 ~ 332 (997)
+
T Consensus 263 t 263 (933)
T KOG1274|consen 263 T 263 (933)
T ss_pred c
Confidence 5
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.59 E-value=19 Score=42.21 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=41.2
Q ss_pred cEEEEEcCCeEEEEeecCHHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhc
Q 043572 360 KLLVVATPTKVICYQKVPSEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS 439 (997)
Q Consensus 360 ~~~~v~s~~~V~~l~~~~~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~ 439 (997)
.++++-.+..|..+..-+-+-+.+..+.++++++++.+.+...--..++++ .++..+-+|-.+|..+.|++.-
T Consensus 246 ~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~----~~~~i~~fL~~~G~~e~AL~~~--- 318 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKD----QGQSIARFLEKKGYPELALQFV--- 318 (443)
T ss_dssp EEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HH----HHHHHHHHHHHTT-HHHHHHHS---
T ss_pred EEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChh----HHHHHHHHHHHCCCHHHHHhhc---
Confidence 445555677888886666677889999999999998888632211112222 2334444577778888888642
Q ss_pred CCCCcccccc
Q 043572 440 ETMQPSEVFP 449 (997)
Q Consensus 440 ~~~Dp~~l~p 449 (997)
-||..=|.
T Consensus 319 --~D~~~rFe 326 (443)
T PF04053_consen 319 --TDPDHRFE 326 (443)
T ss_dssp --S-HHHHHH
T ss_pred --CChHHHhH
Confidence 36665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.9 Score=48.13 Aligned_cols=133 Identities=18% Similarity=0.183 Sum_probs=82.9
Q ss_pred eeeeEEeecCCeEE--EEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQVLIY--IGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~~l~--iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
-.++|++.+.+-|+ .||.||.+-.|.+....+ ..+|-. ...||.-|..-+..- -|++-||
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-------------~a~Fpg----ht~~vk~i~FsENGY-~Lat~ad 409 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-------------VAKFPG----HTGPVKAISFSENGY-WLATAAD 409 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-------------cccCCC----CCCceeEEEeccCce-EEEEEec
Confidence 46899998855444 468999999999876542 123332 456899999766665 5554776
Q ss_pred C-eEEEeecCccccccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 Q-CLFLTDSLLTQPLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~-~l~~~~l~~l~~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
. .|.+|+|--+.-.++ +..-+++.....|.
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~----------------------------------------------- 442 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ----------------------------------------------- 442 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcC-----------------------------------------------
Confidence 5 599999865443222 22233444444332
Q ss_pred cccccCCceEEEEEECceEEEEEEeC--CeEEEEEeEecCCcceEEEEeCCE
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVN--GSFVILKEIQCMDGVKTMVWLNDS 236 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~--~~~~~~kei~~~~~~~~l~~~~~~ 236 (997)
++ ..+.++ ...+.+|.... ..|..++++.....+....|+|+.
T Consensus 443 -----SG-t~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 443 -----SG-TYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred -----CC-CeEEee-cceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 11 123333 78888887763 368888887766656566677654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.028 Score=60.76 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=39.2
Q ss_pred CCcCccccCccCCc--cEEEcCCCeEEEecccc----ccCcccCCCCCCCCCccccCC
Q 043572 940 ESLCDSCHARLGTK--LFAMYPDDTIVCYKCYR----RQGESTSITGRDFKKDVLIKP 991 (997)
Q Consensus 940 ~~~C~vC~k~l~~~--~f~v~p~g~~~H~~C~~----~~~~~~~~t~~~f~~~~~~~~ 991 (997)
+--|..||..+|.. ..--.||.|+||..|+. ++....||.|+-.+....+||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpg 422 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPG 422 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCC
Confidence 34799999999964 36678999999999999 555677998885554433333
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=5.1 Score=51.03 Aligned_cols=73 Identities=14% Similarity=-0.055 Sum_probs=48.7
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|++++.. ++.|+.|+.+|.+..|.+..... . ..+ + -+..+|..+..-|..+.+|+ +-
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-----------~--~~~-~---~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----------V--TEM-K---EHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-----------E--EEe-c---CCCCCEEEEEEcCCCCCEEEEEc
Confidence 456676642 46799999999999998864321 0 111 1 15668999998875443444 34
Q ss_pred cCCeEEEeecCccc
Q 043572 108 CDQCLFLTDSLLTQ 121 (997)
Q Consensus 108 ~d~~l~~~~l~~l~ 121 (997)
.|+++.+|++..-.
T Consensus 596 ~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 596 DDGSVKLWSINQGV 609 (793)
T ss_pred CCCEEEEEECCCCc
Confidence 47899999987543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.5 Score=49.73 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=55.9
Q ss_pred ccceeeeeEEe---ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEE
Q 043572 28 PIRSLSISPIS---DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVL 104 (997)
Q Consensus 28 ~~~~~~I~ci~---~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lL 104 (997)
+.+..-|+++. .|=|.+.+|.++|.+..+++....- ...|-. ....|+-|.--|..+.+.
T Consensus 156 ~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~~----~~s~IT~ieqsPaLDVVa 218 (910)
T KOG1539|consen 156 KVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQE----FFSRITAIEQSPALDVVA 218 (910)
T ss_pred eccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEecc----cccceeEeccCCcceEEE
Confidence 34443366654 7889999999999999999986441 011111 336799999999999888
Q ss_pred EEecCCeEEEeecCc
Q 043572 105 LLFCDQCLFLTDSLL 119 (997)
Q Consensus 105 v~l~d~~l~~~~l~~ 119 (997)
|.+.+|+|.+|++..
T Consensus 219 iG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKF 233 (910)
T ss_pred EeccCceEEEEEccc
Confidence 888999999999754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=3.4 Score=44.26 Aligned_cols=253 Identities=15% Similarity=0.084 Sum_probs=134.6
Q ss_pred CccceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccc-cccccccccCCCcceEEEeecccCcE
Q 043572 27 SPIRSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQH-VSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 27 ~~~~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
++-.....+|+-. .|+.|.-|+-||.+-.++.....- .-. ...|. ..|. ....+|-.|..-.+.+++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl-----rKD-LkYQAqd~fM----Mmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL-----RKD-LKYQAQDNFM----MMDDAVLCISFSRDSEML 278 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchh-----hhh-hhhhhhccee----ecccceEEEeecccHHHh
Confidence 3344567778664 477899999999988887764431 100 00011 1111 245689999888888855
Q ss_pred EEEecCCeEEEeecCccccccc--cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKK--LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~--~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
.-.--||++.+|.+.+-+-+-. -.-+|||++.....+.+ . + -++ +
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S---q-------i--------LS~---------------s 325 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS---Q-------I--------LSA---------------S 325 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc---h-------h--------hcc---------------c
Confidence 5544589999999866332221 13478887766432110 0 0 000 0
Q ss_pred ccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC-CcceEEEEe--CCEEEEE-ECCcEEEEEecCCccee
Q 043572 182 VKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM-DGVKTMVWL--NDSIIVG-TVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~-~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g~~~~ 257 (997)
-...+.+--.+.+ +.+||+--. .-+....|. |+.|+-+ +.....+.+..+++...
T Consensus 326 -------------------fD~tvRiHGlKSG--K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 326 -------------------FDQTVRIHGLKSG--KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred -------------------ccceEEEeccccc--hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 0111112112221 122332211 112233333 4555555 44567778877776655
Q ss_pred eecCCCCCC-CCceEEcCCC-CeEEEE-eCCeEEEEccCCCcccc-c-cccCCCCCeEEEeCc---EEEEEEC-CeEEEE
Q 043572 258 IFTLPDVSC-PPMLKLLSKE-QKVLLL-VDNVGVFVDAHGQPVGG-S-LVFRKSPDAVGELSM---YVVVLRG-GKMELY 328 (997)
Q Consensus 258 l~~~~~~~~-~p~i~~~~~~-~e~Ll~-~~~~g~fv~~~G~~~r~-~-i~w~~~P~~i~~~~P---Yll~~~~-~~ieI~ 328 (997)
-|.+.+... -..+..+|.+ +.|++| ..+..+++|.+|..+|. + =.-++--.--+...| ++.++.+ ..+.-+
T Consensus 385 Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 385 TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 565443221 1234455533 568888 45677778889998774 1 111111111233333 6766664 457778
Q ss_pred ecCCCceEEEEecCC
Q 043572 329 HKKSGICVQAVTFGG 343 (997)
Q Consensus 329 ~~~~~~lvQ~i~~~~ 343 (997)
++.+|.+-.++++..
T Consensus 465 ~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHE 479 (508)
T ss_pred EeecCceeeeeeccc
Confidence 888888888877644
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=19 Score=40.34 Aligned_cols=139 Identities=15% Similarity=0.214 Sum_probs=73.0
Q ss_pred CceEEEEEEeCC-eEEEE----EeEecCCcceEEEEeCC--EEEEEEC--CcEEEEEecC--CcceeeecCC---C--CC
Q 043572 202 GKRLVLIELVNG-SFVIL----KEIQCMDGVKTMVWLND--SIIVGTV--NGYSLFSCVT--GQSGVIFTLP---D--VS 265 (997)
Q Consensus 202 kkki~i~~~~~~-~~~~~----kei~~~~~~~~l~~~~~--~l~vg~~--~~y~lidl~~--g~~~~l~~~~---~--~~ 265 (997)
..+|.+|.+..+ .+... ..+.....|..+.|..+ .++|+.. +.-.++|++. |....+-.++ . .+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 477899988653 23211 11223456788888754 6888864 6788888873 3322221111 1 11
Q ss_pred -CCCceEEcCCCCeEEEEeC---C-eEEE-EccCCCccc--cccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecC--
Q 043572 266 -CPPMLKLLSKEQKVLLLVD---N-VGVF-VDAHGQPVG--GSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKK-- 331 (997)
Q Consensus 266 -~~p~i~~~~~~~e~Ll~~~---~-~g~f-v~~~G~~~r--~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~-- 331 (997)
..|.-..+..++.+|.+.+ + ..+| ++.+|.... +.+.....|..+.+. ..||++.. .+.|.|+.+.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 1122122333456666543 2 3443 344443211 233334467777765 56888765 5789998774
Q ss_pred CCce--EEEEe
Q 043572 332 SGIC--VQAVT 340 (997)
Q Consensus 332 ~~~l--vQ~i~ 340 (997)
++.+ ++++.
T Consensus 307 ~g~l~~~~~~~ 317 (330)
T PRK11028 307 TGLLTELGRYA 317 (330)
T ss_pred CCcEEEccccc
Confidence 4544 45444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=14 Score=41.46 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=83.1
Q ss_pred EEEEEE--CceEEEEEEeC-CeEEEEEeEecCCcceEEEEe--CCEEEEEE--CCcEEEEEecC-CcceeeecCCCCCCC
Q 043572 196 VFAVII--GKRLVLIELVN-GSFVILKEIQCMDGVKTMVWL--NDSIIVGT--VNGYSLFSCVT-GQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~~-~~~~~~kei~~~~~~~~l~~~--~~~l~vg~--~~~y~lidl~~-g~~~~l~~~~~~~~~ 267 (997)
.++|+. .+.|.+|.+.. +.+.....+..++.|..+.+. +..++++. .+...++|+++ |..............
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~ 127 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG 127 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc
Confidence 345543 46678888863 356666667677778888888 44588775 45678888863 322222111111123
Q ss_pred CceEEcCCCCeEEEEe---CCeEEEEcc--CCCccc---c--ccccCCCCCeEEEeCc--EEEEEE--CCeEEEEecC--
Q 043572 268 PMLKLLSKEQKVLLLV---DNVGVFVDA--HGQPVG---G--SLVFRKSPDAVGELSM--YVVVLR--GGKMELYHKK-- 331 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~---~~~g~fv~~--~G~~~r---~--~i~w~~~P~~i~~~~P--Yll~~~--~~~ieI~~~~-- 331 (997)
|....+..++.++++. ++....++. .|.... . ++.=...|..++++.- |+++.. .+.|.++.+.
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 4444454444566442 244444543 344321 1 1222456888888754 888776 5889999986
Q ss_pred CC--ceEEEEe
Q 043572 332 SG--ICVQAVT 340 (997)
Q Consensus 332 ~~--~lvQ~i~ 340 (997)
++ .++|++.
T Consensus 208 ~~~~~~~~~~~ 218 (330)
T PRK11028 208 HGEIECVQTLD 218 (330)
T ss_pred CCCEEEEEEEe
Confidence 33 4577775
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.3 Score=44.22 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.++|+-|..+-.|..|.+..... ++..+-+ +...|....-+-+.+.+|-+--|++|++|+.-+-
T Consensus 112 s~~lltgg~ekllrvfdln~p~A------------pp~E~~g----htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKA------------PPKEISG----HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred chhhhccchHHHhhhhhccCCCC------------CchhhcC----CCCcceeEEEeccCceEEeeccCCceEEEEeccC
Confidence 45799999999888887765442 1233322 4557888888877777777555789999996542
Q ss_pred ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE
Q 043572 121 QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI 200 (997)
Q Consensus 121 ~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va 200 (997)
.- |+.+-.+.. |+|-+ +..++ ..+.++
T Consensus 176 t~---------v~sL~~~s~--------------VtSlE-----------------------------vs~dG-~ilTia 202 (334)
T KOG0278|consen 176 TE---------VQSLEFNSP--------------VTSLE-----------------------------VSQDG-RILTIA 202 (334)
T ss_pred cE---------EEEEecCCC--------------Cccee-----------------------------eccCC-CEEEEe
Confidence 11 222221100 00000 00011 346667
Q ss_pred ECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE-EEEEECC--cEEEEEecCCcceeee
Q 043572 201 IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS-IIVGTVN--GYSLFSCVTGQSGVIF 259 (997)
Q Consensus 201 ~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~-l~vg~~~--~y~lidl~~g~~~~l~ 259 (997)
-...|.++.. +.|..+|++.+|-.|.+.+..-+. ++|+-.. -.+.+|-+||.-+..+
T Consensus 203 ~gssV~Fwda--ksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 203 YGSSVKFWDA--KSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cCceeEEecc--ccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 7777776554 459999999999999887776443 5555444 3455888899877776
|
|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.07 Score=41.62 Aligned_cols=35 Identities=14% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCcCccccCccC-CccEEEcC-CCeEEEeccccccC
Q 043572 939 DESLCDSCHARLG-TKLFAMYP-DDTIVCYKCYRRQG 973 (997)
Q Consensus 939 ~~~~C~vC~k~l~-~~~f~v~p-~g~~~H~~C~~~~~ 973 (997)
.+.+|.+||++|. ...+++-| ||..+|..|.....
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC
Confidence 5689999999995 35688888 79999999998753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.33 E-value=14 Score=46.87 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHHHHHHc---CChhHHHHHHhhcC--ChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHH
Q 043572 574 VEELETLLDES---GHLRTLAFLYASKG--MSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASK 648 (997)
Q Consensus 574 ~e~~~~~L~~~---~~~~~L~~ly~~~~--~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~ 648 (997)
.+.+...|..+ .+...++..|.+.+ ..+.||+...++..... + ..+.+.++
T Consensus 777 c~~vr~~l~~~~~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~-----~-------------------~~ad~al~ 832 (1265)
T KOG1920|consen 777 CDAVRNALERRAPDKFNLFILTSYVKSNPPEIEEALQKIKELQLAQV-----A-------------------VSADEALK 832 (1265)
T ss_pred HHHHHHHHhhcCcchhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc-----c-------------------hhHHHHHH
Confidence 34455555443 23456677777777 77888887776653110 0 01234556
Q ss_pred hcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 043572 649 ILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYAL 728 (997)
Q Consensus 649 ~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~ 728 (997)
+|..+.|.+-+++++.=+.+ -+.++.+-. ..+-||...+++|++.. .+...|-.+-|.
T Consensus 833 hll~Lvdvn~lfn~ALgtYD--l~Lal~VAq----~SqkDPkEyLP~L~el~-~m~~~~rkF~ID--------------- 890 (1265)
T KOG1920|consen 833 HLLFLVDVNELFNSALGTYD--LDLALLVAQ----KSQKDPKEYLPFLNELK-KMETLLRKFKID--------------- 890 (1265)
T ss_pred HHHhhccHHHHHHhhhcccc--hHHHHHHHH----HhccChHHHHHHHHHHh-hchhhhhheeHH---------------
Confidence 66666666666666544332 233333322 24678888888886543 122223233222
Q ss_pred HHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCCCC---------ChHHHHhh-------c
Q 043572 729 SLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLY---------DPEDVLDL-------I 792 (997)
Q Consensus 729 lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~~y---------d~~~~L~~-------~ 792 (997)
-|++.|..++..-..-. ..+....++|++....| +.++-... |
T Consensus 891 ~~L~ry~~AL~hLs~~~---------------------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL 949 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSECG---------------------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHL 949 (1265)
T ss_pred HHHHHHHHHHHHHHHcC---------------------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHH
Confidence 13333333332210000 01223344444444333 33332222 3
Q ss_pred cCCCchHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhc
Q 043572 793 EGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEI 835 (997)
Q Consensus 793 ~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~ 835 (997)
....++++.++.|.+.|++++||.-+. .-+|+..|...+.+.
T Consensus 950 ~~~~~~~~Aal~Ye~~GklekAl~a~~-~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKLEKALKAYK-ECGDWREALSLAAQL 991 (1265)
T ss_pred HHhccccHHHHHHHHhccHHHHHHHHH-HhccHHHHHHHHHhh
Confidence 344567889999999999999999999 679999999888764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=17 Score=38.10 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=59.7
Q ss_pred cccccCCCCCC--Cccce--eeeeEE--eecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 16 SQFDLSHYSRS--SPIRS--LSISPI--SDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 16 ~~~~~~~~~~~--~~~~~--~~I~ci--~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
-.||+.+.+|- .+++. ..|+++ .+.|+.+|-|++||++-.+.+.... .| +..+ +++
T Consensus 64 RlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~------------~q--R~~~----~~s 125 (311)
T KOG0315|consen 64 RLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS------------CQ--RNYQ----HNS 125 (311)
T ss_pred EEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc------------cc--hhcc----CCC
Confidence 36887666662 22222 345554 4568899999999999998887522 11 1111 568
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
||+.+.+=|....|+++--+|.|++|+|-+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 999999889888777755567999999976
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.3 Score=46.60 Aligned_cols=210 Identities=11% Similarity=0.133 Sum_probs=125.5
Q ss_pred cccccccCCCCCCCcc---ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc
Q 043572 14 PLSQFDLSHYSRSSPI---RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP 90 (997)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (997)
.-.++|......+..+ ....|-|++..+..+-.|+.+|.++++.+.-..... . .+. -.+..
T Consensus 240 ~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~----------~---~~~---~H~qe 303 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVV----------S---TLQ---GHRQE 303 (484)
T ss_pred eEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhh----------h---hhh---cccce
Confidence 3456674433333333 346889999888899999999999999987654311 1 111 25667
Q ss_pred ceEEEeecccCcEEEEecCCeEEEeecCccccccccccccc-eEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 91 VESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 91 I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
|--+..-++...+.-...|+.+++|+....+|...+..-++ |..++..|...
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------------- 356 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------------- 356 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc---------------------------
Confidence 88899889888666555678999999977666655555444 66677666431
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEEC---ceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCE--EEEEEC--
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG---KRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDS--IIVGTV-- 242 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k---kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~--l~vg~~-- 242 (997)
-.|+++.+ +.|.++.... -..++.+.....|.+|.|.... ||.+..
T Consensus 357 -------------------------~lLAsGGGs~D~~i~fwn~~~--g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 357 -------------------------GLLATGGGSADRCIKFWNTNT--GARIDSVDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred -------------------------CceEEcCCCcccEEEEEEcCC--CcEecccccCCceeeEEEcCCCCEEEEecCCC
Confidence 01333322 3344444433 3566777778899999999765 777632
Q ss_pred -CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCC
Q 043572 243 -NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQ 295 (997)
Q Consensus 243 -~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~ 295 (997)
+...+.+..+- ..+-...++..+-+-....++++.++. .|+..-|-+..+.
T Consensus 410 ~n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 35566665431 111111122222222223334455443 5667777776553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=14 Score=42.01 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=79.3
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCC-cceEEEEe--CC-EEEEEECC-cEEEEEecCCcceeeecCCCCCCCCc
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMD-GVKTMVWL--ND-SIIVGTVN-GYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~-~~~~l~~~--~~-~l~vg~~~-~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
..|+....+.+.||++++..=.+++.+.+.+ ++.+..|. |. .||.+..+ -|+.+|+.++..+++-++.+.. ++.
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~ 305 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKS 305 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cch
Confidence 3455567888999999876333555555544 55676666 44 58888665 5677999999988886665422 344
Q ss_pred eEEc--CCCCeEEEEeCCeEEEEcc---CCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 270 LKLL--SKEQKVLLLVDNVGVFVDA---HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~fv~~---~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+..+ +..+.||+.-++.|.+.=. .|.-. +++..++....+.+. .--|++.. .+.|-|.++.....+.+..-
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhh-heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 4443 2233466655544433211 12111 122223333333332 22344443 45666777766544444433
Q ss_pred CC
Q 043572 342 GG 343 (997)
Q Consensus 342 ~~ 343 (997)
.+
T Consensus 385 ~G 386 (514)
T KOG2055|consen 385 DG 386 (514)
T ss_pred cC
Confidence 33
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.3 Score=45.50 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=64.7
Q ss_pred cceeeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 29 IRSLSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 29 ~~~~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
+-+..+.||....+ -|.-|+.||.+-.+.+.... ...+|.+- ..+.|+.+..-.+...+|-+
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-------------ClRrFdrA---HtkGvt~l~FSrD~SqiLS~ 324 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-------------CLRRFDRA---HTKGVTCLSFSRDNSQILSA 324 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch-------------HHHHhhhh---hccCeeEEEEccCcchhhcc
Confidence 45568889987655 48999999999999998653 12344442 56789999988888877774
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEe
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAK 137 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~ 137 (997)
--|.+++++.|.+-. -+...||.+.|.-
T Consensus 325 sfD~tvRiHGlKSGK---~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSGK---CLKEFRGHSSYVN 352 (508)
T ss_pred cccceEEEeccccch---hHHHhcCcccccc
Confidence 557799998876532 2456788777763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.63 E-value=18 Score=43.59 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCccceeee--eEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 26 SSPIRSLSI--SPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 26 ~~~~~~~~I--~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
+.++++.-| .|+.-+++++.+||.+|.|..|.+-..+. ....+ -+...|=.|.+.|+....
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l-----------~Eti~------AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL-----------VETIR------AHDGAIWSISLSPDNKGF 469 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh-----------hhhhh------ccccceeeeeecCCCCce
Confidence 344554433 34556788999999999999999875432 11111 145578899999998877
Q ss_pred EEEecCCeEEEeec
Q 043572 104 LLLFCDQCLFLTDS 117 (997)
Q Consensus 104 Lv~l~d~~l~~~~l 117 (997)
+-.-+|++|.+|+.
T Consensus 470 vT~saDktVkfWdf 483 (888)
T KOG0306|consen 470 VTGSADKTVKFWDF 483 (888)
T ss_pred EEecCCcEEEEEeE
Confidence 77678999999974
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=91.63 E-value=34 Score=40.35 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEEEEeCCeEEE--EEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEE-cCCCCe
Q 043572 205 LVLIELVNGSFVI--LKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKL-LSKEQK 278 (997)
Q Consensus 205 i~i~~~~~~~~~~--~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~-~~~~~e 278 (997)
-.+|+...++++. +..+.++..|.+.++. .+.+++|+. ....++|..++.+.-. ...+.|.... .+++..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCcE
Confidence 3567887776654 3567788888888877 356999965 5788999876643321 1123444333 344445
Q ss_pred EEEEeC
Q 043572 279 VLLLVD 284 (997)
Q Consensus 279 ~Ll~~~ 284 (997)
|++|.+
T Consensus 314 ~~V~s~ 319 (545)
T PF11768_consen 314 FVVGSE 319 (545)
T ss_pred EEEEcC
Confidence 556644
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.60 E-value=31 Score=39.90 Aligned_cols=229 Identities=13% Similarity=0.138 Sum_probs=123.7
Q ss_pred ceeeeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
.+-.|.+++.-.. ++.-|++|+.+-.|+ . ++ -+|..+..-+.+=|..+..-|+.+++.-+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffe-G--PP--------------FKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFE-G--PP--------------FKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEee-C--CC--------------eeeeecccccccceeeEEECCCCCeEEEe
Confidence 3346666664333 577788888654332 2 21 12222111244568999999999977777
Q ss_pred ecCCeEEEeecCccccccccc---cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG---FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~---~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-+||++++|+-.+-+.+..+. .-|| +.|++.+. |++
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWs---PDs------------------------------------- 247 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWS---PDS------------------------------------- 247 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEEC---CCC-------------------------------------
Confidence 789999999987644332222 2233 34555431 111
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc----eEEEEeCCEEEEEECC-cEEEEEecCCc----
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV----KTMVWLNDSIIVGTVN-GYSLFSCVTGQ---- 254 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~----~~l~~~~~~l~vg~~~-~y~lidl~~g~---- 254 (997)
...+.+...|.+.|+....+ ...+++.+++.+ ...-|-++.|+....+ ...++|..++.
T Consensus 248 ----------~~~~T~SaDkt~KIWdVs~~--slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 248 ----------TQFLTVSADKTIKIWDVSTN--SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred ----------ceEEEecCCceEEEEEeecc--ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 12334445555556555543 333444444433 2333555543333333 23334443332
Q ss_pred --------------------------------------ceeeecCCCCCCCCceEEcC--CCCe-EEEEeCCeEEEEccC
Q 043572 255 --------------------------------------SGVIFTLPDVSCPPMLKLLS--KEQK-VLLLVDNVGVFVDAH 293 (997)
Q Consensus 255 --------------------------------------~~~l~~~~~~~~~p~i~~~~--~~~e-~Ll~~~~~g~fv~~~ 293 (997)
.-++++.+ ....|+.+. +.++ |-+..|++.-.++..
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~---h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG---HTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc---ccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 22222111 122444442 2134 445578888777765
Q ss_pred CCc-cc-cccccCCCCCeEEEeCc--EEEEEECCeEEEEecC
Q 043572 294 GQP-VG-GSLVFRKSPDAVGELSM--YVVVLRGGKMELYHKK 331 (997)
Q Consensus 294 G~~-~r-~~i~w~~~P~~i~~~~P--Yll~~~~~~ieI~~~~ 331 (997)
|+. +. ..+.....|..+++..| ++++.+.+.|.|.+-.
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 543 22 25788899999999999 8888888777776633
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.3 Score=45.86 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-E
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-L 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~ 106 (997)
--..+.|+++. |..|+-||..|.||.+.+..+.- ..++. -+=.+|+.|...-+.. .++ .
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------------L~v~~---aHYQ~ITcL~fs~dgs-~iiTg 141 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------------LNVLS---AHYQSITCLKFSDDGS-HIITG 141 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH--------------HHHHH---hhccceeEEEEeCCCc-EEEec
Confidence 33567888864 66899999999999999875431 11110 1345799988777666 555 3
Q ss_pred ecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
--||.|++|.+-.+........++..+.|.-+-.. +.|- +|...|+
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls-------------ITDl-----------------~ig~Gg~---- 187 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS-------------ITDL-----------------QIGSGGT---- 187 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcce-------------eEEE-----------------EecCCCc----
Confidence 33789999999776432222223333333321100 0000 0000111
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEec
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCV 251 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~ 251 (997)
..+.+-+...+.+.+|.++.+ ..+..+.+|..+.+++.. +..+++|+.. .+.++++.
T Consensus 188 ------~~rl~TaS~D~t~k~wdlS~g--~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 188 ------NARLYTASEDRTIKLWDLSLG--VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ------cceEEEecCCceEEEEEeccc--eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 123345566777899999886 566778899999998877 3458888665 56666664
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.38 E-value=14 Score=39.74 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=54.1
Q ss_pred cceeeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 29 IRSLSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 29 ~~~~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
.....|.|.+.. +..++.|+-||.+..|.+...... ++.+ +..+|..|.-.+..+.++-.-
T Consensus 52 ~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~---------------~igt---h~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 52 KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED---------------QIGT---HDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce---------------eecc---CCCceEEEEeeccCCeEEEcc
Confidence 344567666654 458999999999999999865431 2222 677999999999999666655
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.|+++.+|+.-.
T Consensus 114 WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 114 WDKTIKFWDPRN 125 (323)
T ss_pred cCccEEEEeccc
Confidence 688999998643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=23 Score=42.15 Aligned_cols=242 Identities=10% Similarity=0.052 Sum_probs=123.5
Q ss_pred cceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 29 IRSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 29 ~~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
....-+.|++.+++.||=|..|+.|..-...+.+... -.+... +.+++ +......+++++.-.
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~--------h~~~~~------~p~~~---~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD--------HRQKNL------FPASD---RVSVAPENRLLVLWK 351 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccccCchh--------hhcccc------ccccc---eeecCccceEEEEec
Confidence 3446889999999999999999987654444432210 001111 12222 233444555777333
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+..+..|.+-+-.+.......+=+..+.-+.. +| +.. .=+|
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~------------nI--------s~~--------------aiSP----- 392 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE------------NI--------SCA--------------AISP----- 392 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCcc------------ce--------eee--------------ccCC-----
Confidence 77888888766432211111111111111100 00 000 0001
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCC------cceEEEE--eCCEEEEEEC--CcEEEEEecCCcceee
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMD------GVKTMVW--LNDSIIVGTV--NGYSLFSCVTGQSGVI 258 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~------~~~~l~~--~~~~l~vg~~--~~y~lidl~~g~~~~l 258 (997)
..-.||+.+-.+..+|++.... .+++....+ ++..+.+ .++.++++.. .+.+.+++++.+...+
T Consensus 393 ----dg~~Ia~st~~~~~iy~L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 393 ----DGNLIAISTVSRTKIYRLQPDP--NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred ----CCCEEEEeeccceEEEEeccCc--ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 1146899999999999998753 222222222 2233333 3666666654 4667778777777777
Q ss_pred ecCCCCCCCCceEEc--CCCCeEEEEeCC--eEEEEccCCCcccccc-ccCCCCCeEEE---eCcEEEEE-ECCeEEEEe
Q 043572 259 FTLPDVSCPPMLKLL--SKEQKVLLLVDN--VGVFVDAHGQPVGGSL-VFRKSPDAVGE---LSMYVVVL-RGGKMELYH 329 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~--~~~~e~Ll~~~~--~g~fv~~~G~~~r~~i-~w~~~P~~i~~---~~PYll~~-~~~~ieI~~ 329 (997)
.+.......|.|..+ .+.++++.+-+. ....+|.++...+..+ ..+..-+..++ ..+=|++. .++.+.=++
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 666554444544433 345677776443 3344677766554322 22222222222 23344433 467777777
Q ss_pred cCC
Q 043572 330 KKS 332 (997)
Q Consensus 330 ~~~ 332 (997)
++.
T Consensus 547 i~~ 549 (691)
T KOG2048|consen 547 IEA 549 (691)
T ss_pred cch
Confidence 643
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.86 E-value=34 Score=39.03 Aligned_cols=265 Identities=16% Similarity=0.109 Sum_probs=142.6
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|||++.. |..|..|..+|.+..|.....-. ..+. ..|.||..+.==...+.+|-.-.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~---------------~tl~---~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI---------------STLG---QHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhh---------------hhhh---ccCCceEEEEEcCCCCEEEeccCC
Confidence 578999976 78999999999999998876431 1111 378899999988888878877779
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
|+..+|+-..-. .+ +-|..+... ++ ...++
T Consensus 298 ~ttilwd~~~g~-------~~--q~f~~~s~~---------------------------------------~l--DVdW~ 327 (524)
T KOG0273|consen 298 GTTILWDAHTGT-------VK--QQFEFHSAP---------------------------------------AL--DVDWQ 327 (524)
T ss_pred ccEEEEeccCce-------EE--EeeeeccCC---------------------------------------cc--ceEEe
Confidence 999999853211 00 011111000 00 00000
Q ss_pred ccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEE-ECCcEEEEEecCCcc--------eee
Q 043572 190 HCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVG-TVNGYSLFSCVTGQS--------GVI 258 (997)
Q Consensus 190 ~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg-~~~~y~lidl~~g~~--------~~l 258 (997)
. .....+-.++-.|.+|++..++.....-- -..+|.+|.|.. ..|.-+ ....-.|.++..+.. .++
T Consensus 328 ~--~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 328 S--NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred c--CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 0 00112334555678888887644432211 345678888884 333333 234566666543321 222
Q ss_pred ecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCC-eEEEe--CcEEEEE-ECCeEEEEecC
Q 043572 259 FTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPD-AVGEL--SMYVVVL-RGGKMELYHKK 331 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~-~i~~~--~PYll~~-~~~~ieI~~~~ 331 (997)
+...-.+..|....... +-.|++ +|++.-..|. .|.+.- +++=...|. ++++. .-|+..- .++.|.|-+..
T Consensus 405 ~t~~wsp~g~v~~n~~~-~~~l~sas~dstV~lwdv~~gv~i~-~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNM-NLMLASASFDSTVKLWDVESGVPIH-TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eeEeecCCCCccCCCcC-CceEEEeecCCeEEEEEccCCceeE-eeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 22211122333333322 233433 5666666664 455442 332233344 44444 3476643 46889999999
Q ss_pred CCceEEEEecCCCCCCCceecccccCCC-cEEEEEcCCeEEEEe
Q 043572 332 SGICVQAVTFGGEGGGQCIATDEECGAG-KLLVVATPTKVICYQ 374 (997)
Q Consensus 332 ~~~lvQ~i~~~~~~~~~~i~~~~~~~~g-~~~~v~s~~~V~~l~ 374 (997)
++.++|+..-.+.+ +-++ ... .| ++...+|+..|.++.
T Consensus 483 ~~~l~~s~~~~~~I---fel~-Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 483 TGKLVKSYQGTGGI---FELC-WNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred chheeEeecCCCeE---EEEE-EcC-CCCEEEEEecCCCceEEE
Confidence 99999997544421 1111 111 13 344566777777664
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.14 Score=37.49 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=24.6
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|.+.+.+ ++++.|+||+|++.|..++
T Consensus 1 C~iC~~~~~~-~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB-SS-EEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcccC-cCEECCCCCchhHHHHHHH
Confidence 7899887776 7778999999999999876
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=90.52 E-value=39 Score=39.12 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=41.0
Q ss_pred CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-----ccCcEEEEecCCeEEEee
Q 043572 42 VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-----DVGKVLLLFCDQCLFLTD 116 (997)
Q Consensus 42 ~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-----~~~~lLv~l~d~~l~~~~ 116 (997)
+.|++|+.+|.|..|.-...... .. ..-+-.. -+.||-||..=. +.+.|.| |.-+.|.+|.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~---~~-------~lllE~~---l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~ 103 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQ---PE-------DLLLETQ---LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYS 103 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCC---Cc-------cEEEEEe---cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEE
Confidence 48999999999999887433210 00 0111111 356999998753 2333455 9999999999
Q ss_pred cCc
Q 043572 117 SLL 119 (997)
Q Consensus 117 l~~ 119 (997)
+..
T Consensus 104 v~~ 106 (418)
T PF14727_consen 104 VSL 106 (418)
T ss_pred EEe
Confidence 843
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.38 E-value=15 Score=38.52 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=52.5
Q ss_pred eeeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|+.-+.+ .|+.|+.+|.+..+.+.++.-.... ..+ ...+|+.+.|.|+..++..+-.-
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------------iPe---~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------------IPE---DDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------------CCC---CCcceeeEEEcCCCcEEEEecCC
Confidence 57788877655 6999999999999999877521111 111 33589999999999955553334
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
|+.++|+|..
T Consensus 189 G~cyvW~l~~ 198 (311)
T KOG0315|consen 189 GNCYVWRLLN 198 (311)
T ss_pred ccEEEEEccC
Confidence 6999999975
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.078 Score=39.73 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=28.8
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~ 981 (997)
.|++|...+. ..+.+.||||.+|..|+.... ...||.++
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~ 42 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42 (45)
T ss_pred CCCcCchhhh-CceEecCCCChhcHHHHHHHHHhCcCCCCCCC
Confidence 4999999883 456667799999999998652 33577543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.31 E-value=30 Score=37.48 Aligned_cols=238 Identities=14% Similarity=0.105 Sum_probs=125.9
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...+|++++.. |..|...++|-.|..|......- .+.+. -.|-.|+.+......+.++-+-
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--------------~~ti~---skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--------------VKTIN---SKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--------------eeEee---cccccccEEEEecCCceEEEcc
Confidence 35689998854 66788888888999999876431 22111 1233788888777777555522
Q ss_pred c--CCeEEEeecCccccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 C--DQCLFLTDSLLTQPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~--d~~l~~~~l~~l~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
. |.+|+..+|..=.=+-- .+-.+-|+.+++.|.
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-------------------------------------------- 111 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-------------------------------------------- 111 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC--------------------------------------------
Confidence 2 45777766543000000 001122333333221
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCC-eEEEEEeEecCCcceEEEEeCC--EEEEEECC-cEEEEEecCCccee--e
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLND--SIIVGTVN-GYSLFSCVTGQSGV--I 258 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~~--~l~vg~~~-~y~lidl~~g~~~~--l 258 (997)
....|-.+..|.|.+|.+... ....+ .+...| ..++.-. ...+|..+ ...|+|++.-...| .
T Consensus 112 --------~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 112 --------DDTFLSSSLDKTVRLWDLRVKKCQGLL---NLSGRP-IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred --------CCeEEecccCCeEEeeEecCCCCceEE---ecCCCc-ceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 123455667788888877632 22222 233333 2234433 34455555 68889987644433 3
Q ss_pred ecCCCCCCCCc--eEEcC-CCCeEEEEeC-CeEEEEcc-CCCccccccccC----CCCCeEEE--eCcEEEEEE-CCeEE
Q 043572 259 FTLPDVSCPPM--LKLLS-KEQKVLLLVD-NVGVFVDA-HGQPVGGSLVFR----KSPDAVGE--LSMYVVVLR-GGKME 326 (997)
Q Consensus 259 ~~~~~~~~~p~--i~~~~-~~~e~Ll~~~-~~g~fv~~-~G~~~r~~i~w~----~~P~~i~~--~~PYll~~~-~~~ie 326 (997)
|.+... ..+- -..++ ++.-+||+++ +....+|. +|.... ++.-. ..|....+ +.-||++-. ++.|.
T Consensus 180 f~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 180 FSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred EccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 554421 1121 22333 3434555544 34455665 677432 22211 12323333 234888665 58999
Q ss_pred EEecCCCceEEEEecC
Q 043572 327 LYHKKSGICVQAVTFG 342 (997)
Q Consensus 327 I~~~~~~~lvQ~i~~~ 342 (997)
|+++++|..|-...-+
T Consensus 258 vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGP 273 (311)
T ss_pred EEEcCCCcEeeEecCC
Confidence 9999999988776543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.22 E-value=22 Score=38.27 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=79.7
Q ss_pred EEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEE--EEEEC---CcEEEEEecCCcceeeecCCCCCCCCceE
Q 043572 197 FAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSI--IVGTV---NGYSLFSCVTGQSGVIFTLPDVSCPPMLK 271 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l--~vg~~---~~y~lidl~~g~~~~l~~~~~~~~~p~i~ 271 (997)
..-...|.+.+|-+..++...+.- -..+++++.|.++.. |+++. +.....|++ +..|++.+. ++-.+-
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R--~~~pv~t~~---LPeRvY 160 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR--SSNPVATLQ---LPERVY 160 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEecccccceeecccC--CCCeeeeee---ccceee
Confidence 334566778898888764443321 234679999998765 77765 466777765 334444332 122232
Q ss_pred EcCCCCeEE-EEe-CCeEEEEccCCCccc-----cccccCCCCCeEEEe---CcEEEEEECCeEEEEecCCCceEEEEec
Q 043572 272 LLSKEQKVL-LLV-DNVGVFVDAHGQPVG-----GSLVFRKSPDAVGEL---SMYVVVLRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 272 ~~~~~~e~L-l~~-~~~g~fv~~~G~~~r-----~~i~w~~~P~~i~~~---~PYll~~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..+-...++ |++ +.-...+|..+.++. +++.|.. +.|++. .-|.++-.++.+.|+++..+...+...|
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~--R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT--RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF 238 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee--eEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence 332122333 333 445556777776654 2566643 334333 5588888899999999988655555544
|
|
| >PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal | Back alignment and domain information |
|---|
Probab=90.20 E-value=3.5 Score=44.32 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCCCCChHHHHhhccC---CC--chHHHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCch----H
Q 043572 770 QERLQIFLQSSDLYDPEDVLDLIEG---SE--LWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPD----A 840 (997)
Q Consensus 770 r~kL~~fL~~s~~yd~~~~L~~~~~---~~--l~~e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~----l 840 (997)
--||..+|. +.+.+.+-++..++. .. -..-++.-..|+|+||+|+++++. .=.+.++.|++....++ -
T Consensus 208 LlKLQSLLC-gpsl~v~silpvLE~Lsed~~~gLSlhlLC~trL~~~E~sId~LLd--rCPqAVV~YA~helk~e~~~lW 284 (353)
T PF14763_consen 208 LLKLQSLLC-GPSLDVESILPVLEPLSEDTDGGLSLHLLCITRLGEYEKSIDKLLD--RCPQAVVPYANHELKEEHQELW 284 (353)
T ss_pred HHHHHHHHc-CCCccHHHHHHHHhhcccccccCeehhhhhhhhhccHHHHHHHHHH--hCcHHHHHHhhhhcccchHHHH
Confidence 345555554 556777776666542 21 123356667899999999999996 45788999999876332 2
Q ss_pred HHHHHHHhcCCC----CCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHH
Q 043572 841 YMQLLDMYLDSQ----DGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLR 900 (997)
Q Consensus 841 ~~~Ll~~~l~~~----~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~ 900 (997)
|..||-..-+.. +.++-........|+--+..+++.+.++.+|+|-+..-+-+||...-+
T Consensus 285 WkkLLpELc~rir~~~~~~~l~ls~LKEtLsvvA~eLe~~dFLnlLPeDGtAaFFLPyLl~cs~ 348 (353)
T PF14763_consen 285 WKKLLPELCDRIRCGGDRQELLLSSLKETLSVVAMELELRDFLNLLPEDGTAAFFLPYLLYCSR 348 (353)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhccCCHHHHHhhCCCccchHHHHHHHHHHHh
Confidence 666664332221 111112233444555556789999999999999999888888876544
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.21 Score=38.96 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|.+|.....+ .++.||||. +...|..+. ....||.++
T Consensus 1 ~~~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 44 (50)
T PF13920_consen 1 EDEECPICFENPRD--VVLLPCGHLCFCEECAERLLKRKKKCPICR 44 (50)
T ss_dssp -HSB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHHTTSBBTTTT
T ss_pred CcCCCccCCccCCc--eEEeCCCChHHHHHHhHHhcccCCCCCcCC
Confidence 35689999998654 778899999 999999987 456688543
|
... |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.85 E-value=41 Score=38.89 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=132.6
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC-eEEEe
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ-CLFLT 115 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~-~l~~~ 115 (997)
++-.|.+++-|+-|=.+..|....-..... ++- .+++. ...+|..+..-+..+.+|| +++. +..+|
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~--~fr--~l~P~--------E~h~i~sl~ys~Tg~~iLv-vsg~aqakl~ 241 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMR--SFR--QLQPC--------ETHQINSLQYSVTGDQILV-VSGSAQAKLL 241 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccch--hhh--ccCcc--------cccccceeeecCCCCeEEE-EecCcceeEE
Confidence 344588999999999999988876553211 110 11111 3447888888889998888 8876 88888
Q ss_pred ecCcccccc---------ccccccceE----EEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 116 DSLLTQPLK---------KLGFLKGIS----VIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 116 ~l~~l~~~~---------~~~~~kg~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+=.-++-.. .+..+||++ +-+++|..
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~----------------------------------------- 280 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN----------------------------------------- 280 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-----------------------------------------
Confidence 876655322 245566633 22222211
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCC--eEEEEEeEec-CC--cceEEEEeCC--EEEEEEC-CcEEEEEecCCc
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNG--SFVILKEIQC-MD--GVKTMVWLND--SIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~--~~~~~kei~~-~~--~~~~l~~~~~--~l~vg~~-~~y~lidl~~g~ 254 (997)
....|..+-.-.+.||...+. ..+.+|.-.. +. +|++.+|..+ .|.-|+. ....+.|..+-.
T Consensus 281 ----------k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 281 ----------KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ----------ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc
Confidence 112334444455666665442 1112222111 11 4578888843 4666654 467788875445
Q ss_pred ceeeecCCCC---CCCCceEEcCCCCeEEEEe--CCeEEEEccCCCccccccccCCCCCeE----EEeCc---EEEEEE-
Q 043572 255 SGVIFTLPDV---SCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQPVGGSLVFRKSPDAV----GELSM---YVVVLR- 321 (997)
Q Consensus 255 ~~~l~~~~~~---~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~i~w~~~P~~i----~~~~P---Yll~~~- 321 (997)
+.|.+.+.+. +..-....++.++.+|+.. |+..-.-|.. ...++-..|++-|..+ ++..| -|++-+
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr-q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR-QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc-ccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 5565555421 1112234445556777764 3332222221 1111123555444322 33334 222221
Q ss_pred ------CCeEEEEecCCCceEEEEecCCCCC
Q 043572 322 ------GGKMELYHKKSGICVQAVTFGGEGG 346 (997)
Q Consensus 322 ------~~~ieI~~~~~~~lvQ~i~~~~~~~ 346 (997)
.+.+.+++..+.+.||+|.++.+.+
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 2468999999999999999987643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=68 Score=40.89 Aligned_cols=240 Identities=13% Similarity=0.049 Sum_probs=119.7
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
...|+|++.. |+.|+.|+.+|.+..|........ +.. ...+.... ....+|..+...+..+..|+ +-
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-~~~-----~~~~~~~~----~~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-GRD-----IHYPVVEL----ASRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-ccc-----cccceEEe----cccCceeeEEeccCCCCEEEEEe
Confidence 3467877753 567999999999999987532110 000 00000001 13456777777765444444 33
Q ss_pred cCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.||+|.+|++..-..+..+. -...|..++.++.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~---------------------------------------------- 586 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA---------------------------------------------- 586 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC----------------------------------------------
Confidence 48899999987543322221 1122433333210
Q ss_pred cccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEecCCcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++. .++.+ ....|.+|.+..+. ....+.....+.++.|. +..+++|.. ....++|+.++.. ++...
T Consensus 587 -----~~~-~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~ 657 (793)
T PLN00181 587 -----DPT-LLASGSDDGSVKLWSINQGV--SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTM 657 (793)
T ss_pred -----CCC-EEEEEcCCCEEEEEECCCCc--EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEe
Confidence 111 23333 34567888776542 22333344567788885 456777755 4688899876532 22211
Q ss_pred CCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCcc--c-ccc-ccCCC---CCeEEEe--CcEEEEEE-CCeEEEEe
Q 043572 262 PDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPV--G-GSL-VFRKS---PDAVGEL--SMYVVVLR-GGKMELYH 329 (997)
Q Consensus 262 ~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~--r-~~i-~w~~~---P~~i~~~--~PYll~~~-~~~ieI~~ 329 (997)
......-....+.++ .++++ .|+...+.|..-... . ..+ .+.+. +..+.+. .+||++.. ++.|.|++
T Consensus 658 ~~h~~~V~~v~f~~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 658 IGHSKTVSYVRFVDS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred cCCCCCEEEEEEeCC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 111111111222333 44443 355555566431100 0 011 22221 2233333 46887665 67899988
Q ss_pred cCCCceE
Q 043572 330 KKSGICV 336 (997)
Q Consensus 330 ~~~~~lv 336 (997)
...+..+
T Consensus 737 ~~~~~~~ 743 (793)
T PLN00181 737 KAFPMPV 743 (793)
T ss_pred CCCCCce
Confidence 7655433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=40 Score=41.23 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCC
Q 043572 574 VEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEES 653 (997)
Q Consensus 574 ~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~ 653 (997)
+|+++..-++-++|+.|-.||+..|++++|+++-.. +|.- .|
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~----------~DRi-------------------------HL--- 857 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET----------KDRI-------------------------HL--- 857 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh----------ccce-------------------------eh---
Confidence 456666667778888888888888888888875331 1100 01
Q ss_pred CCHHHHHHHHhhhh-ccCchhhhhhcccccccCCCChhHHHHHhhccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 043572 654 SDEDLILQHLGWIA-DINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAK 732 (997)
Q Consensus 654 ~~~~li~~~~~wll-~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~ 732 (997)
....+.|+..|- +.|-+.|++-+-. .....-.|-+.|.++++ ...+|.. .. .|+.+..--.. |
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK----~~~hafev~rmL~e~p~-~~e~Yv~----~~--~d~~L~~WWgq-Y-- 921 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEK----AGVHAFEVFRMLKEYPK-QIEQYVR----RK--RDESLYSWWGQ-Y-- 921 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHh----cCChHHHHHHHHHhChH-HHHHHHH----hc--cchHHHHHHHH-H--
Confidence 133555555553 3456667777743 23455667777776654 3344443 21 23443333221 3
Q ss_pred HHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhc----CCCCChHHHHhhccCCCchHHHHHH----
Q 043572 733 SAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQS----SDLYDPEDVLDLIEGSELWLEKAIL---- 804 (997)
Q Consensus 733 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~----s~~yd~~~~L~~~~~~~l~~e~~~L---- 804 (997)
++...+ ++ .+-..+.+..++... .-.=..+++-++...++- ....|.
T Consensus 922 --lES~Ge-----------md-----------aAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~ 976 (1416)
T KOG3617|consen 922 --LESVGE-----------MD-----------AALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARM 976 (1416)
T ss_pred --Hhcccc-----------hH-----------HHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHH
Confidence 221110 00 011233333332211 011123444444443321 122333
Q ss_pred HHhhcchHHHHHHHHHhcCCHHHHHHHHhhcC-CchHHH
Q 043572 805 YRKLGQETLVLQILALKLEDSEAAEQYCAEIG-RPDAYM 842 (997)
Q Consensus 805 l~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~-~~~l~~ 842 (997)
|.-.|+..+|+..+. ...-|..|+..|+..+ +.++|.
T Consensus 977 YEn~g~v~~Av~FfT-rAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFT-RAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHH
Confidence 445577889999888 6788999999999876 234444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.55 E-value=9.3 Score=43.57 Aligned_cols=153 Identities=10% Similarity=0.097 Sum_probs=88.7
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
..|+|++.. +..|.-|...|.|..-....+... +.|-. -+..-|.-+..-+.-..+|++-+
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-------------t~f~~---~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-------------TTFTI---DSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccc-------------cceec---CCCCeEEEeecccccceeeEeecc
Confidence 589999843 457888899999886555443311 11100 01222333444444455666444
Q ss_pred CCeEEEeecCcccccccc-----ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLTQPLKKL-----GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~-----~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
+|.|++|+...-.|+..- ..++|+ |.. |+
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gi---cfs-------------------ps------------------------ 219 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGI---CFS-------------------PS------------------------ 219 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcc---eec-------------------CC------------------------
Confidence 469999998887776431 122221 111 11
Q ss_pred chhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEecCCccee
Q 043572 184 VKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSGV 257 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~~ 257 (997)
+....+-|+..|||.+|..... ...+.+....+..+++|. |..||.|+.+ +.+-+|+. +...|
T Consensus 220 --------ne~l~vsVG~Dkki~~yD~~s~--~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R-~~k~P 285 (673)
T KOG4378|consen 220 --------NEALLVSVGYDKKINIYDIRSQ--ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR-STKAP 285 (673)
T ss_pred --------ccceEEEecccceEEEeecccc--cccceeeecCCcceeeecCCceEEEeecCCceEEEEecc-cCCCC
Confidence 1124456788999999988753 333445554555777776 4569999665 67788987 44333
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.13 Score=38.84 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=32.9
Q ss_pred cCccccCcc-CCccEEEcCCCeEEEeccccccC--cccCCCCC
Q 043572 942 LCDSCHARL-GTKLFAMYPDDTIVCYKCYRRQG--ESTSITGR 981 (997)
Q Consensus 942 ~C~vC~k~l-~~~~f~v~p~g~~~H~~C~~~~~--~~~~~t~~ 981 (997)
.|++|.++. ....+.+.+|||++...|+.... ...||.++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~ 43 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICR 43 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCC
Confidence 499999999 34579999999999999999875 56788543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.1 Score=50.45 Aligned_cols=118 Identities=21% Similarity=0.170 Sum_probs=70.5
Q ss_pred cccccCCCCCCCcc-ceeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCC-------CCCCCCCCccccccccccc
Q 043572 16 SQFDLSHYSRSSPI-RSLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTL-------HVPNTTPSQQHVSFLKTVS 85 (997)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 85 (997)
+++|++......++ ....|.|++. -+..+|+||++|.++......-++... ..++. +...+.++
T Consensus 201 k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t----~~~~~~Gh-- 274 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT----QINVLVGH-- 274 (476)
T ss_pred EEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc----eeeeeccc--
Confidence 46676554333222 4467777664 477999999999998777665442111 01111 11112221
Q ss_pred cCCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccc-eEEEEeec
Q 043572 86 VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKG-ISVIAKRI 139 (997)
Q Consensus 86 ~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~ 139 (997)
-..++|+.+.+--+..-|+..-.||++.+|+..+.+-+-.+...|| |+....++
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 2347999999888888444433478999999988766555554565 44444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=69 Score=40.16 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHh
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARN 613 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~ 613 (997)
.+-++|+..|.+.++.++...++..-..- ..--|..|+.-|.+.|++++|+++|.+....
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK----------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCC----------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45577888888887644333322110000 1124789999999999999999999988654
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.5 Score=54.60 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=84.2
Q ss_pred HHHHHHhhcCC-CCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC------------HHHHHHHHhhcCC
Q 043572 771 ERLQIFLQSSD-LYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED------------SEAAEQYCAEIGR 837 (997)
Q Consensus 771 ~kL~~fL~~s~-~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D------------~~~Ae~yC~~~~~ 837 (997)
.-...+|+..+ +.+.+-+-..+.....+.+.++||..-|+|++||+++. ++.| ++..++|-...++
T Consensus 479 ~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~-~l~d~~~~~d~~~~~~~e~ii~YL~~l~~ 557 (877)
T KOG2063|consen 479 GLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLR-DLVDEDSDTDSFQLDGLEKIIEYLKKLGA 557 (877)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHH-HHhccccccccchhhhHHHHHHHHHHhcc
Confidence 34556777755 77888888888888899999999999999999999999 4544 2345666666555
Q ss_pred c--hHHHHHHHHhcCCCCCCchhHHHHHHHHHh----ccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHH
Q 043572 838 P--DAYMQLLDMYLDSQDGKEPMFKAAVRLLHN----HGESLDPLQVLETLSPDMPLQLASDTILRMLRARL 903 (997)
Q Consensus 838 ~--~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~----~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~ 903 (997)
+ ++.....+-.++.. | +.+++++.. ..+.+++.+|++.|+..-+ ..+-+||..++....
T Consensus 558 ~~~~Li~~y~~wvl~~~----p--~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~-~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 558 ENLDLILEYADWVLNKN----P--EAGIQIFTSEDKQEAESISRDDVLNYLKSKEP-KLLIPYLEHLISDNR 622 (877)
T ss_pred cchhHHHHHhhhhhccC----c--hhheeeeeccChhhhccCCHHHHHHHhhhhCc-chhHHHHHHHhHhcc
Confidence 4 44444444444432 1 224444443 4578999999998886543 233466776665543
|
|
| >PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.11 Score=46.17 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=24.2
Q ss_pred CcCccccCccCC-ccEEEcCCCeEEEecccccc
Q 043572 941 SLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 941 ~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~ 972 (997)
-+|.+||++|-. ..|.+++. -+||+.|+...
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~ 34 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREK 34 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHH
Confidence 379999999965 45665555 77999999874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.03 E-value=33 Score=37.26 Aligned_cols=58 Identities=7% Similarity=0.137 Sum_probs=35.6
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCCcceE---EEEeCCEEEEEEC----CcEEEEEecCC
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKT---MVWLNDSIIVGTV----NGYSLFSCVTG 253 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~---l~~~~~~l~vg~~----~~y~lidl~~g 253 (997)
.+|+|+.+.+|.+|++.++ .+.++.+..-.+|+. ++-..+.-.+++. .+..++|+...
T Consensus 105 ~riVvvl~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 105 DRIVVVLENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred CeEEEEecCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 4799999999999999865 555555444444433 3333344333333 36777777643
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.094 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCcCccccCccCCcc--------EEEcCCCeEEEecccccc----CcccCC
Q 043572 939 DESLCDSCHARLGTKL--------FAMYPDDTIVCYKCYRRQ----GESTSI 978 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~--------f~v~p~g~~~H~~C~~~~----~~~~~~ 978 (997)
++..|++||++|..+. .+---|+|+||..|.+.- ....||
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCP 274 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCP 274 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCc
Confidence 6789999999997543 555679999999999854 245588
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=69 Score=39.66 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=40.4
Q ss_pred eeeEEeecCC--eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDCQV--LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~~~--~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
-|+-++.++. -+.=|.+|-.+=.++..+...-+ +...+. +-.+|+.+..-|..+.+|-.--|+
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE------------vDtcrg---H~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE------------VDTCRG---HYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEecccccee------------ehhhhc---ccCCcceEEecCccceeEecCCCc
Confidence 3445555552 34445666666666665543211 111111 344788888778788444433378
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
++++|+|..
T Consensus 273 sirVwDm~k 281 (1202)
T KOG0292|consen 273 SIRVWDMTK 281 (1202)
T ss_pred cEEEEeccc
Confidence 999999744
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=88.66 E-value=3.5 Score=47.40 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=35.8
Q ss_pred ceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc-------eEEEEeCCEEEEEECCcEEEEEecCC
Q 043572 194 DNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV-------KTMVWLNDSIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 194 ~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~-------~~l~~~~~~l~vg~~~~y~lidl~~g 253 (997)
...+|+....++.+|.+-+ ++.+++..++..+ .++...|+.+++....+..++.+-..
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~--Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPS--LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred eEEEEEECCCcEEEEECCC--chHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEcc
Confidence 3456777777899999876 7777777775432 45556677788888889888888643
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.28 Score=53.02 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCcCccccCccCC--ccEEEcCCCeEEEeccccccC-cccCC-CCCCCCCcccc
Q 043572 939 DESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQG-ESTSI-TGRDFKKDVLI 989 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~~-~~~~~-t~~~f~~~~~~ 989 (997)
..-.|+++++.+.. ..+++.||||||-+.|++... ...|| +|..|...-+|
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCEE
Confidence 44589999999965 345567999999999999876 56799 99999877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.00 E-value=10 Score=44.30 Aligned_cols=85 Identities=24% Similarity=0.414 Sum_probs=50.9
Q ss_pred EEEEEECceEEEEEEeCC------------eEEEEEeEecCCcceEEEEeCCEEEEEECCcEEEEEecCCcceeeecCCC
Q 043572 196 VFAVIIGKRLVLIELVNG------------SFVILKEIQCMDGVKTMVWLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~------------~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y~lidl~~g~~~~l~~~~~ 263 (997)
.++++++..+.++++... .|..+.|+ ...|++..|.++.+++.+.+.-.. +-+|++..+-..
T Consensus 158 ~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d~fiYtT~~~lkY--l~~Ge~~~i~~l-- 231 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVEDCFIYTTSNHLKY--LVNGETGIIAHL-- 231 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETTEEEEE-TTEEEE--EETTEEEEEEE---
T ss_pred EEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcCEEEEEcCCeEEE--EEcCCcceEEEc--
Confidence 578889999999999877 89998887 568999999999877777773333 445665544333
Q ss_pred CCCCCceEEcCCCCeEEEEe-C--CeEEEEccCCCcc
Q 043572 264 VSCPPMLKLLSKEQKVLLLV-D--NVGVFVDAHGQPV 297 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~-~--~~g~fv~~~G~~~ 297 (997)
+ ..-+|+.+ + +...++|.+|++.
T Consensus 232 ----------d-~~~yllgy~~~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 232 ----------D-KPLYLLGYLPKENRLYLIDRDGNVI 257 (443)
T ss_dssp ----------S-S--EEEEEETTTTEEEEE-TT--EE
T ss_pred ----------C-CceEEEEEEccCCEEEEEECCCCEE
Confidence 2 23566663 2 5677778777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.1 Score=37.09 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 385 LLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 385 Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
|++.|+|++|+.+++..-...+.. ..+....|..++..|+|++|...+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678999999999998865432222 23455688889999999999999876
|
... |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.74 E-value=43 Score=35.85 Aligned_cols=234 Identities=14% Similarity=0.090 Sum_probs=129.0
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
.+-|+=+..|-.++.+.+..+....|. +++-++. +.+-|+.+.+.++.+.+|-.-.|+++++|++..-
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~---------~~r~~~G---HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGV---------PVRRLTG---HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCc---------eeeeeec---cceEecceEEccCCceEEeccccceEEEEEecCC
Confidence 345666788889999998777543332 1222221 4567999999999998888778999999999775
Q ss_pred ccccc-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEE
Q 043572 121 QPLKK-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAV 199 (997)
Q Consensus 121 ~~~~~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~V 199 (997)
++... .+-+++|..+++.+.. ..|+-
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn-----------------------------------------------------~qivS 122 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDN-----------------------------------------------------RQIVS 122 (315)
T ss_pred cEEEEEEecCCceEEEEecCCC-----------------------------------------------------ceeec
Confidence 44332 2446677777755422 12222
Q ss_pred EE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC---EEEEE--ECCcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 200 II-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND---SIIVG--TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 200 a~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~---~l~vg--~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
+. .|.|.+|...++.-..+.+..-.+=|.++.|.-+ .+++. -.+...+.|+++-+...-|+--.... .-+.+
T Consensus 123 GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~v 200 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVTV 200 (315)
T ss_pred CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEEE
Confidence 22 2346666665543222233222345678888743 34444 34578888887655443333211100 01112
Q ss_pred CCCCeEEEEe---CCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 274 SKEQKVLLLV---DNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 274 ~~~~e~Ll~~---~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+.+ --|+++ |...+..|. +|+... ++.=.....++++. .+.|.+.+...|.|.+++++..|-++.+..
T Consensus 201 SpD-GslcasGgkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 201 SPD-GSLCASGGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred CCC-CCEEecCCCCceEEEEEccCCceeE-eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 212 122222 234444443 222211 11111122233333 345666778899999999999888876644
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.6 Score=47.91 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-cCcEEEEecCCeEEEeecCc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-VGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-~~~lLv~l~d~~l~~~~l~~ 119 (997)
+.+|.|||++|.+-.+++.-+...+ +. ..+.+.++ .+-.+|..|..=|- .+.|++++.|.++.+|+|..
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e----~~---~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPE----NE---MTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCc----cc---CCcceeee---cccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 5689999999999999997654321 10 01222222 34556777776664 45566667799999999976
Q ss_pred cccccc-cccccceEEEEee
Q 043572 120 TQPLKK-LGFLKGISVIAKR 138 (997)
Q Consensus 120 l~~~~~-~~~~kg~~~f~~~ 138 (997)
-..-.. .+-+.++-.||+.
T Consensus 710 ~~~~~~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWS 729 (1012)
T ss_pred hhhhheeccCcCceeEEEEC
Confidence 432221 1223344455543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.33 E-value=22 Score=41.64 Aligned_cols=52 Identities=17% Similarity=-0.021 Sum_probs=34.3
Q ss_pred CCCcceEEEeecccCcEEEEe-cCCeEEEeecCccccccccccccceEEEEeec
Q 043572 87 ADSPVESIFVLDDVGKVLLLF-CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRI 139 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~ 139 (997)
.+..|..|.+-|.++ .|++- .||+|++|.+.+..-+-.....--+.+++.++
T Consensus 399 Htg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P 451 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNP 451 (733)
T ss_pred cCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecC
Confidence 566899999999888 44434 36799999987765443333333455555554
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.36 Score=50.51 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred EEcCCCcCccccCccCCccEEEcCCCeEEEeccccccCc----ccCC-CCC
Q 043572 936 QINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGE----STSI-TGR 981 (997)
Q Consensus 936 ~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~----~~~~-t~~ 981 (997)
+-+.++.|++||++=.. ++..-||||++.|.|...... .+|| -|.
T Consensus 235 ~~t~~~~C~~Cg~~Pti-P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTI-PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred cccCCceeeccCCCCCC-CeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 34578999999987553 688899999999999998743 5788 443
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.26 Score=51.82 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=32.6
Q ss_pred cCCCcCccccCccCCcc-----EE-EcCCCeEEEecccccc--CcccCCCCC
Q 043572 938 NDESLCDSCHARLGTKL-----FA-MYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~-----f~-v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
..+..|++|...+.... ++ +-||||+||..|...- ....||.|+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR 223 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCC
Confidence 45789999999876432 33 4479999999999753 345799765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.12 E-value=31 Score=41.69 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=74.4
Q ss_pred ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CC-EEEEEECC-cEEEEEecCCcceeeecCCCCCCCCceEEc---CCC
Q 043572 203 KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-ND-SIIVGTVN-GYSLFSCVTGQSGVIFTLPDVSCPPMLKLL---SKE 276 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~-~l~vg~~~-~y~lidl~~g~~~~l~~~~~~~~~p~i~~~---~~~ 276 (997)
..+.+|..+ ..+..+.+... -+.+..|. |+ .|.+|+++ +..++|+.++...+..+-- .-.|.++ +++
T Consensus 394 ~SikiWn~~--t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH----dgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 394 ESIKIWNRD--TLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH----DGAIWSISLSPDN 466 (888)
T ss_pred CcEEEEEcc--CcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc----ccceeeeeecCCC
Confidence 555554443 34555555443 45566666 33 49999887 4888888766544444311 1233333 444
Q ss_pred CeEEEE-eCCeEEEEc------cCCCccc-------cccccCCCCCeEEEe--CcEEEE-EECCeEEEEecCCCce
Q 043572 277 QKVLLL-VDNVGVFVD------AHGQPVG-------GSLVFRKSPDAVGEL--SMYVVV-LRGGKMELYHKKSGIC 335 (997)
Q Consensus 277 ~e~Ll~-~~~~g~fv~------~~G~~~r-------~~i~w~~~P~~i~~~--~PYll~-~~~~~ieI~~~~~~~l 335 (997)
..|+.+ .|...-|.+ .-|...+ .+++.++....+.+. .-|+.+ +.++++.||.+.+...
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 455555 455555533 2243322 267888777777776 457764 6799999999988544
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.1 Score=48.61 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=30.6
Q ss_pred cCCCcCccccCccCCc-----------cEEEcCCCeEEEeccccccC--cccCCCC
Q 043572 938 NDESLCDSCHARLGTK-----------LFAMYPDDTIVCYKCYRRQG--ESTSITG 980 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~-----------~f~v~p~g~~~H~~C~~~~~--~~~~~t~ 980 (997)
..++.|.+|--.+.-+ .=-+-||||+.|.+|++.-. ...||-|
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPIC 340 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPIC 340 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcc
Confidence 3678999998775321 12468999999999999742 2458833
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=86.02 E-value=0.21 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.7
Q ss_pred CccccCccCCccEEEcCCCeEEEecccccc
Q 043572 943 CDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 943 C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
|++|.... ...++.|+||.+|+.|....
T Consensus 1 C~iC~~~~--~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEEL--KDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCC--CCcEEecCCChHHHHHHHHH
Confidence 78888873 35667899999999999864
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.8 Score=35.36 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+...+++.|+|++|+..++..-...+.. ...+...|..++.+|++++|...|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999998876543322 24566688899999999999998876
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.94 E-value=23 Score=37.43 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=90.4
Q ss_pred EEEEECceEEEEEEeCCeEEEEEeEec---CCcceEEEEeC---CEEEEE-ECCcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 197 FAVIIGKRLVLIELVNGSFVILKEIQC---MDGVKTMVWLN---DSIIVG-TVNGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 197 l~Va~kkki~i~~~~~~~~~~~kei~~---~~~~~~l~~~~---~~l~vg-~~~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
.+-+..+++.++.....+|. ++... .+.+..++|.. +.++.+ ..+...+.|+.+|..+.-...... +-.
T Consensus 36 asgs~dktv~v~n~e~~r~~--~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e--ni~ 111 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDRFR--KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE--NIN 111 (313)
T ss_pred eecccCCceEEEEecchhhh--hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc--ceE
Confidence 34567788888888766433 33222 33566777773 446655 446899999987654433333221 122
Q ss_pred eEEcCCCCeEEEE-eCCeEEEEccCCCccccccccCCCCCeEEEeCc-EEEEE--ECCeEEEEecCCCceEEEEecCCCC
Q 043572 270 LKLLSKEQKVLLL-VDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSM-YVVVL--RGGKMELYHKKSGICVQAVTFGGEG 345 (997)
Q Consensus 270 i~~~~~~~e~Ll~-~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P-Yll~~--~~~~ieI~~~~~~~lvQ~i~~~~~~ 345 (997)
|.--|+++.+.+. .|++..|+|..-.....+-++...-..+.+..+ -++.+ ..+.|+|-+......||+|.-..+
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s- 190 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS- 190 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc-
Confidence 2222334344443 567778877543222112222222223333322 23333 347999999999999999965443
Q ss_pred CCCceecccccCCCcEEEEEcCCe
Q 043572 346 GGQCIATDEECGAGKLLVVATPTK 369 (997)
Q Consensus 346 ~~~~i~~~~~~~~g~~~~v~s~~~ 369 (997)
.|++..++. +|+.|-+.|...
T Consensus 191 --nCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 191 --NCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred --ceEEEEECC-CCceEeeccccc
Confidence 677766554 456454444433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=85.89 E-value=8.1 Score=43.92 Aligned_cols=77 Identities=8% Similarity=0.080 Sum_probs=55.2
Q ss_pred ceeeeeEEeec--C-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDC--Q-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
++.-.+|+... + +-+++|+++|.|++|.+.... .+|... + .-.+|..|..+++..+.+-+
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----------vvqeYd--~----hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----------VVQEYD--R----HLGAILDITFVDEGRRFISS 360 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----------HHHHHH--h----hhhheeeeEEccCCceEeee
Confidence 34456777654 3 458899999999999987543 222222 1 45689999999999988886
Q ss_pred ecCCeEEEeecCccccc
Q 043572 107 FCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~ 123 (997)
-.|+.+++|....-.|+
T Consensus 361 SDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPI 377 (503)
T ss_pred ccCccEEEEEcCCCccc
Confidence 66789999988764444
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.65 E-value=0.36 Score=50.96 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=33.5
Q ss_pred CCcCccccCccC-CccEEEcCCCeEEEecccccc---CcccCCCCC
Q 043572 940 ESLCDSCHARLG-TKLFAMYPDDTIVCYKCYRRQ---GESTSITGR 981 (997)
Q Consensus 940 ~~~C~vC~k~l~-~~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~ 981 (997)
+-.|++|=..+- +....|.||.|.||..|..+- ..+.||+|+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCr 368 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccC
Confidence 357999987763 345889999999999999874 467799875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.27 E-value=9.4 Score=47.88 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=59.2
Q ss_pred ceeeeeEEee--cCCe----EEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 30 RSLSISPISD--CQVL----IYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~--~~~~----l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
.+++..+.++ |+.. |.=|++||.|-.|.-.....+... ..+. .+. ....+|.-+.+=+..+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-----~~la--~~~----~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-----EVLA--TKS----KHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-----HHHh--hhc----ccCCceeeeeccccCCce
Confidence 4567777774 3444 666899999999988663111000 0111 111 255688888887777756
Q ss_pred EEEec-CCeEEEeecCccc-ccc--ccccccceEEEEee
Q 043572 104 LLLFC-DQCLFLTDSLLTQ-PLK--KLGFLKGISVIAKR 138 (997)
Q Consensus 104 Lv~l~-d~~l~~~~l~~l~-~~~--~~~~~kg~~~f~~~ 138 (997)
|.+=+ ||.|++|+|..++ |.+ .......|++++.+
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN 170 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence 66333 4699999999876 322 22344556666655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.03 E-value=61 Score=39.81 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHhhcch----------------hh--HHH--HHHHHHHHHHHHhhhhcHHHHHHHHHhcC
Q 043572 385 LLRKKDFKEAISLAEELECEGE----------------MA--KEM--LSFVHAQIGFLLLFDLHFEEAVDHFLHSE 440 (997)
Q Consensus 385 Ll~~~~~eeAl~L~~~~~~~~~----------------~~--~~~--l~~i~~~~~~~lf~~~~f~~A~~~f~~~~ 440 (997)
.++.|..|+|+.|-++|..-+. +. +++ ++.-|-+||-+|=..++-+.|+++|.+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 3567888888888877643211 00 112 44555557776777889999999999976
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.99 E-value=31 Score=37.28 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-c
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-C 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~ 108 (997)
.-+.|+.++ |+.|.+||+.-.+..|.+..-.-+.+. . +... ....|.|+..-+..+ +-|.- -
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa------n--Pd~q------ht~ai~~V~Ys~t~~-lYvTaSk 281 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA------N--PDDQ------HTGAITQVRYSSTGS-LYVTASK 281 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec------C--cccc------cccceeEEEecCCcc-EEEEecc
Confidence 456777765 889999999999999999865432211 1 1111 345899999988888 55533 3
Q ss_pred CCeEEEeecCc
Q 043572 109 DQCLFLTDSLL 119 (997)
Q Consensus 109 d~~l~~~~l~~ 119 (997)
||.+.+|+--+
T Consensus 282 DG~IklwDGVS 292 (430)
T KOG0640|consen 282 DGAIKLWDGVS 292 (430)
T ss_pred CCcEEeecccc
Confidence 88999998543
|
|
| >COG4847 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.96 E-value=0.25 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=25.8
Q ss_pred CCcCccccCccCC-ccEEEcCCCeEEEecccccc
Q 043572 940 ESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 940 ~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~ 972 (997)
+-+|.||+.++-. ..|..+|.|. |||.|+...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~kGs-VH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTKKGS-VHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEeeCCc-chHHHHHHH
Confidence 3589999999954 5788889654 899999864
|
|
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.6 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEE
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILL 56 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y 56 (997)
..|+||+.-++++.++|+.|.|..|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5799999999999999999988776
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.22 E-value=14 Score=44.39 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=91.7
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
....|.|+...++.++-||.||.+.+|...... ++++.+-+..+|..+.+-.. ++++=.--|
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-----------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-----------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhce-----------------eeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 346899999999999999999999999988432 11111114557888855544 645554458
Q ss_pred CeEEEeecCcc-ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLT-QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l-~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|++... ..+... +|...+... ..
T Consensus 392 ~~IkvWdl~~~~~c~~tl---~~h~~~v~~--------------l~---------------------------------- 420 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTL---QGHTSLVSS--------------LL---------------------------------- 420 (537)
T ss_pred cceEeecCCchhhhhhhh---cCCcccccc--------------cc----------------------------------
Confidence 89999999886 443322 121111100 00
Q ss_pred cccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC--CcceEEEEeCC-EEEEEECCcEEEEEecCCcc
Q 043572 189 QHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM--DGVKTMVWLND-SIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 189 ~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~--~~~~~l~~~~~-~l~vg~~~~y~lidl~~g~~ 255 (997)
-.+...+.-....+|.++....+ ...+.+..+ ..+.++.+..+ .+|.+....+.+.|+.+|+-
T Consensus 421 --~~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 421 --LRDNFLVSSSADGTIKLWDAEEG--ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred --cccceeEeccccccEEEeecccC--ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 00112233345556777655443 333333332 45666666534 46777888999999998854
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.97 E-value=6.4 Score=45.85 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=38.3
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEe--CCEEEEE-ECCcEEEEEecCC
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWL--NDSIIVG-TVNGYSLFSCVTG 253 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~--~~~l~vg-~~~~y~lidl~~g 253 (997)
.+++||+++.|.||.+.....+ |++ ....-+.+|+.. |+.|++| +.+.+.-+|++-+
T Consensus 579 p~lfVaTq~~vRiYdL~kqelv--KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 579 PYLFVATQRSVRIYDLSKQELV--KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred ceEEEEeccceEEEehhHHHHH--HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 5799999999999999764222 221 112233455555 5777777 6788999998744
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.76 E-value=23 Score=39.12 Aligned_cols=40 Identities=10% Similarity=0.230 Sum_probs=28.9
Q ss_pred cccCcEEEEecCCeEEEeecCcccccccccc----ccceEEEEee
Q 043572 98 DDVGKVLLLFCDQCLFLTDSLLTQPLKKLGF----LKGISVIAKR 138 (997)
Q Consensus 98 ~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~----~kg~~~f~~~ 138 (997)
=..+||+|+|.+. +|+|++....+++++.. -+|+..++.+
T Consensus 95 mNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 95 MNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 3467899967665 99999999988876544 3566655544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=83.57 E-value=84 Score=35.49 Aligned_cols=171 Identities=15% Similarity=0.210 Sum_probs=96.1
Q ss_pred ceEEEEEEe--CCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-----cEEEEEecC--CcceeeecCCCCCCCCceE
Q 043572 203 KRLVLIELV--NGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-----GYSLFSCVT--GQSGVIFTLPDVSCPPMLK 271 (997)
Q Consensus 203 kki~i~~~~--~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-----~y~lidl~~--g~~~~l~~~~~~~~~p~i~ 271 (997)
+.|..|++. .+.+.....+.....|..+++. ++.|+++... ....+++.. |....+-.....+..|+-.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 468888884 4478887777778889999984 5668888663 455555553 4444443333344567666
Q ss_pred EcCCCCeEEEEeC----CeEEE-EccCCCcccc--cc-----------ccCCCCCeEEEeC--cEEEEEE--CCeEEEEe
Q 043572 272 LLSKEQKVLLLVD----NVGVF-VDAHGQPVGG--SL-----------VFRKSPDAVGELS--MYVVVLR--GGKMELYH 329 (997)
Q Consensus 272 ~~~~~~e~Ll~~~----~~g~f-v~~~G~~~r~--~i-----------~w~~~P~~i~~~~--PYll~~~--~~~ieI~~ 329 (997)
.+..++.+|++.+ .+.+| ++.+|..... .+ +....|..+.+.. -|+++.. .+.|.++.
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 6654556666532 34444 5556765543 11 2234456666663 3777654 57899999
Q ss_pred cCCCc--e--EEEEecCCCCCCCceecccccCCCcEEEEEc--CCeEEEEeec
Q 043572 330 KKSGI--C--VQAVTFGGEGGGQCIATDEECGAGKLLVVAT--PTKVICYQKV 376 (997)
Q Consensus 330 ~~~~~--l--vQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s--~~~V~~l~~~ 376 (997)
+.... + +..+.++...-++.+.-. . +|+.+|+.. .+.|..+..-
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~--p-dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFS--P-DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE---T-TSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEc--C-CcCEEEEecCCCCcEEEEeec
Confidence 87644 5 455555543212333321 2 245566655 4555555433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=83.24 E-value=97 Score=35.93 Aligned_cols=239 Identities=16% Similarity=0.105 Sum_probs=122.9
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCcc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLT 120 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l 120 (997)
+.||.|-.-.|.++-+....++- ....--|-+ -.||-|..+..+|..+ .+-.=+||.+.+|+-..-
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l----------~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSL----------VKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN 277 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCce----------EEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence 77899999999887664444331 111111222 2567788888888888 555578899999974221
Q ss_pred ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE
Q 043572 121 QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI 200 (997)
Q Consensus 121 ~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va 200 (997)
..+|-+. |.+ ++...+|.+
T Consensus 278 ------~~~k~~~--aH~-----------------------------------------------------ggv~~L~~l 296 (626)
T KOG2106|consen 278 ------RISKQVH--AHD-----------------------------------------------------GGVFSLCML 296 (626)
T ss_pred ------eEEeEee--ecC-----------------------------------------------------CceEEEEEe
Confidence 1111111 111 011122221
Q ss_pred -------ECceEEEEEEeCCeEEEEEeEecCC---cceEEEEeCCEEEEEECCcEEEEE-ecCCcceeeecCCCCCCCCc
Q 043572 201 -------IGKRLVLIELVNGSFVILKEIQCMD---GVKTMVWLNDSIIVGTVNGYSLFS-CVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 201 -------~kkki~i~~~~~~~~~~~kei~~~~---~~~~l~~~~~~l~vg~~~~y~lid-l~~g~~~~l~~~~~~~~~p~ 269 (997)
..|-=.+..|+ +..++.+|+.+|+ +|+.+.--+.-|+||+.+++.+.- ++++.....+-.++.- =-
T Consensus 297 r~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~del--wg 373 (626)
T KOG2106|consen 297 RDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDEL--WG 373 (626)
T ss_pred cCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccce--ee
Confidence 11112234455 4578888888887 457776554459999998888763 3333322222222210 01
Q ss_pred eEEcCCCCeEEEEeCC-eEEEEccCCCccccccccC---CCC-CeEEEeCcEEEE--EECCeEEEEecCCCceEEEEecC
Q 043572 270 LKLLSKEQKVLLLVDN-VGVFVDAHGQPVGGSLVFR---KSP-DAVGELSMYVVV--LRGGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 270 i~~~~~~~e~Ll~~~~-~g~fv~~~G~~~r~~i~w~---~~P-~~i~~~~PYll~--~~~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
++..++.+.|+-|..+ ..-.-| ...+.|+ ..| ....++.-=+++ ...+..-|.+.++..+||.-.-+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~------~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN------DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc------CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecC
Confidence 2223444455555432 222223 1135564 223 333443322333 35788899999998888765443
Q ss_pred CCCCCCceecccccCCCcEEEEEcCC
Q 043572 343 GEGGGQCIATDEECGAGKLLVVATPT 368 (997)
Q Consensus 343 ~~~~~~~i~~~~~~~~g~~~~v~s~~ 368 (997)
. +..+..|.. .|..+-++|..
T Consensus 448 ~----~ls~v~ysp-~G~~lAvgs~d 468 (626)
T KOG2106|consen 448 E----QLSVVRYSP-DGAFLAVGSHD 468 (626)
T ss_pred C----ceEEEEEcC-CCCEEEEecCC
Confidence 3 222222322 34555566643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.05 E-value=30 Score=38.20 Aligned_cols=132 Identities=19% Similarity=0.115 Sum_probs=80.8
Q ss_pred ccCcEEEEecCCeEEEeecCcccccc-ccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQPLK-KLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~~~~-~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
....+.|+..|.+|++|+=..-.|.. +-...|++++.+.+|..
T Consensus 109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPls------------------------------------ 152 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLS------------------------------------ 152 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCC------------------------------------
Confidence 34445554667899999877643321 33456789999987632
Q ss_pred ccCCccchhcccccCCceEEEEEECceEEEEEEeCC-eEEE---------EEeEecCC--cceEEEEeCCEEEEEE----
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVI---------LKEIQCMD--GVKTMVWLNDSIIVGT---- 241 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~---------~kei~~~~--~~~~l~~~~~~l~vg~---- 241 (997)
...++|+.+..|.++..+.. ...+ ..-+..|+ +|.+|.|.++...+++
T Consensus 153 ----------------aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 153 ----------------ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred ----------------cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence 12478899999999887643 1111 01122233 5699999976533332
Q ss_pred CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC
Q 043572 242 VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD 284 (997)
Q Consensus 242 ~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~ 284 (997)
.+.+.+.|.++|..+||.+.+..+.. +...+.++.+|.|..
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~s--lLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFS--LLKWSPDGDVLFAAT 257 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCcee--eEEEcCCCCEEEEec
Confidence 35899999999999999876532221 122233456666643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=83.00 E-value=1.5e+02 Score=37.79 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=33.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 382 IKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 382 i~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
...+...|++++|+...+......+... ......|..+...+++++|...+.+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEI----EPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556678899999988877533221111 1223355667778888888888765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=82.92 E-value=93 Score=35.49 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=70.4
Q ss_pred EeCCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCccccccccCCCC-
Q 043572 232 WLNDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVFRKSP- 307 (997)
Q Consensus 232 ~~~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w~~~P- 307 (997)
..++.++++. ......+|..+|+..--.+... ...|.+ . ++.+.++. +.....+|. +|+ +.|...+
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~---~-~~~vyv~~~~G~l~~~d~~tG~-----~~W~~~~~ 308 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV---D-DNRLYVTDADGVVVALDRRSGS-----ELWKNDEL 308 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE---e-CCEEEEECCCCeEEEEECCCCc-----EEEccccc
Confidence 4577788775 4578889998886544333221 112221 2 33444443 344455564 444 3453311
Q ss_pred -----CeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEcCCeEEEEe
Q 043572 308 -----DAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVATPTKVICYQ 374 (997)
Q Consensus 308 -----~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~ 374 (997)
...++...+|++.. ++.|.+.+..+|+++.++++... ..+...+. .+++|+...++.|++++
T Consensus 309 ~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-----~~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 309 KYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-----GDGLLVQTRDGDLYAFR 377 (377)
T ss_pred cCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-----CCEEEEEeCCceEEEeC
Confidence 11133455666654 56788888899999998887652 11222222 23555555567888763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=82.79 E-value=82 Score=39.19 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=81.1
Q ss_pred cHHHHHHHHHH----cC----ChhHHHHHHhhcCChHHHHHHHHHHHHhcCC--CCCCCCcccccccccccccccchhhh
Q 043572 573 IVEELETLLDE----SG----HLRTLAFLYASKGMSSKALAIWRVLARNYSS--GLWKDPAVENDLLDGCADVMSGREVA 642 (997)
Q Consensus 573 ~~e~~~~~L~~----~~----~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~--~~~~d~~~~~~l~~~~~~~l~~~~~~ 642 (997)
+.++++++|++ .. -|..|+.+|+.+|++.++|..|...++-.-. ++|. ...++. ..+.+...+
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~---~ladls----~~~~~i~qA 226 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK---RLADLS----EQLGNINQA 226 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH---HHHHHH----HhcccHHHH
Confidence 44555555543 32 4899999999999999999999877754211 1111 001111 011112222
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHhhhhccC-chhhh----hhcccccccCCCChhHHHHHh--------hccChHHHHHHH
Q 043572 643 ATEASKILEE-SSDEDLILQHLGWIADIN-AVLAV----KVLTSEKRINQLSPDKVIAAI--------DSKKVEILQRYL 708 (997)
Q Consensus 643 ~~~~~~~L~~-~~~~~li~~~~~wll~~~-p~~~l----~if~~~~~~~~l~~~~Vl~~L--------~~~~~~~~~~YL 708 (997)
..-+.+-++- ..++.++|+++....+.. -..|+ ++|... ...+.+.+.+.+ .....+.+..+|
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2223333333 467889999987776442 23333 344322 123334444322 222336778888
Q ss_pred HHHHhcC-CCCChHHHHHHHHHHHH
Q 043572 709 QWLIEDQ-DSDDTQFHTLYALSLAK 732 (997)
Q Consensus 709 E~li~~~-~~~~~~~h~~L~~lyi~ 732 (997)
|.-+... ...+-.-|+.|+++|+.
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHH
Confidence 8776622 22344567788888865
|
|
| >smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3 | Back alignment and domain information |
|---|
Probab=82.51 E-value=0.91 Score=32.75 Aligned_cols=30 Identities=10% Similarity=0.325 Sum_probs=24.4
Q ss_pred cCccccCccCCccEEEcCCCeEEEeccccc
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRR 971 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~ 971 (997)
+|..|+++|.....++...|..+|..|+.=
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C 30 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKC 30 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCC
Confidence 599999999876566666788999999763
|
Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.35 E-value=99 Score=37.86 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=95.1
Q ss_pred eEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CC-EEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCce
Q 043572 195 NVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--ND-SIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPML 270 (997)
Q Consensus 195 ~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~-~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i 270 (997)
..|-..+.|.+.+|....+ .-++-|.-++-|++++|. ++ ..+=|+ ....-|.++.+.++..-... +-+|
T Consensus 382 fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-----~~lI 454 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-----RDLI 454 (712)
T ss_pred eeEeccccccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-----hhhh
Confidence 3455567888999887753 445566678889999988 33 355553 34677777765544333332 2344
Q ss_pred EEc---CCCCeEEEE-eCCeEEEEccCCCcccc--ccccC------C-CCCeEEEe--CcE-EEEE-ECCeEEEEecCCC
Q 043572 271 KLL---SKEQKVLLL-VDNVGVFVDAHGQPVGG--SLVFR------K-SPDAVGEL--SMY-VVVL-RGGKMELYHKKSG 333 (997)
Q Consensus 271 ~~~---~~~~e~Ll~-~~~~g~fv~~~G~~~r~--~i~w~------~-~P~~i~~~--~PY-ll~~-~~~~ieI~~~~~~ 333 (997)
.++ |+++-.+++ +++.+.|++..|...+. .|.-. . -.+++-+. .|= |++- .+..|.|++..+-
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 333 444334444 78899999988764332 12111 0 01222222 221 4444 3678999999887
Q ss_pred ceEEEEe-cCCCCCCCceecccccCCCcEEEEEc-CCe--EEEEeecC
Q 043572 334 ICVQAVT-FGGEGGGQCIATDEECGAGKLLVVAT-PTK--VICYQKVP 377 (997)
Q Consensus 334 ~lvQ~i~-~~~~~~~~~i~~~~~~~~g~~~~v~s-~~~--V~~l~~~~ 377 (997)
.+++... +.+. +..+.+.|.. +|+.++.+| ++. ||.+..-+
T Consensus 535 ~lv~KfKG~~n~--~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 535 DLVHKFKGFRNT--SSQISASFSS-DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hhhhhhcccccC--CcceeeeEcc-CCCEEEEeecCceEEEEeCCCCc
Confidence 8877764 3332 1224444443 456455555 333 44444333
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.06 E-value=29 Score=36.44 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=59.0
Q ss_pred ccccccCC-CCCCCccce--eeeeEEee-cCCeEEEE-cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCC
Q 043572 15 LSQFDLSH-YSRSSPIRS--LSISPISD-CQVLIYIG-TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADS 89 (997)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~--~~I~ci~~-~~~~l~iG-T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (997)
.-|||+.. .-|...+.. ..|.-+.. .+++-++. |++|.+.++.+.... .++.. ..+.
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL-------~~~s 185 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSL-------EFNS 185 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEE-------ecCC
Confidence 34778632 223333333 46665554 35554554 999999999887543 22222 2678
Q ss_pred cceEEEeecccCcEEEEecC-CeEEEeecCcccccc
Q 043572 90 PVESIFVLDDVGKVLLLFCD-QCLFLTDSLLTQPLK 124 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d-~~l~~~~l~~l~~~~ 124 (997)
+|+.+.+.++.. +|. +++ +.|.+|+-.+|.++.
T Consensus 186 ~VtSlEvs~dG~-ilT-ia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 186 PVTSLEVSQDGR-ILT-IAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred CCcceeeccCCC-EEE-EecCceeEEecccccccee
Confidence 999999988877 777 554 599999998887764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.82 E-value=1.1e+02 Score=37.06 Aligned_cols=267 Identities=13% Similarity=0.083 Sum_probs=134.9
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|.+. .++.||.....+.+-.|.++...- .+..+. ++.+||--|.+.|....+-..=+|
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~--------------irswKa--~He~Pvi~ma~~~~g~LlAtggaD 126 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKL--------------IRSWKA--IHEAPVITMAFDPTGTLLATGGAD 126 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchH--------------hHhHhh--ccCCCeEEEEEcCCCceEEecccc
Confidence 46777553 456788888888888888876531 111111 368899999999999633333468
Q ss_pred CeEEEeecCccccccccccccc-eEEEEeecccC-------CccccccccccccccccccCCcccchhhhhccCcccc-C
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKG-ISVIAKRIRTS-------DSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA-N 180 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg-~~~f~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~ 180 (997)
+.+.+|++..-.-++.....+| |+.+.-+++.. .++.+..+= +. .. ..+ .+.....|-++ .
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw-nl----~~--~~t---cl~~~~~H~S~vt 196 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW-NL----ND--KRT---CLHTMILHKSAVT 196 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE-Ec----cc--Cch---HHHHHHhhhhhee
Confidence 8999999876444444455555 34444444332 111111110 00 00 000 01111122111 2
Q ss_pred CccchhcccccCCceEEEEEECce-EEEEEEeCCeEEEEEeEecCCcceEEEEeCC-------E-EEEEECCcEEEEEec
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVILKEIQCMDGVKTMVWLND-------S-IIVGTVNGYSLFSCV 251 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~~kei~~~~~~~~l~~~~~-------~-l~vg~~~~y~lidl~ 251 (997)
|+-..+ ++.. +.-+.+.| +.+|.+.. .+..+-+++.+.+-++.+..+ . +-+|....+.++|.+
T Consensus 197 sL~~~~-----d~~~-~ls~~RDkvi~vwd~~~--~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 197 SLAFSE-----DSLE-LLSVGRDKVIIVWDLVQ--YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred eeeecc-----CCce-EEEeccCcEEEEeehhh--hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 222111 2222 33344444 45666632 344444555555555555533 3 555566778888887
Q ss_pred CCcceeeecCC-CCCCCCceEEcCCCCeEE-EEeCCeEEEEcc-CCCccccccccCCCCCeEEEeC---cEEEEEE-CCe
Q 043572 252 TGQSGVIFTLP-DVSCPPMLKLLSKEQKVL-LLVDNVGVFVDA-HGQPVGGSLVFRKSPDAVGELS---MYVVVLR-GGK 324 (997)
Q Consensus 252 ~g~~~~l~~~~-~~~~~p~i~~~~~~~e~L-l~~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~~---PYll~~~-~~~ 324 (997)
+|...-.-..+ ++.... +..+.....++ +..+...++++. ++.+++.-+-.++....+.+.. -|+.+.+ ...
T Consensus 269 s~~~~~~~~~~~~~e~~~-~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDH-LLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred cchhhhhhccCCchhhhc-ceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 66432221111 111111 22222233444 445556666764 4555543344555566666666 4776665 457
Q ss_pred EEEEecCCC
Q 043572 325 MELYHKKSG 333 (997)
Q Consensus 325 ieI~~~~~~ 333 (997)
+.+|...+.
T Consensus 348 lr~y~~~~~ 356 (775)
T KOG0319|consen 348 LRLYTLPTS 356 (775)
T ss_pred eEEEecCCC
Confidence 788865553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.61 E-value=65 Score=37.84 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCCCCccceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc
Q 043572 23 YSRSSPIRSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV 100 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~ 100 (997)
....+.+..+.|+++... |..|.|||.+|.+..|...+...- +.. .-+-...+.++.=.
T Consensus 209 v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~------------~~~-------~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 209 VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT------------RTL-------RGSHASRVGSLAWN 269 (484)
T ss_pred eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc------------ccc-------cCCcCceeEEEecc
Confidence 334455556788888865 889999999999999988765420 011 11123345555444
Q ss_pred CcEEEEec-CCeEEEeecCcccc
Q 043572 101 GKVLLLFC-DQCLFLTDSLLTQP 122 (997)
Q Consensus 101 ~~lLv~l~-d~~l~~~~l~~l~~ 122 (997)
+..+.+-+ |+.+..+++..-+.
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CceEEEecCCCcEEEEEEecchh
Confidence 43333222 45888888876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=80.06 E-value=99 Score=35.36 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=111.1
Q ss_pred ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCCeEEEeec
Q 043572 39 DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQCLFLTDS 117 (997)
Q Consensus 39 ~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l 117 (997)
..|+.+|+.+.+|.+-.+...... ..+.++ .+..+ ..|.+-++...++|+- .++++.+++.
T Consensus 46 ~Dgr~~yv~~rdg~vsviD~~~~~--------------~v~~i~---~G~~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 46 PDGRYLYVANRDGTVSVIDLATGK--------------VVATIK---VGGNP-RGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp T-SSEEEEEETTSEEEEEETTSSS--------------EEEEEE----SSEE-EEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEECCccc--------------EEEEEe---cCCCc-ceEEEcCCCCEEEEEecCCCceeEecc
Confidence 347789999999987666555322 111122 35544 5578888888666632 2579999999
Q ss_pred Ccccccccccc--c-------cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 118 LLTQPLKKLGF--L-------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 118 ~~l~~~~~~~~--~-------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
.+++++..++- . |.+..++.
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s--------------------------------------------------- 136 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVAS--------------------------------------------------- 136 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE----------------------------------------------------
T ss_pred ccccceeecccccccccccCCCceeEEec---------------------------------------------------
Confidence 99887653211 0 00011110
Q ss_pred cccCCceEEEEEECc--eEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEE--CCcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVIIGK--RLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGT--VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~kk--ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~--~~~y~lidl~~g~~~~l~~~~ 262 (997)
......+++.|. +|.+..+.+......+.+.....+....|..+ .+++|. .+...++|..++...-+++.+
T Consensus 137 ---~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 137 ---PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp ---SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred ---CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence 112335667775 45555555443444456656666777777743 466763 356778888877666666664
Q ss_pred CCCCCCceEEcC--CCCeEEEEeC--CeE-EEEccC---------CCccccccccCCCCCeEEEe--CcEEEEE---EC-
Q 043572 263 DVSCPPMLKLLS--KEQKVLLLVD--NVG-VFVDAH---------GQPVGGSLVFRKSPDAVGEL--SMYVVVL---RG- 322 (997)
Q Consensus 263 ~~~~~p~i~~~~--~~~e~Ll~~~--~~g-~fv~~~---------G~~~r~~i~w~~~P~~i~~~--~PYll~~---~~- 322 (997)
....+-....++ ..+-+--... .+. -.++.+ .+.. .+|.-.+.|..+..+ .||+.+- .+
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-~~I~~~G~glFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-KTIPTQGGGLFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-EEEE-SSSS--EE--TT-SEEEEE-TT-SS
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE-EEEECCCCcceeecCCCCccEEeeccCCCC
Confidence 322111122121 1111111111 111 112211 1111 134445666444443 5688876 22
Q ss_pred -CeEEEEecCCCceEEEEec
Q 043572 323 -GKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 323 -~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.|.|++..+...+.+|..
T Consensus 293 ~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp HT-EEEEECCGTEEEE-HHH
T ss_pred CceEEEEECcCcceeEEEec
Confidence 6899999999887777753
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 4e-19
Identities = 98/660 (14%), Positives = 189/660 (28%), Gaps = 183/660 (27%)
Query: 372 CYQK-VPSEEQ--IKDLLRK--KDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFD 426
Y+ + E + + K +D ++I EE++ ++ A G L LF
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIMSKDAVSGTLRLFW 69
Query: 427 L---HFEEAVDHFLHSETMQPSEVFPFIM-------RDP--NRWSLLVPRNRYWGLHPP- 473
EE V F+ E ++ + + F+M R P + R+R + +
Sbjct: 70 TLLSKQEEMVQKFV-EEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 474 ---PVPVEDVVD---NGLMAIQRA--IFLR-KAG-------VETAVDDGFLSNPPSRAEL 517
V L+ ++ A + + G ++ +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----- 181
Query: 518 LELAIRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEEL 577
I +L + ++ E + LL + D + I EL
Sbjct: 182 -----FKIF-WLNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 578 ETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGC----- 632
LL + L L VL N + + N C
Sbjct: 235 RRLLKSKPYENCL-------------L----VL-LN----VQ-NAKAWNAFNLSCKILLT 271
Query: 633 ------ADVMSG---REVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKR 683
D +S ++ S L + L+L++L + L E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--------CRPQDLPRE-- 321
Query: 684 INQLSPD--KVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEE 741
+ +P +IA + + + + + +S++ E
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT------------IIESSLNVLEPA 369
Query: 742 SGSKAFGTQMGETRSSGYGKNSIFQCPVQ---ERLQIFLQSSDLYDPEDVLDLIEGSELW 798
E R + + S+F L + D V++ + L
Sbjct: 370 -----------EYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL- 416
Query: 799 LEKAILYRKLGQETLVLQILALKLE-DSEAA------EQYCAEIGRP--DAYMQLLDMYL 849
+EK K ++ L LK++ ++E A + Y D LD Y
Sbjct: 417 VEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 850 DS----------QDGKEPMF----------KAAVR----LLHNHGESLDPLQVLET---- 881
S + +F + +R + G L+ LQ L+
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 882 LSPDMPL--QLASDTI--LRMLRARLHHHRQGQIVH-NLSRAVDIDARLARLEERSRHVQ 936
+ + P +L + + L + L + ++ L + A EE + VQ
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-----AIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-12
Identities = 92/646 (14%), Positives = 174/646 (26%), Gaps = 222/646 (34%)
Query: 76 QHVS-FLKTVSVADSPVESIFVL-DDVGKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGI 132
+ V K++ ++ ++ I + D V L LF +LL++ + + F++ +
Sbjct: 36 KDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQEEMVQKFVEEV 86
Query: 133 -----SVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187
+ I+T E S + RL N +V +
Sbjct: 87 LRINYKFLMSPIKT---------EQRQPSMMTRMYIEQRDRLY---------NDNQVFAK 128
Query: 188 EQHCRGDNVFAVIIGKRLVLIELVNGSFVIL------------------KEIQCM--DGV 227
R + R L+EL V++ ++QC +
Sbjct: 129 YNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 228 KTMVWLN-------DSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPML---------- 270
WLN ++++ D S L
Sbjct: 185 ---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS------RSDHSSNIKLRIHSIQAELR 235
Query: 271 KLLSKEQ--KVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSMYVVVLRGGKMELY 328
+LL + LL++ NV
Sbjct: 236 RLLKSKPYENCLLVLLNV-----------------------------------------Q 254
Query: 329 HKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVI-----CYQKVPSEEQIK 383
+ K A C K+L+ +V S +
Sbjct: 255 NAK---AWNAFNLS------C----------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 384 DLLRKKDFKEAISLAEELECE-GEMAKEMLS---FVHAQIG-----FLLLFD--LH---- 428
L + K L + L+C ++ +E+L+ + I L +D H
Sbjct: 296 MTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 429 -FEEAVDHFLHSETMQPSE---------VFPFIMRDPNRWSLLVPRN---RYWGLHPPPV 475
++ L ++P+E VFP + +P W
Sbjct: 354 KLTTIIESSL--NVLEPAEYRKMFDRLSVFP---PSAH-----IPTILLSLIWF-DVIKS 402
Query: 476 PVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKK 535
V VV+ + + + ++ +L L + Y + +
Sbjct: 403 DVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF 459
Query: 536 ELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYA 595
+ L+ +D Y Y + H ++N+ E + + LD FL
Sbjct: 460 DSDDLIPPYLD---QYFYSHI--GHHLKNIEHPERMTLFRMV--FLD-------FRFLEQ 505
Query: 596 -------SKGMSSKALAIWRVLARNYSSGLWK-DPAVE---NDLLD 630
+ S L + L + Y + DP E N +LD
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILD 550
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-10
Identities = 65/456 (14%), Positives = 122/456 (26%), Gaps = 145/456 (31%)
Query: 575 EELETLL---DESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLW---------KDP 622
EE++ ++ D L + SK + VL NY + + P
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQP 105
Query: 623 AVENDLLDGCADVMSG-----------REVAATEASKILEESSDEDLILQH----LGWIA 667
++ + D + R + + L E +L G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--- 162
Query: 668 DINAVLAVKVLTSEKRINQLSPDKVIAAIDSKKVEILQRYLQWL-IEDQDSDDTQFHTLY 726
+A+ V S K ++ K+ WL +++ +S +T L
Sbjct: 163 --KTWVALDVCLSYKVQCKM-DFKIF----------------WLNLKNCNSPETVLEMLQ 203
Query: 727 ALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPE 786
L +RS + +Q L+ L+S +
Sbjct: 204 KLLYQI----------------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 787 DVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLD 846
VL ++ ++ W A L + L+ R + Q+ D
Sbjct: 248 LVLLNVQNAKAW--NAF---NLSCKILL--------------------TTR---FKQVTD 279
Query: 847 MYLDSQDGKEPMFKAAVRLLHNHGESLDPL-QVLETLSPDMPLQLASDT---ILRMLRAR 902
+L + L E L + L+ D+P + T L ++
Sbjct: 280 -FLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAES 336
Query: 903 LHHHRQGQIVHNLSRAVDIDARLARLEERSRHVQINDESLCDSCHARLGTKLFAMYPDDT 962
+ LA + +HV CD + + L + P +
Sbjct: 337 IRDG------------------LATWD-NWKHVN------CDKLTTIIESSLNVLEPAEY 371
Query: 963 IVCYKCYRRQGESTSITGRDFKKDVLIKPG-----W 993
K + + S+ F I W
Sbjct: 372 ---RKMF----DRLSV----FPPSAHIPTILLSLIW 396
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 3e-09
Identities = 93/630 (14%), Positives = 175/630 (27%), Gaps = 208/630 (33%)
Query: 3 ESRPKSRTLVEPLSQFDLSHYSRSSPIRSLSISPISDCQVLIYIGTQSGSLILLSLDPTA 62
E R + + +++ + SR P L + LL L P
Sbjct: 114 EQRDRLYNDNQVFAKY---NVSRLQPYLKLRQA-------------------LLELRPAK 151
Query: 63 ATTLH-VPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLT------ 115
+ V KT D V KV + +L
Sbjct: 152 NVLIDGVL---------GSGKTWVALD-------VCLSY-KVQCKMDFKIFWLNLKNCNS 194
Query: 116 DSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGS 175
+ + L+KL + D T+ +++S L S R L K
Sbjct: 195 PETVLEMLQKL------------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--- 239
Query: 176 GIKANGVKVKEEEQHCRG----DNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMV 231
+ + NV + N +F + C K ++
Sbjct: 240 -----------SKPYENCLLVLLNVQNA---------KAWN-AF----NLSC----KILL 270
Query: 232 WLNDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVD 291
T + ++ + +L S L+ ++ LL+ +
Sbjct: 271 ---------TTRFKQVTDFLSAATTTHISLDHHS-----MTLTPDEVKSLLLKYLD--CR 314
Query: 292 AHGQPVGGSLVFRKSPDAVGELSMYVVVLRGG-------KMELYHKKSGI---CVQAVTF 341
P V +P LS+ +R G K K + I + +
Sbjct: 315 PQDLP---REVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE- 367
Query: 342 GGEGGGQCIATDEECGAGKLLV-----VATPTKVIC---YQKVPSE-EQIKDLLRKKDFK 392
E L PT ++ + + S+ + + L K
Sbjct: 368 ----------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--- 414
Query: 393 EAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHS---ETMQPSEVFP 449
SL E + KE + + + +L + ++ LH + + F
Sbjct: 415 ---SLVE------KQPKESTISIPS-----IYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 450 FIMRDPNRWSLLVPRNR-YW----GLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVD 504
L+ P Y+ G H ++++ M + R +FL D
Sbjct: 461 S-------DDLIPPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMVFL---------D 499
Query: 505 DGFLSNPPSRAELLELAIRNITRYLEVSRKKELTILVKEG-----VDTLLMYLYRALNRV 559
FL A +I L+ + + I + V+ +L +L +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---- 555
Query: 560 HDMENLAPSENSCIVE-----ELETLLDES 584
ENL S+ + ++ E E + +E+
Sbjct: 556 --EENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 3e-08
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 770 QERLQIFLQSSDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAE 829
+ R+ ++ D YD D+ ++ +EL+ E ++RK T +Q+L + + + A
Sbjct: 1037 RTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAY 1096
Query: 830 QYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLS 883
++ P + QL L + M K A+ + ++V++ +
Sbjct: 1097 EFAERCNEPAVWSQLAKAQLQ-----KGMVKEAIDSYIKADDPSSYMEVVQAAN 1145
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 99.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.32 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.24 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.17 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.02 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.88 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.8 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.79 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.73 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.73 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.71 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.71 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.69 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.68 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.66 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.6 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.52 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.5 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.49 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.48 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.44 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.43 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.4 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.39 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.38 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.37 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.36 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.35 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.35 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.33 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.29 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.29 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.27 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.27 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.24 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.18 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.17 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.16 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.16 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.12 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.11 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.07 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.02 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.02 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 97.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.98 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.88 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.83 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.82 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.8 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.79 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.75 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.74 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.72 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.67 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.66 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.65 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.62 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.62 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.61 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.6 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 96.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.55 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.55 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.55 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.52 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.52 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.51 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.48 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.47 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.45 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.42 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.41 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.38 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.34 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.32 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.21 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.19 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 96.17 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.12 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.09 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.04 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.01 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 95.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.88 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.87 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.87 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.86 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.83 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.69 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 95.69 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.57 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 95.52 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 95.46 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.3 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 95.29 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 95.29 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.28 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.11 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.07 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.04 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 94.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.89 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 94.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 94.8 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 94.79 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.76 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 94.67 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.64 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 94.61 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 94.55 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 94.5 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.38 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.36 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.3 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.18 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.14 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 94.14 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 94.13 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 94.11 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 93.93 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 93.93 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.85 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 93.79 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.69 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 93.67 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 93.64 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 93.46 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 93.43 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 93.29 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 93.27 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 93.26 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.24 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 93.18 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 93.09 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 93.03 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 92.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 92.73 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 92.72 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 92.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 92.35 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 92.33 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.29 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 92.19 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 91.98 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 91.89 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 91.85 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 91.8 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 91.7 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 91.6 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 91.34 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 91.33 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 90.9 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 90.74 | |
| 3qil_A | 125 | Clathrin heavy chain 1; clathrin trimerization dom | 90.46 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 90.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 90.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 90.28 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 90.25 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 90.11 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 89.96 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 89.93 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 89.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 89.82 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 89.64 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 89.59 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 89.42 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 89.25 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 89.15 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 88.79 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 88.53 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 88.48 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 88.37 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 88.06 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 88.05 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 87.71 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 87.5 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 87.5 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 87.31 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 87.16 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 86.99 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 86.86 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 86.73 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 86.66 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 86.42 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 86.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 86.12 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 85.98 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 85.51 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 85.16 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 85.06 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 84.88 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 84.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 84.48 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 84.05 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 83.95 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 83.85 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 83.6 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 83.34 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 83.29 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 83.03 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 82.69 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 82.11 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 82.05 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 82.01 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 81.71 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 81.69 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 81.61 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 81.45 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 81.07 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 80.62 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 80.5 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 80.27 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 80.03 |
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-15 Score=163.93 Aligned_cols=304 Identities=14% Similarity=0.210 Sum_probs=222.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...|++||++.|++... ..|||.|+.||+++++..++.+|++++|..+++.+-+.|.+.|.|++...||..-++|.
T Consensus 99 ~edLv~yL~MaRk~~ke----~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a 174 (624)
T 3lvg_A 99 WEELVKYLQMARKKARE----SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 174 (624)
T ss_dssp CTTHHHHHHTTSTTCCS----TTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT
T ss_pred HHHHHHHHHHHHHHhcc----cccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH
Confidence 46699999999987432 58999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhh------hccCchhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWI------ADINAVLAV 675 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wl------l~~~p~~~l 675 (997)
+.-.++..|++-+. +.++++.-+.... ||-...- ++.-...|+
T Consensus 175 kLAstLV~L~~yq~---------------------------AVdaArKAns~kt----WKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 175 RLASTLVHLGEYQA---------------------------AVDGARKANSTRT----WKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp TTSSSSSSCSGGGS---------------------------STTTTTTCCSSCS----HHHHTHHHHHSCTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHhcCChhH----HHHHHHHHhCchHHHHHHHhcc
Confidence 87777776665321 0112222222222 2211111 123445688
Q ss_pred hhcccccccCCCChhHHHHHhhcc-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCcc
Q 043572 676 KVLTSEKRINQLSPDKVIAAIDSK-KVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGET 754 (997)
Q Consensus 676 ~if~~~~~~~~l~~~~Vl~~L~~~-~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~ 754 (997)
.|++. .+.++ .++.+-+.. .-+.++.-||.=+. .....-.+.|+|+.+|.
T Consensus 224 niIvh---adeL~--elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYs----------------------- 274 (624)
T 3lvg_A 224 HIVVH---ADELE--ELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYS----------------------- 274 (624)
T ss_dssp HHHCC---SSCCS--GGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHH-----------------------
T ss_pred hhccc---HHHHH--HHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHH-----------------------
Confidence 88875 23332 333332221 11344666776442 22234678899999882
Q ss_pred ccCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhc---CCHHHHHH
Q 043572 755 RSSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKL---EDSEAAEQ 830 (997)
Q Consensus 755 ~~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l---~D~~~Ae~ 830 (997)
+|.++||+++|+. ++..++.++++.|++..+|.|.++||.+-.+++.|...++..- =|.+.-.+
T Consensus 275 ------------KY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkd 342 (624)
T 3lvg_A 275 ------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 342 (624)
T ss_dssp ------------SSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTT
T ss_pred ------------hcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHH
Confidence 3668899999998 6799999999999999999999999999999999998888431 12223344
Q ss_pred HHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 831 YCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 831 yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
.+.++.+.++|...+.+|++.. |.. +.+||.--.+++|+..|++.+-..-.++.+++||..+...++...+
T Consensus 343 ii~KVaN~EiyYKAi~FYL~e~----P~l--L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 343 IITKVANVELYYRAIQFYLEFK----PLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 413 (624)
T ss_dssp TGGGCSCSHHHHHHHHHHTTSC----CTT--SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHhC----hHH--HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHH
Confidence 5566678899999999999874 433 6677777778999999999999998999999999877655444333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=146.00 Aligned_cols=305 Identities=15% Similarity=0.186 Sum_probs=211.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChH
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSS 601 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~ 601 (997)
...+++||...|+... ...+||.|..+|+++++.+++..|+..+|..++..+.+.+.+.|+|++...+|.+-++|.
T Consensus 1150 yEEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~ 1225 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 1225 (1630)
T ss_pred HHHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHH
Confidence 3455667766655432 136899999999999988889999988888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhh-----ccCchhhhh
Q 043572 602 KALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIA-----DINAVLAVK 676 (997)
Q Consensus 602 ~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll-----~~~p~~~l~ 676 (997)
++..++.++++-+ .++++++.- .+.+.+.+.+.-.+ +.-...++.
T Consensus 1226 rLA~tLvkLge~q---------------------------~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQ---------------------------AAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHHHHhCCHH---------------------------HHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 9999988875321 122333332 23332111111111 111122333
Q ss_pred hcccccccCCCChhHHHHHhhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccc
Q 043572 677 VLTSEKRINQLSPDKVIAAIDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETR 755 (997)
Q Consensus 677 if~~~~~~~~l~~~~Vl~~L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~ 755 (997)
|... .+. ...++.+... ..-+.++.++|.-+.- +.....+.+.|+.+|.
T Consensus 1276 Iiv~---~de--Leeli~yYe~~G~feEAI~LlE~aL~L-eraH~gmftELaiLya------------------------ 1325 (1630)
T 1xi4_A 1276 IVVH---ADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS------------------------ 1325 (1630)
T ss_pred hhcC---HHH--HHHHHHHHHHcCCHHHHHHHHHHHhcc-ChhHhHHHHHHHHHHH------------------------
Confidence 2221 011 1233444432 2235678888887642 2334567777877773
Q ss_pred cCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC---HHHHHHH
Q 043572 756 SSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED---SEAAEQY 831 (997)
Q Consensus 756 ~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D---~~~Ae~y 831 (997)
++-.+++++.++. ++.-+..++++.|.+..+|.|.++||.+-|+++.|+..++....+ .+.-.+.
T Consensus 1326 -----------Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1326 -----------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred -----------hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 3567888888887 677899999999999999999999999999999999988854322 1122234
Q ss_pred HhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043572 832 CAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHR 907 (997)
Q Consensus 832 C~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~ 907 (997)
+.+..+.++|...+.+|+... |. ...+||.--.+.+|+..+++++-+.-.++.+++|+..+...+....+
T Consensus 1395 i~kv~n~elyykai~Fyl~~~----P~--~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vn 1464 (1630)
T 1xi4_A 1395 ITKVANVELYYRAIQFYLEFK----PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 1464 (1630)
T ss_pred hcccccHHHHHHHHHHHHhhC----hH--HHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhh
Confidence 455678899999999999652 43 36677776678999999999999888999999999987755544333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-10 Score=128.73 Aligned_cols=374 Identities=17% Similarity=0.204 Sum_probs=168.2
Q ss_pred HHHHHh-cCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHhcCCCCcccccccccCCCCcccc
Q 043572 382 IKDLLR-KKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLHSETMQPSEVFPFIMRDPNRWSL 460 (997)
Q Consensus 382 i~~Ll~-~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~~~~~Dp~~l~p~f~~~~~~~~~ 460 (997)
++.|++ .|.+++|.+.++.++.. .+-...|-.++..++|.+|.+.|.+.+ ||....
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~---------~vWs~La~A~l~~g~~~eAIdsfika~--D~~~y~------------ 65 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP---------AVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYM------------ 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHcCC--CHHHHH------------
Confidence 444554 45599999999988542 133356667888999999999998742 322110
Q ss_pred cccCCCCCCCCCCCCCcchhhcchhhHHHHHHHhhhcCcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 043572 461 LVPRNRYWGLHPPPVPVEDVVDNGLMAIQRAIFLRKAGVETAVDDGFLSNPPSRAELLELAIRNITRYLEVSRKKELTIL 540 (997)
Q Consensus 461 ~~~~~~~w~~~~~~~~~~~~i~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~L~~yL~~~r~~~~~~~ 540 (997)
.++.. ... ......+..|+...|+...
T Consensus 66 ------------------~V~~~----------ae~----------------------~g~~EeAi~yl~~ark~~~--- 92 (449)
T 1b89_A 66 ------------------EVVQA----------ANT----------------------SGNWEELVKYLQMARKKAR--- 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------HHHHH----------HHh----------------------CCCHHHHHHHHHHHHHhCc---
Confidence 00000 000 0012223446666655311
Q ss_pred HHHHHHHHHHHHHHhccCchhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCC
Q 043572 541 VKEGVDTLLMYLYRALNRVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWK 620 (997)
Q Consensus 541 ~~~~vDT~Ll~~y~~~~~~~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~ 620 (997)
...|||.|+.||.++++..++.+|++.+|......+-..+.+.|+|++...+|.+-+++.+--.++.++++-+
T Consensus 93 -~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq------ 165 (449)
T 1b89_A 93 -ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ------ 165 (449)
T ss_dssp -----------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHH------
T ss_pred -cchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHH------
Confidence 1578999999999999988999999988877777777777666666655555555544444444443332110
Q ss_pred CCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHH-h-hhhccCchhhhhhcccccccCCCChhH---HHHH
Q 043572 621 DPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHL-G-WIADINAVLAVKVLTSEKRINQLSPDK---VIAA 695 (997)
Q Consensus 621 d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~-~-wll~~~p~~~l~if~~~~~~~~l~~~~---Vl~~ 695 (997)
.++++.+... +... |+-. . .+...+-+.|...... -...|+. ++..
T Consensus 166 ---------------------~AVea~~KA~---~~~~-Wk~v~~aCv~~~ef~lA~~~~l~----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 166 ---------------------AAVDGARKAN---STRT-WKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINY 216 (449)
T ss_dssp ---------------------HHHHHHHHHT---CHHH-HHHHHHHHHHTTCHHHHHHTTTT----TTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHcC---Cchh-HHHHHHHHHHcCcHHHHHHHHHH----HHhCHhhHHHHHHH
Confidence 0111111111 1111 1110 0 0011111222111110 0022222 2233
Q ss_pred hhc-cChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHH
Q 043572 696 IDS-KKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQ 774 (997)
Q Consensus 696 L~~-~~~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~ 774 (997)
... ...+.++.|||.-+.-. ..-..+.|.|+.+|. ++-.+|++
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~-----------------------------------ky~p~k~~ 260 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS-----------------------------------KFKPQKMR 260 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH-----------------------------------TTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH-----------------------------------hcCHHHHH
Confidence 322 13356788888876432 334667788877772 46789999
Q ss_pred HHhhc-CCCCChHHHHhhccCCCchHHHHHHHHhhcchHHHHHHHHHhcCC---HHHHHHHHhhcCCchHHHHHHHHhcC
Q 043572 775 IFLQS-SDLYDPEDVLDLIEGSELWLEKAILYRKLGQETLVLQILALKLED---SEAAEQYCAEIGRPDAYMQLLDMYLD 850 (997)
Q Consensus 775 ~fL~~-s~~yd~~~~L~~~~~~~l~~e~~~Ll~klg~h~eAL~il~~~l~D---~~~Ae~yC~~~~~~~l~~~Ll~~~l~ 850 (997)
+.|+. ++..+..++++.|.+..+|.|.++||-.-++++.|+..++....+ .+.-.+.+.++.+.++|...+.+|+.
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 99997 789999999999999999999999999999999999999966544 45566778888899999999999995
Q ss_pred CCCCCchhHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHHhhHH
Q 043572 851 SQDGKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQG 909 (997)
Q Consensus 851 ~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~~~~~ 909 (997)
.. |.. ..+||.--.+.+|+..|++.+-..-.++.+++||..+...++...++.
T Consensus 341 ~~----p~~--l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnea 393 (449)
T 1b89_A 341 FK----PLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNES 393 (449)
T ss_dssp HC----GGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHH
T ss_pred cC----HHH--HHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHH
Confidence 42 433 666776667899999999999988899999999988876665544443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-07 Score=119.44 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKD 621 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d 621 (997)
..+.|-|-.+|++.++. .+.+-++ -...+.+..+...+.+.+.|.+++.||.+-|++++|+....+-... .|+.
T Consensus 1314 ~gmftELaiLyaKy~pe-klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~----a~~~ 1388 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----AWKE 1388 (1630)
T ss_pred hHHHHHHHHHHHhCCHH-HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh----hhhh
Confidence 46778899999998763 3332221 1246777888888889999999999999999999999876652211 1111
Q ss_pred CcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhcc-C
Q 043572 622 PAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSK-K 700 (997)
Q Consensus 622 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~-~ 700 (997)
+ ..-..+.+..+.+++++-+.+.++..|..--.+++.- ...+|+++++..+.+. +
T Consensus 1389 -----~-----------------~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l--~~rlD~~R~V~l~~~~~~ 1444 (1630)
T 1xi4_A 1389 -----G-----------------QFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQ 1444 (1630)
T ss_pred -----H-----------------HHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh--hhcCChHHHHHHHHHcCC
Confidence 0 1113455567889999999999999998766665532 2578999999988754 3
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcC
Q 043572 701 VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSS 780 (997)
Q Consensus 701 ~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s 780 (997)
-.+...||+.+-. .....+.+.|..+|++ .+..+.|..-+..-
T Consensus 1445 l~lik~yl~~vq~---~n~~~Vneal~el~ie----------------------------------eed~~~Lr~si~~~ 1487 (1630)
T 1xi4_A 1445 LPLVKPYLRSVQN---HNNKSVNESLNNLFIT----------------------------------EEDYQALRTSIDAY 1487 (1630)
T ss_pred hHHhHHHHHHHHH---hcchhhhHHHHHHhcC----------------------------------ccchHHHHHHHhhc
Confidence 3577899998863 2345566666665632 13456677777777
Q ss_pred CCCChHHHHhhccCCCchH---HHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCch
Q 043572 781 DLYDPEDVLDLIEGSELWL---EKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEP 857 (997)
Q Consensus 781 ~~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~ 857 (997)
..||...+..+++.+++.+ -.+++|.|.|++++|+.++- +-+++..|++.+.+.++.++-..||.+++....
T Consensus 1488 ~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k-~d~l~~dAm~~a~~S~d~e~~e~ll~~F~~~~~---- 1562 (1630)
T 1xi4_A 1488 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK---- 1562 (1630)
T ss_pred cCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHH-hccCHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----
Confidence 8899999999999988653 45889999999999999999 679999999999999999999999999998732
Q ss_pred hHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHH
Q 043572 858 MFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 858 ~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
.+.-...|-...+.+.|..||++-=-+--.+-..+|+++.++++..+
T Consensus 1563 -~E~f~a~Ly~cy~l~~pd~vle~aw~~~~~d~~mPy~i~~~~~~~~~ 1609 (1630)
T 1xi4_A 1563 -RECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK 1609 (1630)
T ss_pred -hhHHHHHHHHHhccCCchHHHHHHHHccCccccchhHHHHHHHHHHH
Confidence 23345666677899999999987644434556779999999988754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-08 Score=107.87 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhccCchhhhcccCC-CCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCC
Q 043572 543 EGVDTLLMYLYRALNRVHDMENLAPS-ENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKD 621 (997)
Q Consensus 543 ~~vDT~Ll~~y~~~~~~~~l~~ll~~-~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d 621 (997)
..+=|-|--+|+++.+ +++.+-++. -+.+++..+...+++.+.|.+|+.||.+-.+|+.|......-... .|.
T Consensus 263 mGmFTELaILYsKY~P-eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~----Aw~- 336 (624)
T 3lvg_A 263 MGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD----AWK- 336 (624)
T ss_dssp HHHHHHHHHHHHSSCT-THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH----HCC-
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh----hcc-
Confidence 4566778899999987 455544432 357888999999999999999999999999999988765532111 121
Q ss_pred CcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccC-
Q 043572 622 PAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKK- 700 (997)
Q Consensus 622 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~- 700 (997)
+. .+ -+.+.+..+.+++++-..+-++..|..-.++++.- ...+|+.+|++++.+..
T Consensus 337 h~----~F-----------------kdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL--~prlDh~RvV~~~~k~~~ 393 (624)
T 3lvg_A 337 EG----QF-----------------KDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQ 393 (624)
T ss_dssp GG----GG-----------------TTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHH--CTTCCSTTTHHHHHTTTC
T ss_pred HH----HH-----------------HHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhc--cccCChHHHHHHHHhcCC
Confidence 11 11 12334456789999999999999998877777542 35799999999998754
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcC
Q 043572 701 VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSS 780 (997)
Q Consensus 701 ~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s 780 (997)
-.+...||+.+ .+.+.......|-.+||+. +..+.|..-+..-
T Consensus 394 LpLIkpYL~~V---q~~N~~aVNeAln~L~IEE----------------------------------EDy~~LR~SId~y 436 (624)
T 3lvg_A 394 LPLVKPYLRSV---QNHNNKSVNESLNNLFITE----------------------------------EDYQALRTSIDAY 436 (624)
T ss_dssp GGGGTGGGTSC---CCSCCHHHHHHHHHHHHHT----------------------------------TCCHHHHHTTSSC
T ss_pred chhhHHHHHHH---HHhhHHHHHHHHHHHHhhh----------------------------------hhHHHHHHHHHHh
Confidence 33555677655 4555677777776777541 3456677767777
Q ss_pred CCCChHHHHhhccCCCchH---HHHHHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCch
Q 043572 781 DLYDPEDVLDLIEGSELWL---EKAILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEP 857 (997)
Q Consensus 781 ~~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~ 857 (997)
.+||.-.+-.+++.+.|.+ -.++||.|.+++++|+.+.- +-+.|..|++++...++.++-..||+++++..+
T Consensus 437 dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K-kDklykDAietAa~S~~~elaeeLL~yFv~~g~---- 511 (624)
T 3lvg_A 437 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK---- 511 (624)
T ss_dssp CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS-TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCS----
T ss_pred ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 8999999999999998754 46899999999999999887 557899999999999999999999999997643
Q ss_pred hHHHHHHHHHhccCCCCHHHHhhhCCCCcchhhhHHHHHHHHHHHHHH
Q 043572 858 MFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 858 ~~~~~~~lL~~~~~~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
.+.-...|-...+.+.|..||++-=-+--.+-..+|+++++++++.+
T Consensus 512 -~EcF~a~LytCYdLlrpDvVlElaW~~~l~D~~mPY~Iq~~re~~~k 558 (624)
T 3lvg_A 512 -RECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK 558 (624)
T ss_dssp -THHHHHHHHHTSSSSSCHHHHHHHHHSCSSSCCCCSSTTTTTTHHHH
T ss_pred -hHHHHHHHHHHhhccChHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 23345666678899999999987432222344567777888877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.02 Score=70.82 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=93.2
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec--ccCcEEEE
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD--DVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~--~~~~lLv~ 106 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ...+.. -...+|..+...| +...++++
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-------------NFTLTT---GQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-------------SEEEEC---CCTTCCCEEEECCSTTCCEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------eeEEec---CCCCCEEEEEEEECCCCCEEEEE
Confidence 568888864 45799999999999998864331 011111 1336889998888 77756665
Q ss_pred ecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.||+|.+|++..-.++..+. ....++.++..+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---------------------------------------------- 238 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP---------------------------------------------- 238 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS----------------------------------------------
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC----------------------------------------------
Confidence 557899999987644433221 122344444322
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC----EEEEEECCcEEEEEecCC
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND----SIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~----~l~vg~~~~y~lidl~~g 253 (997)
++ ..++++. ...|.+|....+. ..+.+.. .+.+.+++|..+ .+..|...+..++++.++
T Consensus 239 ------~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 239 ------TL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp ------SS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred ------CC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 11 1344444 3568887766542 3333333 356788988854 377778888888887644
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.003 Score=71.40 Aligned_cols=237 Identities=10% Similarity=0.046 Sum_probs=138.4
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.+.+++..+++++.|+.+|.+..|....... ...... -...+|..+...|+.+.++++-.||.|
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~--------------~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSV--------------SALAET--DESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCE--------------EEEEEC--CTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcE--------------eEeeec--CCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 4567787788999999999999998865431 111110 145689999999988877776668999
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
.+|++..-+.+..+. ....+..++.+
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~----------------------------------------------------- 185 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSWN----------------------------------------------------- 185 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEE-----------------------------------------------------
T ss_pred EEEECcCCeEEEEecCCCCceEEEEEC-----------------------------------------------------
Confidence 999987654332221 11223333321
Q ss_pred CCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 192 RGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 192 ~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
+. .++.+ ....|.+|....... ....+. ....+.++.|.. ..++.|.. +...++|+.++.....+......
T Consensus 186 -~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~- 261 (401)
T 4aez_A 186 -RH-VLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA- 261 (401)
T ss_dssp -TT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC-
T ss_pred -CC-EEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce-
Confidence 11 23333 344577777653211 112221 345789999974 45777765 67889999876544434322111
Q ss_pred CCceEEcCCCCeEEEEe----CCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEE---CCeEEEEecCCCceE
Q 043572 267 PPMLKLLSKEQKVLLLV----DNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR---GGKMELYHKKSGICV 336 (997)
Q Consensus 267 ~p~i~~~~~~~e~Ll~~----~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~---~~~ieI~~~~~~~lv 336 (997)
-..+..-+.++.++++. |+...+.|. .|.+.+ ++.-......+.+. .+++++.. ++.|.|+++.++...
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN-TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE-EEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 11222223333455442 556666675 344332 23323334455553 56777764 689999999998777
Q ss_pred EEEecCC
Q 043572 337 QAVTFGG 343 (997)
Q Consensus 337 Q~i~~~~ 343 (997)
+...+++
T Consensus 341 ~~~~~~~ 347 (401)
T 4aez_A 341 KQVDIPA 347 (401)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 7665543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0094 Score=65.41 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=135.6
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. -...+|..+...|+.+.++.+-.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--------------LGTLD---GHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--------------hhhhh---hcCCcEEEEEEcCCCCEEEEEeC
Confidence 3578888864 56899999999999998764321 11111 15668999999998886766566
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|++|++|++...+.+........+..++..+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------- 125 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSP------------------------------------------------- 125 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECT-------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEcc-------------------------------------------------
Confidence 8899999998765444333233344444322
Q ss_pred cccCCceEEEEEEC------ceEEEEEEeCCe----EEE-----EEeEec-C--CcceEEEEeC--CEEEEEEC-CcEEE
Q 043572 189 QHCRGDNVFAVIIG------KRLVLIELVNGS----FVI-----LKEIQC-M--DGVKTMVWLN--DSIIVGTV-NGYSL 247 (997)
Q Consensus 189 ~~~~~~~~l~Va~k------kki~i~~~~~~~----~~~-----~kei~~-~--~~~~~l~~~~--~~l~vg~~-~~y~l 247 (997)
++ ..++++.. ..|.+|.+..+. +.. ...+.. . ..+.+++|.. +.+++|.. ....+
T Consensus 126 ---~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 126 ---CG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ---TS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ---CC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 11 23444444 467788776441 111 111111 1 1678888873 46777766 46889
Q ss_pred EEecC-CcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE
Q 043572 248 FSCVT-GQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR 321 (997)
Q Consensus 248 idl~~-g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~ 321 (997)
+|+.+ +.....+.... .......+..++.+|+ +. |+...+.|.. |...+ .+.-......+.+. ..++++..
T Consensus 202 ~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK-KYETDCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp EETTTTTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCcEeEEEEecCC--CceeEEEECCCCCEEEEecCCceEEEEECCCCceee-eecCCCCceeEEecCCCceEEEee
Confidence 99986 44333333221 1111223332334444 43 4566666653 33322 22222222333332 34666554
Q ss_pred C-C--------------eEEEEecCCCceEEEEecC
Q 043572 322 G-G--------------KMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 322 ~-~--------------~ieI~~~~~~~lvQ~i~~~ 342 (997)
. + .+.+++..++..++.+.-.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 3 2 6888899899888887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00068 Score=76.71 Aligned_cols=202 Identities=14% Similarity=0.193 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhccCchhhhcccC-CCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCC
Q 043572 544 GVDTLLMYLYRALNRVHDMENLAP-SENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDP 622 (997)
Q Consensus 544 ~vDT~Ll~~y~~~~~~~~l~~ll~-~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~ 622 (997)
.+=|-|-.+|++.++. .+.+-++ --+.+.+..+...+.+...|.+++.||...++|+.|..+..+-.. ..|..
T Consensus 242 ~~ftel~il~~ky~p~-k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~----~a~~~- 315 (449)
T 1b89_A 242 GMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT----DAWKE- 315 (449)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT----TTCCH-
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh----hhhhh-
Confidence 4456678889998753 3332221 136789999999999999999999999999999999987765211 11211
Q ss_pred cccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHhhccC-h
Q 043572 623 AVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAIDSKK-V 701 (997)
Q Consensus 623 ~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L~~~~-~ 701 (997)
+ ...+.+.+..+.+++++-+.+-++..|..--.+++.- ...+|+++++.++.... -
T Consensus 316 ----~-----------------~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l--~~~ld~~r~v~~~~~~~~l 372 (449)
T 1b89_A 316 ----G-----------------QFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL--SPRLDHTRAVNYFSKVKQL 372 (449)
T ss_dssp ----H-----------------HHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHH--GGGCCHHHHHHHHHHTTCT
T ss_pred ----H-----------------HHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHH--HhccCcHHHHHHHHHcCCc
Confidence 1 1123344456789999999999999998755555432 35799999999987643 3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhcCC
Q 043572 702 EILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSD 781 (997)
Q Consensus 702 ~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~s~ 781 (997)
.+...||+.+-. .+...+...|-.+||+ ++..+.|..-+..-.
T Consensus 373 ~l~~~yl~~v~~---~n~~~vnealn~l~ie----------------------------------eed~~~lr~si~~~~ 415 (449)
T 1b89_A 373 PLVKPYLRSVQN---HNNKSVNESLNNLFIT----------------------------------EEDYQALRTSIDAYD 415 (449)
T ss_dssp TTTHHHHHHHHT---TCCHHHHHHHHHHHHH----------------------------------TTCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHHh----------------------------------hhhHHHHHHHHHHhc
Confidence 577899987743 4456777777777754 145677777788889
Q ss_pred CCChHHHHhhccCCCchH---HHHHHHHhhcch
Q 043572 782 LYDPEDVLDLIEGSELWL---EKAILYRKLGQE 811 (997)
Q Consensus 782 ~yd~~~~L~~~~~~~l~~---e~~~Ll~klg~h 811 (997)
+||.-.+-.+++.+.|.+ -.++||.|.+++
T Consensus 416 nfd~~~l~~~le~h~l~~~r~iaa~~~~~~~~~ 448 (449)
T 1b89_A 416 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRW 448 (449)
T ss_dssp CSCHHHHHHHHTTCSSHHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHhcCchHHHHHHHHHHHHhccCC
Confidence 999999999999998755 358888887765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.003 Score=69.43 Aligned_cols=244 Identities=10% Similarity=0.041 Sum_probs=139.6
Q ss_pred ceeeeeEEeecC-----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEE
Q 043572 30 RSLSISPISDCQ-----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVL 104 (997)
Q Consensus 30 ~~~~I~ci~~~~-----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lL 104 (997)
....|+|++... +.|+.|+.+|.+..|.+..... .....+. -...+|..+...|+.+.++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------TIPKAQQ---MHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------EEEEEEE---ECSSCEEEEEECTTSSEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------eeEEEec---cccCCEEEEEECcCCCEEE
Confidence 346899999763 5799999999999999975321 0111111 2567899999999888777
Q ss_pred EEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 105 LLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
++-.||+|.+|++..-+..........++.++..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------------- 138 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-------------------------------------------- 138 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEEC--------------------------------------------
T ss_pred EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeC--------------------------------------------
Confidence 756689999999876543322222223333333110
Q ss_pred hhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 185 KEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
.++ ..++++. ...|.+|.+..+ .....+..+..+.++.+.++.++++.. ....++|+.++.........
T Consensus 139 ------~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 209 (368)
T 3mmy_A 139 ------PNY-SCVMTGSWDKTLKFWDTRSS--NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209 (368)
T ss_dssp ------SSC-EEEEEEETTSEEEEECSSCS--SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCC
T ss_pred ------CCC-CEEEEccCCCcEEEEECCCC--cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccc
Confidence 011 2344444 456778776554 233445567778888889888777744 57888998754322111111
Q ss_pred CCCCCC-ceEEcCCC----CeEEEEe-CCeEEEEccCCCcc-cc--ccccCC-------------CCCeEEEe--CcEEE
Q 043572 263 DVSCPP-MLKLLSKE----QKVLLLV-DNVGVFVDAHGQPV-GG--SLVFRK-------------SPDAVGEL--SMYVV 318 (997)
Q Consensus 263 ~~~~~p-~i~~~~~~----~e~Ll~~-~~~g~fv~~~G~~~-r~--~i~w~~-------------~P~~i~~~--~PYll 318 (997)
...... .+...... ..++.+. |+...+.+...... .. ++.... ....+++. ..|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 111111 22222111 1144444 44455555543211 11 222211 23344443 33777
Q ss_pred EEE-CCeEEEEecCCCceEEEEec
Q 043572 319 VLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 319 ~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
+.. ++.|.|+++.++..++++.-
T Consensus 290 s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp EEETTSCEEEEETTTTEEEEECCC
T ss_pred EEccCCeEEEEECCCCcEEEEecC
Confidence 665 67899999999999888754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0037 Score=69.92 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=142.8
Q ss_pred ceeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc----c---Cc
Q 043572 30 RSLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD----V---GK 102 (997)
Q Consensus 30 ~~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~----~---~~ 102 (997)
....|+|++...+.|+.|+.+|.+..|.......... ......+. -...+|..+...|+ . ..
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~---~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP--------KDKSYSHF---VHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG--------GGGEEEEE---CCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC--------CCcceEEe---cCCCcEEEEEEecccccCCccccE
Confidence 3457899998888999999999999999876542100 00111111 25678999999998 6 65
Q ss_pred EEEEecCCeEEEeecCcccc-----ccccccc------cceEEEEeecccCCccccccccccccccccccCCcccchhhh
Q 043572 103 VLLLFCDQCLFLTDSLLTQP-----LKKLGFL------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQ 171 (997)
Q Consensus 103 lLv~l~d~~l~~~~l~~l~~-----~~~~~~~------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 171 (997)
++.+-.|+.|++|++..-.. ...+... ..+..++..+..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------ 133 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN------------------------------ 133 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------------------------------
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc------------------------------
Confidence 55545588999999876543 2222111 233333332000
Q ss_pred hccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeC------C-eEE--EEEeEe--------cCCcceEEEEe
Q 043572 172 KFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVN------G-SFV--ILKEIQ--------CMDGVKTMVWL 233 (997)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~------~-~~~--~~kei~--------~~~~~~~l~~~ 233 (997)
..++...++++. ...|.+|.+.. + ... ....+. ....+.++.|.
T Consensus 134 ------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 134 ------------------DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp ----------------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred ------------------CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence 001223144444 45688888876 3 111 111221 24567999998
Q ss_pred CC-EEEEEEC-CcEEEEEecCCcceeeecCC-CC---CCCCceEEcCCCCeEEEE-e-C---CeEEEEcc-CCCcccccc
Q 043572 234 ND-SIIVGTV-NGYSLFSCVTGQSGVIFTLP-DV---SCPPMLKLLSKEQKVLLL-V-D---NVGVFVDA-HGQPVGGSL 301 (997)
Q Consensus 234 ~~-~l~vg~~-~~y~lidl~~g~~~~l~~~~-~~---~~~p~i~~~~~~~e~Ll~-~-~---~~g~fv~~-~G~~~r~~i 301 (997)
.+ .+++|.. ....++|+.++.....+... +. ........+..++.+|++ . + +...+.|. .|.+.+ .+
T Consensus 196 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~ 274 (397)
T 1sq9_A 196 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SL 274 (397)
T ss_dssp TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EE
T ss_pred CCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-ee
Confidence 54 6666654 46888999877655555430 01 111222233323344444 3 3 35555664 444332 12
Q ss_pred c--------------cCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEe
Q 043572 302 V--------------FRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 302 ~--------------w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~ 340 (997)
. -......+.+. ..|+++.. ++.|.|+++.++..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 1 12233455554 55777665 5789999999999999987
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0084 Score=74.32 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=141.7
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. ....+|..+...|+.+.++++-.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------------~~~~~---~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------------VRSIQ---VTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCSSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--------------EEEEe---cCCCcEEEEEEeCCCCEEEEEeC
Confidence 4578888865 66899999999999998764321 11111 25678999999999997777666
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
||.|.+|++..-+.+..+. ....++.++..+
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------------------ 107 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP------------------------------------------------ 107 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECS------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEeC------------------------------------------------
Confidence 8899999987655433222 122244444322
Q ss_pred ccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 188 EQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 188 ~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..++++.. ..|.+|.+..+. ...+.+. ....+.++.|.. +.++.|.. ....++|+.++.....+..
T Consensus 108 ----~~-~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 108 ----TK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp ----SS-SEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred ----CC-CEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 11 13455544 468888887651 2222222 345689999974 35777765 4688899877655444443
Q ss_pred CCCCCCCceEEcC-CCCeEEEE-e-CCeEEEEccC-CCccccccccCCCC-CeEEEe--CcEEEEEE-CCeEEEEecCCC
Q 043572 262 PDVSCPPMLKLLS-KEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSP-DAVGEL--SMYVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 262 ~~~~~~p~i~~~~-~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P-~~i~~~--~PYll~~~-~~~ieI~~~~~~ 333 (997)
.....-..+...+ +++.++++ . ++...+.+.. |.+.+ ++.....+ ..+++. .+++++.. ++.|.|+++.++
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 2211111222222 13344444 3 3455555643 33221 23222222 233433 34777666 578999999999
Q ss_pred ceEEEEecCC
Q 043572 334 ICVQAVTFGG 343 (997)
Q Consensus 334 ~lvQ~i~~~~ 343 (997)
..++++....
T Consensus 261 ~~~~~~~~~~ 270 (814)
T 3mkq_A 261 KVEKTLNVGL 270 (814)
T ss_dssp SEEEEECCSS
T ss_pred cEEEEeecCC
Confidence 9988886543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.022 Score=61.58 Aligned_cols=241 Identities=10% Similarity=0.067 Sum_probs=136.0
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+ +|.+..|.+....... ........ -...+|..+...|+.+.++++-.|
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--------~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d 118 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--------PVSQLDCL----NRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--------CSEEEECS----CTTSBEEEEEECTTSSEEEEEESS
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--------eeeccccc----CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 467887754 45677887 9999999987543210 00111100 145689999999988877775668
Q ss_pred CeEEEeecCcccccc--ccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 QCLFLTDSLLTQPLK--KLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~--~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+.|.+|++..-++.. ... ....++.++..+
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------------------------------- 151 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISP----------------------------------------------- 151 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECT-----------------------------------------------
T ss_pred CcEEEEECCCCCcceeeecccCCCceEEEEECC-----------------------------------------------
Confidence 999999987643211 111 111233333221
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..++++. ...|.+|....++ ..+.+. ....+.++.|.. +.++.|.. ....++|+.++.....+..
T Consensus 152 -----~~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 223 (337)
T 1gxr_A 152 -----DS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223 (337)
T ss_dssp -----TS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -----CC-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC
Confidence 11 2344444 3567888776543 233333 245678999973 46777765 4678899988876555543
Q ss_pred CCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceE
Q 043572 262 PDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICV 336 (997)
Q Consensus 262 ~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lv 336 (997)
.. ......+ +++..++++. ++...+++..+........-...+..+.+. ..++++.. ++.|.|+++.++..+
T Consensus 224 ~~---~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 224 TS---QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SS---CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CC---ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 22 1222233 3333444444 445555665432211111112334455554 45777665 578999999999888
Q ss_pred EEEecCC
Q 043572 337 QAVTFGG 343 (997)
Q Consensus 337 Q~i~~~~ 343 (997)
.......
T Consensus 301 ~~~~~~~ 307 (337)
T 1gxr_A 301 FQSKESS 307 (337)
T ss_dssp EEEECSS
T ss_pred EEecCCC
Confidence 6665443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.013 Score=67.22 Aligned_cols=239 Identities=10% Similarity=-0.011 Sum_probs=137.7
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
-++|+...++.|+.|+.||.+..|....... ...++ -...+|..+...|+. .++.+-.||+|
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~--------------~~~~~---~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKF--------------LLQLS---GHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcE--------------EEEEe---CCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3688888899999999999999998764321 11111 156689999987766 56665678999
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHC 191 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 191 (997)
.+|++..-+++.... -...++.++..+..
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-------------------------------------------------- 215 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-------------------------------------------------- 215 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESS--------------------------------------------------
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCC--------------------------------------------------
Confidence 999987654433221 12233333332100
Q ss_pred CCceEEEEEE-CceEEEEEEeCCeEE---------------------EEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEE
Q 043572 192 RGDNVFAVII-GKRLVLIELVNGSFV---------------------ILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSL 247 (997)
Q Consensus 192 ~~~~~l~Va~-kkki~i~~~~~~~~~---------------------~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~l 247 (997)
++ ..++++. ...|.+|........ ....+. ....+.++...++.++.|.. ....+
T Consensus 216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 11 2233333 345667666543211 011111 22356778888888888864 57889
Q ss_pred EEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEcc-CCCcccccccc-CCCCCeEEEeCcEEEEEE-C
Q 043572 248 FSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGELSMYVVVLR-G 322 (997)
Q Consensus 248 idl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~~PYll~~~-~ 322 (997)
+|+.++.....+.... .......+ ++++.++.+. |+...+.|. .|.+.+ ++.- ......+.+...++++.. +
T Consensus 295 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~s~s~d 371 (464)
T 3v7d_B 295 WDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-TLQGHTALVGLLRLSDKFLVSAAAD 371 (464)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECSSEEEEEETT
T ss_pred EECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-EEeCCCCcEEEEEEcCCEEEEEeCC
Confidence 9998776544443211 11112223 3333444443 455556664 454432 2221 223446677767887765 5
Q ss_pred CeEEEEecCCCceEEEEecCC
Q 043572 323 GKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 323 ~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+.|.|.++.++..........
T Consensus 372 g~v~vwd~~~~~~~~~~~~~~ 392 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYHHTN 392 (464)
T ss_dssp SEEEEEETTTCCEEEEEECTT
T ss_pred CcEEEEECCCCceeeeecCCC
Confidence 789999999988776665443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0094 Score=64.52 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=101.2
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ...... -...+|..+...|+.+.++++-.
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------------~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------------IKAELT---SSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------------EEEEEE---CSSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------------eeeecc---cCCCceEEEEECCCCCEEEEEeC
Confidence 3578888865 557999999999999988754310 111111 14568999999998886777556
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++...++...+.. ...++.++..+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------------------ 193 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN------------------------------------------------ 193 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECC------------------------------------------------
Confidence 88999999977554433221 22344444322
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVI 258 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l 258 (997)
++ ..++++. ...|.+|....++ ....+..+..+.++.|. ++.+++|.. ....++|+.++....+
T Consensus 194 ----~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 194 ----DG-TKLWTGGLDNTVRSWDLREGR--QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp ----TS-SEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ----CC-CEEEEEecCCcEEEEECCCCc--eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 11 1344444 4467787776543 33445567788999997 346777764 5688999987765443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.71 E-value=0.027 Score=60.62 Aligned_cols=236 Identities=13% Similarity=0.062 Sum_probs=134.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...+. -...+|..+...|+.+.++.+-.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--------------~~~~~---~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------------EKTIS---GHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--------------chhhc---cCCCceEEEEEcCCCCEEEEECC
Confidence 3578888864 56799999999999998754321 11111 25668999999999886766566
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.|.+|++..-.++..+.. ...+..++..+
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------ 117 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------------------------------------------ 117 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECS------------------------------------------------
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC------------------------------------------------
Confidence 88999999876544322211 11122222221
Q ss_pred ccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++.+ ....|.+|....+. ..+.+.. ...+.++.|.. ..++.|.. ....++|+.+++....+...
T Consensus 118 ----~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 118 ----QSN-LIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp ----SSS-EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred ----CCC-EEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 111 23333 44567888776543 2233332 34678898874 45777754 56889999877654433322
Q ss_pred CCCCCC-ceEEcCCCCeEEEE-e-CCeEEEEccC-CCccccccccCC---CCCeEEEe---CcEEEEEE-CCeEEEEecC
Q 043572 263 DVSCPP-MLKLLSKEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRK---SPDAVGEL---SMYVVVLR-GGKMELYHKK 331 (997)
Q Consensus 263 ~~~~~p-~i~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~---~P~~i~~~---~PYll~~~-~~~ieI~~~~ 331 (997)
. ..+ ....+..++.+|++ . |+...+.|.. |...+ .+.-.. ......+. ..|+++-. ++.|.|.++.
T Consensus 191 ~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 191 D--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp S--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred C--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 1 112 12334434455554 3 4556666653 33221 111110 11112222 33555544 5789999999
Q ss_pred CCceEEEEec
Q 043572 332 SGICVQAVTF 341 (997)
Q Consensus 332 ~~~lvQ~i~~ 341 (997)
++.+++++.-
T Consensus 268 ~~~~~~~~~~ 277 (312)
T 4ery_A 268 TKEIVQKLQG 277 (312)
T ss_dssp TCCEEEEECC
T ss_pred Cchhhhhhhc
Confidence 9999998854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.012 Score=67.26 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=136.2
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.++|+...++.|+.|+.+|.+..|.......-. .+.. ...+|..+..- .+.++.+-.||+|
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~-------------~~~~----h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-------------TLVG----HTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEEE-------------ECCC----CSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEEE-------------EEcC----CCCCEEEEEec--CCEEEEEeCCCeE
Confidence 477888888888888888888888886665210 0001 23455555554 3456666677777
Q ss_pred EEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc-cc-cCCccchhccc
Q 043572 113 FLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG-IK-ANGVKVKEEEQ 189 (997)
Q Consensus 113 ~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~-~~g~~~~~~~~ 189 (997)
++|++..-+++..+. ....+..++.+... ++.+. .....+++...++. +. ..|-.......
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------l~s~s---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLHEKR-------VVSGS---------RDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTE-------EEEEE---------TTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEecCCE-------EEEEe---------CCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 777766554433221 12223333333211 00000 00000000000000 00 00000000000
Q ss_pred ccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 190 HCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 190 ~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
..++.. ++++. ...|.+|....+. ..+++. ....+.++.|.+..++.|.. +...++|+.++.....+....
T Consensus 246 ~~~~~~-l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 319 (445)
T 2ovr_B 246 QYDGRR-VVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--- 319 (445)
T ss_dssp EECSSC-EEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC---
T ss_pred EECCCE-EEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---
Confidence 001222 34443 4557777766542 333333 23567999998888888864 578899998886554443221
Q ss_pred CCceEEcC-CCCeEEEEe-CCeEEEEcc-CCCccccccc----cCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 267 PPMLKLLS-KEQKVLLLV-DNVGVFVDA-HGQPVGGSLV----FRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 267 ~p~i~~~~-~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~----w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
..+..+. +++.++.+. |+...+.|. .|.+.+ ++. -......+.+...|+++.+ ++.|.|+++.+++.+++
T Consensus 320 -~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 320 -SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ-TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp -SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE-EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEE-EEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeee
Confidence 2222221 233444443 455666665 455432 222 2233456777777888766 67899999999999998
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 398 ~~ 399 (445)
T 2ovr_B 398 LV 399 (445)
T ss_dssp EE
T ss_pred ee
Confidence 84
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.023 Score=64.95 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=82.1
Q ss_pred EEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 197 FAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 197 l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
++++. ...|.+|....+... +.+. ....+.++.|.++.++.|.. ....++|+.++.....+.... ..+..+
T Consensus 212 l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~ 285 (445)
T 2ovr_B 212 VVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSL 285 (445)
T ss_dssp EEEEETTSEEEEEESSSCCEE--EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEE--EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC----CceEEE
Confidence 44444 445778777654322 2222 24567899998888888865 568899998776544443211 122222
Q ss_pred C-CCCeEEEEe-CCeEEEEcc-CCCccccccc-cCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 274 S-KEQKVLLLV-DNVGVFVDA-HGQPVGGSLV-FRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 274 ~-~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~-w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
. ++..++.+. |+...+.|. .|.+.+ ++. -......+.+...++++.. ++.|.|+++.++..++++..+
T Consensus 286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 286 QFDGIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp EECSSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred EECCCEEEEEeCCCeEEEEECCCCCEEE-EEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 1 333444443 455556664 444432 111 1223345666777877665 678999999999999988753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.032 Score=60.15 Aligned_cols=240 Identities=10% Similarity=0.020 Sum_probs=136.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... ...+. ....+|..+...|+.+.++.+-.|
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------------VRSIQ---VTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--------------eEEee---ccCCcEEEEEEeCCCCEEEEECCC
Confidence 468888864 66799999999999998864321 11111 256789999999999977776678
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
++|++|++..-+++..+.. ...|..++..+
T Consensus 77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------- 107 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP------------------------------------------------- 107 (304)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECS-------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-------------------------------------------------
Confidence 8999999876544322211 12244444322
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++ ..++.+. .+.|.+|.+..+. ...+.+. -...+.+++|.. ..++.|.. ....+.|+.++.....+...
T Consensus 108 ---~~-~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~ 182 (304)
T 2ynn_A 108 ---TK-PYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (304)
T ss_dssp ---SS-SEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred ---CC-CEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence 11 1234443 4568888876541 1112222 234678999973 34666654 56888998765433222222
Q ss_pred CCCCCCceEEcC-CCCeEEEE-e-CCeEEEEccC-CCccccccccCCCCC-eEEEe--CcEEEEEE-CCeEEEEecCCCc
Q 043572 263 DVSCPPMLKLLS-KEQKVLLL-V-DNVGVFVDAH-GQPVGGSLVFRKSPD-AVGEL--SMYVVVLR-GGKMELYHKKSGI 334 (997)
Q Consensus 263 ~~~~~p~i~~~~-~~~e~Ll~-~-~~~g~fv~~~-G~~~r~~i~w~~~P~-~i~~~--~PYll~~~-~~~ieI~~~~~~~ 334 (997)
....-..+...+ .++.+|++ . |+...+.|.. |.... ++.-...+. .+++. .++|+.-. ++.|.|.++.++.
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA-TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce-eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 111111122222 23345544 3 4555556643 32221 222222222 23332 35676655 5789999999999
Q ss_pred eEEEEecCC
Q 043572 335 CVQAVTFGG 343 (997)
Q Consensus 335 lvQ~i~~~~ 343 (997)
+++++....
T Consensus 262 ~~~~~~~~~ 270 (304)
T 2ynn_A 262 VEKTLNVGL 270 (304)
T ss_dssp EEEEECCSS
T ss_pred eeeeccCCC
Confidence 999986543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0037 Score=70.59 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=102.7
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|.|++..++.|+.|+.+|.+..|.+..... ...... -...+|..+...|+.+.++++-.|+
T Consensus 176 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------QIGTLQ---GHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------EEEEEE---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------eeeEEc---CCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 457889998888999999999999998874321 111111 1566899999999888666655689
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
.|++|++....+..... ....++.++..+
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-------------------------------------------------- 269 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCP-------------------------------------------------- 269 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECT--------------------------------------------------
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECC--------------------------------------------------
Confidence 99999997755433221 112233333322
Q ss_pred ccCCceEEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE---CCcEEEEEecCCcceeeec
Q 043572 190 HCRGDNVFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT---VNGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 190 ~~~~~~~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~---~~~y~lidl~~g~~~~l~~ 260 (997)
++...++.+. .+.|.+|....+ ...+.+.....+.++.|.. ..++++. .....++|+.++.....+.
T Consensus 270 --~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~ 344 (401)
T 4aez_A 270 --WQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD 344 (401)
T ss_dssp --TSTTEEEEECCTTTCEEEEEETTTC--CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred --CCCCEEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence 1112333332 567888877654 3334455677889999974 4466643 5678899998776555543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0086 Score=65.24 Aligned_cols=242 Identities=13% Similarity=0.033 Sum_probs=136.2
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEEEe
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv~l 107 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ....... -...+|..+...|+.+ .++++-
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQSL----RYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEEE----ECSSCEEEEEEEESSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceeee----ecCCceEEEEECCCCCcEEEEEc
Confidence 3567887754 668999999999999998754310 0011111 1567899999999877 677766
Q ss_pred cCCeEEEeec-Cccccccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 CDQCLFLTDS-LLTQPLKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~d~~l~~~~l-~~l~~~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
.||.|++|++ ..-....-.. ....++.++..+
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--------------------------------------------- 111 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--------------------------------------------- 111 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET---------------------------------------------
T ss_pred CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC---------------------------------------------
Confidence 7899999998 6543211011 122233333321
Q ss_pred hhcccccCCceEEEEE-ECceEEEEEEeC---Ce----EEEEEeEecCCcceEEEEeCCEEEEEECC-cEEEEEecC-Cc
Q 043572 185 KEEEQHCRGDNVFAVI-IGKRLVLIELVN---GS----FVILKEIQCMDGVKTMVWLNDSIIVGTVN-GYSLFSCVT-GQ 254 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va-~kkki~i~~~~~---~~----~~~~kei~~~~~~~~l~~~~~~l~vg~~~-~y~lidl~~-g~ 254 (997)
+ ..++.+ ..+.|.+|.+.. +. ....+.+..+..+.++.|.++.+++|... ...++|+.+ +.
T Consensus 112 --------~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 112 --------D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp --------T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT
T ss_pred --------C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc
Confidence 1 123333 344567766543 00 22233444667889999999888888665 889999987 54
Q ss_pred ceee-ecCCCCCCCCceEEc-C-CCCeEEEEeCC-eEEEEccCCC--c--ccc--ccccCC----------CCCeEEEe-
Q 043572 255 SGVI-FTLPDVSCPPMLKLL-S-KEQKVLLLVDN-VGVFVDAHGQ--P--VGG--SLVFRK----------SPDAVGEL- 313 (997)
Q Consensus 255 ~~~l-~~~~~~~~~p~i~~~-~-~~~e~Ll~~~~-~g~fv~~~G~--~--~r~--~i~w~~----------~P~~i~~~- 313 (997)
.... ..... ........+ + ++..++.+..+ ...+.+.+.. . .+. .+.-.. ....+.+.
T Consensus 183 ~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 183 DNGTIEESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CCCEEEECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred ccceeeecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC
Confidence 3211 11111 111222233 3 34345555443 4444333222 1 011 221111 23344443
Q ss_pred -CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 314 -SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 314 -~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
..||++.. ++.|.|+++.++..+.++.-
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred CCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 45777665 56899999999998888654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.062 Score=59.67 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=141.6
Q ss_pred eeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEE
Q 043572 31 SLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~ 106 (997)
...|+|++... +.|+.|+.+|.+..|........ ....... ...+|..+...| +.+.++.+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~----h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-----------SFIQGMG----PGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-----------EEECCCS----TTCBEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-----------eeeecCC----cCCceeEEEeCCCCCCEEEEE
Confidence 35788988653 57999999999999998754320 0111001 456899999999 55655555
Q ss_pred ecCCeEEEeecCccccccccccc----cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 107 FCDQCLFLTDSLLTQPLKKLGFL----KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~~~----kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
-.|+.|++|++.. ......... ..+..++..+
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------- 173 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV------------------------------------------- 173 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET-------------------------------------------
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC-------------------------------------------
Confidence 5688999999874 111111111 1233333322
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC---EEEEEEC-CcEEEEEecCCc---
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND---SIIVGTV-NGYSLFSCVTGQ--- 254 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~---~l~vg~~-~~y~lidl~~g~--- 254 (997)
++. .++++. ...|.+|.........++. ....+.+++|..+ .++.|.. ....++|+.++.
T Consensus 174 ---------~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 241 (383)
T 3ei3_B 174 ---------SRQ-MLATGDSTGRLLLLGLDGHEIFKEKL--HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN 241 (383)
T ss_dssp ---------TTT-EEEEEETTSEEEEEETTSCEEEEEEC--SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred ---------CCC-EEEEECCCCCEEEEECCCCEEEEecc--CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc
Confidence 111 344444 3567788775433333321 3457899999853 5666654 568899998733
Q ss_pred -ceeeecCCCCCCCCceEEcCC-CCeEEEE-e-CCeEEEEcc-CCCccccccc------cC-CCCCeEEEe--CcEEEE-
Q 043572 255 -SGVIFTLPDVSCPPMLKLLSK-EQKVLLL-V-DNVGVFVDA-HGQPVGGSLV------FR-KSPDAVGEL--SMYVVV- 319 (997)
Q Consensus 255 -~~~l~~~~~~~~~p~i~~~~~-~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~------w~-~~P~~i~~~--~PYll~- 319 (997)
....+... .......+.. ++.+|++ . |+...+.|. .|...+ ++. +. ..+....+. .+++.+
T Consensus 242 ~~~~~~~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 242 SYIAEMPHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD-QIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp CEEEEEECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS-EEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred ceEEEecCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc-ccccccccccccccceEEeccCCCCceEEE
Confidence 22223211 1112223333 3455544 3 456666664 343322 111 10 112222222 234433
Q ss_pred E---------ECCeEEEEecCCCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEE
Q 043572 320 L---------RGGKMELYHKKSGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICY 373 (997)
Q Consensus 320 ~---------~~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l 373 (997)
+ .++.|.|+++.++..++++........-..++ ++. .|+.+..++++.|...
T Consensus 318 ~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~-~s~-~g~~l~s~sd~~i~iw 378 (383)
T 3ei3_B 318 RYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK-FSP-TGDVLASGMGFNILIW 378 (383)
T ss_dssp CBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE-ECT-TSSEEEEEETTEEEEE
T ss_pred ecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE-Eec-CccEEEEecCCcEEEE
Confidence 2 25789999999999999986432100011111 222 3465666666655443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.014 Score=66.65 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
..|.|+...++.|+.|+.+|.+..|....... ...+. -...+|..+.. +.+.++++-.||+
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--------------~~~~~---~h~~~v~~l~~--~~~~l~sg~~dg~ 194 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--------------KRILT---GHTGSVLCLQY--DERVIITGSSDST 194 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCE--------------EEEEC---CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--------------EEEEc---CCCCcEEEEEE--CCCEEEEEcCCCe
Confidence 45899998899999999999999998764321 11111 14567888776 5565555556889
Q ss_pred EEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 112 LFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 112 l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
|.+|++..-+.+..+.. ...+..++.
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~----------------------------------------------------- 221 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRF----------------------------------------------------- 221 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEEC-----------------------------------------------------
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEE-----------------------------------------------------
Confidence 99999876544322111 111222221
Q ss_pred cCCceEEEEE-ECceEEEEEEeCCeEE-EEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 191 CRGDNVFAVI-IGKRLVLIELVNGSFV-ILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 191 ~~~~~~l~Va-~kkki~i~~~~~~~~~-~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
++. .++++ ....|.+|....+... ..+.+. ....+.++.|.++.++.|.. ....++|+.++.....+.... .
T Consensus 222 -~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~ 297 (435)
T 1p22_A 222 -NNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--R 297 (435)
T ss_dssp -CTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS--S
T ss_pred -cCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--C
Confidence 111 23444 3456888887655322 212221 23467899998888888865 568899998876554444221 1
Q ss_pred CCceEEcCCCCeEEEEe-CCeEEEEccC-CCcccccccc-CCCCCeEEEeCcEEEEEE-CCeEEEEecCCCc--------
Q 043572 267 PPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVF-RKSPDAVGELSMYVVVLR-GGKMELYHKKSGI-------- 334 (997)
Q Consensus 267 ~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w-~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~-------- 334 (997)
......+. ++.++.+. |+...+.|.. |.+.+ ++.- ......+.+...++++.. ++.|.|.++.++.
T Consensus 298 ~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 298 GIACLQYR-DRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp CEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred cEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEE-EEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence 11122222 33444443 4566666653 54432 2211 223445666666777665 6789999986654
Q ss_pred -eEEEEe
Q 043572 335 -CVQAVT 340 (997)
Q Consensus 335 -lvQ~i~ 340 (997)
.++++.
T Consensus 376 ~~~~~~~ 382 (435)
T 1p22_A 376 LCLRTLV 382 (435)
T ss_dssp TEEEEEC
T ss_pred hheeecc
Confidence 666664
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.035 Score=62.31 Aligned_cols=239 Identities=12% Similarity=0.075 Sum_probs=133.7
Q ss_pred eeEEeecCCeEEE---EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEEecC
Q 043572 34 ISPISDCQVLIYI---GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLLFCD 109 (997)
Q Consensus 34 I~ci~~~~~~l~i---GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~l~d 109 (997)
..+++...+.+.+ |+.+|.+..|.+....... .....+. -+..+|..+..-| +.+.++.+-.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------~~~~~~~---~h~~~V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------KNVPLVC---GHTAPVLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------TTCCCBC---CCSSCEEEEEECTTCTTEEEEEETT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------CCCceEe---cCCCCEEEEEeCCCCCCEEEEEeCC
Confidence 3445655555443 7899999999886532100 0111111 1567899999999 66655554558
Q ss_pred CeEEEeecCccc-------cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 110 QCLFLTDSLLTQ-------PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 110 ~~l~~~~l~~l~-------~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
|+|.+|++..-. ++..+. -...|+.++..+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p------------------------------------------ 141 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP------------------------------------------ 141 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS------------------------------------------
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc------------------------------------------
Confidence 899999998752 221111 112233333322
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeE---ecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCc
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEI---QCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei---~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~ 254 (997)
++...++.+. ...|.+|....++. ...+ ...+.+.+++|. ++.|+.|.. ....++|+.++.
T Consensus 142 ----------~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 142 ----------TAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp ----------SBTTEEEEEETTSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred ----------CCCCEEEEEcCCCEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 1112344444 45578887766532 2333 135678999997 445777754 578899998887
Q ss_pred ceeeecCCCCCCCCceEEcCCCCeEEEEe-----CCeEEEEccCC-Ccccc--ccccCCCCCeEEEe--CcEEEEEE--C
Q 043572 255 SGVIFTLPDVSCPPMLKLLSKEQKVLLLV-----DNVGVFVDAHG-QPVGG--SLVFRKSPDAVGEL--SMYVVVLR--G 322 (997)
Q Consensus 255 ~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~-----~~~g~fv~~~G-~~~r~--~i~w~~~P~~i~~~--~PYll~~~--~ 322 (997)
....+.....+..+....+..++.+|++. ++...+.|... ..... .+.-...+..+.+. ..++++.. +
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 65555222222223333343345766653 44555566543 22111 22233445566665 34776554 6
Q ss_pred CeEEEEecCCCce-EEEE
Q 043572 323 GKMELYHKKSGIC-VQAV 339 (997)
Q Consensus 323 ~~ieI~~~~~~~l-vQ~i 339 (997)
+.|.|+++.++.. ++.+
T Consensus 290 g~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp SCEEEEEECSSTTCEEEE
T ss_pred CeEEEEEecCCCcceEee
Confidence 7899999998773 4444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.073 Score=57.93 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=133.5
Q ss_pred ceeeeeEEeec------CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 30 RSLSISPISDC------QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~~------~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
....|.|++.. +..|+-|+.||.+..|....... .....++ -...+|..+..-+....+
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------~~~~~l~---gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------DLQWSLE---GHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECSSSSEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------eeeeeec---cCCCCEEEEEECCCCCEE
Confidence 34578888853 34699999999999998864321 0010111 146689999988888755
Q ss_pred EEEecCCeEEEeecCccccccccccc-cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFL-KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~-kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|++|++|++..-..+..+..- ..+..++..+
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp------------------------------------------- 132 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------------------------------------- 132 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-------------------------------------------
T ss_pred EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-------------------------------------------
Confidence 55455899999998764332211100 0111111111
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCccee
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGV 257 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~ 257 (997)
++ ..++++. ..++.+|.+..+... ..+. -...+.+++|.. ..|+.|.. ....++|+.+++...
T Consensus 133 ---------dg-~~l~~g~~dg~v~i~~~~~~~~~--~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~ 200 (321)
T 3ow8_A 133 ---------DS-QYLATGTHVGKVNIFGVESGKKE--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 200 (321)
T ss_dssp ---------TS-SEEEEECTTSEEEEEETTTCSEE--EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------CC-CEEEEEcCCCcEEEEEcCCCcee--EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 11 2334433 356778777654322 2222 234578888874 45777754 568899998876544
Q ss_pred eecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccC-CCccccccccC-CCCCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 258 IFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 258 l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
.+.-. ........+..++.+|++. |....+.|.. |... .++.-. .....+++. ..+++... ++.|.|.++
T Consensus 201 ~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 201 TLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp EECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 44321 1111223343344566552 4455556653 3322 122211 123344553 45777665 578999999
Q ss_pred CCCceEEEEe
Q 043572 331 KSGICVQAVT 340 (997)
Q Consensus 331 ~~~~lvQ~i~ 340 (997)
.++..++++.
T Consensus 278 ~~~~~~~~~~ 287 (321)
T 3ow8_A 278 GTRTCVHTFF 287 (321)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998874
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.09 Score=58.37 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=135.3
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccc-c-ccccccCCCcceEEEeec-ccCcE
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVS-F-LKTVSVADSPVESIFVLD-DVGKV 103 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~qi~vl~-~~~~l 103 (997)
....|+|++.. ++.|+.|+.+|.+..|.+......... ...... . .........+|..+...| ..+.+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE------eccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 45689999874 568999999999999998765421000 000000 0 000001566899999999 44544
Q ss_pred EEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
+.+-.|+.|++|++...++.........+..++..+..
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 153 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS------------------------------------------ 153 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSC------------------------------------------
T ss_pred EEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCC------------------------------------------
Confidence 44344889999998875544333222233333322100
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC---EEEEEEC-CcEEEEEecCCcc-e
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND---SIIVGTV-NGYSLFSCVTGQS-G 256 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~---~l~vg~~-~~y~lidl~~g~~-~ 256 (997)
.++ ..++++. ...|.+|.+..+... +.+. ....+.++.|..+ .++.|.. ....++|+.++.. .
T Consensus 154 -------~~~-~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 154 -------TKH-CLVAVGTRGPKVQLCDLKSGSCS--HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp -------SSC-CEEEEEESSSSEEEEESSSSCCC--EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred -------CCC-cEEEEEcCCCeEEEEeCCCccee--eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 011 2344444 456888887654322 2222 3456789999843 3656654 5688999976642 1
Q ss_pred eeecCCC-----------CCCCCce--EEcCCCCeEEE-Ee-CCeEEEEccC-CCcccc----ccccCCCCCeEEE----
Q 043572 257 VIFTLPD-----------VSCPPML--KLLSKEQKVLL-LV-DNVGVFVDAH-GQPVGG----SLVFRKSPDAVGE---- 312 (997)
Q Consensus 257 ~l~~~~~-----------~~~~p~i--~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~~r~----~i~w~~~P~~i~~---- 312 (997)
..+.... ......+ ..+..++.+|+ +. |+...+.|.. |..... ...-...+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 1121100 0111112 22333344444 43 4566666653 443221 0001111111111
Q ss_pred eCcEEEEEECCeEEEEecCCCceEEEEec
Q 043572 313 LSMYVVVLRGGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 313 ~~PYll~~~~~~ieI~~~~~~~lvQ~i~~ 341 (997)
...++++-.++.|.|+++.++..++++.-
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred CceEEEEecCCEEEEEECcCCcceeeecc
Confidence 13355566789999999999999988863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.40 E-value=0.012 Score=65.78 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=50.2
Q ss_pred eeeeEEeec------C---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccC-----CCcceEEEee
Q 043572 32 LSISPISDC------Q---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVA-----DSPVESIFVL 97 (997)
Q Consensus 32 ~~I~ci~~~------~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~qi~vl 97 (997)
..|+|++.. + +.|+.|+.+|.+..|.+....... ......+. .. ..+|..+...
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---------KVIFEKLD---LLDSDMKKHSFWALKWG 130 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC---------CEEEEEEC---CSCTTGGGSCEEEEEEE
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc---------cccceeec---ccccccCCCcEEEEEEe
Confidence 468888765 5 679999999999999987543200 00011111 12 4789999999
Q ss_pred ----cccCc-EEEEecCCeEEEeecCc
Q 043572 98 ----DDVGK-VLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 98 ----~~~~~-lLv~l~d~~l~~~~l~~ 119 (997)
|+.+. ++++-.|+.|++|++..
T Consensus 131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 131 ASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp CCC----CEEEEEEETTSCEEEEEEES
T ss_pred eccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 88886 66655689999999877
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.032 Score=62.15 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=137.8
Q ss_pred eeeEEeec--CCeEE-EEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 33 SISPISDC--QVLIY-IGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 33 ~I~ci~~~--~~~l~-iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.+.|++.. ++.|| .|+.+|.+..|...... ...... ...+|..+.+-|+.++++++-.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------------~~~~~~----~~~~v~~~~~spdg~~l~~~~~~ 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------VIATVP----AGSSPQGVAVSPDGKQVYVTNMA 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------EEEEEE----CSSSEEEEEECTTSSEEEEEETT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------EEEEEE----CCCCccceEECCCCCEEEEEECC
Confidence 46777754 55675 45689999988775432 111111 2338999999999887766443
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+.|++|++..-+....+..-.++..++..+
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~------------------------------------------------- 125 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP------------------------------------------------- 125 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-------------------------------------------------
T ss_pred CCEEEEEECCCCeEEEEEeCCCCcceEEECC-------------------------------------------------
Confidence 4799999987654433222223344444322
Q ss_pred cccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~~~l~~~~ 262 (997)
++ ..++++. ...|.+|....++. .+.+.....+..+.|.. +.++++.. ....++|+.++.....++..
T Consensus 126 ---dg-~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 199 (391)
T 1l0q_A 126 ---DG-KKLYVTNNGDKTVSVINTVTKAV--INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE 199 (391)
T ss_dssp ---TS-SEEEEEETTTTEEEEEETTTTEE--EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred ---CC-CEEEEEeCCCCEEEEEECCCCcE--EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC
Confidence 11 1233333 34566666555433 34444566788888884 45655543 46899999888766666543
Q ss_pred CCCCCCceEEcCCCCe-EEEEe----CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCC
Q 043572 263 DVSCPPMLKLLSKEQK-VLLLV----DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKS 332 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e-~Ll~~----~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~ 332 (997)
. .+....+..++. ++++. ++...++|.. |.+.+ .+.-...|..+++. ..++++.. ++.|.|+++.+
T Consensus 200 ~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 A---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp S---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred C---CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE-EEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 2 233333433334 44443 3456666754 43322 33334456666666 44776553 57899999999
Q ss_pred CceEEEEecCC
Q 043572 333 GICVQAVTFGG 343 (997)
Q Consensus 333 ~~lvQ~i~~~~ 343 (997)
++++++++...
T Consensus 276 ~~~~~~~~~~~ 286 (391)
T 1l0q_A 276 NTITATMAVGK 286 (391)
T ss_dssp TEEEEEEECSS
T ss_pred CcEEEEEECCc
Confidence 99999987643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.055 Score=61.16 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=135.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... ...++ -...+|..+...|+.+.++.+-.|
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------~~~l~---~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------ERTLK---GHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------------CEEEC---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------EEEEe---ccCCcEEEEEEcCCCCEEEEEeCC
Confidence 578898865 56899999999999998865431 11111 156689999999988866666668
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
++|.+|++...+.+..+.. ...|+.++..+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p------------------------------------------------- 202 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMP------------------------------------------------- 202 (410)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECS-------------------------------------------------
T ss_pred CeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-------------------------------------------------
Confidence 9999999877655433221 22344444332
Q ss_pred cccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeecCCC
Q 043572 189 QHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 189 ~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~~~~ 263 (997)
++. .++.+ ..+.|.+|....+. .++.+.- .+.+.++.+.. ..++.|. .+...+.|+.++.....+....
T Consensus 203 ---~~~-~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 203 ---NGD-HIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp ---SSS-EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CCC-EEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence 111 23333 34557788776542 2233322 34567777774 3466664 4578889998776443332111
Q ss_pred CCCCCceEEc-C-------------------CCCeEEEE--eCCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEE
Q 043572 264 VSCPPMLKLL-S-------------------KEQKVLLL--VDNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYV 317 (997)
Q Consensus 264 ~~~~p~i~~~-~-------------------~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYl 317 (997)
.. .....+ + ..+.+|++ .|+...+.|. .|.+.. ++.= ......+++. ..||
T Consensus 277 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 277 HV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp SC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSCE
T ss_pred ce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE-EEECCCCcEEEEEEcCCCCEE
Confidence 00 000011 1 11345554 3455556664 343321 1111 1112344443 3577
Q ss_pred EEEE-CCeEEEEecCCCceEEEEecC
Q 043572 318 VVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 318 l~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
++.. ++.|.|.++.++..++++.-.
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCEEEECC
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCC
Confidence 7665 578999999999998888643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.03 Score=61.58 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=129.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .....+. -...+|..+...+. .+.++.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc------------eeeeEec---CCCCcEEEEEeCCCCCCCEEEEe
Confidence 3578888854 66899999999999999874321 1111111 25678999998876 5655555
Q ss_pred ecCCeEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-.||+|++|++..-. +..... ....+..++..+..
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------------------ 113 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE------------------------------------------ 113 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------------------------------------
T ss_pred ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC------------------------------------------
Confidence 558899999987643 211111 12234444432210
Q ss_pred chhcccccCCceEEEEE-ECceEEEEEEeCCeEE-EEEeEecCCcceEEEEeC---------------CEEEEEEC-CcE
Q 043572 184 VKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLN---------------DSIIVGTV-NGY 245 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~-~~kei~~~~~~~~l~~~~---------------~~l~vg~~-~~y 245 (997)
.+ ..++++ ....|.+|.+...... ...-......+.++.|.. +.++.|.. ...
T Consensus 114 --------~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 184 (379)
T 3jrp_A 114 --------YG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184 (379)
T ss_dssp --------GC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCE
T ss_pred --------CC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeE
Confidence 01 234444 4456888888765221 111112355778999874 45777754 568
Q ss_pred EEEEecCCcce--eeecCCCCCCCCceEEcCCC---CeEEEE--eCCeEEEEccC-CCcc-cc-ccc---cCCCCCeEEE
Q 043572 246 SLFSCVTGQSG--VIFTLPDVSCPPMLKLLSKE---QKVLLL--VDNVGVFVDAH-GQPV-GG-SLV---FRKSPDAVGE 312 (997)
Q Consensus 246 ~lidl~~g~~~--~l~~~~~~~~~p~i~~~~~~---~e~Ll~--~~~~g~fv~~~-G~~~-r~-~i~---w~~~P~~i~~ 312 (997)
.++|+.++... .+..............+..+ +.+|++ .|+...+.+.. |... .. .+. .......+.+
T Consensus 185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (379)
T 3jrp_A 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 264 (379)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE
Confidence 89999876533 22222221111122233333 466655 34555666653 3211 11 122 2222334444
Q ss_pred e--CcEEEEEE-CCeEEEEecCCCce
Q 043572 313 L--SMYVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 313 ~--~PYll~~~-~~~ieI~~~~~~~l 335 (997)
. ..||++.. ++.|.|+++.++..
T Consensus 265 s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 265 SLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred cCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 3 34666554 56899998875443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.14 Score=57.46 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=58.3
Q ss_pred ccccCCCCCCCccceeeeeEEee---cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceE
Q 043572 17 QFDLSHYSRSSPIRSLSISPISD---CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVES 93 (997)
Q Consensus 17 ~~~~~~~~~~~~~~~~~I~ci~~---~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~q 93 (997)
+||.........+....+.++.+ .++.|+.|+.+|.+..|...... .....+ -...+|..
T Consensus 82 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~---~h~~~v~~ 144 (420)
T 3vl1_A 82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--------------QREIDQ---AHVSEITK 144 (420)
T ss_dssp EEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--------------EEEETT---SSSSCEEE
T ss_pred EEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--------------eeeecc---cccCccEE
Confidence 44543322323333445555544 46789999999999988765322 111111 15678999
Q ss_pred EEeecccCcEEEEecCCeEEEeecCccccc
Q 043572 94 IFVLDDVGKVLLLFCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 94 i~vl~~~~~lLv~l~d~~l~~~~l~~l~~~ 123 (997)
+...|+.+.++.+-.|++|++|++...+.+
T Consensus 145 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 145 LKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 999999886666566889999999875544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.034 Score=59.95 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=53.9
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+...... ......+. -...+|..|...|. .+.++.+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN----------WELSDSWR---AHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC----------EEEEEEEE---CCSSCEEEEEECCGGGCSEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc----------ceecceec---cCCCcEEEEEEcCCCCCCEEEEE
Confidence 4578888864 567999999999999999754321 01111111 25678999999985 5655554
Q ss_pred ecCCeEEEeecCcc
Q 043572 107 FCDQCLFLTDSLLT 120 (997)
Q Consensus 107 l~d~~l~~~~l~~l 120 (997)
-.|++|++|++..-
T Consensus 78 ~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 78 SYDKTVKLWEEDPD 91 (351)
T ss_dssp ETTSCEEEEEECTT
T ss_pred cCCCeEEEEecCCC
Confidence 55889999998764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0056 Score=67.25 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=51.8
Q ss_pred eeeeEEeecC------CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEE
Q 043572 32 LSISPISDCQ------VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVL 104 (997)
Q Consensus 32 ~~I~ci~~~~------~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lL 104 (997)
..|+|++... +.|+.|+.+|.+..|.+..... ...+. -...+|..|...| +.+.++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--------------~~~~~---~~~~~i~~~~~~~~~~~~l~ 132 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC--------------IKHYV---GHGNAINELKFHPRDPNLLL 132 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE--------------EEEEE---SCCSCEEEEEECSSCTTEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE--------------eeeec---CCCCcEEEEEECCCCCCEEE
Confidence 4578877543 3799999999999987764321 11111 1567899999999 666555
Q ss_pred EEecCCeEEEeecCccccc
Q 043572 105 LLFCDQCLFLTDSLLTQPL 123 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~ 123 (997)
.+-.||+|++|++..-++.
T Consensus 133 s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp EEETTSCEEEEETTTTEEE
T ss_pred EEeCCCeEEEEEeecCeEE
Confidence 5445889999999765443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.076 Score=59.30 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=130.6
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEe----CCCCCCCCCCCCCCCCccccccccccc------cCCCcceEEEeec
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSL----DPTAATTLHVPNTTPSQQHVSFLKTVS------VADSPVESIFVLD 98 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~I~qi~vl~ 98 (997)
..|+|++.. ++ .|+.|+.+|.+..|.+ ......-. ......+..... -...+|..+...|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK-------LTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE-------EEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc-------ccccccccccccccccccCCCCceEEEEEcC
Confidence 478888865 55 8999999999999999 43320000 000000000000 0345899999999
Q ss_pred ccCcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
+.+.++++-.||.|.+|+. .-.++..+. ....++.++..+
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~v~~~~~~~-------------------------------------- 159 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNK-------------------------------------- 159 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-TSCEEEEECCCCSCEEEEEECT--------------------------------------
T ss_pred CCCEEEEEeCCCeEEEEeC-CCCeeeeccCCCccEEEEEECC--------------------------------------
Confidence 8887777667889999983 222222111 112233333322
Q ss_pred ccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCc----------------ceEEEEeCC-EEEE
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDG----------------VKTMVWLND-SIIV 239 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~----------------~~~l~~~~~-~l~v 239 (997)
++. .++++. ...|.+|.+..+... +.+..+.. +.++.|..+ .+++
T Consensus 160 --------------~~~-~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (425)
T 1r5m_A 160 --------------DGT-HIISMDVENVTILWNVISGTVM--QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI 222 (425)
T ss_dssp --------------TSS-EEEEEETTCCEEEEETTTTEEE--EEECCC---------------CCCBSCCEEEETTEEEE
T ss_pred --------------CCC-EEEEEecCCeEEEEECCCCcEE--EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE
Confidence 111 234443 456778777654322 22222221 677777754 4666
Q ss_pred E-ECCcEEEEEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccC-CCccccccc-cCCCCCeEEEeC
Q 043572 240 G-TVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAH-GQPVGGSLV-FRKSPDAVGELS 314 (997)
Q Consensus 240 g-~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~-w~~~P~~i~~~~ 314 (997)
| ......++|+.++.....+.... .......+ +++..++.+. ++...+.+.. |.+.+ .+. -......+.+..
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN-CFYGHSQSIVSASWVG 299 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE-EECCCSSCEEEEEEET
T ss_pred EcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce-EecCCCccEEEEEECC
Confidence 6 44578899998775544443221 11111222 3333444444 4555566643 33322 221 123344555553
Q ss_pred c-EEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 315 M-YVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 315 P-Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
. ++++.. ++.|.|+++.++..++.+....
T Consensus 300 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp TTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 3 555544 6789999999999988887543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.29 E-value=0.026 Score=62.05 Aligned_cols=232 Identities=15% Similarity=0.047 Sum_probs=127.9
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
....|+|++.. ++.|+.|+.+|.+..|....... .....+. -...+|..|...|+.+.++++-
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~---~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELK---EHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEE---CCSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE------------Eeeeeec---CCCCcccEEEEeCCCCEEEEEc
Confidence 34567777754 56899999999999998875420 0111111 2566899999999888666655
Q ss_pred cCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 108 CDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
.|++|++|++..-+.... ......++.++..+
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------------- 106 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--------------------------------------------- 106 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT---------------------------------------------
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC---------------------------------------------
Confidence 688999999865432211 11122334333321
Q ss_pred hhcccccCCceEEEEEEC-ceEEEEEEeCCe-EEEEEeEec--CCcceEEEEeC--CEEEEEEC-CcEEEEEecC-----
Q 043572 185 KEEEQHCRGDNVFAVIIG-KRLVLIELVNGS-FVILKEIQC--MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVT----- 252 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~-~~~~kei~~--~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~----- 252 (997)
++ ..++++.. ..|.+|.+..+. +...+.+.. ...+.++.|.. +.++.|.. ....++|+..
T Consensus 107 -------~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 107 -------NE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp -------TS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred -------CC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 11 23555544 568888887653 333333322 45789999974 45777764 5688999642
Q ss_pred -------------CcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEcc-CCCccccccccCC-CCCeEEEe--
Q 043572 253 -------------GQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGEL-- 313 (997)
Q Consensus 253 -------------g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~-- 313 (997)
+.....+. ..........+..++.+|+ +. |+...+.|. .|.+.. .+.-.. ....+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-TLASETLPLLAVTFITE 255 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE-EEECSSCCEEEEEEEET
T ss_pred cccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE-EEccCCCCeEEEEEecC
Confidence 22222222 1111111222332334444 33 445555665 344332 222222 22344444
Q ss_pred CcEEEEEECCeEEEEecCC
Q 043572 314 SMYVVVLRGGKMELYHKKS 332 (997)
Q Consensus 314 ~PYll~~~~~~ieI~~~~~ 332 (997)
..++++-.++.|.|+++.+
T Consensus 256 ~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 256 SSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEETTSSCEEEEEET
T ss_pred CCEEEEEeCCeEEEEEccC
Confidence 3466655678899998877
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.06 Score=59.64 Aligned_cols=244 Identities=8% Similarity=0.033 Sum_probs=129.7
Q ss_pred ceeeeeEEeec--CCeEEEEcC------CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 30 RSLSISPISDC--QVLIYIGTQ------SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~------~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
.+..|+|++.. |..|+-|+. ||.+..|.......... . ..... -....|..+...|+..
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--------~-~~~~~----~~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--------L-CTAGV----QTEAGVTDVAWVSEKG 107 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--------G-CSEEE----ECSSCEEEEEEETTTE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--------E-ecccC----CCCCCEEEEEEcCCCC
Confidence 34678998864 557777776 78887776654332100 0 01111 1456799999999865
Q ss_pred cEEEEecCCeEEEeecCccccccccc-----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 102 KVLLLFCDQCLFLTDSLLTQPLKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 102 ~lLv~l~d~~l~~~~l~~l~~~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
+|++-.||+|++|++..-++..... -...|+.++..+
T Consensus 108 -~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp------------------------------------- 149 (357)
T 4g56_B 108 -ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS------------------------------------- 149 (357)
T ss_dssp -EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-------------------------------------
T ss_pred -EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-------------------------------------
Confidence 7776889999999986643322111 112244444322
Q ss_pred cccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--C-EEEEEE-CCcEEEEEe
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--D-SIIVGT-VNGYSLFSC 250 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~-~l~vg~-~~~y~lidl 250 (997)
++ ..++.+. ...|.+|....+.. ...+.. ...+.+++|.. + .++.|. .....+.|+
T Consensus 150 ---------------dg-~~l~sgs~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 150 ---------------DG-TQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp ---------------SS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred ---------------CC-CEEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 11 1344444 44578887765532 233322 35678898873 3 344554 456888899
Q ss_pred cCCcceeeecCCCCCCCCceEEc-CCCCeEEEE-e-CCeEEEEcc-CCCccccccccCC-CCCeEEEeC---cEEEEEE-
Q 043572 251 VTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLL-V-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGELS---MYVVVLR- 321 (997)
Q Consensus 251 ~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~~---PYll~~~- 321 (997)
.+++....+........+....+ ++++.++++ . |....+.|. .|++.+ ++.-.. ....+++.. .||++..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-TSAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-EECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-EEeccceeEEEEEEcCCCCCEEEEEeC
Confidence 87765444443322222222333 333445543 3 445555664 344332 222222 234555542 4666554
Q ss_pred CCeEEEEecCCCceEEEEecCC
Q 043572 322 GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 322 ~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++.|.|.++.++++++.+...+
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~ 312 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRD 312 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSS
T ss_pred CCEEEEEECCCCcEeEECCCCC
Confidence 5789999999999988875544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.045 Score=59.48 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=134.5
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. ++.|+-|+.||.+..|.+....... ..+...++ -...+|..+...|+...++.+-.
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------GVPVRSFK---GHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------EEEEEEEE---CCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------cccceEEe---CCcccEEEEEECCCCCEEEEEeC
Confidence 467888764 2579999999999999886432100 01111111 15678999999998886666566
Q ss_pred CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|++|++..-+++..+.. ...|..++..+
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------ 117 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK------------------------------------------------ 117 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECT------------------------------------------------
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcC------------------------------------------------
Confidence 89999999876544322211 12233333221
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--------EEEEE-ECCcEEEEEecCCccee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--------SIIVG-TVNGYSLFSCVTGQSGV 257 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--------~l~vg-~~~~y~lidl~~g~~~~ 257 (997)
++ ..++.+. .+.|.+|.+.......+.. ..+.+.++.|..+ .++.| ......+.|+.++....
T Consensus 118 ----~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 190 (319)
T 3frx_A 118 ----KA-SMIISGSRDKTIKVWTIKGQCLATLLG--HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190 (319)
T ss_dssp ----TS-CEEEEEETTSCEEEEETTSCEEEEECC--CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----CC-CEEEEEeCCCeEEEEECCCCeEEEEec--cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence 11 1233333 4457888776543332221 2345677777532 45555 44578889987765443
Q ss_pred eecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCC
Q 043572 258 IFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSG 333 (997)
Q Consensus 258 l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~ 333 (997)
.+.-. ...-....+..++.+|++ .|+...+.|........++.-......+++. ..++.+...+.+.|+++.++
T Consensus 191 ~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~ 268 (319)
T 3frx_A 191 DFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268 (319)
T ss_dssp EECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred eecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence 33211 111112233334455554 3556666775432211123323333344443 34777777889999999998
Q ss_pred ceEEEEe
Q 043572 334 ICVQAVT 340 (997)
Q Consensus 334 ~lvQ~i~ 340 (997)
.+++.+.
T Consensus 269 ~~~~~~~ 275 (319)
T 3frx_A 269 YLVDDLR 275 (319)
T ss_dssp EEEEEEC
T ss_pred eeeeccC
Confidence 8887764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.27 Score=52.13 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=130.4
Q ss_pred eeeeeEEee-cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 31 SLSISPISD-CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 31 ~~~I~ci~~-~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
...|+|++. .++.|+.|+.+|.+..|....... ..... ....+|..+...|+.+.++++-.|
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--------------GTVVY---TGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEE--------------EEEEE---ECSSCEEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--------------EEEee---cCCccEEEEEECCCCCEEEEecCC
Confidence 357888774 466899999999999999854321 11111 256789999999998877776678
Q ss_pred CeEEEeecCcccccccccc----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQPLKKLGF----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
+.+.+|++........+.. ...+..++.+
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------------------- 113 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ----------------------------------------------- 113 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----------------------------------------------
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEec-----------------------------------------------
Confidence 9999999876432111111 1122222211
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeee
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
+. .++++. ...|.+|. .+... ..+. ....+.++.|. ++.+++|.. ....++|. +.....+
T Consensus 114 -------~~-~l~~~~~d~~i~~~d--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~ 179 (313)
T 3odt_A 114 -------DG-VVISGSWDKTAKVWK--EGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTF 179 (313)
T ss_dssp -------TT-EEEEEETTSEEEEEE--TTEEE--EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEE
T ss_pred -------CC-EEEEEeCCCCEEEEc--CCcEE--EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEE
Confidence 11 233333 44566665 32222 2222 24566778775 456777755 46778882 3333333
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEe-CCeEEEEccC-CCccccccccC-CCCCeEEEeCc-EEEEE-ECCeEEEEecCCCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSM-YVVVL-RGGKMELYHKKSGI 334 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~P-Yll~~-~~~~ieI~~~~~~~ 334 (997)
...... ......+.+++.++.+. ++...+.|.. |.+.+ .+.-. .....+++... ++++. .++.|.|+++.++.
T Consensus 180 ~~~~~~-~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 180 SGIHND-VVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR-TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CSSCSS-CEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC
T ss_pred eccCcc-cEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh-hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc
Confidence 321111 11122232234555554 4455556653 44332 22211 22334454433 45544 46799999999999
Q ss_pred eEEEEecCC
Q 043572 335 CVQAVTFGG 343 (997)
Q Consensus 335 lvQ~i~~~~ 343 (997)
.++++....
T Consensus 258 ~~~~~~~~~ 266 (313)
T 3odt_A 258 LKQVITLPA 266 (313)
T ss_dssp EEEEEECSS
T ss_pred eeEEEeccC
Confidence 999987665
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.24 E-value=0.087 Score=56.57 Aligned_cols=190 Identities=15% Similarity=0.081 Sum_probs=108.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ...++ -...+|..+..-|+.+.++.+-.|
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------------~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------------LKTLK---GHSNYVFCCNFNPQSNLIVSGSFD 128 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------EEEEE---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--------------EEEEc---CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 467888754 56899999999999998865321 11111 156689999999988866665668
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++++|++....++..+.. ...++.++..+
T Consensus 129 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------- 159 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR------------------------------------------------- 159 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEECCCCEEEEEecCCCCcEEEEEEcC-------------------------------------------------
Confidence 9999999876543322211 12233333221
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec--CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC--MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~--~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++++. ...|.+|....+.. .+.+.. ...+..+.|.. ..++.|.. ....++|+.++.....+...
T Consensus 160 ---~~~-~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 160 ---DGS-LIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp ---TSS-EEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred ---CCC-EEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 111 234443 45577877765432 222222 23457788874 45777754 56889999887655544432
Q ss_pred CCCCCCceEEc-CCCCeEEEEe--CCeEEEEccC
Q 043572 263 DVSCPPMLKLL-SKEQKVLLLV--DNVGVFVDAH 293 (997)
Q Consensus 263 ~~~~~p~i~~~-~~~~e~Ll~~--~~~g~fv~~~ 293 (997)
..........+ ..++.+|++. |+...+.|..
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 21111111222 2334666552 4455555643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.032 Score=63.51 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=126.8
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|+|++..++.|+.|+.+|.+..|.+..... ...+. -...+|..+..- .+.++.+-.||
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~l~~~--~~~l~s~s~dg 233 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM--------------LNTLI---HHCEAVLHLRFN--NGMMVTCSKDR 233 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCCE--------------EEEEC---CCCSCEEEEECC--TTEEEEEETTS
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE--------------EEEEc---CCCCcEEEEEEc--CCEEEEeeCCC
Confidence 457999998888999999999999998865431 11111 145678887764 34566656688
Q ss_pred eEEEeecCcccccccccc----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 111 CLFLTDSLLTQPLKKLGF----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
+|.+|++..-.+...... ...+..++.
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------------------------------------------------- 264 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------------------------------------------- 264 (435)
T ss_dssp CEEEEECSSSSCCEEEEEECCCSSCEEEEEE-------------------------------------------------
T ss_pred cEEEEeCCCCCCceeeeEecCCCCcEEEEEe-------------------------------------------------
Confidence 999999876443211000 111222221
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++ ..++++. ...|.+|....+.. ++.+. ....+.++.|.++.++.|.. +...++|+.+|.....+....
T Consensus 265 -----~~-~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 265 -----DD-KYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp -----ET-TEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred -----CC-CEEEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 01 1244444 45677877765432 33333 24567899998888888865 578999998886555444221
Q ss_pred CCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CC-ccc-------ccccc-CCCCCeEEEeCcEEEEEE-CCeEEEEec
Q 043572 264 VSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQ-PVG-------GSLVF-RKSPDAVGELSMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~-~~r-------~~i~w-~~~P~~i~~~~PYll~~~-~~~ieI~~~ 330 (997)
..+..+.-++.+|+ +. |+...+.|.. |. +.. .++.- ......+.+...++++.. ++.|.|.++
T Consensus 337 ----~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 337 ----ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp ----SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred ----CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 11222211234444 33 4555555542 22 100 01221 234567778777777665 678999999
Q ss_pred CCCceEEEEec
Q 043572 331 KSGICVQAVTF 341 (997)
Q Consensus 331 ~~~~lvQ~i~~ 341 (997)
.+....+..+.
T Consensus 413 ~~~~~~~~~~~ 423 (435)
T 1p22_A 413 LNDPAAQAEPP 423 (435)
T ss_dssp -----------
T ss_pred CCCCCcccCCC
Confidence 88766665543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.14 Score=58.41 Aligned_cols=259 Identities=10% Similarity=0.071 Sum_probs=135.8
Q ss_pred eeeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec--ccCcEEEEe
Q 043572 31 SLSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD--DVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~--~~~~lLv~l 107 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....+ -...+|..+.+.+ +.+.++.+-
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--------------~~~~~---~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--------------THVFE---GHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEEEESSSCEEEEEEE
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--------------EEEEC---CCCCccEEEEEecCCCCCEEEEEc
Confidence 3578888865 44899999999999998864321 11111 1567899999885 445455555
Q ss_pred cCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc-ccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI-KANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~g~~~~~ 186 (997)
.|+++++|++..-..........+.......+.. .+.++... .+|. .+..
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~v~~----- 275 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL-----------------------RGHMASVRT----- 275 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGG-CTTEEEEE-----------------------CCCSSCEEE-----
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCC-CeEEEEEc-----------------------cCccceEEE-----
Confidence 6889999999875543321111111111101000 00000000 0000 0000
Q ss_pred cccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
...++. .++++. ...|.+|....+. .+..+. ..+.+.++.|.. +.++.|.. ....++|+.+|+....+..
T Consensus 276 --~~~~~~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 276 --VSGHGN-IVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp --EEEETT-EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --EcCCCC-EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 001122 344444 4567888776543 333333 245678898884 46777765 5688999988865544432
Q ss_pred CCCCCCCceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccCCCCC--eEEEeCcEEEEEECCeEEEEecCCCceEEE
Q 043572 262 PDVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRKSPD--AVGELSMYVVVLRGGKMELYHKKSGICVQA 338 (997)
Q Consensus 262 ~~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~~P~--~i~~~~PYll~~~~~~ieI~~~~~~~lvQ~ 338 (997)
.. .......+. +..++.+. |+...+.|...........-..... .+.....++++-.++.|.|.++.++.+++.
T Consensus 351 h~--~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 351 HT--ALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp CS--SCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred CC--CcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence 21 111122233 32444443 4566666654221111111111222 223345578877899999999999999987
Q ss_pred EecCC
Q 043572 339 VTFGG 343 (997)
Q Consensus 339 i~~~~ 343 (997)
.....
T Consensus 428 ~~~~~ 432 (464)
T 3v7d_B 428 NILKD 432 (464)
T ss_dssp CTTTT
T ss_pred hhccC
Confidence 54443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.17 Score=57.10 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCC------------CcceEEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVAD------------SPVESIF 95 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~I~qi~ 95 (997)
....|+|++.. ++.|+.|+.+|.+..|.+........... ...+......-.. .+|..|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC------CCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------cceeEecccccccccccccccccccCceEEEE
Confidence 44688888864 56899999999999999876542100000 0000000000122 6799999
Q ss_pred eeccc--CcEEEEecCCeEEEeecCc
Q 043572 96 VLDDV--GKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 96 vl~~~--~~lLv~l~d~~l~~~~l~~ 119 (997)
..|.. +.++.+-.|++|++|++..
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred EcCCCCcceEEEeCCCCeEEEEeccc
Confidence 99987 5677766789999999865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.047 Score=59.65 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=98.3
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... ..... ...+|..+...|+...++++..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 135 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--------------VATWK----SPVPVKRVEFSPCGNYFLAILD 135 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--------------EEEEE----CSSCEEEEEECTTSSEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------EEEee----cCCCeEEEEEccCCCEEEEecC
Confidence 4578888865 66899999999999998865331 11111 4568999999999987777555
Q ss_pred C-----CeEEEeecCccccccccccc--c------------ceEEEEeecccCCccccccccccccccccccCCcccchh
Q 043572 109 D-----QCLFLTDSLLTQPLKKLGFL--K------------GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRL 169 (997)
Q Consensus 109 d-----~~l~~~~l~~l~~~~~~~~~--k------------g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 169 (997)
+ +.+.+|++..-......... + .++.++..+
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 185 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST------------------------------ 185 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG------------------------------
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC------------------------------
Confidence 6 89999998764322211110 0 122222111
Q ss_pred hhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-Cc
Q 043572 170 LQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NG 244 (997)
Q Consensus 170 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~ 244 (997)
++ ..++++.. ..|.+|....+ ....+.+. ....+.++.|.. ..|++|.. ..
T Consensus 186 ----------------------~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 241 (369)
T 3zwl_B 186 ----------------------KG-KYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241 (369)
T ss_dssp ----------------------GG-CEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ----------------------CC-CEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence 11 23444444 55778877652 22333333 245678999974 45777754 57
Q ss_pred EEEEEecCCcceeeec
Q 043572 245 YSLFSCVTGQSGVIFT 260 (997)
Q Consensus 245 y~lidl~~g~~~~l~~ 260 (997)
..++|+.++.....+.
T Consensus 242 i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCceeeeec
Confidence 8899999887766665
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.12 E-value=0.26 Score=53.88 Aligned_cols=241 Identities=10% Similarity=-0.013 Sum_probs=126.4
Q ss_pred eeeeEEee--------cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcE
Q 043572 32 LSISPISD--------CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKV 103 (997)
Q Consensus 32 ~~I~ci~~--------~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~l 103 (997)
..|+|++. .++.|+-|+.||.+..|.+....... ....+...+. -...+|..+..-|+...+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-------~~~~~~~~l~---~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-------YFGIPHKALT---GHNHFVSDLALSQENCFA 91 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-------BSEEEEEEEC---CCSSCEEEEEECSSTTEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-------ccccccchhc---cCCCceEEEEECCCCCEE
Confidence 46888875 35679999999999999986543110 0001111111 256689999998888755
Q ss_pred EEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|++|++|++..-.++..+. -...|..++..+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp------------------------------------------- 128 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP------------------------------------------- 128 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-------------------------------------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-------------------------------------------
Confidence 554558999999987644332221 112233333322
Q ss_pred cchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeE-ecCCcceEEEEeC------------CEEEEEE-CCcEEEE
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI-QCMDGVKTMVWLN------------DSIIVGT-VNGYSLF 248 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei-~~~~~~~~l~~~~------------~~l~vg~-~~~y~li 248 (997)
++...+.....+.|.+|...........+. ...+.+.++.|.. ..++.|. .....+.
T Consensus 129 ---------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 129 ---------DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp ---------STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred ---------CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 122223333455688887764322221111 1234567787764 2455554 4567778
Q ss_pred EecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECC
Q 043572 249 SCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGG 323 (997)
Q Consensus 249 dl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~ 323 (997)
|. ++.....+.. .........+..++.+|++ .|+...+.|. .+......+.-......+++. .+++.+-.++
T Consensus 200 d~-~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~ 276 (343)
T 2xzm_R 200 NT-NFQIRYTFKA--HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276 (343)
T ss_dssp ET-TTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESS
T ss_pred cC-CCceeEEEcC--ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCC
Confidence 84 2332222221 1111122334434455554 3556666675 222111111112223344443 3466666788
Q ss_pred eEEEEecCCCceEE
Q 043572 324 KMELYHKKSGICVQ 337 (997)
Q Consensus 324 ~ieI~~~~~~~lvQ 337 (997)
.|.|.++.++....
T Consensus 277 ~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 277 GVKIFNLMTQSKAP 290 (343)
T ss_dssp CEEEEESSSCCSCS
T ss_pred CEEEEEeCCCCCCc
Confidence 99999998876655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.14 Score=57.26 Aligned_cols=231 Identities=11% Similarity=0.078 Sum_probs=128.3
Q ss_pred EeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec-ccCcEEEEecCCeEEEe
Q 043572 37 ISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD-DVGKVLLLFCDQCLFLT 115 (997)
Q Consensus 37 i~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~-~~~~lLv~l~d~~l~~~ 115 (997)
+...++.|+.|+.+|.+..|....... ... +....+..+...+ +.+.++++-.|+.|.+|
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDG--------------SKM-----LKRADYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEET--------------TTT-----SCSCCEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred eeecCCeEEEEEcCCcEEEEEecccce--------------eeE-----EecCCceEEEEEecCCCEEEEEECCCCEEEE
Confidence 344578899999999999998764321 111 1222566665554 45545554457899999
Q ss_pred ecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCc
Q 043572 116 DSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGD 194 (997)
Q Consensus 116 ~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (997)
++..-.+.... .-...|+.++..+ ++
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~----------------------------------------------------~~- 151 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFP----------------------------------------------------SG- 151 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECT----------------------------------------------------TS-
T ss_pred eCCCcceeeecccccCccEEEEECC----------------------------------------------------CC-
Confidence 98764433222 2223345444332 11
Q ss_pred eEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCCCCC--
Q 043572 195 NVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCP-- 267 (997)
Q Consensus 195 ~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~-- 267 (997)
..++.+.. ..|.+|.+..++. .+.+. ....+.+++|.. ..|+.|.. ....++|+.++.....+........
T Consensus 152 ~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 152 EALISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SEEEEEETTSEEEEEETTTCCC--CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CEEEEEeCCCeEEEEeCCCCcC--ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 13444444 5688888765422 22222 345789999984 45777765 4588999988876555543211000
Q ss_pred ------------------Cc--eEEcCCCCeEEEE-e-CCeEEEEcc-CCCccccc-cccCCCCCeEEEeCc---EEEEE
Q 043572 268 ------------------PM--LKLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGGS-LVFRKSPDAVGELSM---YVVVL 320 (997)
Q Consensus 268 ------------------p~--i~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~-i~w~~~P~~i~~~~P---Yll~~ 320 (997)
.. ...+..++.++++ . |+...+.|. .|...... -........+++... ++++-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 00 1112234455554 3 445566665 33322211 112233445666543 66665
Q ss_pred E-CCeEEEEecCCCc-eEEEEec
Q 043572 321 R-GGKMELYHKKSGI-CVQAVTF 341 (997)
Q Consensus 321 ~-~~~ieI~~~~~~~-lvQ~i~~ 341 (997)
. ++.|.|+++.++. .++++..
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEE
T ss_pred eCCCeEEEEEcCCCcCchhhhhc
Confidence 5 5789999999874 4777764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.053 Score=60.63 Aligned_cols=243 Identities=11% Similarity=0.057 Sum_probs=127.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|..... ....+. -...+|..+...|+.+.++++-.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---------------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---------------LLNVLN---FHRAPIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC---------------EEEEEC---CCCSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------eeeecc---CCCccEEEEEECCCCCEEEEEec
Confidence 3478898865 568999999999999972211 111111 25678999999999887777566
Q ss_pred CCeEEEeecCccccccccccccce-EEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGI-SVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|++....++.......+. ..+.......+ ...+..+.
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~---- 213 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGD--------------------------------GSLGVDVE---- 213 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC-----------------------------------------------CCCBSCCE----
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCC--------------------------------cceeeEEE----
Confidence 899999998765433221110000 00000000000 00000000
Q ss_pred ccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 188 EQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 188 ~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
+ ..+ ...++......|.+|....+... ..+. ....+.++.|.. ..|++|.. ....++|+.++.....+....
T Consensus 214 ~-~~~-~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 289 (425)
T 1r5m_A 214 W-VDD-DKFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289 (425)
T ss_dssp E-EET-TEEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS
T ss_pred E-cCC-CEEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC
Confidence 0 001 12233334456777777654222 2221 345678999984 45777764 568899998776555553221
Q ss_pred CCCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCc
Q 043572 264 VSCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGI 334 (997)
Q Consensus 264 ~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~ 334 (997)
.......+..++.++.+. ++...+.|. .|.... .+.- ...+..+.+. ..++++.. ++.|.|+++.++.
T Consensus 290 --~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 290 --QSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp --SCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred --ccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 111122223333444443 455556665 333321 2222 2233344444 44676655 5789999998877
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.15 Score=56.56 Aligned_cols=225 Identities=9% Similarity=0.046 Sum_probs=134.0
Q ss_pred eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCCeEEEeecCccc
Q 043572 43 LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQCLFLTDSLLTQ 121 (997)
Q Consensus 43 ~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~~l~~~~l~~l~ 121 (997)
.++.|+.+|.+..|...... ....+. ....+..+.+-|+.+.++++- .|++|++|++...+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~--------------~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNK--------------VTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--------------EEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCe--------------EEEEee----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 35667889999998876432 111111 233588888888888665633 47899999987655
Q ss_pred cccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEE
Q 043572 122 PLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII 201 (997)
Q Consensus 122 ~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~ 201 (997)
....+..-..+..++..+ ++ ..++++.
T Consensus 66 ~~~~~~~~~~v~~~~~sp----------------------------------------------------dg-~~l~~~~ 92 (391)
T 1l0q_A 66 VIATVPAGSSPQGVAVSP----------------------------------------------------DG-KQVYVTN 92 (391)
T ss_dssp EEEEEECSSSEEEEEECT----------------------------------------------------TS-SEEEEEE
T ss_pred EEEEEECCCCccceEECC----------------------------------------------------CC-CEEEEEE
Confidence 433222222444444322 11 2355555
Q ss_pred C--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcceeeecCCCCCCCCceEEcCC
Q 043572 202 G--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSK 275 (997)
Q Consensus 202 k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~ 275 (997)
. ..|.+|....++. .+.+.....+.+++|.. ..++++. .....++|+.+++....+.... .|....+..
T Consensus 93 ~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~ 167 (391)
T 1l0q_A 93 MASSTLSVIDTTSNTV--AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTP 167 (391)
T ss_dssp TTTTEEEEEETTTTEE--EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECT
T ss_pred CCCCEEEEEECCCCeE--EEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECC
Confidence 3 5677777665533 33444566788999984 3565553 4578999998887766666532 233344443
Q ss_pred CCeEE-EEe--CCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEE----CCeEEEEecCCCceEEEEecCC
Q 043572 276 EQKVL-LLV--DNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLR----GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 276 ~~e~L-l~~--~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~----~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++..+ ++. ++...++|.........+.-...|..+++. ..++++.. .+.|.|+++.++..++.++...
T Consensus 168 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 244 (391)
T 1l0q_A 168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC
Confidence 33444 442 345666675433221233334456666665 34676654 5789999999999998887644
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.062 Score=60.13 Aligned_cols=237 Identities=10% Similarity=0.010 Sum_probs=128.6
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-cCcEEEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-VGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-~~~lLv~ 106 (997)
....|+|++.. ++.|+.|+.+|.+..|.+....... .....+. -...+|..+...|+ .+.++.+
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~----------~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI----------NSMARFS---NHSSSVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC----------CEEEECC---CSSSCCCEEEECSSSTTBEEEE
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc----------cchhhcc---CCccceEEEEEcCCCCCEEEEE
Confidence 34678998864 5579999999999999887532110 0111111 25668999999998 5544454
Q ss_pred ecCCeEEEeecCcccc------cccc----ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 107 FCDQCLFLTDSLLTQP------LKKL----GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~------~~~~----~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
-.|++|++|++..... .... .....+..++..+
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------- 175 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ------------------------------------- 175 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-------------------------------------
T ss_pred cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-------------------------------------
Confidence 4578999999976541 1011 0111122222211
Q ss_pred cccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-------CCcceEEEEeCC---EEEEEECC--
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-------MDGVKTMVWLND---SIIVGTVN-- 243 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-------~~~~~~l~~~~~---~l~vg~~~-- 243 (997)
++...++++ ....|.+|....++.. ..+.. ...+.++.|..+ .++.|...
T Consensus 176 ---------------~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 176 ---------------SLAHVFASAGSSNFASIWDLKAKKEV--IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp ---------------SCTTEEEEESSSSCEEEEETTTTEEE--EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ---------------CCCcEEEEEcCCCCEEEEECCCCCcc--eEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 111233333 3455888877665332 33333 456899999843 47777665
Q ss_pred --cEEEEEecCCc-ceeeecCCCCCCCCceEEcCC-CCeEEEE-e-CCeEEEEcc-CCCcccccccc-CCCCCeEEEeC-
Q 043572 244 --GYSLFSCVTGQ-SGVIFTLPDVSCPPMLKLLSK-EQKVLLL-V-DNVGVFVDA-HGQPVGGSLVF-RKSPDAVGELS- 314 (997)
Q Consensus 244 --~y~lidl~~g~-~~~l~~~~~~~~~p~i~~~~~-~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~~- 314 (997)
...++|+.++. ....+.. ..........+.. ++.+|++ . |+...+.|. .|.+.+ ++.- ......+.+..
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS-QFPARGNWCFKTKFAPE 316 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-EEECSSSCCCCEEECTT
T ss_pred CceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-eecCCCCceEEEEECCC
Confidence 78899998753 2222220 1111112222322 3344443 3 456666664 343322 2221 23345666654
Q ss_pred -c-EEEEEE-CCeEEEEecCCCce
Q 043572 315 -M-YVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 315 -P-Yll~~~-~~~ieI~~~~~~~l 335 (997)
| ++++.. ++.|.|+++.++..
T Consensus 317 ~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCEEEEEecCCcEEEEEccCCCC
Confidence 2 444333 57899999877543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.086 Score=56.80 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=38.1
Q ss_pred CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcceeeecC
Q 043572 202 GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 202 kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~~~l~~~ 261 (997)
...|.+|....++ ..+.+..+..+..+.|.. +.|+++ .....++|+.+++....++.
T Consensus 114 ~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~ 172 (337)
T 1pby_B 114 PTRVALYDAETLS--RRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp CCEEEEEETTTTE--EEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECS
T ss_pred CceEEEEECCCCc--EEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeec
Confidence 4677777765543 334455566788888873 447777 67899999988876544443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=58.66 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=132.1
Q ss_pred eeEEeec-CCeEEE-EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 34 ISPISDC-QVLIYI-GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 34 I~ci~~~-~~~l~i-GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
+.|++.. ++.+++ |+.+|.+..|......... ......+ . -...+|..+..-++.. ++++- .|+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------~~~~~~~-~---~~~~~v~~~~~~~~~~-~~~s~~~d~ 191 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR--------LSPPEKY-K---KKLGFVETISIPEHNE-LWVSQMQAN 191 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE--------ECCCHHH-H---TTCCEEEEEEEGGGTE-EEEEEGGGT
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee--------ecCcccc-c---ccCCceeEEEEcCCCE-EEEEECCCC
Confidence 4455543 555555 4567788888766432100 0000011 1 1345788888755544 66533 368
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++...+++..+. ....+..++.++.
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 222 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPI------------------------------------------------- 222 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETT-------------------------------------------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCC-------------------------------------------------
Confidence 99999987655433221 1223444443321
Q ss_pred ccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEE---------CCcEEEEEecCCcce
Q 043572 190 HCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGT---------VNGYSLFSCVTGQSG 256 (997)
Q Consensus 190 ~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~---------~~~y~lidl~~g~~~ 256 (997)
+ ..++++. ...|.+|....++ ..+.+.....+.++.|. ++.++++. .....++|+.++...
T Consensus 223 ---~-~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 223 ---R-DLVYCSNWISEDISVIDRKTKL--EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp ---T-TEEEEEETTTTEEEEEETTTTE--EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred ---C-CEEEEEecCCCcEEEEECCCCc--EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 1 1244444 3566676665443 33445455668889887 34677775 346778999888665
Q ss_pred eeecCCCCCCCCceEEcCCCC-eEEEE--eCCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEEC--------
Q 043572 257 VIFTLPDVSCPPMLKLLSKEQ-KVLLL--VDNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLRG-------- 322 (997)
Q Consensus 257 ~l~~~~~~~~~p~i~~~~~~~-e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~~-------- 322 (997)
..+.... .|.-..+..++ .++++ .++...+++.. |... ..+.-...|..+++. ..++++...
T Consensus 297 ~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 297 DTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred eeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-EEecCCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 5543321 23333343333 44444 24566667765 3332 234444556677776 347776654
Q ss_pred --------CeEEEEecCCCceEEEEecC
Q 043572 323 --------GKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 323 --------~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+.|.++++.++..++.+...
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~ 400 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAG 400 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred cccccccceEEEEEECCCCcEEEEecCC
Confidence 38999999999999988763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.079 Score=59.22 Aligned_cols=244 Identities=11% Similarity=0.093 Sum_probs=133.6
Q ss_pred eeeeEEeec--CC-eEEEE----------cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeec
Q 043572 32 LSISPISDC--QV-LIYIG----------TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLD 98 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iG----------T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~ 98 (997)
..|.|++.. +. .|+.| +.+|.+..|.+...... +...... ...+|..+..-|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----------~~~~~~~----~~~~v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----------KPIASLQ----VDSKFNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----------SCSCCCC----CSSCEEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----------cEEEEEe----cCCceEEEEECC
Confidence 456676654 33 68888 78889999988754311 0011111 456899999999
Q ss_pred ccCcEEEEecCCeEEEeecCccc----cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhc
Q 043572 99 DVGKVLLLFCDQCLFLTDSLLTQ----PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKF 173 (997)
Q Consensus 99 ~~~~lLv~l~d~~l~~~~l~~l~----~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 173 (997)
+...++++-.|+.|++|++.... +...+. ....++.++..+.
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------------------------- 124 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK--------------------------------- 124 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS---------------------------------
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC---------------------------------
Confidence 88877665568999999987621 111111 1112333332210
Q ss_pred cCccccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCe------E-EEEEe-EecCCcceEEEEeCC---EEEEEE
Q 043572 174 GSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGS------F-VILKE-IQCMDGVKTMVWLND---SIIVGT 241 (997)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~------~-~~~ke-i~~~~~~~~l~~~~~---~l~vg~ 241 (997)
++ ..++.+ ....|.+|.+..+. - ..... ......+.+++|..+ .++.|.
T Consensus 125 ------------------~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 185 (416)
T 2pm9_A 125 ------------------QD-NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185 (416)
T ss_dssp ------------------ST-TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred ------------------CC-CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence 01 123333 33457777665432 1 11111 123457799999853 466654
Q ss_pred -CCcEEEEEecCCcceeeecCCCC----CCCCceEEc-CCCC-eEEEEeCC----eEEEEccC-CCccccccc--cCCCC
Q 043572 242 -VNGYSLFSCVTGQSGVIFTLPDV----SCPPMLKLL-SKEQ-KVLLLVDN----VGVFVDAH-GQPVGGSLV--FRKSP 307 (997)
Q Consensus 242 -~~~y~lidl~~g~~~~l~~~~~~----~~~p~i~~~-~~~~-e~Ll~~~~----~g~fv~~~-G~~~r~~i~--w~~~P 307 (997)
.....++|+.++.....+..... ........+ ++++ .++.+.++ ...+.|.. |......+. -...+
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v 265 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence 45699999988776555554321 111122223 3332 34444433 45555653 221111222 22334
Q ss_pred CeEEEe---CcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 308 DAVGEL---SMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 308 ~~i~~~---~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
..+.+. ..++++.. ++.|.|+++.++..++++.-.
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 566664 34666655 678999999999999888653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.96 E-value=0.18 Score=55.21 Aligned_cols=203 Identities=9% Similarity=-0.019 Sum_probs=114.6
Q ss_pred cCCCcceEEEeecccCcEEEEecCCeEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccC
Q 043572 86 VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANAS 162 (997)
Q Consensus 86 ~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (997)
+...+|..+..-|+.+.++++-.|+.|++|++..-+ +...+. ....++.++..+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------------------- 62 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----------------------- 62 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----------------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-----------------------
Confidence 366789999999998866664478999999986643 222221 112233333322
Q ss_pred CcccchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEe-EecCCcceEEEEe--CCEEE
Q 043572 163 TSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKE-IQCMDGVKTMVWL--NDSII 238 (997)
Q Consensus 163 s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~ke-i~~~~~~~~l~~~--~~~l~ 238 (997)
++ ..++++. ...|.+|.+..++...... ......+.++.|. ++.++
T Consensus 63 -----------------------------~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 63 -----------------------------DS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp -----------------------------TT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------CC-CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEE
Confidence 11 2344444 4568899987775544332 2245578999998 44677
Q ss_pred EEEC-CcEEEEEecCCccee---eecCCCCCCCCceEEcCCCCeEE-EEe-CCeEEEEccC-------------------
Q 043572 239 VGTV-NGYSLFSCVTGQSGV---IFTLPDVSCPPMLKLLSKEQKVL-LLV-DNVGVFVDAH------------------- 293 (997)
Q Consensus 239 vg~~-~~y~lidl~~g~~~~---l~~~~~~~~~p~i~~~~~~~e~L-l~~-~~~g~fv~~~------------------- 293 (997)
+|.. ....++|+.++.... .+..+. ........+..++.++ .+. |+...+.|..
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeeccc-CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 7765 568889998776322 222111 1111222233233444 443 4555566632
Q ss_pred CCccccccc-cCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 294 GQPVGGSLV-FRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 294 G~~~r~~i~-w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
|.+.+ .+. -......+.+. ..++++.. ++.|.|+++.++..++++....
T Consensus 192 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 192 GELMF-ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp TCEEE-ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred hhheE-ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 22111 111 11223344553 34777665 5789999999999998887544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.12 Score=62.95 Aligned_cols=244 Identities=14% Similarity=0.073 Sum_probs=134.9
Q ss_pred eeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 31 SLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...|+|++.. ++.|+-|+.||.+..|.+.......+ .....+. -+..+|..+...|+.+.++.+-
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~---------~~~~~~~---~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG---------VAQRRLT---GHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC---------EEEEEEE---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc---------cccceec---CCCCcEEEEEECCCCCEEEEEe
Confidence 3578898864 24688999999999999875432100 0111111 2567899999999888666656
Q ss_pred cCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.|++|++|++..-.....+ .-...|..++..+
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~----------------------------------------------- 482 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL----------------------------------------------- 482 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-----------------------------------------------
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-----------------------------------------------
Confidence 6899999998764332221 1122344444322
Q ss_pred cccccCCceEEEEEECceEEEEEEeCCeEEEEEeE--ecCCcceEEEEeCC----EEEEEE-CCcEEEEEecCCcceeee
Q 043572 187 EEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEI--QCMDGVKTMVWLND----SIIVGT-VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei--~~~~~~~~l~~~~~----~l~vg~-~~~y~lidl~~g~~~~l~ 259 (997)
++...+.....+.|.+|...........+. ...+.+.++.|..+ .++.|. .+...+.|+.++.....+
T Consensus 483 -----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 557 (694)
T 3dm0_A 483 -----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557 (694)
T ss_dssp -----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence 111222223344577766543322221110 11235788888743 355554 567899999877654444
Q ss_pred cCCCCCCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCc
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGI 334 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~ 334 (997)
.-. ...-....+..++.+|++ .|+...+.|. .|.... ++.-......+.+. ..++.+-..+.|.|.++.++.
T Consensus 558 ~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 558 AGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-SLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-CCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred cCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence 321 111112233334455544 3455556664 343321 22222223333433 235666678899999999999
Q ss_pred eEEEEec
Q 043572 335 CVQAVTF 341 (997)
Q Consensus 335 lvQ~i~~ 341 (997)
+++.+..
T Consensus 635 ~~~~~~~ 641 (694)
T 3dm0_A 635 IVEDLKV 641 (694)
T ss_dssp EEEEECC
T ss_pred Chhhhcc
Confidence 9988754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.91 E-value=0.59 Score=50.14 Aligned_cols=241 Identities=11% Similarity=0.017 Sum_probs=127.1
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. ++.|+-|+.||.+..+.+.......+ .+...++ -...+|..+..-|+...++.+-.
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------~~~~~l~---~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------IPQRALR---GHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------EEEEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------eeeEEEe---CCCCCEEEEEECCCCCEEEEEcc
Confidence 579999975 34677899999999999976543110 1111111 24678999999999887777667
Q ss_pred CCeEEEeecCccccccccccc-cceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFL-KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~-kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+.+|+............. ..+......+
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 138 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS------------------------------------------------ 138 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECT------------------------------------------------
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEee------------------------------------------------
Confidence 899999987664322211111 1111111100
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC---CEE-EEE-ECCcEEEEEecCCcceeeecC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN---DSI-IVG-TVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~---~~l-~vg-~~~~y~lidl~~g~~~~l~~~ 261 (997)
.+ ..++.+. .+.+.+|..............-.+.+..+.|.. +.+ +.| ......+.|+.++.....+..
T Consensus 139 ----~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 213 (340)
T 4aow_A 139 ----DN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213 (340)
T ss_dssp ----TS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ----cC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC
Confidence 11 1233333 344666554333222211111234566777653 223 333 335678889887765444432
Q ss_pred CCCCCCCc-eEEcCCCCeEEEE--eCCeEEEEccCC-CccccccccCCCCCeEEEe--CcEEEEEECCeEEEEecCCCce
Q 043572 262 PDVSCPPM-LKLLSKEQKVLLL--VDNVGVFVDAHG-QPVGGSLVFRKSPDAVGEL--SMYVVVLRGGKMELYHKKSGIC 335 (997)
Q Consensus 262 ~~~~~~p~-i~~~~~~~e~Ll~--~~~~g~fv~~~G-~~~r~~i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~~~~l 335 (997)
.. .++ ...+..++.+|++ .|+...+.|... .+.+ .+.-......+.+. ..++.+-.++.|.|+++.++..
T Consensus 214 h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 214 HT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY-TLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE-EEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred CC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee-eecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 11 121 2233334455544 345555666532 2211 22222222233332 1244455688999999999988
Q ss_pred EEEEec
Q 043572 336 VQAVTF 341 (997)
Q Consensus 336 vQ~i~~ 341 (997)
++.+.-
T Consensus 290 ~~~~~~ 295 (340)
T 4aow_A 290 VDELKQ 295 (340)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 887753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.15 Score=57.36 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=124.0
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CD 109 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d 109 (997)
.|.|++. .++.++.|+.+|.+..|....... ..... .....+..+..-|+.+.++++- .|
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAY--------------KATVD---LTGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE--------------EEEEE---CSSSSEEEEEEETTTTEEEEEETTT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceE--------------EEEEc---CCCCCeeEEEEcCCCCEEEEEecCC
Confidence 6777775 344577778899999988764321 11111 1455788999999888676634 36
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+.|++|++...+++..+....++..++.++.
T Consensus 234 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 264 (433)
T 3bws_A 234 EDISVIDRKTKLEIRKTDKIGLPRGLLLSKD------------------------------------------------- 264 (433)
T ss_dssp TEEEEEETTTTEEEEECCCCSEEEEEEECTT-------------------------------------------------
T ss_pred CcEEEEECCCCcEEEEecCCCCceEEEEcCC-------------------------------------------------
Confidence 8999999876554433332233444443321
Q ss_pred ccCCceEEEEEE---------CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcce
Q 043572 190 HCRGDNVFAVII---------GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSG 256 (997)
Q Consensus 190 ~~~~~~~l~Va~---------kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~ 256 (997)
+ ..++++. ...|.+|....++.. +.+..+..+.+++|.. +.++++. .....++|+.++...
T Consensus 265 ---g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 265 ---G-KELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp ---S-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ---C-CEEEEEECCCCccccCCCeEEEEECCCCcEE--eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 1 1234433 346667776655333 3333455778888874 3566653 457889999888766
Q ss_pred eeecCCCCCCCCceEEcCCCCeEE-EEeCC----------------eEEEEcc-CCCccccccccCCCCCeEEEe--CcE
Q 043572 257 VIFTLPDVSCPPMLKLLSKEQKVL-LLVDN----------------VGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMY 316 (997)
Q Consensus 257 ~l~~~~~~~~~p~i~~~~~~~e~L-l~~~~----------------~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PY 316 (997)
..++... .|.-..+..++.++ ++... ...++|. .|...+ .+.-...|..+++. ..|
T Consensus 339 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 339 KSIPVFD---KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE-FWEAGNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEEECSS---SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-EEECSSSEEEEEECTTSCE
T ss_pred EEecCCC---CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-EecCCCCCceEEEcCCCCE
Confidence 6665432 23333444344444 44321 4444554 333322 22223445555553 346
Q ss_pred EEEEE--CCeEEEEecC
Q 043572 317 VVVLR--GGKMELYHKK 331 (997)
Q Consensus 317 ll~~~--~~~ieI~~~~ 331 (997)
+++.. ++.|.|+++.
T Consensus 415 l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 415 LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEETTTTEEEEEEET
T ss_pred EEEEECCCCeEEEEEec
Confidence 66543 4667776654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.053 Score=66.82 Aligned_cols=237 Identities=10% Similarity=0.010 Sum_probs=130.8
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .....+. -.+.+|..+...+. .+.++.+
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~------------~~~~~l~---~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCTTSCSEEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC------------ccceecc---CCcCceEEEEecCCCCCCEEEEE
Confidence 4578888854 66799999999999998874321 1111111 25678999999887 6666665
Q ss_pred ecCCeEEEeecCccc--ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 107 FCDQCLFLTDSLLTQ--PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 107 l~d~~l~~~~l~~l~--~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
-.||+|++|++..-. ++... .....++.++..+..
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~------------------------------------------ 111 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE------------------------------------------ 111 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------------------------------------
T ss_pred eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC------------------------------------------
Confidence 668999999986633 11111 112234444432210
Q ss_pred chhcccccCCceEEEEEEC-ceEEEEEEeCCeEE-EEEeEecCCcceEEEEeC---------------CEEEEEEC-CcE
Q 043572 184 VKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFV-ILKEIQCMDGVKTMVWLN---------------DSIIVGTV-NGY 245 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~-~~kei~~~~~~~~l~~~~---------------~~l~vg~~-~~y 245 (997)
++ ..++++.. ..|.+|.+..+... ...-...+..+.++.|.. +.+++|.. ...
T Consensus 112 --------~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I 182 (753)
T 3jro_A 112 --------YG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (753)
T ss_dssp --------GC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCE
T ss_pred --------CC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeE
Confidence 01 23444444 56888887655211 111122356788898874 45777765 568
Q ss_pred EEEEecCCcce--eeecCCCCCCCCceEEcCCC---CeEEEE--eCCeEEEEccCCC-cc-c-ccc---ccCCCCCeEEE
Q 043572 246 SLFSCVTGQSG--VIFTLPDVSCPPMLKLLSKE---QKVLLL--VDNVGVFVDAHGQ-PV-G-GSL---VFRKSPDAVGE 312 (997)
Q Consensus 246 ~lidl~~g~~~--~l~~~~~~~~~p~i~~~~~~---~e~Ll~--~~~~g~fv~~~G~-~~-r-~~i---~w~~~P~~i~~ 312 (997)
.++|+.++... .+..............+.++ +.++++ .|+...+.|.... .. . ... ........+++
T Consensus 183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence 89999877432 22222221111122233333 466665 3455666665432 11 1 111 12344555665
Q ss_pred e--CcEEEEEE-CCeEEEEecCCC
Q 043572 313 L--SMYVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 313 ~--~PYll~~~-~~~ieI~~~~~~ 333 (997)
. ..++++.. ++.|.|+++.++
T Consensus 263 spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 263 SLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCCCEEEEEcCCCEEEEEecCCC
Confidence 4 34666554 567888888754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.11 Score=58.16 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=127.1
Q ss_pred ceeeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEE
Q 043572 30 RSLSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLL 105 (997)
Q Consensus 30 ~~~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv 105 (997)
....|+|++.. ++.|+.|+.||.+..|.+........ .......+. -...+|..|...|..+ .++.
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-------~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-------LREPVITLE---GHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-------BCSCSEEEE---CCSSCEEEEEECSSBTTEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-------cCCceEEec---CCCCeEEEEEECcCCCCEEEE
Confidence 34679999874 56899999999999999876532100 001111111 2567899999999974 4444
Q ss_pred EecCCeEEEeecCcccccccc--c-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 106 LFCDQCLFLTDSLLTQPLKKL--G-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l~~~~~~--~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+-.|++|.+|++..-+++..+ . ....++.++..+
T Consensus 150 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------- 186 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR------------------------------------------- 186 (402)
T ss_dssp EETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-------------------------------------------
T ss_pred EcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-------------------------------------------
Confidence 445889999999875544333 1 122344444332
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeE-ecC-C-cceEEEEeCC--EEEEE----ECCcEEEEEecC
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEI-QCM-D-GVKTMVWLND--SIIVG----TVNGYSLFSCVT 252 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei-~~~-~-~~~~l~~~~~--~l~vg----~~~~y~lidl~~ 252 (997)
++. .++++. .+.|.+|....+.. ...+ ... + .+.++.|..+ .+++| ......++|+.+
T Consensus 187 ---------~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 187 ---------DGA-LICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp ---------TSS-CEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred ---------CCC-EEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 111 234443 45688887765532 3333 122 2 3688888853 36666 345788999987
Q ss_pred Ccc-eeeecCCCCCCCCceEEcCCCCeEE-EEe--CCeEEEEccC-CCc-ccc--ccccCCCCCeEEEeCcEEEEE-ECC
Q 043572 253 GQS-GVIFTLPDVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDAH-GQP-VGG--SLVFRKSPDAVGELSMYVVVL-RGG 323 (997)
Q Consensus 253 g~~-~~l~~~~~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~~-G~~-~r~--~i~w~~~P~~i~~~~PYll~~-~~~ 323 (997)
+.. ......+... ......+..++.+| ++. |+...+.+.. |.+ .+. ...-......+++..-..+.+ ..+
T Consensus 255 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 255 LEEPLSLQELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp CSSCSEEEECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred ccCCceEEeccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence 654 2233332211 12222333333444 443 4555555543 332 111 111124445555543221111 234
Q ss_pred eEEEEecCCCc
Q 043572 324 KMELYHKKSGI 334 (997)
Q Consensus 324 ~ieI~~~~~~~ 334 (997)
.+.++.+.++.
T Consensus 334 ~~~~~~l~~~~ 344 (402)
T 2aq5_A 334 IARFYKLHERK 344 (402)
T ss_dssp EEEEEEEETTE
T ss_pred eEEEEEcCCCc
Confidence 56666666643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.56 Score=50.71 Aligned_cols=143 Identities=13% Similarity=-0.010 Sum_probs=84.4
Q ss_pred EEEEE---CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 197 FAVII---GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 197 l~Va~---kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
++++. ..+|.+|....+ ...+.+. ....+..+.|. ++.++++.. ....++|+.+++....++.+..+..+.
T Consensus 155 l~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNI--KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp EEEEEESSSCEEEEEETTTT--EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred EEEEecCCCceEEEEcCCCC--ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 55554 344555554443 3444454 23347778886 456888855 468889999888776666643322222
Q ss_pred --eEEc-CCCCeEEEEe-C-CeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCceEEEE
Q 043572 270 --LKLL-SKEQKVLLLV-D-NVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGICVQAV 339 (997)
Q Consensus 270 --i~~~-~~~~e~Ll~~-~-~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~lvQ~i 339 (997)
-..+ ++++.+.++. + +....+|. .|...+ .+.. ..|..+++. .-++++.. .+.|.|++..++..++.+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-KVAA-PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-EEEC-SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEc-CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 2233 3333344443 2 45556675 344432 2332 335667765 34666665 578999999999999998
Q ss_pred ecCC
Q 043572 340 TFGG 343 (997)
Q Consensus 340 ~~~~ 343 (997)
+...
T Consensus 311 ~~~~ 314 (353)
T 3vgz_A 311 DTPT 314 (353)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 7754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.21 Score=54.94 Aligned_cols=230 Identities=12% Similarity=0.039 Sum_probs=122.1
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
..|+|++.. ++.|+.|+.+|.+..|.+...... ........ -+..+|..+...|+.+.++.+-.|+
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~----~H~~~V~~v~~spdg~~l~sgs~d~ 149 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKY----EHDDIVSTVSVLSSGTQAVSGSKDI 149 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEE----CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeecccc----CCCCCEEEEEECCCCCEEEEEeCCC
Confidence 358888864 567999999999999998764420 00000011 1466899999999988666656688
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++..-.++..+.. ...|..++..+
T Consensus 150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~-------------------------------------------------- 179 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASP-------------------------------------------------- 179 (344)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECS--------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEcCcCCceEEEEecC--------------------------------------------------
Confidence 999999876544332211 22233333221
Q ss_pred ccCCceEEEEEE-CceEEEEEEeCCeE-EEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 190 HCRGDNVFAVII-GKRLVLIELVNGSF-VILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 190 ~~~~~~~l~Va~-kkki~i~~~~~~~~-~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++...++.+. .+.|.+|....++. ..+....-...+.++.|.. ..++.|.. ....++|+.+++....+....
T Consensus 180 --~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~ 257 (344)
T 4gqb_B 180 --HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257 (344)
T ss_dssp --SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred --CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence 1112233333 45688877655422 2221111223468888873 24666765 458889998776443333211
Q ss_pred CCCCC-ceEEcC-CCCeEEEE--eCCeEEEEccCCCccccccccC---CCCCeEEEe--CcEEEEE-E-CCeEEEEecCC
Q 043572 264 VSCPP-MLKLLS-KEQKVLLL--VDNVGVFVDAHGQPVGGSLVFR---KSPDAVGEL--SMYVVVL-R-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p-~i~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~i~w~---~~P~~i~~~--~PYll~~-~-~~~ieI~~~~~ 332 (997)
.+ ....+. ++..+|++ .|....+.|..... .+... +....+++. .+++++- . ++.|-+..+.+
T Consensus 258 ---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 258 ---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 12 122333 33345543 34555555643211 11121 223344543 3566543 2 57788887766
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.062 Score=63.68 Aligned_cols=253 Identities=10% Similarity=0.017 Sum_probs=135.9
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
.++.++.|+.+|.+..|...... ....++ -...+|..+.. |+ ++.+-.||.|.+|++..
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~--------------~~~~~~---~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~ 366 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDE--------------VLKTIS---GHNKGITALTV-NP---LISGSYDGRIMEWSSSS 366 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEE--------------EEEEEC---CCSSCEEEEET-TT---TEEEETTSCEEETTTTE
T ss_pred CCCeEEEEECCCCEEEEECCCCc--------------EEEEEe---CCCCCEEEEEe-cC---cEEECCCCeEEEEEchh
Confidence 68899999999999999876422 111111 25668999998 77 55546788999999873
Q ss_pred cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEE
Q 043572 120 TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAV 199 (997)
Q Consensus 120 l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~V 199 (997)
+. ......+..++..+.. .++.+. .....++++..+..... .+...+ ...++ ..+++
T Consensus 367 ~~----~~~~~~v~~~~~~~~~------~l~~~~---------~d~~i~~~~~~~~~~~~--~~~~~~-~s~~~-~~~~~ 423 (615)
T 1pgu_A 367 MH----QDHSNLIVSLDNSKAQ------EYSSIS---------WDDTLKVNGITKHEFGS--QPKVAS-ANNDG-FTAVL 423 (615)
T ss_dssp EE----CCCCSCEEEEECCSTT------CCEEEE---------TTTEEEETTEEEEECSS--CEEEEE-ECSSS-EEEEE
T ss_pred hc----CcccCceEEEEECCCc------EEEEEe---------CCCCEEEEEcccCcccC--CceEEE-EcCCC-CEEEE
Confidence 22 2223345555542110 000000 00000111100000000 000000 00111 23444
Q ss_pred EECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCC
Q 043572 200 IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQ 277 (997)
Q Consensus 200 a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~ 277 (997)
+..+.+.+|....+ ..++.+.....+.+++|.++.+++|.. ....++|+.++.... ..............+..++
T Consensus 424 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 424 TNDDDLLILQSFTG--DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp ETTSEEEEEETTTC--CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTS
T ss_pred eCCCceEEEeccCC--ceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCC
Confidence 46677778776544 334455567788999999888999974 679999998665432 2222222222233344344
Q ss_pred eEEEE-e-CCeEEEEcc-CCCccccccc--cCCCCCeEEE------------eCcEEEEEE-CCeEEEEecCCC-ceEEE
Q 043572 278 KVLLL-V-DNVGVFVDA-HGQPVGGSLV--FRKSPDAVGE------------LSMYVVVLR-GGKMELYHKKSG-ICVQA 338 (997)
Q Consensus 278 e~Ll~-~-~~~g~fv~~-~G~~~r~~i~--w~~~P~~i~~------------~~PYll~~~-~~~ieI~~~~~~-~lvQ~ 338 (997)
.+|++ . |+...+.+. .|...+ ++. -......+++ ...+|++.. ++.|.|+++.++ ..+++
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 579 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 579 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred CEEEEcCCCCeEEEeeCCCCccee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh
Confidence 55554 3 445555665 444332 221 1233455566 345777665 578999999987 67777
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 580 ~~ 581 (615)
T 1pgu_A 580 LN 581 (615)
T ss_dssp TT
T ss_pred hh
Confidence 53
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.049 Score=71.13 Aligned_cols=236 Identities=10% Similarity=0.004 Sum_probs=135.4
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..++|++. .++.+++|+.+|.+..|....... . ..+. -...+|..+...|+...++.+-.|
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-----------~--~~~~----~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-----------F--SSGV----GHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC-----------E--EECC----CCSSCCCCEEECSSSSCEEEECSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------e--eecc----cCCCceEEEEECCCCCEEEEEcCC
Confidence 35666654 467899999999999998865431 0 1111 156689999999998866665568
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
|++.+|++..-+..........+..++..+
T Consensus 1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------- 1054 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-------------------------------------------------- 1054 (1249)
T ss_dssp SBEEEEETTTTEEECCBCCSSCEEEEEECS--------------------------------------------------
T ss_pred CEEEEEECCCCceEEEecCCCcEEEEEEcC--------------------------------------------------
Confidence 899999987644322122222333333221
Q ss_pred ccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEE-ECCcEEEEEecCCcceeeecCCCCC
Q 043572 190 HCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVG-TVNGYSLFSCVTGQSGVIFTLPDVS 265 (997)
Q Consensus 190 ~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg-~~~~y~lidl~~g~~~~l~~~~~~~ 265 (997)
....++......+.+|....+... +.+. ..+.+.+++|..+ .++.| ......++|+.++.....+. ...
T Consensus 1055 ---~~~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~ 1127 (1249)
T 3sfz_A 1055 ---DSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHN 1127 (1249)
T ss_dssp ---SSEEEEEESSSEEEEEETTTTCCC--EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCS
T ss_pred ---CCcEEEEECCCcEEEEECCCCcee--EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCC
Confidence 112334445566778777655322 2222 2456788888753 46666 44578888987775433222 111
Q ss_pred CCCceEEcCCCCeEEEE-e-CCeEEEEcc-CCCccccc---------cccCCCCCeEEEe--CcEEEEEECCeEEEEecC
Q 043572 266 CPPMLKLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGGS---------LVFRKSPDAVGEL--SMYVVVLRGGKMELYHKK 331 (997)
Q Consensus 266 ~~p~i~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~---------i~w~~~P~~i~~~--~PYll~~~~~~ieI~~~~ 331 (997)
.......+..++.+|++ . |+...+.|. .|...+.. .........+++. ..|+++. .+.|.|.++.
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNVA 1206 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-SSSEEEBCSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-CCeEEEEECC
Confidence 11122334434455554 3 344444554 45543310 1123345566665 3466554 4899999999
Q ss_pred CCceEEEEecC
Q 043572 332 SGICVQAVTFG 342 (997)
Q Consensus 332 ~~~lvQ~i~~~ 342 (997)
++..++++...
T Consensus 1207 ~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1207 TGDSSQTFYTN 1217 (1249)
T ss_dssp SCBCCCCCCCS
T ss_pred CCceeeeeecc
Confidence 99888877543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.43 Score=50.50 Aligned_cols=238 Identities=12% Similarity=0.007 Sum_probs=125.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|.+....... ....+. -...+|..+.. +.+.++++-.
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~~~~~~---~~~~~i~~~~~--~~~~l~~~~~ 122 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-----------PLYTLI---GHQGNVCSLSF--QDGVVISGSW 122 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-----------C-CEEC---CCSSCEEEEEE--ETTEEEEEET
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-----------cccchh---hcccCEEEEEe--cCCEEEEEeC
Confidence 4567787754 6689999999999999887654211 111111 15668888877 4555666556
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|+.+++|+.. .+..... ....+..++..+.
T Consensus 123 d~~i~~~d~~--~~~~~~~~~~~~v~~~~~~~~----------------------------------------------- 153 (313)
T 3odt_A 123 DKTAKVWKEG--SLVYNLQAHNASVWDAKVVSF----------------------------------------------- 153 (313)
T ss_dssp TSEEEEEETT--EEEEEEECCSSCEEEEEEEET-----------------------------------------------
T ss_pred CCCEEEEcCC--cEEEecccCCCceeEEEEccC-----------------------------------------------
Confidence 8899999822 1111111 1112222222110
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEEC-CcEEEEEecCCcceeeecCCCC
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++. ...|.+|. .+.............+.++.|.. +.++.|.. ....++|+.+++....+....
T Consensus 154 ----~~-~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~- 225 (313)
T 3odt_A 154 ----SE-NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHE- 225 (313)
T ss_dssp ----TT-TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS-
T ss_pred ----CC-CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCC-
Confidence 11 1234443 34577766 33222222222455678898874 35666654 468889998876554444221
Q ss_pred CCCCceEEcCCCCeEEEEe-CCeEEEEcc-CCCccccccccCC-CCCeEEEe--CcEEEEEECCeEEEEecCCCceEEEE
Q 043572 265 SCPPMLKLLSKEQKVLLLV-DNVGVFVDA-HGQPVGGSLVFRK-SPDAVGEL--SMYVVVLRGGKMELYHKKSGICVQAV 339 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~i~w~~-~P~~i~~~--~PYll~~~~~~ieI~~~~~~~lvQ~i 339 (997)
.......+..++.++.+. |+...+.|. .|.+.+ .+.-.. ....+.+. ..++.+-.++.|.|+++.++.++...
T Consensus 226 -~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 226 -SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ-VITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE-EEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred -ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE-EEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 111122333333555554 456666664 444332 222222 22344443 23555556789999999988777666
Q ss_pred ecCC
Q 043572 340 TFGG 343 (997)
Q Consensus 340 ~~~~ 343 (997)
.+..
T Consensus 304 ~~~~ 307 (313)
T 3odt_A 304 EIKG 307 (313)
T ss_dssp ----
T ss_pred hhhh
Confidence 5543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.42 Score=62.24 Aligned_cols=240 Identities=10% Similarity=0.016 Sum_probs=138.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.+|.+..|....... ...++ -...+|..+...|+.+.++++-.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--------------~~~~~---~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--------------LLDIK---AHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--------------EEEec---cCCCCEEEEEEecCCCEEEEEeC
Confidence 3578888764 66899999999999998865431 11111 15668999999999886666556
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|.+|++..-.++.... ....++.++..+.
T Consensus 678 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------------- 710 (1249)
T 3sfz_A 678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK----------------------------------------------- 710 (1249)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------------------------------
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEecC-----------------------------------------------
Confidence 8899999987654433221 1122333332210
Q ss_pred ccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
+....++.+.. ..|.+|.+..+... ..+. ..+.+.+++|.. +.++.|.. ....+.|+.++.....+...
T Consensus 711 ----~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 711 ----SNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp ----SSCCEEEEEETTSCEEEEETTSSSEE--EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred ----CCceEEEEEeCCCeEEEEECCCcchh--heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 01123444443 45778877655322 2221 345678898884 45777755 56889999887654443322
Q ss_pred CC-----------CCCCceEEc-CCCCeEEEEeCCeEEEEccC-CCccccccc--cCCCCCeEEEe--CcEEEEEE-CCe
Q 043572 263 DV-----------SCPPMLKLL-SKEQKVLLLVDNVGVFVDAH-GQPVGGSLV--FRKSPDAVGEL--SMYVVVLR-GGK 324 (997)
Q Consensus 263 ~~-----------~~~p~i~~~-~~~~e~Ll~~~~~g~fv~~~-G~~~r~~i~--w~~~P~~i~~~--~PYll~~~-~~~ 324 (997)
.. ........+ +++..++++.++...+++.. |.... .+. -......+++. ..++++.. ++.
T Consensus 785 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA-EIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE-EEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred ccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee-EEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 10 001111223 33445555666666666653 33221 111 12333444443 34665543 678
Q ss_pred EEEEecCCCceEEEEec
Q 043572 325 MELYHKKSGICVQAVTF 341 (997)
Q Consensus 325 ieI~~~~~~~lvQ~i~~ 341 (997)
|.|.++.++..++++.-
T Consensus 864 v~vwd~~~~~~~~~~~~ 880 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRG 880 (1249)
T ss_dssp EEEEETTTTEEEEEECC
T ss_pred EEEEEcCCCceeeecCC
Confidence 99999999988877753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.32 Score=55.43 Aligned_cols=165 Identities=10% Similarity=0.017 Sum_probs=97.4
Q ss_pred eeeEEeec--CCeE-EEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 33 SISPISDC--QVLI-YIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 33 ~I~ci~~~--~~~l-~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
.|+|++.. ++.| +.|+.+|.+..|.+...... ....+.. .-...+|..+..-|+...++++-.|
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~------------~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN------------VLKLRKR-FCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS------------CEEEEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc------------eeeeeec-ccCCCCceEEEEcCCCCEEEEEeCC
Confidence 58888864 5565 78999999999999731110 0111110 0134679999999998877775567
Q ss_pred CeEEEeecCcccccc----ccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 110 QCLFLTDSLLTQPLK----KLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~----~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
+.+++|++....... .+. -...++.++..+..
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~------------------------------------------- 207 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDS------------------------------------------- 207 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECT-------------------------------------------
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCC-------------------------------------------
Confidence 899999987654332 111 12234555443310
Q ss_pred hhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 185 KEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++...++.+. ...|.+|.+..+......-......|.+++|. +..|+.|.. ....++|+.+|+....++
T Consensus 208 -------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 208 -------DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp -------TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred -------CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 0012344443 45688888875532211011123567888886 556777754 578899999887655444
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.19 Score=57.14 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=49.6
Q ss_pred eeeeEEeec---CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC---QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~---~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|+|++.+ ++.|..|+.||.+..|.+...... ....+.. ...+|..|..-|..+..|+ +-
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~~~~g----H~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFIKGIG----AGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEECCCS----SSCCCCEEEECSSCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEEEccC----CCCCEEEEEEeCCCCCEEEEEe
Confidence 469999975 346889999999999987654321 0111111 4668999999886444554 33
Q ss_pred cCCeEEEeecC
Q 043572 108 CDQCLFLTDSL 118 (997)
Q Consensus 108 ~d~~l~~~~l~ 118 (997)
.||+|.+|++.
T Consensus 185 ~D~~v~iwd~~ 195 (435)
T 4e54_B 185 MEGTTRLQDFK 195 (435)
T ss_dssp SSSCEEEEETT
T ss_pred CCCEEEEeecc
Confidence 48899999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.52 Score=55.53 Aligned_cols=243 Identities=12% Similarity=0.006 Sum_probs=135.2
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCc-ceEEEeec--ccCcEE
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSP-VESIFVLD--DVGKVL 104 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~qi~vl~--~~~~lL 104 (997)
....|+|++.. ++.|+.|+ +|.+..|.+....... +....+. -...+ |..+..-| +.+.++
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~----------~~~~~~~---~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV----------PPVVQFT---GHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS----------CSEEEEC---TTTTSCEEEEEECSSTTCCEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc----------ccceEEe---cCCCceEEEEEECcCCCCCEEE
Confidence 34567776654 56788887 7889999887432100 0111111 25667 99999999 888666
Q ss_pred EEecCCeEEEeecCcc--------ccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccC
Q 043572 105 LLFCDQCLFLTDSLLT--------QPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGS 175 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l--------~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 175 (997)
++-.||+|.+|++..- ....... ....+..++..+
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------ 126 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF------------------------------------ 126 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT------------------------------------
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC------------------------------------
Confidence 6556889999998532 1111111 111233333221
Q ss_pred ccccCCccchhcccccCCceEEEEEECce---EEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC---EEEEEEC-CcEEE
Q 043572 176 GIKANGVKVKEEEQHCRGDNVFAVIIGKR---LVLIELVNGSFVILKEIQ-CMDGVKTMVWLND---SIIVGTV-NGYSL 247 (997)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~l~Va~kkk---i~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~---~l~vg~~-~~y~l 247 (997)
++ ..++++...+ ..++-|..+.. ...+. ..+.+.++.|..+ .++.|.. ....+
T Consensus 127 ----------------~~-~~l~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 127 ----------------EG-RRLCVVGEGRDNFGVFISWDSGNS--LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp ----------------TS-SEEEEEECCSSCSEEEEETTTCCE--EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred ----------------CC-CEEEEeccCCCCccEEEEEECCCc--ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 11 2355555442 45555654422 22222 2456789999854 4666654 57888
Q ss_pred EEecCCcceeeecCCCCCC-CCceEEcCCC-CeEEE-Ee-CCeEEEEcc-CCCcccccc-----ccCCCCCeEEE-eCcE
Q 043572 248 FSCVTGQSGVIFTLPDVSC-PPMLKLLSKE-QKVLL-LV-DNVGVFVDA-HGQPVGGSL-----VFRKSPDAVGE-LSMY 316 (997)
Q Consensus 248 idl~~g~~~~l~~~~~~~~-~p~i~~~~~~-~e~Ll-~~-~~~g~fv~~-~G~~~r~~i-----~w~~~P~~i~~-~~PY 316 (997)
+|+.+++....+....... ......+..+ +.+|+ +. ++...+.|. .|...+ .+ .-......+.+ ...+
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 266 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQK 266 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESSSSE
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE-EecccccccCCceEEEEEcCCCE
Confidence 9987776544444221100 1112333333 45554 43 455666664 454432 22 11233345555 4557
Q ss_pred EEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 317 VVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 317 ll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+++.. ++.|.|+++.++..++++...
T Consensus 267 l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 267 FATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 77666 578999999999999998876
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.22 Score=62.66 Aligned_cols=298 Identities=12% Similarity=0.118 Sum_probs=148.9
Q ss_pred CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 41 QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 41 ~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
++.|+.|+.||.+..+.+....-... ...+ ..+.+.+. -....|..+..-|+...+.++..||+|++|++..
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~------~~~~-~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDN------ASFE-VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTT------BCEE-EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEecCCCcEEEEECCCccccCC------ceEE-eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence 56799999999999999875421000 0000 00000000 1345899999999999888877899999999865
Q ss_pred cccccc-----------------cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 120 TQPLKK-----------------LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 120 l~~~~~-----------------~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
.+.... +...++...+... .+++. -..+...+.....|- |.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~g~~~~~~l~~h~---~~ 577 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD----------------RAPTG---VRQGFMPSTAVHANK---GK 577 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGG----------------GCCTT---CSEEEEEEEEECCCS---CS
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccc----------------cCCCC---CCCccceeEEEEcCC---Cc
Confidence 321000 0000000000000 00000 000000000000000 00
Q ss_pred cchhcccccCCceEEEEEECce-EEEEEEeCCeEEE---EEeEe--cCCcceEEEEe-----CC-----EEEEEEC-CcE
Q 043572 183 KVKEEEQHCRGDNVFAVIIGKR-LVLIELVNGSFVI---LKEIQ--CMDGVKTMVWL-----ND-----SIIVGTV-NGY 245 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~kkk-i~i~~~~~~~~~~---~kei~--~~~~~~~l~~~-----~~-----~l~vg~~-~~y 245 (997)
........++ .|+++...+ |.+|......... ++++. -.+.|.+++|. .| .|..|+. ...
T Consensus 578 -V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 578 -TSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp -EEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred -EEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 0000012234 677777654 8898876554322 12221 23458999999 54 4777755 468
Q ss_pred EEEEe---cCCcceeeecCCC--CCCCCc--eEEc----------------------CCCCeEEEEeCCeEEEEcc-CCC
Q 043572 246 SLFSC---VTGQSGVIFTLPD--VSCPPM--LKLL----------------------SKEQKVLLLVDNVGVFVDA-HGQ 295 (997)
Q Consensus 246 ~lidl---~~g~~~~l~~~~~--~~~~p~--i~~~----------------------~~~~e~Ll~~~~~g~fv~~-~G~ 295 (997)
.++|+ .+|+....|.-.. ..-.|+ +.++ ..++.+|+|.+...-.++. .|+
T Consensus 655 ~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k 734 (902)
T 2oaj_A 655 ITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSK 734 (902)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCC
T ss_pred EEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcccc
Confidence 88888 6665322211000 000111 1111 1233566667665555554 566
Q ss_pred ccccccccCCCC--CeE---E--------EeCcEEEEEE-CCeEEEEecCCCceEEEEecCCCCC----CCceecccccC
Q 043572 296 PVGGSLVFRKSP--DAV---G--------ELSMYVVVLR-GGKMELYHKKSGICVQAVTFGGEGG----GQCIATDEECG 357 (997)
Q Consensus 296 ~~r~~i~w~~~P--~~i---~--------~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~~~~----~~~i~~~~~~~ 357 (997)
+.+.. |...- ..+ . -....|+.++ .+.|+|+++.+++.++++.++...- +.+.+. .
T Consensus 735 ~~~k~--~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~----~ 808 (902)
T 2oaj_A 735 STHKG--FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVL----R 808 (902)
T ss_dssp EEEEE--CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEEC----T
T ss_pred ceeeE--cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEc----C
Confidence 55422 54431 111 1 1123444444 6799999999999999999876431 111121 2
Q ss_pred CCcEEEEEcCCeEEEEeec
Q 043572 358 AGKLLVVATPTKVICYQKV 376 (997)
Q Consensus 358 ~g~~~~v~s~~~V~~l~~~ 376 (997)
.|++++..+++++.++...
T Consensus 809 ~G~~~~~~~~~e~~~~~~~ 827 (902)
T 2oaj_A 809 NGDIAIRVSEFQASLFSTV 827 (902)
T ss_dssp TSCEEEECSSSEEEEEEEE
T ss_pred CCCEEEEeChhheEEEEEE
Confidence 4678888888888776643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.17 Score=55.37 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=100.9
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....... ....+|..+...|. .+.++
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------~~~~~~~---~~~~~v~~~~~~~~~~~~~l~ 119 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPLLL 119 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce------------eEeeeec---CCCcceEEEEeCCCCCCCEEE
Confidence 3578898864 67899999999999999875421 0111111 14568999999998 67666
Q ss_pred EEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.|++|.+|++........ ......++.++..+........ . .+
T Consensus 120 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------~---------------~~ 168 (379)
T 3jrp_A 120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE----------------H---------------NG 168 (379)
T ss_dssp EEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------------------------------------
T ss_pred EecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc----------------c---------------cC
Confidence 656688999999876532211 1223345555554321000000 0 00
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCC--eEEEEEeEec-CCcceEEEEeCC-----EEEEEEC-CcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNG--SFVILKEIQC-MDGVKTMVWLND-----SIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~--~~~~~kei~~-~~~~~~l~~~~~-----~l~vg~~-~~y~lidl~ 251 (997)
..++ ..++++. ...|.+|....+ .+.....+.. ...+.+++|..+ .|+.|.. ....++|+.
T Consensus 169 --------~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 169 --------TKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ---------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred --------CCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 0012 2344444 456889988754 2344444432 356789999844 4666654 568999998
Q ss_pred CCc
Q 043572 252 TGQ 254 (997)
Q Consensus 252 ~g~ 254 (997)
++.
T Consensus 240 ~~~ 242 (379)
T 3jrp_A 240 NEQ 242 (379)
T ss_dssp STT
T ss_pred CCC
Confidence 775
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.043 Score=60.69 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=87.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.+|.+..|....... +....++ -...+|..+...|+.+.++.+-.|
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW------------KHARTFS---DHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE------------EECCCBC---CCSSCEEEEEECTTTCCEEEEETT
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCce------------EEEEEEe---cCCceEEEEEEeCCCCEEEEEeCC
Confidence 456776654 66899999999999999875420 0011111 156689999999998867665568
Q ss_pred CeEEEeecCccc---ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQ---PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~---~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++|++|++..-. +.... .-...++.++..+.
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------- 111 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN--------------------------------------------- 111 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTT---------------------------------------------
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---------------------------------------------
Confidence 999999987643 22211 11223444443221
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCe-EEEEEeEe--cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCC
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGS-FVILKEIQ--CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~-~~~~kei~--~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g 253 (997)
+. .++++. .+.|.+|.+..+. +...+.+. ....+.+++|.. ..|+.|.. ....++|+.++
T Consensus 112 -------~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 112 -------ED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp -------SS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCS
T ss_pred -------CC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEec
Confidence 11 233333 4457777665542 22233343 245789999984 45777755 46889998643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.48 Score=51.64 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=93.8
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++. .++.|+.|+.+|.+..|.+...... ......+. -....|..+...++.. ++.+-.|
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~----------~~~~~~~~---~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN----------VRVSRELA---GHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS----------CEEEEEEE---CCSSCEEEEEEEETTE-EEEEETT
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc----------ceeEEEec---CCCccEEEEEECCCCc-EEEEECC
Confidence 34666664 3668999999999999998654321 01111111 1456788888776654 6665678
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|++..-+++..+.. ...|..++..+
T Consensus 164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------------------------- 194 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAP------------------------------------------------- 194 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEECCCCcEEEEEcCCCCceEEEEECC-------------------------------------------------
Confidence 9999999876544332221 12244444322
Q ss_pred cccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 189 QHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 189 ~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++. .++.+ ..+.|.+|....+.. .+.+. ....+.+++|. ++.++.|.. ....++|+.++.....+.
T Consensus 195 ---~~~-~l~sg~~d~~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 195 ---DTR-LFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp ---TSS-EEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CCC-EEEEEeCCCcEEEEECCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 111 23333 345678877665422 22232 24567899997 445777754 568899998775544444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=1 Score=48.25 Aligned_cols=234 Identities=10% Similarity=0.061 Sum_probs=124.5
Q ss_pred CCeEEEE-cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC-CeEEEeecC
Q 043572 41 QVLIYIG-TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD-QCLFLTDSL 118 (997)
Q Consensus 41 ~~~l~iG-T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d-~~l~~~~l~ 118 (997)
++.+|++ ..+|.+..|.+..... .+...... ....+..+.+-|+.+.++++-.+ +.+.+|++.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGA-----------LTLTQVVD----VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSC-----------EEEEEEEE----CSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCc-----------EEEeeeEe----cCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 4578888 7799999998864221 01111111 33467888888988867774444 799999986
Q ss_pred c----cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCc
Q 043572 119 L----TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGD 194 (997)
Q Consensus 119 ~----l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (997)
. +..+..+....++..++..+ ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~----------------------------------------------------dg- 95 (343)
T 1ri6_A 69 PDDGALTFAAESALPGSLTHISTDH----------------------------------------------------QG- 95 (343)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECT----------------------------------------------------TS-
T ss_pred CCCCceeeccccccCCCCcEEEEcC----------------------------------------------------CC-
Confidence 1 11111110000111122111 11
Q ss_pred eEEEEEE--CceEEEEEEeCC-eEEEEEeEecCCcceEEEEeC--CEEEEEE--CCcEEEEEecC-Ccceeee----cCC
Q 043572 195 NVFAVII--GKRLVLIELVNG-SFVILKEIQCMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVT-GQSGVIF----TLP 262 (997)
Q Consensus 195 ~~l~Va~--kkki~i~~~~~~-~~~~~kei~~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~-g~~~~l~----~~~ 262 (997)
..++++. ...|.+|....+ .....+.+.....+.++.|.. +.++++. .....++|+.+ |....+. ...
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 2355554 456888887533 234445555556688888884 4587775 46788999987 6554322 221
Q ss_pred CCCCCCceEEcCCCCeEE-EEe--CCeEEEEccC---CCcccc-ccc-cC------CCCCeEEEe--CcEEEEEE--CCe
Q 043572 263 DVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDAH---GQPVGG-SLV-FR------KSPDAVGEL--SMYVVVLR--GGK 324 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~~---G~~~r~-~i~-w~------~~P~~i~~~--~PYll~~~--~~~ 324 (997)
.+..|.-..+..++.++ ++. ++....++.+ |..... .+. .+ ..|..+++. ..|+++.. .+.
T Consensus 176 -~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 -EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp -TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 12344444454444544 443 3445555543 332111 110 11 123346665 34777654 478
Q ss_pred EEEEecC--CC--ceEEEEecCC
Q 043572 325 MELYHKK--SG--ICVQAVTFGG 343 (997)
Q Consensus 325 ieI~~~~--~~--~lvQ~i~~~~ 343 (997)
|.|+++. ++ ..++.++...
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~ 277 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTET 277 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSS
T ss_pred EEEEEEcCCCCceEEeeeecCCC
Confidence 9999987 33 4455665433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.043 Score=60.20 Aligned_cols=114 Identities=6% Similarity=-0.086 Sum_probs=68.1
Q ss_pred CCcceEEEeec--ccCcEEEEecCCeEEEeecCcccccccc--ccccceEEEEeecccCCccccccccccccccccccCC
Q 043572 88 DSPVESIFVLD--DVGKVLLLFCDQCLFLTDSLLTQPLKKL--GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANAST 163 (997)
Q Consensus 88 ~~~I~qi~vl~--~~~~lLv~l~d~~l~~~~l~~l~~~~~~--~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (997)
..+|..+..-| ..+.++.+-.||++++|++..-.+.... ..-..++.++.++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p------------------------ 180 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK------------------------ 180 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT------------------------
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC------------------------
Confidence 35799999999 7775665566899999998764432111 0011122233221
Q ss_pred cccchhhhhccCccccCCccchhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec--CCcceEEEEeC--CEEE
Q 043572 164 STGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC--MDGVKTMVWLN--DSII 238 (997)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~--~~~~~~l~~~~--~~l~ 238 (997)
++ ..++++ ....|.+|....+.... ..+.. ...|.+++|.. ..|+
T Consensus 181 ----------------------------dg-~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 181 ----------------------------DS-LLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp ----------------------------TS-CEEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEE
T ss_pred ----------------------------CC-CEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEE
Confidence 11 234443 34568888876653220 22222 46789999984 4588
Q ss_pred EEECCcEEEEEecCCcc
Q 043572 239 VGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 239 vg~~~~y~lidl~~g~~ 255 (997)
.|......+.|+.++..
T Consensus 231 s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 231 VECDQTVVCFDLRKDVG 247 (343)
T ss_dssp EEESSBEEEEETTSSTT
T ss_pred EEeCCeEEEEEcCCCCc
Confidence 88878999999987654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.38 Score=52.32 Aligned_cols=143 Identities=14% Similarity=0.025 Sum_probs=88.3
Q ss_pred EEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC-CEEEEEECC------------cEEEEEecCCcceeee
Q 043572 196 VFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN-DSIIVGTVN------------GYSLFSCVTGQSGVIF 259 (997)
Q Consensus 196 ~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~-~~l~vg~~~------------~y~lidl~~g~~~~l~ 259 (997)
++.|+. .+.|.++....+ +..+.+.....|..+.+.. +.++++... ....+|..+++....+
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~--~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETD--KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTT--EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCC--eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence 355553 455666665543 3445566666777777764 568887653 5888998888776655
Q ss_pred cCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccC-CCcccc-cccc-CCCCCeEEEe--CcEEEEEE------CCeEEEE
Q 043572 260 TLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAH-GQPVGG-SLVF-RKSPDAVGEL--SMYVVVLR------GGKMELY 328 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~-G~~~r~-~i~w-~~~P~~i~~~--~PYll~~~------~~~ieI~ 328 (997)
..+. +..|.-..+..++..|.+.+.....+|.. |..... .+.. ...|..+++. .-+|++.. .+.|.++
T Consensus 220 ~~~~-g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 220 KFKL-GDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp ECCT-TCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred ecCC-CCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 5532 12465555654446666655544456654 443221 1221 3568888885 35666654 4679999
Q ss_pred ecCCCceEEEEecC
Q 043572 329 HKKSGICVQAVTFG 342 (997)
Q Consensus 329 ~~~~~~lvQ~i~~~ 342 (997)
+.. ++++++++..
T Consensus 299 d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 299 SPQ-GKLIDEFYVG 311 (328)
T ss_dssp CTT-CCEEEEEEEE
T ss_pred CCC-CCEEEEEEec
Confidence 987 9999998763
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.15 Score=55.47 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred eeeeEEeec-----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEee------ccc
Q 043572 32 LSISPISDC-----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVL------DDV 100 (997)
Q Consensus 32 ~~I~ci~~~-----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl------~~~ 100 (997)
..|+|++.. ++.|+.|+.+|.+..|.+..... ....++ -...+|..+... |+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~---~~~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------------PVYSVK---GHKEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------------CSEEEC---CCSSCEEEEEEESGGGCC-CC
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------------cEEEEE---ecccceEEEeeccccccCCCc
Confidence 478888865 36799999999999998875431 011111 155688888654 455
Q ss_pred CcEEEEecCCeEEEeecCccc-ccccccc-----ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhcc
Q 043572 101 GKVLLLFCDQCLFLTDSLLTQ-PLKKLGF-----LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFG 174 (997)
Q Consensus 101 ~~lLv~l~d~~l~~~~l~~l~-~~~~~~~-----~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 174 (997)
+.++.+-.|++|.+|++..-. +...+.. ...+..++..+.. +
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~----------- 177 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY---------------------N----------- 177 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC---------------------C-----------
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc---------------------C-----------
Confidence 555554557899999987654 3322211 1123333321100 0
Q ss_pred CccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-----CCEEEEEEC-CcEEE
Q 043572 175 SGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-----NDSIIVGTV-NGYSL 247 (997)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-----~~~l~vg~~-~~y~l 247 (997)
.++ ..++++.. ..|.+|....+.. .........+.++.|. ++.+++|.. ....+
T Consensus 178 ----------------~~~-~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 178 ----------------QEE-RVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp -----------------CC-CEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred ----------------CCC-CEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 011 23555554 5788888776544 2334456788999997 355777765 46788
Q ss_pred EEecCCcce
Q 043572 248 FSCVTGQSG 256 (997)
Q Consensus 248 idl~~g~~~ 256 (997)
+|+.++...
T Consensus 239 ~d~~~~~~~ 247 (357)
T 3i2n_A 239 FDMRTQHPT 247 (357)
T ss_dssp EEEEEEETT
T ss_pred EeCcCCCcc
Confidence 999876543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.68 Score=49.66 Aligned_cols=242 Identities=11% Similarity=0.096 Sum_probs=126.5
Q ss_pred eeeEEee--cCCeEEEEcCC-ceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-
Q 043572 33 SISPISD--CQVLIYIGTQS-GSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC- 108 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~-G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~- 108 (997)
.+.+++. .++.||+++.+ |.+..|.+...... ........ ....+..+.+-|+.+.++++-.
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESA----LPGSLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEE----CSSCCSEEEECTTSSEEEEEETT
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccc----cCCCCcEEEEcCCCCEEEEEecC
Confidence 4555554 46679999887 99999998743210 01111111 1226788888898886766333
Q ss_pred CCeEEEeecC---ccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 DQCLFLTDSL---LTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 d~~l~~~~l~---~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++.+.+|++. ...+...+....++..++..+
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~---------------------------------------------- 138 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP---------------------------------------------- 138 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT----------------------------------------------
T ss_pred CCeEEEEECCCCccccccccccCCCCceEEEECC----------------------------------------------
Confidence 6789999873 111111111001111111110
Q ss_pred hcccccCCceEEEEEE--CceEEEEEEeC-CeEEEEE--eEec--CCcceEEEEeC--CEEEEEE--CCcEEEEEec--C
Q 043572 186 EEEQHCRGDNVFAVII--GKRLVLIELVN-GSFVILK--EIQC--MDGVKTMVWLN--DSIIVGT--VNGYSLFSCV--T 252 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~--kkki~i~~~~~-~~~~~~k--ei~~--~~~~~~l~~~~--~~l~vg~--~~~y~lidl~--~ 252 (997)
++ ..++++. ..+|.+|.+.. +...... .+.. ...+..+.|.. ..++++. .....++|++ +
T Consensus 139 ------dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 139 ------DN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp ------TS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred ------CC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 12 2345553 56788888876 5555433 3333 23678888874 4576665 3568899985 3
Q ss_pred Ccceee--e---cCC-CCCCCCceEEcCCCCeEEE-Ee--CCeEEEEccC--C-Cccc-cccccCCCCCeEEEe--CcEE
Q 043572 253 GQSGVI--F---TLP-DVSCPPMLKLLSKEQKVLL-LV--DNVGVFVDAH--G-QPVG-GSLVFRKSPDAVGEL--SMYV 317 (997)
Q Consensus 253 g~~~~l--~---~~~-~~~~~p~i~~~~~~~e~Ll-~~--~~~g~fv~~~--G-~~~r-~~i~w~~~P~~i~~~--~PYl 317 (997)
|....+ + +.+ .....|.-..+..++.+|+ +. ++...+++.. + .... ..+.-...|..+++. ..++
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 291 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEE
Confidence 443222 1 111 0011232334443444554 43 3445555544 2 2211 123333448888886 4577
Q ss_pred EEEE--CCeEEEEec--CCCce--EEEEec
Q 043572 318 VVLR--GGKMELYHK--KSGIC--VQAVTF 341 (997)
Q Consensus 318 l~~~--~~~ieI~~~--~~~~l--vQ~i~~ 341 (997)
++.. .+.|.|+.+ .++.+ +..++.
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence 7765 478999854 46654 444544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.092 Score=58.10 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=121.0
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
..|+|++.. ++.++.|+.+|.+..|.+...... ......... ...+|..+...|+.+.++.+-.|+
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~----h~~~V~~v~~spdg~~l~sgs~dg 161 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEKESL---------LVNKFAKYE----HDDIVKTLSVFSDGTQAVSGGKDF 161 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECC----CSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeecccccee---------EEEeeccCC----CCCCEEEEEECCCCCEEEEEeCCC
Confidence 358888864 567999999999999887654321 000111111 456899999999988666656689
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|++|++..-+++..+.. ...+..++..+
T Consensus 162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-------------------------------------------------- 191 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACP-------------------------------------------------- 191 (357)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT--------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEcc--------------------------------------------------
Confidence 999999876544332211 22234333221
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++...++.+ ..+.|.+|....++........ ....+.+++|.. ..++.|.. ....++|+.+++....+....
T Consensus 192 --~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~ 269 (357)
T 4g56_B 192 --GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269 (357)
T ss_dssp --TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS
T ss_pred --CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc
Confidence 011123333 3456777665443222211111 233568898872 34667755 468899998876554444321
Q ss_pred CCCCC-ceEEc-CCCCeEEEE--eCCeEEEEccC-CCccccccccCCCCCeEEEe---CcEEEEEE-CCeEEEEecCC
Q 043572 264 VSCPP-MLKLL-SKEQKVLLL--VDNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL---SMYVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 264 ~~~~p-~i~~~-~~~~e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~---~PYll~~~-~~~ieI~~~~~ 332 (997)
.+ ....+ ++++.+|++ .|....+.|.. |+..+ .+.=......+++. ..+++... ++.|.|.++.+
T Consensus 270 ---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 270 ---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 12 12223 333355553 34556666653 32221 11112233455553 12454443 57788888764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.25 Score=55.74 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=51.7
Q ss_pred eeeeEEeecC----CeEEEEcCCceEEEEEeCCCCCC---------CCCCCC----CCCCc---c---------cc-ccc
Q 043572 32 LSISPISDCQ----VLIYIGTQSGSLILLSLDPTAAT---------TLHVPN----TTPSQ---Q---------HV-SFL 81 (997)
Q Consensus 32 ~~I~ci~~~~----~~l~iGT~~G~ll~y~~~~~~~~---------~~~~~~----~~~~~---~---------~~-~~~ 81 (997)
..|+|++... +.|+.|+.||.+..|.+...... .+.... ..... . .. .+.
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 4588888653 46999999999999988642210 000000 00000 0 00 011
Q ss_pred cccccCCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 82 KTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 82 ~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
. -...+|..+...|+.+.++.+ .|++|.+|++..
T Consensus 174 ~---~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 207 (447)
T 3dw8_B 174 N---AHTYHINSISINSDYETYLSA-DDLRINLWHLEI 207 (447)
T ss_dssp S---CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred c---CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence 1 156689999999988866664 899999999873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.29 Score=55.28 Aligned_cols=255 Identities=10% Similarity=0.084 Sum_probs=137.0
Q ss_pred eeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++... +.|+.|+.||.+..|.+........ ......+ . ...+|..|...|+.+.++++-.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-------~~~~~~~-~----h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-------YSSSLTY-D----CSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-------CSCSEEE-E----CSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-------cceeeec-c----CCCCEEEEEEeCCCCEEEEEeC
Confidence 5899988754 5799999999999999865211000 0000111 1 4678999999998887777666
Q ss_pred CCeEEEeecCcc---ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 109 DQCLFLTDSLLT---QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 109 d~~l~~~~l~~l---~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
||+|.+|++..- .... ......+..+..++.......+ +
T Consensus 132 dg~i~vwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~-----~-------------------------------- 173 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVK-FLNCECIRKINLKNFGKNEYAV-----R-------------------------------- 173 (437)
T ss_dssp TSEEEEEEEEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEE-----E--------------------------------
T ss_pred CCEEEEEEeccccCCceee-ccccceeEEEEccCcccccCce-----E--------------------------------
Confidence 899999998521 1110 0111122222222100000000 0
Q ss_pred hcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEec---CCcceEEEEe--CCEEEEEECC-cEEEEEecCCcceee
Q 043572 186 EEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQC---MDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSGVI 258 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~---~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~~l 258 (997)
..+........++++.. ..|.+|....++ .++.+.. .+.+.+++|. +..++.|... ...++|+.++.....
T Consensus 174 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 174 MRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 00000011133444444 567888776543 2333333 3678999996 4557777665 588999988766555
Q ss_pred ecCCCCCCCCceEEc------CCCCeEEEEe--CCeEEEEccC-CCcccc---------ccccCC---------------
Q 043572 259 FTLPDVSCPPMLKLL------SKEQKVLLLV--DNVGVFVDAH-GQPVGG---------SLVFRK--------------- 305 (997)
Q Consensus 259 ~~~~~~~~~p~i~~~------~~~~e~Ll~~--~~~g~fv~~~-G~~~r~---------~i~w~~--------------- 305 (997)
+...... + +..+ ..++.+|++. |+...+.|.. |...+. .+.|+.
T Consensus 252 ~~~~~~~--~-v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 252 WSFGDHA--P-ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EBCTTCE--E-EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EecCCCC--c-eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5433211 2 2221 2334455553 3344445542 332110 122321
Q ss_pred --CCCeEEEeC-cEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 306 --SPDAVGELS-MYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 306 --~P~~i~~~~-PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
....+++.. .+|++.. ++.|.|.++.++..++++.-
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEec
Confidence 133455553 3566554 68999999999998888754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.3 Score=54.95 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=53.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|.+..... ...+. -...+|..+...|+.+.++.+-.|
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~--------------~~~~~---~h~~~V~~v~~~p~~~~l~s~s~D 213 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--------------IRTMH---GHDHNVSSVSIMPNGDHIVSASRD 213 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE--------------EECCC---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------------eEEEc---CCCCCEEEEEEeCCCCEEEEEeCC
Confidence 478888864 56799999999999998754321 11111 145689999999998867665668
Q ss_pred CeEEEeecCccc
Q 043572 110 QCLFLTDSLLTQ 121 (997)
Q Consensus 110 ~~l~~~~l~~l~ 121 (997)
+++.+|++..-.
T Consensus 214 ~~i~~wd~~~~~ 225 (410)
T 1vyh_C 214 KTIKMWEVQTGY 225 (410)
T ss_dssp SEEEEEETTTCC
T ss_pred CeEEEEECCCCc
Confidence 999999986643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.49 Score=50.57 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=99.4
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+......... .......... -...+|..+...|. .+.++
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-----RRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----CSEEEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----cCcceeeeec---ccCCceeEEEEcCCCCCcEEE
Confidence 3578999874 678999999999999999765421000 0001111111 25678999999998 67666
Q ss_pred EEecCCeEEEeecCccccccccccc--------------cceEEEEeecccCCccccccccccccccccccCCcccchhh
Q 043572 105 LLFCDQCLFLTDSLLTQPLKKLGFL--------------KGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLL 170 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~~~~~--------------kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 170 (997)
++-.|+.|++|++....++...... ..+..++..+.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------------------------ 178 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS------------------------------ 178 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC------------------------------
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC------------------------------
Confidence 6566899999999875543322111 11111111110
Q ss_pred hhccCccccCCccchhcccccCCceEEEEEECceEEEEEEeCC-eEEEEEeEe-cCCcceEEEEeCC------EEEEEEC
Q 043572 171 QKFGSGIKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNG-SFVILKEIQ-CMDGVKTMVWLND------SIIVGTV 242 (997)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~-~~~~~kei~-~~~~~~~l~~~~~------~l~vg~~ 242 (997)
. .....++++......+|..... .......+. ....+.++.|..+ .|+.|..
T Consensus 179 -------------------~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 179 -------------------R-FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp -------------------S-SSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred -------------------C-CCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 0 0123577777777666655443 444444443 2456899999865 3666654
Q ss_pred -CcEEEEEecCCc
Q 043572 243 -NGYSLFSCVTGQ 254 (997)
Q Consensus 243 -~~y~lidl~~g~ 254 (997)
....++|+.++.
T Consensus 239 dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 239 DGRIRIFKITEKL 251 (351)
T ss_dssp TSCEEEEEEEECC
T ss_pred CCeEEEEeCCCCc
Confidence 568999998664
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.62 Score=51.40 Aligned_cols=240 Identities=11% Similarity=-0.001 Sum_probs=128.5
Q ss_pred ceeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC---cE
Q 043572 30 RSLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG---KV 103 (997)
Q Consensus 30 ~~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~---~l 103 (997)
....|+|++... +.|+.|+.+|.+..|.+..... ..... ...++..+...+... .+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--------------ADVFN----FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--------------EEEEE----CSSCEEEEEECSSCSSCCEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--------------ceecc----CCCceeeeEeecCCCCCcEE
Confidence 456788988643 4699999999999998875331 11111 345788888887543 56
Q ss_pred EEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+++-.|+.|++|++..-.+...+. ....++.++..+.
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------------ 197 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR------------------------------------------ 197 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS------------------------------------------
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC------------------------------------------
Confidence 665668899999997755443332 1223455554321
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEe-------------EecCCcceEEEEeC--CEEEEEEC-C
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKE-------------IQCMDGVKTMVWLN--DSIIVGTV-N 243 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~ke-------------i~~~~~~~~l~~~~--~~l~vg~~-~ 243 (997)
+...++++. ...|.+|....+. +..+.. ......+.+++|.. ..|+.|.. .
T Consensus 198 ----------~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 198 ----------YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp ----------CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----------CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 112233333 3457777764331 111100 11234678899974 45777754 5
Q ss_pred cEEEEEecCCcceeeecCCC--CC-CCCc-eEEcCCCCeEEEE-eCCeEEEEcc-CCCccccccccC-CCCCeEEEe--C
Q 043572 244 GYSLFSCVTGQSGVIFTLPD--VS-CPPM-LKLLSKEQKVLLL-VDNVGVFVDA-HGQPVGGSLVFR-KSPDAVGEL--S 314 (997)
Q Consensus 244 ~y~lidl~~g~~~~l~~~~~--~~-~~p~-i~~~~~~~e~Ll~-~~~~g~fv~~-~G~~~r~~i~w~-~~P~~i~~~--~ 314 (997)
...++|+.++.....+.... .. .... .......+.++.+ .++...+.|. .|.+.. .+.-. .....+++. .
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-MLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-EECCCSSCEEEEEEETTT
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-eeccCCCeEEEEEEcCCC
Confidence 78999998876543332211 11 1111 1122223345444 5566666664 344332 22211 223344554 4
Q ss_pred cEEEEEE-CCeEEEEecCCCceEEEEe
Q 043572 315 MYVVVLR-GGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 315 PYll~~~-~~~ieI~~~~~~~lvQ~i~ 340 (997)
.+|++.. ++.|.|.++.+++.+..+.
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp TEEEEEETTSCEEEEEECC--------
T ss_pred CEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 5777665 6789999999987766553
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.42 E-value=1.1 Score=52.33 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=125.0
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|++++.. ++.|+.|+.+|.+..|...... ...+. -...+|..+.+.|+...++.+-.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---------------~~~~~---~h~~~v~~~~~~~~~~~l~t~~~ 323 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---------------LQTLT---GHSSSVWGVAFSPDGQTIASASD 323 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------------EEEEC---CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE---------------EEEEe---cCCCCeEEEEECCCCCEEEEEeC
Confidence 3567787754 5579999999999888743211 11111 14568999999998886666455
Q ss_pred CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 109 DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
|+++.+|++..-....-......+..++..+
T Consensus 324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------------------- 354 (577)
T 2ymu_A 324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP------------------------------------------------- 354 (577)
T ss_dssp TSCEEEEETTSCEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred CCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-------------------------------------------------
Confidence 7899999975421110001112233333221
Q ss_pred cccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECC-cEEEEEecCCcceeeecCCCC
Q 043572 189 QHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVN-GYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~-~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++.. ..+.+|.........+.. ....+.+++|.. ..|+.|... ...++|. +++....+.-.
T Consensus 355 ---~g-~~l~~~~~dg~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~-- 425 (577)
T 2ymu_A 355 ---DG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-- 425 (577)
T ss_dssp ---TS-SEEEEEETTSEEEEEETTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC--
T ss_pred ---CC-CEEEEEeCCCEEEEEcCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC--
Confidence 11 23444444 346777654332222221 245678898874 457777654 5667775 34432222211
Q ss_pred CCCCceEEcCCCCeEEE-Ee-CCeEEEEccCCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 265 SCPPMLKLLSKEQKVLL-LV-DNVGVFVDAHGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
........+..++.+|+ +. |....+.+.+|...+ ++.- ......+++. ..+|++.. ++.|.|.+ .++.++++
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~-~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~ 503 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 503 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE-EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEE
Confidence 11111123333334444 43 456666777766443 1211 1222344443 34666554 56899999 46788887
Q ss_pred Eec
Q 043572 339 VTF 341 (997)
Q Consensus 339 i~~ 341 (997)
+.-
T Consensus 504 ~~~ 506 (577)
T 2ymu_A 504 LTG 506 (577)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.066 Score=59.18 Aligned_cols=158 Identities=8% Similarity=-0.021 Sum_probs=90.9
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+.|+.||.+..|.+...... .....+. -...+|..+...|+.+.++++-.
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~----------~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~ 120 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW----------KQTLVLL----RLNRAATFVRWSPNEDKFAVGSG 120 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CC----------CCEEECC----CCSSCEEEEECCTTSSCCEEEES
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce----------eeeeEec----ccCCceEEEEECCCCCEEEEEec
Confidence 4578888865 567999999999999988754310 0011111 14668999999998887777666
Q ss_pred CCeEEEeecCcccc---ccccc--cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLTQP---LKKLG--FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l~~---~~~~~--~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
|++|++|++..-.+ ...+. ....++.++..+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------------------------------------- 156 (377)
T 3dwl_C 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-------------------------------------------- 156 (377)
T ss_dssp SSCEEECCC-----CCCCEEECSSCCSCEEEEEECT--------------------------------------------
T ss_pred CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC--------------------------------------------
Confidence 89999999876442 11111 122344444332
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCe----------------EEEEEeEecCCcceEEEEeC--CEEEEEEC-C
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGS----------------FVILKEIQCMDGVKTMVWLN--DSIIVGTV-N 243 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~----------------~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~ 243 (997)
++ ..++++. ...|.+|...... -....++.....+.+++|.. ..|+.|.. .
T Consensus 157 --------~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 227 (377)
T 3dwl_C 157 --------NN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS 227 (377)
T ss_dssp --------TS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred --------CC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence 11 1344444 4568888874211 22334443445689999974 45777755 4
Q ss_pred cEEEEEecCCcc
Q 043572 244 GYSLFSCVTGQS 255 (997)
Q Consensus 244 ~y~lidl~~g~~ 255 (997)
...++|+.++..
T Consensus 228 ~i~iwd~~~~~~ 239 (377)
T 3dwl_C 228 SVTIAYPSAPEQ 239 (377)
T ss_dssp EEC-CEECSTTS
T ss_pred cEEEEECCCCCC
Confidence 788999988765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.79 Score=49.60 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=97.2
Q ss_pred eeeeeEEeec------CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc----
Q 043572 31 SLSISPISDC------QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV---- 100 (997)
Q Consensus 31 ~~~I~ci~~~------~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~---- 100 (997)
...|+|++.. +..++.|+.+|.+..|....... ......... .....+|..+...|+.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------IRLLQSYVD-ADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------EEEEEEEEC-SCTTCCEEEEEEEECTTTCC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------EEeeeeccc-cCCCCcEEEEEeccCCCCCC
Confidence 4688999976 44699999999999999874331 000100000 0134679999999884
Q ss_pred CcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 101 GKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 101 ~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
..++++-.||+|.+|++...+++..+. ....++.++..+.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------------------------- 126 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--------------------------------------- 126 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS---------------------------------------
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC---------------------------------------
Confidence 445555568899999988765543332 2233444443220
Q ss_pred CCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEE-EEe-EecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCC
Q 043572 180 NGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVI-LKE-IQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~-~ke-i~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g 253 (997)
++ ..++++. ...|.+|.+..+.... ++. -.....+.++.|. ++.++.|.. ....++|+.++
T Consensus 127 ------------~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 127 ------------DP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp ------------CT-TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred ------------CC-CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 11 2344444 4568888877653322 111 1235578999998 445777754 57899999876
Q ss_pred cc
Q 043572 254 QS 255 (997)
Q Consensus 254 ~~ 255 (997)
..
T Consensus 194 ~~ 195 (366)
T 3k26_A 194 RM 195 (366)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=1.2 Score=48.96 Aligned_cols=159 Identities=13% Similarity=0.000 Sum_probs=97.4
Q ss_pred ceeeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 30 RSLSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 30 ~~~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
....|+|++... +.|+.|+.+|.+..|.+..... ....... -...+|..+...|+.+.++++
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~---~~~~~v~~~~~~~~~~~l~~~ 181 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI------------QVFAKTD---SWDYWYCCVDVSVSRQMLATG 181 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE------------EEEECCC---CSSCCEEEEEEETTTTEEEEE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce------------EEEeccC---CCCCCeEEEEECCCCCEEEEE
Confidence 346889998754 5799999999999998874211 0010000 123579999999998877776
Q ss_pred ecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 107 FCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
-.|+.|.+|++. -.++..+. ....+..++..+
T Consensus 182 ~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~---------------------------------------------- 214 (383)
T 3ei3_B 182 DSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP---------------------------------------------- 214 (383)
T ss_dssp ETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS----------------------------------------------
T ss_pred CCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC----------------------------------------------
Confidence 668899999983 22222211 112344444322
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcce
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSG 256 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~ 256 (997)
++...++.+. ...|.+|.+.... -...+.+.....+.+++|.. ..|+.|.. ....++|+.++...
T Consensus 215 ------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 215 ------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp ------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred ------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 1221344444 4568888887521 11222334567889999975 45776754 57899999887653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.18 Score=54.49 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=91.4
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEe-CCCCCCCCCCCCCCCCcccccccccccc--CCCcceEEEeecccCcEEE
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSL-DPTAATTLHVPNTTPSQQHVSFLKTVSV--ADSPVESIFVLDDVGKVLL 105 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~I~qi~vl~~~~~lLv 105 (997)
..|+|++.. ++ .|+.|+.+|.+..|.+ ..... ..+. - ...+|..|...| .+.++.
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------------~~~~----~~~~~~~v~~l~~~~-~~~l~s 117 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------------QALT----NNEANLGICRICKYG-DDKLIA 117 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--------------EECB----SCCCCSCEEEEEEET-TTEEEE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--------------Eecc----ccCCCCceEEEEeCC-CCEEEE
Confidence 477887754 66 7999999999999987 54321 1110 1 456899999999 665666
Q ss_pred EecCCeEEEeecCc---------cccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 106 LFCDQCLFLTDSLL---------TQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 106 ~l~d~~l~~~~l~~---------l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
+-.|+.|++|++.. ..++..+.....+..++..+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------- 160 (342)
T 1yfq_A 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS------------------------------------- 160 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-------------------------------------
T ss_pred EcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-------------------------------------
Confidence 55688999999876 33333322222233333211
Q ss_pred cccCCccchhcccccCCceEEEEEEC-ceEEEEEEeC-Ce-EEEEEeEecCCcceEEEEeC---CEEEEEECC-cEEEEE
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVN-GS-FVILKEIQCMDGVKTMVWLN---DSIIVGTVN-GYSLFS 249 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~-~~-~~~~kei~~~~~~~~l~~~~---~~l~vg~~~-~y~lid 249 (997)
+ . ++++.. ..|.+|.... .. ............+.++.|.. +.+++|... ...+.|
T Consensus 161 ---------------~--~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 161 ---------------S--R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp ---------------S--E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred ---------------C--c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 1 1 445544 4788888876 32 12223333456789999974 457777665 566778
Q ss_pred ecCC
Q 043572 250 CVTG 253 (997)
Q Consensus 250 l~~g 253 (997)
++.+
T Consensus 223 ~~~~ 226 (342)
T 1yfq_A 223 FDDQ 226 (342)
T ss_dssp CCTT
T ss_pred EcCC
Confidence 7665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.66 Score=49.58 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=51.7
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|+.. .++.|+.|+.||.+..|....... ...+ + -...+|..|..-|+...++.+-.|
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-------------~~~~-~---~h~~~v~~~~~~~~~~~l~sgs~D 118 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDF-E---AHPDYIRSIAVHPTKPYVLSGSDD 118 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------------EEEE-E---CCSSCEEEEEECSSSSEEEEEETT
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE-------------EEEE-e---CCCCcEEEEEEcCCCCEEEEECCC
Confidence 45666554 467899999999999998765331 1111 1 156789999999998866666668
Q ss_pred CeEEEeecCc
Q 043572 110 QCLFLTDSLL 119 (997)
Q Consensus 110 ~~l~~~~l~~ 119 (997)
++|++|++..
T Consensus 119 ~~v~lWd~~~ 128 (304)
T 2ynn_A 119 LTVKLWNWEN 128 (304)
T ss_dssp SCEEEEEGGG
T ss_pred CeEEEEECCC
Confidence 9999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.19 E-value=1.2 Score=48.74 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=96.7
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|.|++. .++.|+.|+.+|.+..|.+....... .......+. ....+|..+...|+...++.+-.|+
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--------~~~~~~~~~---~h~~~v~~~~~~~~~~~l~t~s~D~ 176 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--------MAAKKKSVA---MHTNYLSACSFTNSDMQILTASGDG 176 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC--------SGGGCEEEE---ECSSCEEEEEECSSSSEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc--------ccccceeee---ccCCcEEEEEEeCCCCEEEEEeCCC
Confidence 4555553 36789999999999999886543210 000111111 2566899999999888777766789
Q ss_pred eEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
++.+|++..-+++..+. -...+..++..+..
T Consensus 177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------------------------------------------ 208 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSE------------------------------------------------ 208 (354)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECCCS------------------------------------------------
T ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC------------------------------------------------
Confidence 99999987655433221 11223333322100
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeec
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~ 260 (997)
++ ..++.+ ..+.|.+|....+.. .+.+. ....+.+++|. ++.++.|.. ....++|+.++.....+.
T Consensus 209 --~g-~~l~sgs~Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 209 --TG-NTFVSGGCDKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp --SC-CEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred --CC-CEEEEEeCCCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 11 123333 445678887765532 22332 24567899997 456777754 568899988765544444
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=1.2 Score=48.28 Aligned_cols=133 Identities=6% Similarity=-0.035 Sum_probs=72.2
Q ss_pred EECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcce-eeecCCCCCCCCceEEcCC
Q 043572 200 IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSG-VIFTLPDVSCPPMLKLLSK 275 (997)
Q Consensus 200 a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~-~l~~~~~~~~~p~i~~~~~ 275 (997)
.....|.+|.+..+.............+.+++|.. ..++.|. .....++|+.++... ..+..+ ....-....+.+
T Consensus 146 s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~ 224 (343)
T 3lrv_A 146 DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVD-EEAKIKEVKFAD 224 (343)
T ss_dssp ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCC-TTSCEEEEEECT
T ss_pred eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEecc-CCCCEEEEEEeC
Confidence 34557889888766543333333344688999984 3466664 457899999988655 334431 111112233333
Q ss_pred CCeEE-EEeCCeEEEEccC-CCcccc--ccccCCCCC---eEEEe--CcEEEEEE--CCeEEEEecCCC
Q 043572 276 EQKVL-LLVDNVGVFVDAH-GQPVGG--SLVFRKSPD---AVGEL--SMYVVVLR--GGKMELYHKKSG 333 (997)
Q Consensus 276 ~~e~L-l~~~~~g~fv~~~-G~~~r~--~i~w~~~P~---~i~~~--~PYll~~~--~~~ieI~~~~~~ 333 (997)
++.+| .+.++...+.|.. +...+. ++.-...+. .+++. ..|+++.. ++.+.|+++.++
T Consensus 225 ~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 225 NGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 44554 4466666666653 333221 111111232 25554 45888754 788999998654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.12 E-value=1.7 Score=50.67 Aligned_cols=230 Identities=13% Similarity=0.047 Sum_probs=126.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.+++.. ++.|+.|+.+|.+..+...... ...+ . -...+|..+...|+...+++.-.|
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------------~~~~-~---~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------------LQTL-T---GHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------------EEEE-C---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------------eEEE-e---CCCCCEEEEEECCCCCEEEEEeCC
Confidence 467777754 5679999999999988764321 0111 1 145689999999988866665568
Q ss_pred CeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++.+|+... +.+..+. ....++.++..+
T Consensus 366 g~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~------------------------------------------------- 395 (577)
T 2ymu_A 366 KTVKLWNRNG-QLLQTLTGHSSSVRGVAFSP------------------------------------------------- 395 (577)
T ss_dssp SEEEEEETTC-CEEEEEECCSSCEEEEEECT-------------------------------------------------
T ss_pred CEEEEEcCCC-CEEEEecCCCCCeEEEEECC-------------------------------------------------
Confidence 8999998532 1111111 112233333221
Q ss_pred cccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCCC
Q 043572 189 QHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++.. +.|.+|.........+.. ....+.++.|.. ..|+.|.. ....+.|+.......+....
T Consensus 396 ---dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~-- 467 (577)
T 2ymu_A 396 ---DG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS-- 467 (577)
T ss_dssp ---TS-SCEEEEETTSEEEEECTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCS--
T ss_pred ---CC-CEEEEEeCCCEEEEEeCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCC--
Confidence 11 12444444 457777644332222221 245678888874 35766655 45777886432222222221
Q ss_pred CCCCceEEcCCCCeEEEE-e-CCeEEEEccCCCcccccccc-CCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEE
Q 043572 265 SCPPMLKLLSKEQKVLLL-V-DNVGVFVDAHGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQA 338 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~-~-~~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~ 338 (997)
.......+..++.+|++ . |....+.|.+|+..+ ++.- ......+++. ..||++.. ++.|.|.+. +++.+++
T Consensus 468 -~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 468 -SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp -SCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEE-EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred -CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEE-EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 11222334444466654 3 445666677776543 2211 1223344443 34777665 568999995 6788888
Q ss_pred Ee
Q 043572 339 VT 340 (997)
Q Consensus 339 i~ 340 (997)
+.
T Consensus 545 ~~ 546 (577)
T 2ymu_A 545 LT 546 (577)
T ss_dssp EE
T ss_pred Ec
Confidence 75
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=1.2 Score=47.92 Aligned_cols=143 Identities=6% Similarity=-0.035 Sum_probs=81.5
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCC----------cceEEEEe--CCEEEEEE---CCcEEEEEecCCcceeee
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMD----------GVKTMVWL--NDSIIVGT---VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~----------~~~~l~~~--~~~l~vg~---~~~y~lidl~~g~~~~l~ 259 (997)
++|+.. ..|.+|....++. .+.+..++ .+..+.|. ++.++++. .....++|+.+++....+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 455544 4566665544432 33343422 26778886 45688876 346899999888877777
Q ss_pred cCCCCCCCCceEEcC-CCCeEEEEe-CCeEEEEccC-CCcccccccc-----CCCCCeEEEe--CcEEEEEE--CCeEEE
Q 043572 260 TLPDVSCPPMLKLLS-KEQKVLLLV-DNVGVFVDAH-GQPVGGSLVF-----RKSPDAVGEL--SMYVVVLR--GGKMEL 327 (997)
Q Consensus 260 ~~~~~~~~p~i~~~~-~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w-----~~~P~~i~~~--~PYll~~~--~~~ieI 327 (997)
+.... .|.-..+. +++.+.++. ++....+|.. |...+ .+.. ...|..+++. ..++++.. .+.|.+
T Consensus 181 ~~~~~--~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 181 QNTGK--MSTGLALDSEGKRLYTTNADGELITIDTADNKILS-RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp CCCCT--TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE-EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred cCCCC--ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE-EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 63221 23323333 333344442 3445556653 33322 2222 2234456665 45676654 378999
Q ss_pred EecCCCceEEEEecCCC
Q 043572 328 YHKKSGICVQAVTFGGE 344 (997)
Q Consensus 328 ~~~~~~~lvQ~i~~~~~ 344 (997)
+++.++..++.++....
T Consensus 258 ~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES 274 (353)
T ss_dssp EETTTCCEEEEEECSSC
T ss_pred EECCCCcEEEEEEcCCC
Confidence 99999999999987653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.73 Score=51.32 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=90.1
Q ss_pred eeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|+|++.. ++.|+.|+.||.+..|.+.... ....++ -...+|..+...|+.+.++.+-.|+
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~d~ 187 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--------------IVMILQ---GHEQDIYSLDYFPSGDKLVSGSGDR 187 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------------EEEEEC---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------EEEEEc---cCCCCEEEEEEcCCCCEEEEecCCC
Confidence 37888764 6689999999999999876432 111111 1566899999999988777656689
Q ss_pred eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 111 CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
++++|++..-+....+....++..++..+.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------------------- 217 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPG-------------------------------------------------- 217 (393)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECST--------------------------------------------------
T ss_pred cEEEEECCCCeeEEEEEcCCCcEEEEEECC--------------------------------------------------
Confidence 999999876443222222233444443220
Q ss_pred cCCceEEEEEE-CceEEEEEEeCCeEEE-EEe-----EecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCc
Q 043572 191 CRGDNVFAVII-GKRLVLIELVNGSFVI-LKE-----IQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 191 ~~~~~~l~Va~-kkki~i~~~~~~~~~~-~ke-----i~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~ 254 (997)
++ ..++++. ...|.+|....+.... +.. ....+.+.+++|.. ..|+.|.. ....+.|+.++.
T Consensus 218 -~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 218 -DG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp -TC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred -CC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 11 2244443 4557787765543221 110 11234678899874 45777754 568888987543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.01 E-value=1.8 Score=48.50 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=121.7
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.-+++++.. ++.|.+|. +|.++.+....... .+..... -....|..+...|+.+.++++-.||
T Consensus 106 ~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~-----------~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 106 YYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDI-----------LQLLQME----QPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp TTCBCEEECTTSEEEEEE-TTEEEEEETTTCCE-----------EEEEECC----STTCCEEEEEECTTSSEEEEEETTS
T ss_pred ccceeEEECCCCEEEEEe-CCEEEEEECCCCCE-----------EEEEEec----CCCCcEEEEEECCCCCEEEEEECCC
Confidence 345667753 45577886 88999998764321 1111111 1345799999999999777777799
Q ss_pred eEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 111 CLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+|.+|++..-+++..... ...+..++.+
T Consensus 170 ~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--------------------------------------------------- 198 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--------------------------------------------------- 198 (420)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE---------------------------------------------------
T ss_pred eEEEEEcCCCcEEEEEeCCCCceEEEeeC---------------------------------------------------
Confidence 999999876544322111 1112222221
Q ss_pred ccCCceEEEEEECc-eEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEEEEE-CCcEEEEEecCCccee--eecCC
Q 043572 190 HCRGDNVFAVIIGK-RLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSIIVGT-VNGYSLFSCVTGQSGV--IFTLP 262 (997)
Q Consensus 190 ~~~~~~~l~Va~kk-ki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~vg~-~~~y~lidl~~g~~~~--l~~~~ 262 (997)
+ ..++.+... .+.++...... .....+. ....+..+.|. +..++.|. .+...+.|..++.... +....
T Consensus 199 ---~-~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~ 273 (420)
T 4gga_A 199 ---S-YILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273 (420)
T ss_dssp ---T-TEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC
T ss_pred ---C-CEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec
Confidence 1 123333332 34444433221 1122222 23455666666 34566654 4567888887765321 11111
Q ss_pred CCCCCC--ceEEcCCCCeEEE-Ee---CCeEEEEccC-CCccccccccCCCCCeEEEe--CcEEEEEE---CCeEEEEec
Q 043572 263 DVSCPP--MLKLLSKEQKVLL-LV---DNVGVFVDAH-GQPVGGSLVFRKSPDAVGEL--SMYVVVLR---GGKMELYHK 330 (997)
Q Consensus 263 ~~~~~p--~i~~~~~~~e~Ll-~~---~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~--~PYll~~~---~~~ieI~~~ 330 (997)
.. ..+ .+...+.+..++. +. |....+.|.. |.... .+.-...+..+.+. ..++++.+ ++.|.|+++
T Consensus 274 ~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~-~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 274 QH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp CC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred cc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce-eeccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 11 111 1222233333433 32 4455566653 33321 23323333444443 34666543 578999999
Q ss_pred CCCceEEEEe
Q 043572 331 KSGICVQAVT 340 (997)
Q Consensus 331 ~~~~lvQ~i~ 340 (997)
.++..++++.
T Consensus 352 ~~~~~v~~l~ 361 (420)
T 4gga_A 352 PTMAKVAELK 361 (420)
T ss_dssp TTCCEEEEEC
T ss_pred CCCcEEEEEc
Confidence 9999999885
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=1.4 Score=47.54 Aligned_cols=156 Identities=8% Similarity=0.034 Sum_probs=94.0
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. +..++-|+.||.+..|.+..... ...+. .....|..+..-|+.+.++++-.|
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~--------------~~~~~---~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ--------------IKSID---AGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------------EEEEE---CCTTCCCCEEECTTSSEEEEECTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE--------------EEEEe---CCCccEEEEEECCCCCEEEEEcCC
Confidence 467777754 45788999999999998764321 11111 145578888888988877775668
Q ss_pred CeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+.+.+|++..-.+...+. ....+..++..+
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp------------------------------------------------- 174 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSP------------------------------------------------- 174 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSSCEEEEEECT-------------------------------------------------
T ss_pred CcEEEEEcCCCceeEEecCCCceEEEEEECC-------------------------------------------------
Confidence 899999987644322111 111233333221
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeee
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
++ ..++++. ...|.+|....++. ++.+.- ...+.+++|.. ..|+.|.. ....+.|+.++.....+
T Consensus 175 ---dg-~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 175 ---DG-KYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp ---TS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ---CC-CEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 12 1244443 45577887765532 233332 34678999984 45666654 46888999877654443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=2.3 Score=47.19 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=129.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccc-cCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVS-VADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|+|++.. |+.|..|+ ++.+..|.+.....-...............+..... -+...|..+..-|+...++.+-.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 467888754 56777776 567888877543210000000000000000000000 02235889998898886666566
Q ss_pred CCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 109 DQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
|++|++|++..-+.+..+. -...|..++..+
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p------------------------------------------------ 175 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFP------------------------------------------------ 175 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcC------------------------------------------------
Confidence 8999999987644332211 112233333321
Q ss_pred ccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC---CEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 188 EQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN---DSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 188 ~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~---~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++. .++.+ ..+.|.+|.+..+.. ...+...+.+.++.|.. ..++.|.. ....++|+.++.....+...
T Consensus 176 ----~~~-~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~ 248 (393)
T 1erj_A 176 ----SGD-KLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248 (393)
T ss_dssp ----TSS-EEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred ----CCC-EEEEecCCCcEEEEECCCCee--EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence 111 23333 345678887765533 23344567788888873 45777754 56889999888655444321
Q ss_pred C---CCCCCce--EEcCCCCeEEEE-e-CCeEEEEccCC-Ccc-------cc--ccccCCC---CCeEEEe--CcEEEEE
Q 043572 263 D---VSCPPML--KLLSKEQKVLLL-V-DNVGVFVDAHG-QPV-------GG--SLVFRKS---PDAVGEL--SMYVVVL 320 (997)
Q Consensus 263 ~---~~~~p~i--~~~~~~~e~Ll~-~-~~~g~fv~~~G-~~~-------r~--~i~w~~~---P~~i~~~--~PYll~~ 320 (997)
. .+....+ ..+..++.+|++ . |+...+.|... ... .+ ...+... ...+++. ..||+..
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 328 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence 1 1111122 233334455554 3 45555555432 110 01 1223222 2233332 3577766
Q ss_pred E-CCeEEEEecCCCceEEEEec
Q 043572 321 R-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 321 ~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
. ++.|.|.++.++..++++.-
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC
T ss_pred eCCCeEEEEECCCCeEEEEECC
Confidence 5 57899999999998888753
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.68 Score=49.87 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=95.2
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC------cE
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG------KV 103 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~------~l 103 (997)
..|.|++.. ++.|+.|+.||.+..|.+.... ...+.. ....|..+...|... .+
T Consensus 108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--------------~~~~~~----h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--------------LATLLG----HNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--------------EEEECC----CSSCEEEEEECCC------CCEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEec----cCCcEEEEEEccCCCCCCCccEE
Confidence 467887754 5579999999999999875321 111111 456788888887533 35
Q ss_pred EEEecCCeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 104 LLLFCDQCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 104 Lv~l~d~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+.+-.|+++.+|++......... .-...+..++..+
T Consensus 170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp------------------------------------------- 206 (319)
T 3frx_A 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP------------------------------------------- 206 (319)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-------------------------------------------
T ss_pred EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-------------------------------------------
Confidence 55456889999999775543221 1122344444322
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEECCcEEEEEecCCcce
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGTVNGYSLFSCVTGQSG 256 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~~~~y~lidl~~g~~~ 256 (997)
++ ..++.+. ...|.+|....+ +.++.+...+.+.+++|..+ .+..|...+..+++++++...
T Consensus 207 ---------~g-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 207 ---------DG-TLIASAGKDGEIMLWNLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271 (319)
T ss_dssp ---------TS-SEEEEEETTCEEEEEETTTT--EEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEE
T ss_pred ---------CC-CEEEEEeCCCeEEEEECCCC--cEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeee
Confidence 11 2344444 456888877654 33445556778899999853 477888889999998765443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.36 Score=55.00 Aligned_cols=74 Identities=12% Similarity=-0.045 Sum_probs=50.9
Q ss_pred eeeeEEeecC-----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDCQ-----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~~-----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..|+|++... +.|+.|+.+|.+..|.+..... ...+.. -...+|..+... +.+.++.+
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-------------~~~~~~---~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-------------VDKWLF---GHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC-------------EEEECC---CCSSCEEEEEEC-STTEEEEE
T ss_pred CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce-------------eeeeec---CCCCceEEEEEC-CCCEEEEE
Confidence 5788887653 3799999999999999864321 011111 145689999888 66655554
Q ss_pred ecCCeEEEeecCcccc
Q 043572 107 FCDQCLFLTDSLLTQP 122 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~ 122 (997)
-.|++|++|++...++
T Consensus 259 ~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKN 274 (450)
T ss_dssp ESSSEEEEEETTTCCE
T ss_pred eCCCeEEEEECCCCcE
Confidence 4578999999876543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.62 Score=50.23 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=37.1
Q ss_pred ceEEEEEEeCCe-EEEEEeEecCCcceEEEEeC-CEEEEEECCcEEEEEecCCcceeeecCC
Q 043572 203 KRLVLIELVNGS-FVILKEIQCMDGVKTMVWLN-DSIIVGTVNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 203 kki~i~~~~~~~-~~~~kei~~~~~~~~l~~~~-~~l~vg~~~~y~lidl~~g~~~~l~~~~ 262 (997)
..|.+|....++ ....+.+..+..+.+++|.. +.++++ .....++|+.+|+....++..
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~-~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEECST
T ss_pred CeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEc-cCcEEEEeCCCCceecccccc
Confidence 567777765432 22233444566778888873 346664 556888999888776665543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=2.1 Score=45.94 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred eeeeEEeecC--CeE-EEEcC---CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc---cCc
Q 043572 32 LSISPISDCQ--VLI-YIGTQ---SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD---VGK 102 (997)
Q Consensus 32 ~~I~ci~~~~--~~l-~iGT~---~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~---~~~ 102 (997)
..|.|++... ..+ ..|+. +|.+..|.+..... ....... ...+|..+...|. .+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------~~~~~~~----~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------KLLREIE----KAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------------EEEEEEE----ESSCEEEEECTTCCTTTCC
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------------cceeeec----ccCcEEEEEEcCCCCCCce
Confidence 4788888653 344 46666 99999999875431 0111111 4668999999998 465
Q ss_pred EEEEecCCeEEEeecCccc-ccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccC
Q 043572 103 VLLLFCDQCLFLTDSLLTQ-PLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKAN 180 (997)
Q Consensus 103 lLv~l~d~~l~~~~l~~l~-~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 180 (997)
++++-.||.|.+|++..-. ++..+.. ...+..++..+.- . .+.
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~--------~s~---------------- 127 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL-----------G--------IGE---------------- 127 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-----------G--------CC-----------------
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-----------c--------cCC----------------
Confidence 6665558899999997654 3332221 1223333221100 0 000
Q ss_pred CccchhcccccCCceEEEEEEC-ceEEEEEEeCCe--EEEEEeEec--CCcceEEEE------eCCEEEEEEC-CcEEEE
Q 043572 181 GVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGS--FVILKEIQC--MDGVKTMVW------LNDSIIVGTV-NGYSLF 248 (997)
Q Consensus 181 g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~--~~~~kei~~--~~~~~~l~~------~~~~l~vg~~-~~y~li 248 (997)
++ ..++.+.. ..|.+|....+. ...++...- ...+.++.| .+..++.|.. ....++
T Consensus 128 -----------~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 128 -----------GA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp -----------CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred -----------Cc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 12 23444444 467888776542 222221111 225677774 2456777866 578899
Q ss_pred EecCCcceeeecCCCCCCCCceEEcC----CCCeEEEEe-CCeEEEEccC-CCccccccc---c---CCCCCeEEEeC--
Q 043572 249 SCVTGQSGVIFTLPDVSCPPMLKLLS----KEQKVLLLV-DNVGVFVDAH-GQPVGGSLV---F---RKSPDAVGELS-- 314 (997)
Q Consensus 249 dl~~g~~~~l~~~~~~~~~p~i~~~~----~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~---w---~~~P~~i~~~~-- 314 (997)
|+.++.......... ......+. +++.++.+. ++...+.|.. |.+.. .+. + ......+.+..
T Consensus 196 d~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 196 DLRNMALRWETNIKN---GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK-GFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp ETTTTEEEEEEECSS---CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT-EEEEEEEECCSSCEEEEEEETTE
T ss_pred ECccCceeeecCCCC---ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc-ceeeeccCCCcCCEEEEEECCCC
Confidence 998876544333321 11122232 333444444 4455555543 33322 111 1 22233455543
Q ss_pred c-EEEEEE-CCeEEEEecCCC
Q 043572 315 M-YVVVLR-GGKMELYHKKSG 333 (997)
Q Consensus 315 P-Yll~~~-~~~ieI~~~~~~ 333 (997)
+ ++++.. ++.|.|+++.++
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECC
T ss_pred CcEEEEEeCCCcEEEeecCCC
Confidence 3 455444 578999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=2.3 Score=44.83 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=49.7
Q ss_pred eeeEEeecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 33 SISPISDCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 33 ~I~ci~~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
-.+|++... +.|.+|. ||.+..|....... .+..... -....|..+...|+.+.++.+-.||+
T Consensus 27 y~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~-----------~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 27 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDI-----------LQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCE-----------EEEEECC----STTCCEEEEEECTTSSEEEEEETTSE
T ss_pred cceEEEECCCCEEEEEe-CCEEEEEECCCCCE-----------EEEEEec----CCCCeEEEEEECCCCCEEEEEECCCc
Confidence 357777544 4566665 89999998764321 1111111 14557999999999997777677899
Q ss_pred EEEeecCcccc
Q 043572 112 LFLTDSLLTQP 122 (997)
Q Consensus 112 l~~~~l~~l~~ 122 (997)
|.+|++..-++
T Consensus 91 v~iw~~~~~~~ 101 (318)
T 4ggc_A 91 VQLWDVQQQKR 101 (318)
T ss_dssp EEEEETTTTEE
T ss_pred EEEeecCCcee
Confidence 99999876544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=1.8 Score=46.72 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=52.8
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|.|++..++.|+.|+.||.+..|.+..... .....+.. .-...+|..+..-|+.+.++.+-.|+
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~------------~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF------------TLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCC------------EEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCe------------EEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCC
Confidence 357888888788999999999999998864321 00111100 01456899999999888666655689
Q ss_pred eEEEeecCc
Q 043572 111 CLFLTDSLL 119 (997)
Q Consensus 111 ~l~~~~l~~ 119 (997)
+|.+|++..
T Consensus 81 ~v~iw~~~~ 89 (330)
T 2hes_X 81 TVSIWAKEE 89 (330)
T ss_dssp CEEEEEC--
T ss_pred cEEEEEccc
Confidence 999999853
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=95.69 E-value=3 Score=45.09 Aligned_cols=234 Identities=12% Similarity=-0.001 Sum_probs=130.8
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. ++.|+.|+.||.+..|....... ...+. ....+|..+..-|+.+.++.+-.|
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--------------~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--------------VHAIP---LRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--------------EEEEE---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--------------ceEee---cCCccEEEEEECCCCCEEEEEeCC
Confidence 578888854 55899999999999998764321 11111 255689999999988866666668
Q ss_pred CeEEEeecCccccccc-cccccc----eEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 110 QCLFLTDSLLTQPLKK-LGFLKG----ISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~-~~~~kg----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
+.+.+|++..-+.... .....| ++..+..
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------------------------------- 152 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---------------------------------------------- 152 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE----------------------------------------------
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEEC----------------------------------------------
Confidence 9999999865321100 000111 1111100
Q ss_pred hhcccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEEE-CCcEEEEEecCCcceeee
Q 043572 185 KEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVGT-VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg~-~~~y~lidl~~g~~~~l~ 259 (997)
.++ .++.+ ..+.|.+|....+... ..+. ..+.+.+++|..+ .++.|. .....+.|+.++.....+
T Consensus 153 ------~~~--~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~ 222 (340)
T 1got_B 153 ------DDN--QIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222 (340)
T ss_dssp ------ETT--EEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred ------CCC--cEEEEECCCcEEEEECCCCcEE--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Confidence 011 13333 3455778777655322 2332 2356789999853 466664 467889999887655444
Q ss_pred cCCCCCCCCceEEc-CCCCeEEEEe-CCeEEEEccC-CCccccccccCCC---CCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 260 TLPDVSCPPMLKLL-SKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVFRKS---PDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 260 ~~~~~~~~p~i~~~-~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w~~~---P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
.... .......+ +++..++.+. |+...+.|.. |.... ++..... ...+.+. ..++++-. ++.|.|.++
T Consensus 223 ~~h~--~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 223 TGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCc--CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 3211 11112233 3333444443 4556666653 22211 1222221 2233443 34776655 578999999
Q ss_pred CCCceEEEEec
Q 043572 331 KSGICVQAVTF 341 (997)
Q Consensus 331 ~~~~lvQ~i~~ 341 (997)
.++..++++.-
T Consensus 300 ~~~~~~~~~~~ 310 (340)
T 1got_B 300 LKADRAGVLAG 310 (340)
T ss_dssp TTCCEEEEEEC
T ss_pred ccCcEeeEeec
Confidence 99988888753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.5 Score=58.02 Aligned_cols=169 Identities=10% Similarity=0.085 Sum_probs=100.8
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|+|++.. ++.|+.|+.||.+..|.+..... ....... ....+|..+...|. .+.++
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------------~~~~~~~---~h~~~V~~v~~sp~~~~~~l~ 117 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPLLL 117 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE------------EEEEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc------------ccccccc---CCCCCeEEEEECCCCCCCEEE
Confidence 3578998864 67899999999999999875421 0111111 25668999999998 77666
Q ss_pred EEecCCeEEEeecCccccccc---cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLKK---LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~~---~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.||+|++|++..-..... .....+++.++..+....+.. . ..+
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~------------------~-------------~~~ 166 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG------------------E-------------HNG 166 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc------------------c-------------ccc
Confidence 666688999999876432211 122234566665432100000 0 000
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCC--eEEEEEeEec-CCcceEEEEeCC-----EEEEEE-CCcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNG--SFVILKEIQC-MDGVKTMVWLND-----SIIVGT-VNGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~--~~~~~kei~~-~~~~~~l~~~~~-----~l~vg~-~~~y~lidl~ 251 (997)
.+ ++ ..++++. ...|.+|....+ .+.....+.. ...+.+++|..+ .++.|. .+...++|+.
T Consensus 167 ~~--------d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 167 TK--------ES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp CG--------GG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred CC--------CC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 00 11 2344444 456889888755 2344444432 456899999844 466665 4568899998
Q ss_pred CCc
Q 043572 252 TGQ 254 (997)
Q Consensus 252 ~g~ 254 (997)
++.
T Consensus 238 ~~~ 240 (753)
T 3jro_A 238 NEQ 240 (753)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.13 Score=54.90 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=41.9
Q ss_pred CcEEEcCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccC
Q 043572 933 RHVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 933 ~~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~ 990 (997)
....+.+.-.|++|...+...+ +.||||.|...|.... ....|| |+..+....++|
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv--~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPC--ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEE--ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cCCCCCcccCCcCcCCHhcCCe--ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 4445667889999998887643 5899999999998754 223499 999987665544
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.007 Score=47.05 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCcCccccCccCC--ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+..|++|...+.. ...++.||||+||..|+... ....||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 50 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCC
Confidence 45789999999855 46888999999999999865 235688543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=95.46 E-value=0.58 Score=52.89 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=90.4
Q ss_pred eeeeEEeec--CC-eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 32 LSISPISDC--QV-LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~--~~-~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
..|.|++.. +. .|+.|+.+|.+..|.+........ ......... -...+|..|...|..+.+++ +.
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-------VIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-------EEECSEEEC---CCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------eeccceeec---CCCCCEeeeEEeCCCCCEEEEEe
Confidence 467888864 33 799999999999999876432100 000011111 14568999999995554554 34
Q ss_pred cCCeEEEeecCccc---ccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 108 CDQCLFLTDSLLTQ---PLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 108 ~d~~l~~~~l~~l~---~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
.|+.|++|++..-. ++..+ ....+++.++.++
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-------------------------------------------- 287 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-------------------------------------------- 287 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS--------------------------------------------
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC--------------------------------------------
Confidence 58899999997642 22222 1122344444332
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--C-EEEEEE-CCcEEEEEecC
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--D-SIIVGT-VNGYSLFSCVT 252 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~-~l~vg~-~~~y~lidl~~ 252 (997)
++...++++. .+.|.+|.+.... ..+..+. ....+.++.|.. . .++.|. .+...++|+.+
T Consensus 288 --------~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 288 --------YSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --------SCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred --------CCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 1112344443 4567888776421 1122222 345789999984 2 255554 45788899875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=4.2 Score=44.29 Aligned_cols=198 Identities=10% Similarity=0.021 Sum_probs=108.4
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccc-----cccceEEEEeecccCCcccccccccccccccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANA 161 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (997)
...+|..+...|+ ++++++-.||+|++|++..-+...... -...|+.++..+
T Consensus 81 ~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp---------------------- 137 (344)
T 4gqb_B 81 TEAGVADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS---------------------- 137 (344)
T ss_dssp ESSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT----------------------
T ss_pred cCCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC----------------------
Confidence 4568999998887 457777789999999987643322111 011233333221
Q ss_pred CCcccchhhhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CE-
Q 043572 162 STSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DS- 236 (997)
Q Consensus 162 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~- 236 (997)
++ ..++.+.. +.|.+|.+..+.. ++.+. -.+.|.++.|.. ..
T Consensus 138 ------------------------------dg-~~l~sgs~d~~i~iwd~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 138 ------------------------------SG-TQAVSGSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp ------------------------------TS-SEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSSCTTE
T ss_pred ------------------------------CC-CEEEEEeCCCeEEEEECCCCcE--EEEEcCcCCceEEEEecCCCCCc
Confidence 11 23444444 4588887766532 23332 245678898874 23
Q ss_pred EEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEc-CCCCeEEEE-e-CCeEEEEcc-CCCccccccccCCC-CCeE
Q 043572 237 IIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL-SKEQKVLLL-V-DNVGVFVDA-HGQPVGGSLVFRKS-PDAV 310 (997)
Q Consensus 237 l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~-~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~i~w~~~-P~~i 310 (997)
++-|. .+...+.|+.+++....+.....+.......+ +.++.++++ . |+...+.|. .|++.+ ++.-... ...+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-~~~~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-SSAVHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-EEECCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-EEcCCCCCEEEE
Confidence 44444 46788999988865554433322222222233 334456554 3 455666675 344432 2222222 3355
Q ss_pred EEe---CcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 311 GEL---SMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 311 ~~~---~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
++. ..||+... ++.|.|.++.++++++....
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H 298 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH 298 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC
Confidence 554 24566554 57899999999887765433
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=95.29 E-value=1.1 Score=50.44 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=53.0
Q ss_pred eeeeEEeecC---CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC-cEEEEe
Q 043572 32 LSISPISDCQ---VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG-KVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~~---~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~-~lLv~l 107 (997)
..|+|++... +.|+.|+.+|.+..|.+........ .. ........+. -...+|..|...|... .++.+-
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~--~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PS--GECQPDLRLR---GHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TT--CCCCCSEEEE---CCSSCCCCEEECTTSTTEEEEEC
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--cc--ccCCCcEEec---CCCCCeEEEEeCCCCCCeEEEEe
Confidence 4788888764 3689999999999999975321100 00 0001111111 2566899999999877 566655
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.||+|++|++..
T Consensus 202 ~dg~i~vwd~~~ 213 (430)
T 2xyi_A 202 DDHTICLWDINA 213 (430)
T ss_dssp TTSCEEEEETTS
T ss_pred CCCeEEEEeCCC
Confidence 689999999876
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0087 Score=46.51 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=34.1
Q ss_pred EcCCCcCccccCccCC-ccEEEcC-CCeEEEecccccc--CcccCCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYP-DDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p-~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++++..|++|...+.. ....+.| |||+||..|+... ....||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr 50 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCC
Confidence 4677899999999865 3355666 9999999999864 245688554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.76 Score=57.70 Aligned_cols=157 Identities=10% Similarity=0.101 Sum_probs=94.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|..|+.||.+..|...... .....+ .+.+|..+...| ...++.+-.|
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~--------------~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D 78 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE--------------VVIKLE----DRSAIKEMRFVK-GIYLVVINAK 78 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCE--------------EEEECS----SCCCEEEEEEET-TTEEEEEETT
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE--------------EEEEcC----CCCCEEEEEEcC-CCEEEEEECc
Confidence 568888864 5689999999999988654321 111111 456899999998 4434443457
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
++|++|++..-+.+........|+.++.++
T Consensus 79 ~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp-------------------------------------------------- 108 (902)
T 2oaj_A 79 DTVYVLSLYSQKVLTTVFVPGKITSIDTDA-------------------------------------------------- 108 (902)
T ss_dssp CEEEEEETTTCSEEEEEECSSCEEEEECCT--------------------------------------------------
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEECC--------------------------------------------------
Confidence 899999987644332222112244444322
Q ss_pred ccCCceEEEEEEC-ceEEEEEEeCCeEEEEEe---------E-ecCCcceEEEEeC---CEEEEEECCcEEEEEecCCcc
Q 043572 190 HCRGDNVFAVIIG-KRLVLIELVNGSFVILKE---------I-QCMDGVKTMVWLN---DSIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 190 ~~~~~~~l~Va~k-kki~i~~~~~~~~~~~ke---------i-~~~~~~~~l~~~~---~~l~vg~~~~y~lidl~~g~~ 255 (997)
++ ..++++.. ..|.+|.+..+.....+- . ...+.|.+++|.. +.+.+|...+-.+.|+.++..
T Consensus 109 --~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~ 185 (902)
T 2oaj_A 109 --SL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEI 185 (902)
T ss_dssp --TC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEE
T ss_pred --CC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCce
Confidence 11 23455544 457788776654321110 0 0135689999985 358888777666999988765
Q ss_pred eeeec
Q 043572 256 GVIFT 260 (997)
Q Consensus 256 ~~l~~ 260 (997)
...+.
T Consensus 186 ~~~~~ 190 (902)
T 2oaj_A 186 KQSFI 190 (902)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 54443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.11 E-value=4.8 Score=43.85 Aligned_cols=243 Identities=9% Similarity=-0.002 Sum_probs=129.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|.|++.. ++.|+-|+.||.+..|....... ..... .....|..+..-|+...++..-.|
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--------------~~~~~---~~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--------------EHAVT---MPCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------EEEEE---CSSSCCCEEEECTTSSEEEEESTT
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--------------ceEEe---cCCCCEEEEEECCCCCEEEEeeCC
Confidence 579999864 56899999999999998654321 00011 245578999999998866665568
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+++.+|++..-..... ......+..+. . . +. .+. +
T Consensus 128 ~~i~v~~~~~~~~~~~---~~~~~~~~~h~---~---------~-v~------------------------~~~----~- 162 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENM---AAKKKSVAMHT---N---------Y-LS------------------------ACS----F- 162 (354)
T ss_dssp SEEEEEECCCCTTCCS---GGGCEEEEECS---S---------C-EE------------------------EEE----E-
T ss_pred CCEEEEEEeccccccc---cccceeeeccC---C---------c-EE------------------------EEE----E-
Confidence 8999998854211100 01111111110 0 0 00 000 0
Q ss_pred ccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEec-CCcceEEEEe----CCEEEEEE-CCcEEEEEecCCcceeeecCC
Q 043572 190 HCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQC-MDGVKTMVWL----NDSIIVGT-VNGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 190 ~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~----~~~l~vg~-~~~y~lidl~~g~~~~l~~~~ 262 (997)
..++ ..++.+ ..+.|.+|....+.. ++.+.- ...+.++.|. ++.++.|. .....+.|+.++.....+...
T Consensus 163 ~~~~-~~l~t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h 239 (354)
T 2pbi_B 163 TNSD-MQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239 (354)
T ss_dssp CSSS-SEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred eCCC-CEEEEEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 0011 123334 445678887765532 233332 3456777774 34566665 467889999888765555322
Q ss_pred CCCCCCceEEcCCCCeEEEEe-CCeEEEEccCCCccccccccCC---CCCeEEEe--CcEEEEEE-CCeEEEEecCCCce
Q 043572 263 DVSCPPMLKLLSKEQKVLLLV-DNVGVFVDAHGQPVGGSLVFRK---SPDAVGEL--SMYVVVLR-GGKMELYHKKSGIC 335 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~i~w~~---~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~l 335 (997)
.... ..+..-+++..++.+. |....+.|.........+.-.. ....+.+. ..++++-. ++.|.|+++.++..
T Consensus 240 ~~~v-~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 240 ESDV-NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp SSCE-EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCe-EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 1110 0122223333444443 4566666653321100111111 11233333 45776655 56899999999988
Q ss_pred EEEEe
Q 043572 336 VQAVT 340 (997)
Q Consensus 336 vQ~i~ 340 (997)
++++.
T Consensus 319 ~~~l~ 323 (354)
T 2pbi_B 319 VSILF 323 (354)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.07 E-value=0.44 Score=51.22 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=92.2
Q ss_pred eeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..+++++.. +..++.|+.+|.+..|....... ...+. -...+|..|..-|+.+.++.+-
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-------------~~~~~----~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-------------KTNHI----GHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-------------EEEEC----CCSSCEEEEEECTTSSEEEEEE
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-------------eeEec----CCCCcEEEEEECCCCCEEEEEe
Confidence 456665532 22466788999999888764321 11111 1466899999999888666656
Q ss_pred cCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 108 CDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
.|+++++|++....++.....-..++.++..+
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------ 266 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDGGDIINALCFSP------------------------------------------------ 266 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEECSSCEEEEEECS------------------------------------------------
T ss_pred CCCeEEEEEeccCceeeeecCCceEEeeecCC------------------------------------------------
Confidence 68999999998766544332222333333211
Q ss_pred ccccCCceEEEEEECceEEEEEEeCCeEE-EEEe-------EecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCc
Q 043572 188 EQHCRGDNVFAVIIGKRLVLIELVNGSFV-ILKE-------IQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 188 ~~~~~~~~~l~Va~kkki~i~~~~~~~~~-~~ke-------i~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~ 254 (997)
....++.+....|.+|....+... .++. -..+..|.+++|.. ..|+.|.. ....+.|+.+|+
T Consensus 267 -----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 267 -----NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -----SSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -----CCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 113456677778888877654221 1111 11245678899974 45777755 568899999885
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=95.04 E-value=7.7 Score=45.87 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=52.1
Q ss_pred eeeeeEEeecCC---eEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 31 SLSISPISDCQV---LIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 31 ~~~I~ci~~~~~---~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
...|+|++...+ .|+.|+.||.+..|...... ....++ -....|..+..-|+...++.+-
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~l~---~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------------FKSTFG---EHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------------EEEEEC---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------------Eeeeec---cccCceEEEEECCCCCEEEEEE
Confidence 357888886543 59999999999999754321 111111 1566899999999888555555
Q ss_pred cCCeEEEeecCcccc
Q 043572 108 CDQCLFLTDSLLTQP 122 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~ 122 (997)
.|++|++|++..-++
T Consensus 210 ~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTK 224 (611)
T ss_dssp TTSCEEEEETTTCCE
T ss_pred CCCcEEEEECCCCcE
Confidence 689999999865443
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0086 Score=50.05 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=33.8
Q ss_pred CCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+...|++|...+.. ..+.+.||||+||..|+... ....||.++
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr 67 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcC
Confidence 56789999999865 34677899999999999864 245699554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=1.8 Score=46.96 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=93.9
Q ss_pred eeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 33 SISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 33 ~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
.|.+++. .++.|+.|+.||.+..|....... .....+.. -...+|..+..-|+.+.++.+-.|+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----------~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----------ICKSVLSE---GHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----------EEEEEECS---SCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----------eeeeeecc---ccCCcEEEEEECCCCCEEEEEECCC
Confidence 5666664 366899999999999998865421 00011111 1456899999999888666655689
Q ss_pred eEEEeecCccc--cccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhc
Q 043572 111 CLFLTDSLLTQ--PLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEE 187 (997)
Q Consensus 111 ~l~~~~l~~l~--~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 187 (997)
++.+|++..-. .+..+. -...|..++..+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp------------------------------------------------ 115 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAP------------------------------------------------ 115 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECT------------------------------------------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeC------------------------------------------------
Confidence 99999875421 111111 112233333322
Q ss_pred ccccCCceEEEEEE-CceEEEEEEeCC-eEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeee
Q 043572 188 EQHCRGDNVFAVII-GKRLVLIELVNG-SFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 188 ~~~~~~~~~l~Va~-kkki~i~~~~~~-~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
++ ..++.+. .+.|.+|.+..+ .......+. ....+.++.|.. ..|+.|.. ....++|+.++......
T Consensus 116 ----~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 116 ----SG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp ----TS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred ----CC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 11 1344443 456888888654 333333332 234678899984 45777754 56888998876544333
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=7.8 Score=45.21 Aligned_cols=229 Identities=11% Similarity=0.002 Sum_probs=118.2
Q ss_pred cceEEEeecccCcEEEEecCCeEEEeec--CccccccccccccceEEEEeecccCCccccccccccccccccccCCcccc
Q 043572 90 PVESIFVLDDVGKVLLLFCDQCLFLTDS--LLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQ 167 (997)
Q Consensus 90 ~I~qi~vl~~~~~lLv~l~d~~l~~~~l--~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 167 (997)
.+..+.+-|+...+.++-.|++|.+|++ .+++.+..+.--.+...+++++..
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~-------------------------- 233 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK-------------------------- 233 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST--------------------------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCc--------------------------
Confidence 3777778888887888666889999999 555543333222233333332200
Q ss_pred hhhhhccCccccCCccchhcccccCCceEEEEEE--CceEEEEEEeCCeEEEEEeEec-----------CC-cceEEEEe
Q 043572 168 RLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII--GKRLVLIELVNGSFVILKEIQC-----------MD-GVKTMVWL 233 (997)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~--kkki~i~~~~~~~~~~~kei~~-----------~~-~~~~l~~~ 233 (997)
| .++ ..++|+- ...|.++.... .+.++.+.. ++ .+.++.+.
T Consensus 234 -------------~---------~dg-~~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 234 -------------G---------YED-RYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp -------------T---------CTT-TEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred -------------C---------CCC-CEEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEEC
Confidence 0 011 1344443 56677765443 333444433 22 35666666
Q ss_pred --CCEEEEEEC--CcEEEEEecCCccee--eecCCCCCCCCceEEcCCCCeEE-EEe--CCeEEEEcc-CCCcccccccc
Q 043572 234 --NDSIIVGTV--NGYSLFSCVTGQSGV--IFTLPDVSCPPMLKLLSKEQKVL-LLV--DNVGVFVDA-HGQPVGGSLVF 303 (997)
Q Consensus 234 --~~~l~vg~~--~~y~lidl~~g~~~~--l~~~~~~~~~p~i~~~~~~~e~L-l~~--~~~g~fv~~-~G~~~r~~i~w 303 (997)
+..+++... ....++|+.++.... .++. +..|.-..++.++.++ ++. ++....+|. +|+... ++.=
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~i~~ 364 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-LVDV 364 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEEC
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-eecc
Confidence 345555543 467888887654332 2222 1223333444344544 443 345555776 454432 2221
Q ss_pred CCC--C-CeEEEeC---cEEEEE---ECCeEEEEecCC-------CceEEEEecCCCCCCCceecccccCCCcEEEEEc-
Q 043572 304 RKS--P-DAVGELS---MYVVVL---RGGKMELYHKKS-------GICVQAVTFGGEGGGQCIATDEECGAGKLLVVAT- 366 (997)
Q Consensus 304 ~~~--P-~~i~~~~---PYll~~---~~~~ieI~~~~~-------~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s- 366 (997)
... | ....+.. -.+++. .++.|.|.++.+ ...+|+++..+.. +.++-. +. +|+.+++.+
T Consensus 365 g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-~~~v~~--~p-dg~~l~v~~~ 440 (543)
T 1nir_A 365 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-SLFIKT--HP-KSSHLYVDTT 440 (543)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEEC--CT-TCCEEEECCT
T ss_pred CCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-ceEEEc--CC-CCCcEEEecC
Confidence 112 2 2233322 234433 358999999988 8899999876531 122322 21 345566665
Q ss_pred -------CCeEEEEeecC
Q 043572 367 -------PTKVICYQKVP 377 (997)
Q Consensus 367 -------~~~V~~l~~~~ 377 (997)
+..|..+....
T Consensus 441 ~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TCSSHHHHTCEEEEETTC
T ss_pred CCCCcccCceEEEEECCC
Confidence 23555555443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.42 Score=53.37 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=56.9
Q ss_pred eeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEE
Q 043572 34 ISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLF 113 (997)
Q Consensus 34 I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~ 113 (997)
|++++..++.|++| .+|.|..|.+...... .. .. ..+.+|.+|..++. + ++++..||+|+
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~-------------~~-~~---~~~~~v~~i~~~~p-~-~av~~~dG~L~ 149 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEF-------------RT-VT---SFEKPVFQLKNVNN-T-LVILNSVNDLS 149 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSSTTCE-------------EE-EE---ECSSCEEEEEECSS-E-EEEEETTSEEE
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhhhcc-------------Cc-cc---eeecceeeEEecCC-C-EEEEECCCCEE
Confidence 77777767789999 8898999988754321 01 01 13457888887765 3 66658999999
Q ss_pred EeecCccccccccccccceEEEEeec
Q 043572 114 LTDSLLTQPLKKLGFLKGISVIAKRI 139 (997)
Q Consensus 114 ~~~l~~l~~~~~~~~~kg~~~f~~~~ 139 (997)
+|++.+....+ -..+|+++|+.+
T Consensus 150 v~dl~~~~~~~---~~~~Vs~v~WSp 172 (388)
T 1xip_A 150 ALDLRTKSTKQ---LAQNVTSFDVTN 172 (388)
T ss_dssp EEETTTCCEEE---EEESEEEEEECS
T ss_pred EEEccCCcccc---ccCCceEEEEcC
Confidence 99998644321 235788888754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.80 E-value=5.4 Score=42.90 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=79.4
Q ss_pred EEEEE--CceEEEEEEe-CCeEEEEEeEecC--CcceEEEEeC--CEEEEEEC--CcEEEEEecC--CcceeeecCC--C
Q 043572 197 FAVII--GKRLVLIELV-NGSFVILKEIQCM--DGVKTMVWLN--DSIIVGTV--NGYSLFSCVT--GQSGVIFTLP--D 263 (997)
Q Consensus 197 l~Va~--kkki~i~~~~-~~~~~~~kei~~~--~~~~~l~~~~--~~l~vg~~--~~y~lidl~~--g~~~~l~~~~--~ 263 (997)
++|+. .++|.+|.+. .+.+.....+..+ ..|..++|.. ..++++.. +...+++++. |....+.... .
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 44443 4578899887 4556655544443 2578888884 45777643 4677888874 5433222111 1
Q ss_pred CC----CCCceEEcCCCCeEE-EE-e-CCeEEEEcc--CCCcccc-cccc-CCCCCeEEEe--CcEEEEEE--CCeEEEE
Q 043572 264 VS----CPPMLKLLSKEQKVL-LL-V-DNVGVFVDA--HGQPVGG-SLVF-RKSPDAVGEL--SMYVVVLR--GGKMELY 328 (997)
Q Consensus 264 ~~----~~p~i~~~~~~~e~L-l~-~-~~~g~fv~~--~G~~~r~-~i~w-~~~P~~i~~~--~PYll~~~--~~~ieI~ 328 (997)
.. ..|.-..+..++.+| ++ . ++....++. .|....- .+.- ...|..+++. .-||++.. .+.|.|+
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 11 123334454455655 33 2 344444443 3433221 2222 2458888886 33777765 3689999
Q ss_pred e--cCCCceEE---EEecCC
Q 043572 329 H--KKSGICVQ---AVTFGG 343 (997)
Q Consensus 329 ~--~~~~~lvQ---~i~~~~ 343 (997)
. ..+|.+.+ .+.++.
T Consensus 314 ~~d~~tg~l~~~~~~~~~p~ 333 (347)
T 3hfq_A 314 ARDLTSGKLSLLQKDVTVPE 333 (347)
T ss_dssp EECTTTCCEEEEEEEEECTT
T ss_pred EEeCCCCeEEecccceecCC
Confidence 4 45677653 345554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.1 Score=48.37 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=53.8
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEe--ecccCcEEEE
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFV--LDDVGKVLLL 106 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~v--l~~~~~lLv~ 106 (997)
...|+|++.. ++.|+.|+.+|.+..|.+..... .... -...+|..+.. -++.+.++.+
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------~~~~----~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA--------------IQIA----QHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------EEEE----ECSSCEEEEEEEECSSCEEEEEE
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc--------------eeec----cccCceEEEEEEeCCCCCEEEEc
Confidence 4578888864 56899999999999998875331 1111 15678999998 5555545554
Q ss_pred ecCCeEEEeecCcccccc
Q 043572 107 FCDQCLFLTDSLLTQPLK 124 (997)
Q Consensus 107 l~d~~l~~~~l~~l~~~~ 124 (997)
-.|+.|++|++..-+++.
T Consensus 148 ~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp ETTSEEEEECSSCSSCSE
T ss_pred cCCCcEEEEECCCCcEEE
Confidence 558999999987755543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=94.76 E-value=2.5 Score=45.80 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=87.9
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc---------
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV--------- 100 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~--------- 100 (997)
..|.|++.. ++.|+.|+.||.+..|.+...... ..... . -....|..+..-|..
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-----------SSAEK-E---NHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-----------ECCTT-T---SCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-----------eeecc-c---CCCceeeeeeeccccccccccCCC
Confidence 478888864 568999999999999988632110 00000 0 133456666666554
Q ss_pred -CcEEEEecCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccc
Q 043572 101 -GKVLLLFCDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIK 178 (997)
Q Consensus 101 -~~lLv~l~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 178 (997)
..++.+-.|++|.+|+... ....... -...+..++..+
T Consensus 184 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~--------------------------------------- 223 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISP--------------------------------------- 223 (343)
T ss_dssp CCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECT---------------------------------------
T ss_pred CCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECC---------------------------------------
Confidence 4344444588999999421 1111110 111233333221
Q ss_pred cCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECCcEEEEEecCCcc
Q 043572 179 ANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVNGYSLFSCVTGQS 255 (997)
Q Consensus 179 ~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~~y~lidl~~g~~ 255 (997)
++ ..|+.+. .+.|.+|.+.... ...+.+.....+.+++|.. ..+.+|......++|+.++..
T Consensus 224 -------------~g-~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 224 -------------NG-KYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288 (343)
T ss_dssp -------------TS-SEEEEEETTCEEEEEESSCCS-SCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred -------------CC-CEEEEEcCCCeEEEEECCCCc-ccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence 12 2344444 4568888773321 1112233455688999884 357788888999999987765
Q ss_pred ee
Q 043572 256 GV 257 (997)
Q Consensus 256 ~~ 257 (997)
.+
T Consensus 289 ~~ 290 (343)
T 2xzm_R 289 AP 290 (343)
T ss_dssp CS
T ss_pred Cc
Confidence 44
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=2.5 Score=47.36 Aligned_cols=201 Identities=12% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCCcceEEEeec-ccCcEEEEecCCeEEEeecCcccc------ccccccccceEEEEeecccCCcccccccccccccccc
Q 043572 87 ADSPVESIFVLD-DVGKVLLLFCDQCLFLTDSLLTQP------LKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLA 159 (997)
Q Consensus 87 ~~~~I~qi~vl~-~~~~lLv~l~d~~l~~~~l~~l~~------~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 159 (997)
...+|..|...| +.+.++.+-.||+|.+|++...+. .....-...|+.++..+
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------------- 121 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-------------------- 121 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--------------------
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--------------------
Confidence 457899999999 777565555688999999866221 11111122344444322
Q ss_pred ccCCcccchhhhhccCccccCCccchhcccccCCceEEEEEEC-ceEEEEEEe---CC-e-----EEEEEeEec-----C
Q 043572 160 NASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVIIG-KRLVLIELV---NG-S-----FVILKEIQC-----M 224 (997)
Q Consensus 160 ~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~k-kki~i~~~~---~~-~-----~~~~kei~~-----~ 224 (997)
++ ..++++.. ..|.+|.+. .+ . ...++.+.+ .
T Consensus 122 --------------------------------~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 168 (437)
T 3gre_A 122 --------------------------------NF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKN 168 (437)
T ss_dssp --------------------------------TS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSC
T ss_pred --------------------------------CC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccc
Confidence 11 23444443 567788773 22 1 112334432 2
Q ss_pred CcceEEEEe----CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEE-Ee-CCeEEEEccC-CCc
Q 043572 225 DGVKTMVWL----NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAH-GQP 296 (997)
Q Consensus 225 ~~~~~l~~~----~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~ 296 (997)
+.+.++.+. ++.++.|.. ....++|+.++.....+.............+..++.+|+ +. |+...+.|.. |.+
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 345666644 455777765 578899998876655554321111122233333445554 43 4555666643 333
Q ss_pred cccccccCCC--CCeEEEeC------cEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 297 VGGSLVFRKS--PDAVGELS------MYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 297 ~r~~i~w~~~--P~~i~~~~------PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
.+ ++..... ...+.+.. .++++-. ++.|.|.++.++..++++.-
T Consensus 249 ~~-~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 249 IR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp EE-EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred EE-EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 22 2222211 22332221 1666554 45799999999998888763
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=94.67 E-value=2.2 Score=46.22 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=102.3
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEE-eCCEEEEEE--CCcEEEEEecCCcceeeecCCCC---CCCC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVW-LNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDV---SCPP 268 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~-~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~---~~~p 268 (997)
+.|+.. ..|.++.... .+..+.+.....|..+++ .++.++|+. .....++|+.+++....++.+.. ...|
T Consensus 56 lyv~~~~~~~v~viD~~t--~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINT--FKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEEEEGGGTEEEEEETTT--CCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEEEEcCCCEEEEEECcc--cEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 455544 4566655443 344455555577889988 567899997 57889999998887766665431 1134
Q ss_pred ceEEcCCCCeEEEEe---CCeEEEEccC-CCccccccccCCCCCeEEEeC-cEEEEEE--C----------CeEEEEecC
Q 043572 269 MLKLLSKEQKVLLLV---DNVGVFVDAH-GQPVGGSLVFRKSPDAVGELS-MYVVVLR--G----------GKMELYHKK 331 (997)
Q Consensus 269 ~i~~~~~~~e~Ll~~---~~~g~fv~~~-G~~~r~~i~w~~~P~~i~~~~-PYll~~~--~----------~~ieI~~~~ 331 (997)
.-..+. ++.+.++. ++....+|.. |... .++.-...|..+++.. --+++.. . +.|.+++..
T Consensus 134 ~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~-~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 134 EQMVQY-GKYVYVNCWSYQNRILKIDTETDKVV-DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp CCEEEE-TTEEEEEECTTCCEEEEEETTTTEEE-EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEE-EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 322233 44666663 4556667764 4333 2444456688888764 2333333 2 579999999
Q ss_pred CCceEEEEecCCCCCCCceecccccCCCcEEEEEcCCeEEEEee
Q 043572 332 SGICVQAVTFGGEGGGQCIATDEECGAGKLLVVATPTKVICYQK 375 (997)
Q Consensus 332 ~~~lvQ~i~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V~~l~~ 375 (997)
++.+++++.++....+..+..+ .+++.+|++.. .|+.+.+
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~-~v~~~d~ 251 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLN---GTRDTLYWINN-DIWRMPV 251 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEEC---TTSCEEEEESS-SEEEEET
T ss_pred CCeEEEEEecCCCCCceeEEEe---cCCCEEEEEcc-EEEEEEC
Confidence 9999999987642111222221 12455666665 7777654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=5.7 Score=46.38 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=91.3
Q ss_pred EEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEEEEEE--CCcEEEEEecCCcceeeecCCCC--
Q 043572 196 VFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDV-- 264 (997)
Q Consensus 196 ~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~-- 264 (997)
.++|+. ...|.+|.........++++.....|.+++|. |..++++. ...+.++|..+++....++..+.
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 344444 35677777621224555667666778999886 34688885 57899999988877666654321
Q ss_pred -------CCCCc-eEEcCCCCeEEEEe--CCeEEEEccC-CCccc-cccccCCCCCeEEEeC--cEEEEEE--CCeEEEE
Q 043572 265 -------SCPPM-LKLLSKEQKVLLLV--DNVGVFVDAH-GQPVG-GSLVFRKSPDAVGELS--MYVVVLR--GGKMELY 328 (997)
Q Consensus 265 -------~~~p~-i~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r-~~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~ 328 (997)
..++. +..-+++++++++. ++....+|.. +.... .++.-...|..+++.. -|+++.. .+.|.|.
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 11222 22223455777664 3455566653 32221 1333345688888863 3777654 5899999
Q ss_pred ecCCCceEEEEec
Q 043572 329 HKKSGICVQAVTF 341 (997)
Q Consensus 329 ~~~~~~lvQ~i~~ 341 (997)
+..++.++++++.
T Consensus 352 D~~tg~l~~~i~~ 364 (543)
T 1nir_A 352 DSKDRRLSALVDV 364 (543)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEeecc
Confidence 9999999999985
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=47.68 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=34.1
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCC-CCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSIT-GRDFK 984 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t-~~~f~ 984 (997)
+.+..|++|...+.. ..+..||||.||..|.... ....||. ...+.
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccC-CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 356789999998875 3467899999999999763 2356994 44443
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.023 Score=46.45 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.1
Q ss_pred cCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 938 NDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.....|++|...+.. ...++.||||+||..|+... ....||.++
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr 58 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcC
Confidence 456789999998864 45778899999999999864 235699554
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.038 Score=46.36 Aligned_cols=49 Identities=8% Similarity=0.194 Sum_probs=36.2
Q ss_pred EcCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCC-CCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITG-RDFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~-~~f~~ 985 (997)
+.....|++|...+.. ..+.+.||||+||..|+... ....||.+ ..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3456799999999875 35667899999999999864 34569944 44433
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=94.38 E-value=6.6 Score=42.97 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=114.5
Q ss_pred eeeEEeecCCeEEEEcC-----------CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 33 SISPISDCQVLIYIGTQ-----------SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~-----------~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
.+.|++..++.++.|.. ++.+..|.+........ ......+... .-....+.-+..-|+..
T Consensus 75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE-------FLTSVDFDAS-TNADDYTKLVYISREGT 146 (365)
T ss_dssp CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE-------EEEEECSSCC-CCTTCCEEEEEECTTSS
T ss_pred ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE-------Eeeeeceeec-CCcccCEEEEEEcCCCC
Confidence 56788888888888764 55677776654331100 0000111100 00112344556667777
Q ss_pred cEEEEec--CCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcccc
Q 043572 102 KVLLLFC--DQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKA 179 (997)
Q Consensus 102 ~lLv~l~--d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 179 (997)
.++++-+ |++|++|++...+++..+.-...|..++..+
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp---------------------------------------- 186 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST---------------------------------------- 186 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT----------------------------------------
T ss_pred EEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc----------------------------------------
Confidence 5544222 6799999998766544332222344444322
Q ss_pred CCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeCC--EEEEEECC-----cEEEEEec
Q 043572 180 NGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLND--SIIVGTVN-----GYSLFSCV 251 (997)
Q Consensus 180 ~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~~--~l~vg~~~-----~y~lidl~ 251 (997)
++ ..++.+..+.+.++....+......... -...+.++.|..+ .++.|... .....|+.
T Consensus 187 ------------dg-~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 187 ------------DG-KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp ------------TS-SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred ------------CC-ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 11 2456666777777665544333222111 2235678888743 45555433 24556665
Q ss_pred CCcceee--ecCCCCCCCCc-eEEcCCCCeEEEE--eCCeEEEEcc-CCCcccccccc-CCCCCeEEEe--CcEEEEEE-
Q 043572 252 TGQSGVI--FTLPDVSCPPM-LKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVF-RKSPDAVGEL--SMYVVVLR- 321 (997)
Q Consensus 252 ~g~~~~l--~~~~~~~~~p~-i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w-~~~P~~i~~~--~PYll~~~- 321 (997)
++..... ...... ..++ ...+.+++.+|.+ .|+...+.|. +|.+.+..+.= ......+++. ..||+..+
T Consensus 254 ~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp TTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred cceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 5443222 111111 1222 2334445566654 3455556665 45543211111 1223345553 33676554
Q ss_pred CCeEEEEecC
Q 043572 322 GGKMELYHKK 331 (997)
Q Consensus 322 ~~~ieI~~~~ 331 (997)
+++|.|.++.
T Consensus 333 D~tvrvw~ip 342 (365)
T 4h5i_A 333 ANTIHIIKLP 342 (365)
T ss_dssp TSEEEEEECC
T ss_pred CCeEEEEEcC
Confidence 5678888764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.36 E-value=6.3 Score=41.81 Aligned_cols=226 Identities=8% Similarity=0.034 Sum_probs=119.3
Q ss_pred EEee--cCCeEEEEcC-CceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC--
Q 043572 36 PISD--CQVLIYIGTQ-SGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ-- 110 (997)
Q Consensus 36 ci~~--~~~~l~iGT~-~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~-- 110 (997)
+++. .++.||+++. +|.+..|....... ...... ....++..+.+-|+.+.+++ ..++
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~s~dg~~l~~-~~~~~~ 106 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------------KVVAIQ---EGQSSMADVDITPDDQFAVT-VTGLNH 106 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSC-------------EEEEEE---ECSSCCCCEEECTTSSEEEE-CCCSSS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-------------eEEecc---cCCCCccceEECCCCCEEEE-ecCCCC
Confidence 4443 4556888876 78888776654321 011111 24445555888888886664 6655
Q ss_pred --eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 111 --CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 111 --~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
.|.+|++..-+.+..+..-.+...+++++
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp------------------------------------------------- 137 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISP------------------------------------------------- 137 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECT-------------------------------------------------
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECC-------------------------------------------------
Confidence 89999987654433222222233333322
Q ss_pred cccCCceEEEEE-EC-ce-EEEEEEeCC-eEEE--EEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcc---
Q 043572 189 QHCRGDNVFAVI-IG-KR-LVLIELVNG-SFVI--LKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQS--- 255 (997)
Q Consensus 189 ~~~~~~~~l~Va-~k-kk-i~i~~~~~~-~~~~--~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~--- 255 (997)
++.. ++++ .. .+ +.+|.+..+ .... .+.+.....+..+.|.. ..++++.. +...++|+.+++.
T Consensus 138 ---dg~~-l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 138 ---NGNG-LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp ---TSSC-EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred ---CCCE-EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 1111 3333 22 55 888887653 2222 22233345678898884 35777764 4688999998876
Q ss_pred eeeecCCCCCCCCceEEcCCCCeEEE-Ee--CCeEEEEccC-CCcccc-----ccccCCCC----CeEEEe--CcEEEEE
Q 043572 256 GVIFTLPDVSCPPMLKLLSKEQKVLL-LV--DNVGVFVDAH-GQPVGG-----SLVFRKSP----DAVGEL--SMYVVVL 320 (997)
Q Consensus 256 ~~l~~~~~~~~~p~i~~~~~~~e~Ll-~~--~~~g~fv~~~-G~~~r~-----~i~w~~~P----~~i~~~--~PYll~~ 320 (997)
...++.+ ..|.-..+..++.+|. +. ++....+|.. |....- .+.....| ..+++. .-++++.
T Consensus 214 ~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 214 LNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 5455543 2343334443446544 32 2334446654 444110 11111111 223443 3466655
Q ss_pred E--CCeEEEEecCCCc
Q 043572 321 R--GGKMELYHKKSGI 334 (997)
Q Consensus 321 ~--~~~ieI~~~~~~~ 334 (997)
. .+.|.|+++.+..
T Consensus 291 ~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 291 ANISRELKVFTISGKV 306 (331)
T ss_dssp ETTTTEEEEEETTSCE
T ss_pred cCCCCcEEEEEecCCc
Confidence 4 3578888887643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.5 Score=47.66 Aligned_cols=152 Identities=6% Similarity=0.024 Sum_probs=92.4
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... .....++ -...+|..+..-|+.+.++.+-.|
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~------------~~~~~~~---~h~~~v~~v~~sp~~~~l~s~s~D 126 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF------------ECVTTLE---GHENEVKSVAWAPSGNLLATCSRD 126 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E------------EEEEEEC---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe------------EEEEEcc---CCCCCceEEEEeCCCCEEEEEECC
Confidence 468888864 66899999999999998765321 0111111 146689999999988866665568
Q ss_pred CeEEEeecCccccccccc----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccch
Q 043572 110 QCLFLTDSLLTQPLKKLG----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVK 185 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 185 (997)
++|++|++..-.....+. -...+..++..+
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p---------------------------------------------- 160 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------------------------------------------- 160 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS----------------------------------------------
T ss_pred CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC----------------------------------------------
Confidence 999999986532211111 112233333221
Q ss_pred hcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEEC-CcEEEEEec
Q 043572 186 EEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGTV-NGYSLFSCV 251 (997)
Q Consensus 186 ~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~~-~~y~lidl~ 251 (997)
++. .++.+. .+.|.+|....+.+.....+.- ...|.+++|.. ..|+.|.. ....+.|..
T Consensus 161 ------~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 161 ------SQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ------SSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ------CCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 111 244444 4568888887766554444432 34678999984 45666654 467777764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=2.1 Score=50.04 Aligned_cols=157 Identities=5% Similarity=-0.060 Sum_probs=96.3
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
+..|.+++.. |..|..|+.+|.+..|.....- ..+..+..+..+.|..+..-|+.+.+.++-.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l---------------~~l~~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKML---------------TNLDSKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEE---------------EECCCSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCcee---------------eeccCCCccccccEEEEEEcCCCCEEEEEcC
Confidence 3457777754 6689999999999998732200 0000000023456999999999998888667
Q ss_pred CCeEEEeecCcccc-------ccccc-----cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCc
Q 043572 109 DQCLFLTDSLLTQP-------LKKLG-----FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSG 176 (997)
Q Consensus 109 d~~l~~~~l~~l~~-------~~~~~-----~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 176 (997)
||+|.+|++..-.. +..+. -...|..++..+
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP------------------------------------- 192 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE------------------------------------- 192 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------------------------------------
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-------------------------------------
Confidence 89999999865211 01100 001122222211
Q ss_pred cccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEE-EEEeEe-c-CCcceEEEEeCCEEEEEECCcEEEEEecCC
Q 043572 177 IKANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFV-ILKEIQ-C-MDGVKTMVWLNDSIIVGTVNGYSLFSCVTG 253 (997)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~-~~kei~-~-~~~~~~l~~~~~~l~vg~~~~y~lidl~~g 253 (997)
++ .++....+.+.+|.+.++... ..+.+. . ...|.+++|.|+.|..|..+...+.|+.++
T Consensus 193 ---------------dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~ 255 (588)
T 2j04_A 193 ---------------DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNY 255 (588)
T ss_dssp ---------------TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTT
T ss_pred ---------------Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCC
Confidence 22 345555677888888766532 122231 2 256899999987888888889999999866
Q ss_pred cce
Q 043572 254 QSG 256 (997)
Q Consensus 254 ~~~ 256 (997)
...
T Consensus 256 ~~~ 258 (588)
T 2j04_A 256 SIS 258 (588)
T ss_dssp EEE
T ss_pred eEE
Confidence 553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.14 E-value=2.9 Score=44.79 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=21.0
Q ss_pred EEEEEECCeEEEEecCCCceEEEEecCC
Q 043572 316 YVVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 316 Yll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++++. .+.|.++++.+++.++++....
T Consensus 269 ~l~~~-~~~v~~~d~~~~~~~~~~~~~~ 295 (349)
T 1jmx_B 269 QIYGV-LNRLAKYDLKQRKLIKAANLDH 295 (349)
T ss_dssp EEEEE-ESEEEEEETTTTEEEEEEECSS
T ss_pred EEEEE-cCeEEEEECccCeEEEEEcCCC
Confidence 55544 6789999999999999887654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=94.14 E-value=6.5 Score=41.39 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=48.8
Q ss_pred eeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEEEEe
Q 043572 32 LSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lLv~l 107 (997)
..|.|++. .++.|+.|+.||.+..|.+..... +....++ -...+|..+...+. .+.++.+-
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------------~~~~~l~---gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------------KLIDTLT---GHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------------CCCEEEC---CCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------------EEEEEEc---cccCCeEEEEecCCCcCCEEEEEc
Confidence 45777664 477899999999999999864321 0111111 15678999988754 34344444
Q ss_pred cCCeEEEeecCc
Q 043572 108 CDQCLFLTDSLL 119 (997)
Q Consensus 108 ~d~~l~~~~l~~ 119 (997)
.|++|++|++..
T Consensus 75 ~D~~v~iWd~~~ 86 (297)
T 2pm7_B 75 YDGKVMIWKEEN 86 (297)
T ss_dssp TTTEEEEEEBSS
T ss_pred CCCEEEEEEcCC
Confidence 589999999864
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=4.7 Score=49.50 Aligned_cols=278 Identities=10% Similarity=0.101 Sum_probs=135.5
Q ss_pred CCCCCccceeeeeEEee-cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccC
Q 043572 23 YSRSSPIRSLSISPISD-CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVG 101 (997)
Q Consensus 23 ~~~~~~~~~~~I~ci~~-~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~ 101 (997)
++..--+..+.|.||.. .+..|++||.+| |..|.=..-..+. ..+ ..+. .++...|..|...++..
T Consensus 34 ~~~~~gLs~n~v~~I~qD~~G~lWigT~~G-L~ryDG~~f~~~~-~~~-----~~~~------~l~~n~I~~i~~d~~g~ 100 (795)
T 4a2l_A 34 ISINEGLSQSTVFSIDQDKRGNMWFATYDG-VNKYDGYAFTVYQ-HNE-----DDPN------SIANDISRIVKTDSQGR 100 (795)
T ss_dssp ESGGGTCSSSCEEEEEECTTSCEEEEETTE-EEEECSSCEEEEC-CCT-----TCTT------SCSCSCEEEEEECTTSC
T ss_pred ccccCCCccceeEEEEEcCCCCEEEeecCc-CcccCCCceEEEe-CCC-----CCCC------cccccceeEEEECCCCC
Confidence 33333355678999875 456899999999 6666422111100 000 0000 13445688877665544
Q ss_pred cEEEEecCCeEEEeecCc--ccccccccccc--ceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCcc
Q 043572 102 KVLLLFCDQCLFLTDSLL--TQPLKKLGFLK--GISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGI 177 (997)
Q Consensus 102 ~lLv~l~d~~l~~~~l~~--l~~~~~~~~~k--g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 177 (997)
+.| -+++.|..|+... +.......... .+..++.+
T Consensus 101 -lWi-gT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d--------------------------------------- 139 (795)
T 4a2l_A 101 -VWI-GTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEI--------------------------------------- 139 (795)
T ss_dssp -EEE-EESSCEEEEETTTTEEEEECCEETTEECCCCEEEEE---------------------------------------
T ss_pred -EEE-EeCCchheeCCCCCeEEeccccccCCCceEEEEEEC---------------------------------------
Confidence 888 6777788887643 22111000000 01111111
Q ss_pred ccCCccchhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecC-Cc-ceEEEEe-CCEEEEEEC-CcEEEEEecCC
Q 043572 178 KANGVKVKEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCM-DG-VKTMVWL-NDSIIVGTV-NGYSLFSCVTG 253 (997)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~-~~-~~~l~~~-~~~l~vg~~-~~y~lidl~~g 253 (997)
..-.+.|++.+.|..|....+.|..... ..+ .. +.++... ++.|.+|+. .+...+|..++
T Consensus 140 ---------------~~g~lwi~t~~gl~~~~~~~~~~~~~~~-~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~ 203 (795)
T 4a2l_A 140 ---------------SPEQLLISTPEGLIMFDIKESKFIDDSF-STAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK 203 (795)
T ss_dssp ---------------ETTEEEEEETTEEEEEETTTTEEECSSS-CHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred ---------------CCCCEEEEECCceEEEECCCCEEEeccC-CCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence 1124778888877777655555554321 111 12 6677665 577999987 58889998776
Q ss_pred cceeeecCCCCCCCCceEEc--CCCCeEEEEeCCeEEE-EccCCCcccccccc--------CCC-CCeEEEe-CcEEEEE
Q 043572 254 QSGVIFTLPDVSCPPMLKLL--SKEQKVLLLVDNVGVF-VDAHGQPVGGSLVF--------RKS-PDAVGEL-SMYVVVL 320 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~--~~~~e~Ll~~~~~g~f-v~~~G~~~r~~i~w--------~~~-P~~i~~~-~PYll~~ 320 (997)
......+... ...+..+ ..++.+.+++.+-|++ ++..+...+ .+.. +.. ...+..+ .-.|.+-
T Consensus 204 ~~~~~~~~~~---~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 279 (795)
T 4a2l_A 204 TFEKVIPILG---TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIG 279 (795)
T ss_dssp CEEECC-------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEEEE
T ss_pred eEEEecCCCC---CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEEEE
Confidence 6554422211 1223222 2345788887544444 565432211 1111 011 1122222 2344444
Q ss_pred ECCeEEEEecCCCceEEEEecC---CCCCCCceecccccCCCcEEEEEcC-CeEEEEee
Q 043572 321 RGGKMELYHKKSGICVQAVTFG---GEGGGQCIATDEECGAGKLLVVATP-TKVICYQK 375 (997)
Q Consensus 321 ~~~~ieI~~~~~~~lvQ~i~~~---~~~~~~~i~~~~~~~~g~~~~v~s~-~~V~~l~~ 375 (997)
+.++|.+++..++.......-+ .......+.+.+....|. +++++. +.|+++.+
T Consensus 280 t~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 280 TFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp ESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred eCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 4558888887776543322111 111112222222222334 667764 66777654
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.018 Score=50.11 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+..|++|...+.. ....+.||||+||..|+... ....||.++
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcC
Confidence 45689999988865 34667899999999999863 345799654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.93 E-value=5.8 Score=42.58 Aligned_cols=160 Identities=8% Similarity=0.063 Sum_probs=88.5
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|.|++.. ++.|+.|+.||.+..|......... ...+....++ -...+|..+..-|+.+.++.+-.
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~---~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-------FEMDLLAIIE---GHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCEEEEEEC-------CEEEEEECTTSCEEEEEET
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc-------ccceeEEEEc---CCCCcEEEEEECCCCCEEEEEeC
Confidence 3468888864 5679999999999999885432100 0001111111 15668999999998875665555
Q ss_pred CCeEEEeecCcc----ccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 109 DQCLFLTDSLLT----QPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 109 d~~l~~~~l~~l----~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
|++|++|++..- +++..+. -...|+.++.++
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-------------------------------------------- 163 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-------------------------------------------- 163 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS--------------------------------------------
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC--------------------------------------------
Confidence 899999998431 1111111 111233333221
Q ss_pred chhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC----EEEEEE-CCcEEEEEecCC
Q 043572 184 VKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND----SIIVGT-VNGYSLFSCVTG 253 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~----~l~vg~-~~~y~lidl~~g 253 (997)
++ ..++.+. .+.|.+|....+.+..+..+.- ...|.++.|..+ .|+.|. .+...+.|+.++
T Consensus 164 --------~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 164 --------SE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp --------SS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred --------CC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 11 1244443 4568888876655555554432 346788888753 466664 456788887643
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.039 Score=45.78 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=34.7
Q ss_pred EcCCCcCccccCccCC-ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 937 INDESLCDSCHARLGT-KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
+.++..|++|...+.. ..+.+.||||+||..|+... ....||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr 59 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 59 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcC
Confidence 4567899999999875 34667799999999999864 235799443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.85 E-value=1.7 Score=49.05 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=49.6
Q ss_pred eeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe-cCC
Q 043572 34 ISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF-CDQ 110 (997)
Q Consensus 34 I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l-~d~ 110 (997)
+.|++. .++.|+.|+.+|.+..|.+..... ..+ + ....+|..|..-|..+.++++- .|+
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--------------~~~-~---~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--------------WNL-R---MHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSCBC--------------CCS-B---CCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCccee--------------EEE-e---cccceEEeeeecCCCceEEEEecCcc
Confidence 455553 466899999999999998753211 011 1 2567899999999887666533 478
Q ss_pred eEEEeecCcccc
Q 043572 111 CLFLTDSLLTQP 122 (997)
Q Consensus 111 ~l~~~~l~~l~~ 122 (997)
+|.+|++.....
T Consensus 274 ~v~iwd~~~~~~ 285 (435)
T 4e54_B 274 TVKIWDLRQVRG 285 (435)
T ss_dssp BCCEEETTTCCS
T ss_pred eeeEEecccccc
Confidence 999999877553
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.029 Score=46.21 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=36.8
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIKP 991 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~~ 991 (997)
.+...|++|...+... +..||||+||..|+... ....|| -...+....+.+|
T Consensus 13 ~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP--VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SSCCBCSSSSSBCSSE--EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCCccCCcccCCC--EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 3567899999888654 45699999999998864 235699 5555555444443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.69 E-value=8.9 Score=42.01 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=118.8
Q ss_pred eeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCc-EEEEecCC
Q 043572 34 ISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGK-VLLLFCDQ 110 (997)
Q Consensus 34 I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~-lLv~l~d~ 110 (997)
|.|++. .++.|+.|+.||.+..|.+.......+..+ ....+. -.+..|..+...|..+. ++.+-.|+
T Consensus 111 v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~~---gh~~~v~~~~~~~~~~~~l~s~s~D~ 180 (380)
T 3iz6_a 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMP-------VSRVLT---GHKGYASSCQYVPDQETRLITGSGDQ 180 (380)
T ss_dssp CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSST-------TCCBCC---CCSSCCCCCBCCSSSSSCEEEECTTS
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcc-------ceeecc---CCCcceEEEEEecCCCCEEEEECCCC
Confidence 444443 467899999999999999865432111100 111111 14567888888887554 44444578
Q ss_pred eEEEeecCcccccccc------ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 111 CLFLTDSLLTQPLKKL------GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~------~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
++.+|++..-..+... .-...+..++..+
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------------------------------------------- 215 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS--------------------------------------------- 215 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS---------------------------------------------
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec---------------------------------------------
Confidence 9999998764332211 0111222222211
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEE-CCcEEEEEecCCcceeeec
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~l~~ 260 (997)
.++...+.....+.|.+|...... ..++.+. ....|.+++|.. ..++.|. .....+.|+.+|.....+.
T Consensus 216 ------~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 ------LNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp ------SSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred ------CCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 011122233345567887765221 1122222 235688999984 4566664 4578999999887665554
Q ss_pred CCCC---CCCCce--EEcCCCCeEEEE-e-CCeEEEEcc-CCCcccc--cc-c-cCCCCCeEEEe--CcEEEEEE-CCeE
Q 043572 261 LPDV---SCPPML--KLLSKEQKVLLL-V-DNVGVFVDA-HGQPVGG--SL-V-FRKSPDAVGEL--SMYVVVLR-GGKM 325 (997)
Q Consensus 261 ~~~~---~~~p~i--~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~--~i-~-w~~~P~~i~~~--~PYll~~~-~~~i 325 (997)
.... ...+.+ ..+..++.+|++ . |+...+.|. .|..... .+ . -......+++. ..+|+.-. ++.|
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 3211 112222 333334455554 2 344444553 2332211 10 0 01223344443 33555443 4567
Q ss_pred EEEecCC
Q 043572 326 ELYHKKS 332 (997)
Q Consensus 326 eI~~~~~ 332 (997)
.|.++..
T Consensus 369 ~iW~~~~ 375 (380)
T 3iz6_a 369 KIWAFSG 375 (380)
T ss_dssp EEEECCS
T ss_pred EEEecCC
Confidence 7776654
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.031 Score=46.17 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=35.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC-----cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG-----ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~-----~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+... ++.||||.||..|+.... ...|| -++.+...
T Consensus 17 ~~~~~~C~IC~~~~~~~--~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP--VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE--EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe--EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45678999999988753 335999999999998753 23699 55555443
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.032 Score=47.37 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCCcCccccCccCC------------c-cEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT------------K-LFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~------------~-~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|++|...+.. . ..+.-+|||+||..|+..- ....||.++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 71 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcC
Confidence 56779999998853 2 3444569999999999863 345799554
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.033 Score=46.74 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=38.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~ 990 (997)
+.++-.|++|...+...+ +.||||.||..|..... ...|| ++..+....+.+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv--~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPV--IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEE--EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred CcccCCCCCccccccCCE--EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 556789999999887643 35999999999997642 45699 888876654443
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.023 Score=46.72 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=36.5
Q ss_pred EcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~ 986 (997)
..++..|++|...+.. ...+..||||+||..|+... ....|| -...+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999988754 34578899999999999764 245799 44445443
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.041 Score=49.25 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.1
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++..|++|...+... .++.-||||.||..|+..- ....||.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 96 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCC
Confidence 567899999888643 3667899999999999873 346799544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=93.27 E-value=11 Score=41.00 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred EEeCCEEEEEE-CCcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEeC-CeEEEEcc-CCCccccccccCC--
Q 043572 231 VWLNDSIIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLVD-NVGVFVDA-HGQPVGGSLVFRK-- 305 (997)
Q Consensus 231 ~~~~~~l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~-~~g~fv~~-~G~~~r~~i~w~~-- 305 (997)
...++.++++. ......+|..+|+..--.+.+.. ..+...++.+.++.. +....+|. +|+. .|..
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~l~~~~~~g~l~~~d~~tG~~-----~w~~~~ 305 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV-----NDFIVDGNRIYLVDQNDRVMALTIDGGVT-----LWTQSD 305 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE-----EEEEEETTEEEEEETTCCEEEEETTTCCE-----EEEECT
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC-----CCceEECCEEEEEcCCCeEEEEECCCCcE-----EEeecc
Confidence 34578888886 45788899988876544443321 111112335555543 34555664 4543 3422
Q ss_pred ----CCCeEEEeCcEEEEEEC-CeEEEEecCCCceEEEEecCCC-CCCCceecccccCCCcEEEEEc-CCeEEEEe
Q 043572 306 ----SPDAVGELSMYVVVLRG-GKMELYHKKSGICVQAVTFGGE-GGGQCIATDEECGAGKLLVVAT-PTKVICYQ 374 (997)
Q Consensus 306 ----~P~~i~~~~PYll~~~~-~~ieI~~~~~~~lvQ~i~~~~~-~~~~~i~~~~~~~~g~~~~v~s-~~~V~~l~ 374 (997)
.....++...+|++... +.|.+.+..+|+.+....+... ..+...+. .+. +++.+ ++.|+++.
T Consensus 306 ~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~-----~~~-l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 306 LLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA-----DGK-LLIQAKDGTVYSIT 375 (376)
T ss_dssp TTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE-----TTE-EEEEBTTSCEEEEE
T ss_pred cCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE-----CCE-EEEEeCCCEEEEEe
Confidence 12334556678877764 5799999999999888877432 11111221 234 44554 56788775
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.022 Score=51.94 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEeccccccC-------cccCCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQG-------ESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~~-------~~~~~t~~ 981 (997)
++..|++|...+... ...+.||||+||..|+.... ...||.++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR 89 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence 567899999888532 34478999999999987532 45799554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.24 E-value=12 Score=41.42 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccc----cc-ccccceEEEEeecccCCcccccccccccccccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLK----KL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANA 161 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~----~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (997)
....|..+...|....++.+-.|+.+.+|+...-+... .. .....|..++..+.
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~--------------------- 287 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW--------------------- 287 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT---------------------
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC---------------------
Confidence 45678888888888866665568899999986543211 11 11112333332211
Q ss_pred CCcccchhhhhccCccccCCccchhcccccCCceEEEEEE---CceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CE
Q 043572 162 STSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII---GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DS 236 (997)
Q Consensus 162 ~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~---kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~ 236 (997)
+...++++. .+.|.+|....+ .....+.....+.++.|.. +.
T Consensus 288 -------------------------------~~~~la~~~gs~D~~I~iwd~~t~--~~~~~~~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 288 -------------------------------QSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAHSQVCSILWSPHYKE 334 (420)
T ss_dssp -------------------------------CTTEEEEEECTTTCEEEEEETTTT--EEEEEEECSSCEEEEEEETTTTE
T ss_pred -------------------------------cccEEEEEeecCCCEEEEEeCCcc--ccceeeccccceeeeeecCCCCe
Confidence 112234443 356788776654 3334455667788888884 45
Q ss_pred EEEEE---CCcEEEEEecCCcceeee
Q 043572 237 IIVGT---VNGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 237 l~vg~---~~~y~lidl~~g~~~~l~ 259 (997)
+++|. .+...++|+.+++....+
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l 360 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAEL 360 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEE
Confidence 76664 357888998877543333
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.018 Score=47.19 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=32.7
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+.+...|++|...+.. ++.||||.||..|+... ....||.+
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~C 54 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPIC 54 (70)
T ss_dssp CCCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCCCSSCHHH
T ss_pred CCCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHCcCcCCCc
Confidence 4567899999998876 77899999999999864 24568833
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.09 E-value=1.9 Score=52.07 Aligned_cols=76 Identities=16% Similarity=-0.049 Sum_probs=53.7
Q ss_pred eeeeEEeecC----CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDCQ----VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~~----~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..|+|++... ..|+.|+.||.+..|.+..... ...+. -+..+|..+...|+.+.++.+-
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------~~~~~---~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--------------RSTLA---GHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--------------EEEEc---CCCCCEEEEEEeCCCCEEEEEe
Confidence 3588888653 3589999999999998864321 11111 1456899999999888555555
Q ss_pred cCCeEEEeecCcccccc
Q 043572 108 CDQCLFLTDSLLTQPLK 124 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~ 124 (997)
.|++|++|++..-.++.
T Consensus 581 ~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp TTSBCEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCceEE
Confidence 68899999987755443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=93.03 E-value=1.3 Score=48.57 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=45.4
Q ss_pred CeEEE--EcCCceEEEEEeCCCCCCCCCCCCC-CCCccc-cccccccccCCCcceEEEeecccCcEEEEecCCe-EEEee
Q 043572 42 VLIYI--GTQSGSLILLSLDPTAATTLHVPNT-TPSQQH-VSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC-LFLTD 116 (997)
Q Consensus 42 ~~l~i--GT~~G~ll~y~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~-l~~~~ 116 (997)
+.+.+ |+.+|.+..|.+...........+. .....+ ...++ -...+|..+..-|+...++.+-.|++ +.+|+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55555 7888888888876532100000000 000001 11111 25678999999998886666556888 99999
Q ss_pred cCccccccc
Q 043572 117 SLLTQPLKK 125 (997)
Q Consensus 117 l~~l~~~~~ 125 (997)
+...+++..
T Consensus 225 ~~~~~~~~~ 233 (355)
T 3vu4_A 225 TEDGVLVRE 233 (355)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEEEE
Confidence 987655443
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=92.86 E-value=0.17 Score=47.75 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCC-CCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITG-RDFK 984 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~-~~f~ 984 (997)
++-.|++|...+... +..||||.||..|+... ....||.+ ..+.
T Consensus 52 ~~~~C~iC~~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA--VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE--EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc--eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 345799999888753 45799999999998764 24569954 4443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=4.6 Score=49.62 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=53.1
Q ss_pred EEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCC--CCCC-CCc
Q 043572 196 VFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLP--DVSC-PPM 269 (997)
Q Consensus 196 ~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~--~~~~-~p~ 269 (997)
.+.|++. +.|..|....+.+...........+.++... ++.|.+|+. .+...+|..+++........ ..+. ...
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 4667775 4666665545555543221112346666654 467999984 58999998766554432211 0111 122
Q ss_pred eEEc--CCCCeEEEEeCCeEEE-EccC
Q 043572 270 LKLL--SKEQKVLLLVDNVGVF-VDAH 293 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~f-v~~~ 293 (997)
|..+ ..++.+.+++++ |++ ++..
T Consensus 265 i~~i~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp EEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred EEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence 3333 345688888877 665 4543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=92.72 E-value=11 Score=39.50 Aligned_cols=168 Identities=10% Similarity=0.070 Sum_probs=94.1
Q ss_pred eeeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc--cCcEE
Q 043572 31 SLSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD--VGKVL 104 (997)
Q Consensus 31 ~~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~--~~~lL 104 (997)
...|.|++.. ++.|+-|+.||.+..|.+..... .....+. ....+|..+...|. ...++
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~------------~~~~~~~---~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW------------SQIAVHA---VHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB------------CCCEEEC---CCSSCEEEEEECCGGGCSEEE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce------------EEEEEee---cCCCceeEEEeCcCCCCcEEE
Confidence 3578888853 67899999999999999864321 0011111 14568999999887 45455
Q ss_pred EEecCCeEEEeecCcccccc--c-cccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCC
Q 043572 105 LLFCDQCLFLTDSLLTQPLK--K-LGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANG 181 (997)
Q Consensus 105 v~l~d~~l~~~~l~~l~~~~--~-~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 181 (997)
++-.|+++.+|++..-.... . ..-..+|..++..+....+ .+.+ .+
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~----------------------------~~~~---~~ 166 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE----------------------------DGEH---NG 166 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc----------------------------cccC---CC
Confidence 54568899999986532110 0 0112234444443311000 0000 00
Q ss_pred ccchhcccccCCceEEEEEE-CceEEEEEEeCCe--EEEEEeEec-CCcceEEEEeCC-----EEEEEE-CCcEEEEEec
Q 043572 182 VKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGS--FVILKEIQC-MDGVKTMVWLND-----SIIVGT-VNGYSLFSCV 251 (997)
Q Consensus 182 ~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~--~~~~kei~~-~~~~~~l~~~~~-----~l~vg~-~~~y~lidl~ 251 (997)
. .....++.+. .+.|.+|.+..+. +.....+.- .+.|.+++|..+ .|..|. .+...+.|++
T Consensus 167 ~---------~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 167 T---------KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred C---------CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 0 0112455554 4568999887642 334444432 346899999853 355554 4578889987
Q ss_pred CC
Q 043572 252 TG 253 (997)
Q Consensus 252 ~g 253 (997)
++
T Consensus 238 ~~ 239 (297)
T 2pm7_B 238 NE 239 (297)
T ss_dssp ST
T ss_pred CC
Confidence 64
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.031 Score=44.70 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=35.0
Q ss_pred CCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCc
Q 043572 939 DESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKD 986 (997)
Q Consensus 939 ~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~ 986 (997)
++..|++|...+.. ..++..||||+||..|.... ....|| -...+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 45789999998854 34677899999999999864 245699 44445443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=21 Score=41.79 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=87.8
Q ss_pred EEEEEECc-eEEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEEEEEE--CCcEEEEEecCCcceeeecCCCCC-
Q 043572 196 VFAVIIGK-RLVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVS- 265 (997)
Q Consensus 196 ~l~Va~kk-ki~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~- 265 (997)
+++|+... .|.+|.......+...++.....|..+.+. |..++|+. .+.+.++|..+.+....++.....
T Consensus 210 ~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 210 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 35555543 566666531234556777777788899887 34688873 478999998887766666654210
Q ss_pred ------CCCceEE---cCCCCeEEEEeC--CeEEEEccCCCc-cc-cccccCCCCCeEEEeC--cEEEEEE--CCeEEEE
Q 043572 266 ------CPPMLKL---LSKEQKVLLLVD--NVGVFVDAHGQP-VG-GSLVFRKSPDAVGELS--MYVVVLR--GGKMELY 328 (997)
Q Consensus 266 ------~~p~i~~---~~~~~e~Ll~~~--~~g~fv~~~G~~-~r-~~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~ 328 (997)
..|.+.. -+...+|++... +...++|..... .. .++.-...|..+.+.. -|+++.. .+.|.|+
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 1222222 233457777643 455566654321 10 1222233444555542 4777654 6899999
Q ss_pred ecCCCceEEEEec
Q 043572 329 HKKSGICVQAVTF 341 (997)
Q Consensus 329 ~~~~~~lvQ~i~~ 341 (997)
+..++.++.+++.
T Consensus 370 D~~t~kl~~~i~v 382 (567)
T 1qks_A 370 DTKEGKLVAIEDT 382 (567)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999999987
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=92.33 E-value=2.1 Score=47.22 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=51.7
Q ss_pred eeeeEEee---cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 32 LSISPISD---CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 32 ~~I~ci~~---~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
..|.|+.. .++.++.|+.||.+..|.+..... ....+. -...+|..+...|+.+.++.+-.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------AVRTYH---GHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------CCEEEC---CCSSCCCEEEECTTSSEEEEECS
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------ceEEEC---CcCCCeEEEEEecCCCeEEEEcC
Confidence 45666665 356789999999999998863321 011111 14668999999999886666556
Q ss_pred CCeEEEeecCccc
Q 043572 109 DQCLFLTDSLLTQ 121 (997)
Q Consensus 109 d~~l~~~~l~~l~ 121 (997)
|+++++|++..-.
T Consensus 270 D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 270 DGTCRLFDMRTGH 282 (380)
T ss_dssp SSCEEEEETTTTE
T ss_pred CCeEEEEECCCCc
Confidence 8899999987643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.29 E-value=25 Score=42.59 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=70.0
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEe--EecC-CcceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCC-CC-CCCc
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKE--IQCM-DGVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD-VS-CPPM 269 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~ke--i~~~-~~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~-~~-~~p~ 269 (997)
.+.|++.+.+..|....+.|..+.. -.++ ..+.++... ++.|.+|+.++...+|..++..... +.+. .. ....
T Consensus 114 ~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (758)
T 3ott_A 114 TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI-PLPVHSSQSNLF 192 (758)
T ss_dssp EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE-CCCCCTTCSSCC
T ss_pred cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe-cCCCccccccce
Confidence 4788888876666655556655411 1122 245676655 4679999999988898776654332 2221 11 1223
Q ss_pred eEEc--C-CCCeEEEEeCCeEEE-EccCCCccccccccCC-CCCeEEEe-CcEEEEEECCeEEEEecCCCce
Q 043572 270 LKLL--S-KEQKVLLLVDNVGVF-VDAHGQPVGGSLVFRK-SPDAVGEL-SMYVVVLRGGKMELYHKKSGIC 335 (997)
Q Consensus 270 i~~~--~-~~~e~Ll~~~~~g~f-v~~~G~~~r~~i~w~~-~P~~i~~~-~PYll~~~~~~ieI~~~~~~~l 335 (997)
+..+ . .++.+.+++++ |++ ++......+..-..+. ....+..+ .-.|.+-+.+.+.+++..++..
T Consensus 193 i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 193 VNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL 263 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCC
T ss_pred eEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE
Confidence 4333 2 23357777754 655 5643321111000010 11122222 2234444566788888766544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=92.19 E-value=3.3 Score=43.92 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCC------cceEEEEe--CCEEEEEE-------------CCcEEEEEecCC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMD------GVKTMVWL--NDSIIVGT-------------VNGYSLFSCVTG 253 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~------~~~~l~~~--~~~l~vg~-------------~~~y~lidl~~g 253 (997)
++|+.. ..|.+|....++ ..+.+..+. .+..+.|. ++.++++. .....++|+.++
T Consensus 48 l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 125 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125 (337)
T ss_dssp EEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred EEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC
Confidence 445543 356666654443 333444443 67788887 45688884 478899999888
Q ss_pred cceeeecCCCCCCCCceEEcCCCCeEEEEeCCeEEEEccC
Q 043572 254 QSGVIFTLPDVSCPPMLKLLSKEQKVLLLVDNVGVFVDAH 293 (997)
Q Consensus 254 ~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~~~~g~fv~~~ 293 (997)
+....++.+. .|.-..+..++.+|+..++....+|..
T Consensus 126 ~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~i~~~d~~ 162 (337)
T 1pby_B 126 SRRKAFEAPR---QITMLAWARDGSKLYGLGRDLHVMDPE 162 (337)
T ss_dssp EEEEEEECCS---SCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred cEEEEEeCCC---CcceeEECCCCCEEEEeCCeEEEEECC
Confidence 7666665532 233333443445444435555556653
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=91.98 E-value=0.044 Score=44.14 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=34.9
Q ss_pred CCCcCccccC-ccCCc--cEEEcCCCeEEEecccccc---CcccCC-CCCCCCCcc
Q 043572 939 DESLCDSCHA-RLGTK--LFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDV 987 (997)
Q Consensus 939 ~~~~C~vC~k-~l~~~--~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~ 987 (997)
++..|++|.. .+.+. .+++.||||+||..|+... ....|| -++.+.+.-
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4568999998 66543 3567899999999999876 335699 555554443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=91.89 E-value=16 Score=39.36 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred EEEEEE--CceEEEEEEeCCeEEEEEeEecC----CcceEEEEe--CCEEEEEEC---CcEEEEEec--CCcceeeecCC
Q 043572 196 VFAVII--GKRLVLIELVNGSFVILKEIQCM----DGVKTMVWL--NDSIIVGTV---NGYSLFSCV--TGQSGVIFTLP 262 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~~~~~~~~kei~~~----~~~~~l~~~--~~~l~vg~~---~~y~lidl~--~g~~~~l~~~~ 262 (997)
.++|+. ..+|.+|.+..+.+.....+... ..+..+.|. |..|+++.. +...+++++ +|....+-...
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 355555 56789999887777666655432 235688887 445877754 468888885 55544443222
Q ss_pred CCCCCCceEEcCCCCeEEEEeC---C-eEEE-Ecc-CCCcc
Q 043572 263 DVSCPPMLKLLSKEQKVLLLVD---N-VGVF-VDA-HGQPV 297 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll~~~---~-~g~f-v~~-~G~~~ 297 (997)
. +..|.-..+..++.+|++.+ + +.+| +|. .|...
T Consensus 304 ~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 304 T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 2 33455445554556555432 2 3444 564 45544
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.054 Score=45.46 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=35.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---------cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---------ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---------~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+..... .||||.||..|+.... ...|| -+..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4567889999988876433 6999999999998642 34699 44555543
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.034 Score=44.51 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=27.6
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ 972 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~ 972 (997)
+.++..|++|...+...+ +.||||+||..|+...
T Consensus 17 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV--TIDCGHNFCLKCITQI 50 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE--ECTTSSEECHHHHHHH
T ss_pred CccCCCCCcCCchhCCeE--EeCCCCcchHHHHHHH
Confidence 556789999998887643 3499999999999865
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=91.70 E-value=5.7 Score=40.95 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=87.1
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC----cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCe
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN----GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNV 286 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~----~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~ 286 (997)
+..+++++.+... +.+.|.++.|++++.. ....+|+.+|++..-.+.+.....--+...+ +.+.+. .++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCCE
Confidence 5667787654443 7899999999999775 6889999999887766665321111233332 344444 4788
Q ss_pred EEEEccC-CCccccccccCCCCCeEEEeCcEEEEE-ECCeEEEEecCCCceEEEEecCC
Q 043572 287 GVFVDAH-GQPVGGSLVFRKSPDAVGELSMYVVVL-RGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 287 g~fv~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~-~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+..+|.. ++.. +++.....+-.++...-.+++- ..+.|.+++..|...+.+|.+..
T Consensus 87 v~v~D~~tl~~~-~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 87 GFVYDLATLTPR-ARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEEEETTTTEEE-EEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEECCcCcEE-EEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 8889974 4433 3666667777888776655554 35789999999999999998753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=91.60 E-value=15 Score=38.67 Aligned_cols=132 Identities=9% Similarity=0.049 Sum_probs=77.7
Q ss_pred eEEEEEEeCCeEEEEEeEecCCcceEEEEeCC--EEEEEEC--Cc-EEEEEecCCc-ce----eeecCCCCCCCCceEEc
Q 043572 204 RLVLIELVNGSFVILKEIQCMDGVKTMVWLND--SIIVGTV--NG-YSLFSCVTGQ-SG----VIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 204 ki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~--~l~vg~~--~~-y~lidl~~g~-~~----~l~~~~~~~~~p~i~~~ 273 (997)
.|.+|....++ ..+.+.....+..++|..+ .++++.. .. ..+++++.+. .. ..++. +..|.-..+
T Consensus 109 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~ 183 (331)
T 3u4y_A 109 NMQSYSFLKNK--FISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---GTRPFNITF 183 (331)
T ss_dssp EEEEEETTTTE--EEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---SSSEEEEEE
T ss_pred cEEEEECCCCC--eEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---CCCccceEE
Confidence 67777665543 3345556677889999854 5777743 45 7888876432 21 12222 233544455
Q ss_pred CCCCe-EEEEe--CCeEEEEcc-CCCcc--ccccccCCCCCeEEEe--CcEEEEEE--CCeEEEEecCCCce--EEEEe
Q 043572 274 SKEQK-VLLLV--DNVGVFVDA-HGQPV--GGSLVFRKSPDAVGEL--SMYVVVLR--GGKMELYHKKSGIC--VQAVT 340 (997)
Q Consensus 274 ~~~~e-~Ll~~--~~~g~fv~~-~G~~~--r~~i~w~~~P~~i~~~--~PYll~~~--~~~ieI~~~~~~~l--vQ~i~ 340 (997)
..++. ++++. ++....++. .|... ..++.-...|..+++. ..|+++.. .+.|.|+++.++.+ ++++.
T Consensus 184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 44445 44443 345555665 35541 1244445678888886 45777664 45799999999887 66654
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.099 Score=44.81 Aligned_cols=49 Identities=8% Similarity=0.141 Sum_probs=35.9
Q ss_pred EcCCCcCccccCccCCcc--EEEcCCCeEEEeccccccC-----cccCCCCC-CCCC
Q 043572 937 INDESLCDSCHARLGTKL--FAMYPDDTIVCYKCYRRQG-----ESTSITGR-DFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~--f~v~p~g~~~H~~C~~~~~-----~~~~~t~~-~f~~ 985 (997)
+.+...|++|...+.... .++.||||.||..|+.... ...||.++ .+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456788999999987632 5678999999999998652 25699443 4433
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.091 Score=44.63 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=35.0
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--------CcccCCC-CCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--------GESTSIT-GRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--------~~~~~~t-~~~f~~~ 986 (997)
+.+...|++|...+.... +.||||.||..|+... ....||. ...+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL--SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB--CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCce--eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456789999999887643 3599999999999864 1456994 4445443
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.046 Score=42.76 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=31.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc-----CcccCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ-----GESTSIT 979 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~-----~~~~~~t 979 (997)
+.+...|++|...+.... +.||||+||..|+... ....||.
T Consensus 12 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV--IIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC--CCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred cccCCCCccCCcccCccE--eCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 456789999999987653 3699999999999865 2345664
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.043 Score=44.62 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=33.6
Q ss_pred EcCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 937 INDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+.+...|++|...+.. ..+++.||||+||..|+... ....||.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~C 62 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTT
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCC
Confidence 4567899999988754 23578899999999999865 24569944
|
| >3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.043 Score=49.16 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=76.4
Q ss_pred HHHHhhcchHHHHHHHHHhcCCHHHHHHHHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccCCCCHHHHhhhC
Q 043572 803 ILYRKLGQETLVLQILALKLEDSEAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGESLDPLQVLETL 882 (997)
Q Consensus 803 ~Ll~klg~h~eAL~il~~~l~D~~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~~ld~~~VL~~l 882 (997)
++|.|.+++++|+.+.- +-+.+..|++++..-++.++-..||++++...+ .+--...|-...+.|.|..||++-
T Consensus 14 ~~ykkN~rw~qSI~L~K-kDkLykDAietAa~S~d~elaEeLL~yFVe~g~-----kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 14 LVPRGSHMWKQSVELAK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEK-----RECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp CCSSSCCCCSSCCCCCS-CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCS-----HHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred chhhccccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHHHhccChHHHHHHH
Confidence 35677788888887776 457788999999999999999999999998743 344557777888999999999986
Q ss_pred CCCcchhhhHHHHHHHHHHHHHH
Q 043572 883 SPDMPLQLASDTILRMLRARLHH 905 (997)
Q Consensus 883 P~~~~i~~l~~fL~~~l~~~~~~ 905 (997)
=-+--.+-..+|+++++++++.+
T Consensus 88 Wr~~l~Df~mPY~Iqv~re~~~k 110 (125)
T 3qil_A 88 WRHNIMDFAMPYFIQVMKEYLTK 110 (125)
T ss_dssp SSSSCCCCCCCSHHHHHHHHHHH
T ss_pred HHhccccccchhHHHHHHHHHHH
Confidence 54433555778999999987753
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.099 Score=44.16 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f 983 (997)
..-.|++|...+... ++.||||+||..|+... ....|| -+..+
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNP--VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSE--EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCe--eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 456899999988763 35899999999999765 235699 44444
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=18 Score=37.22 Aligned_cols=144 Identities=9% Similarity=0.028 Sum_probs=76.8
Q ss_pred CcceEEEEeC-CEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEEe--CCeEEEEccCCCcccc
Q 043572 225 DGVKTMVWLN-DSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDAHGQPVGG 299 (997)
Q Consensus 225 ~~~~~l~~~~-~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~ 299 (997)
..+..+.+.. +.++++.. .....+|. +|..... ........|.-..+..++.+.++. ++....++.+|....-
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~ 218 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF 218 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEE
Confidence 3567888774 46888864 57888887 6765543 222222334444444445666665 3455557776664321
Q ss_pred ccc-cCCCCCeEEEeCc-EEEEE--ECCeEEEEecCCCceEEEEecCCCCC-CCceecccccCCCcEEEEE-cCCeEEEE
Q 043572 300 SLV-FRKSPDAVGELSM-YVVVL--RGGKMELYHKKSGICVQAVTFGGEGG-GQCIATDEECGAGKLLVVA-TPTKVICY 373 (997)
Q Consensus 300 ~i~-w~~~P~~i~~~~P-Yll~~--~~~~ieI~~~~~~~lvQ~i~~~~~~~-~~~i~~~~~~~~g~~~~v~-s~~~V~~l 373 (997)
.+. -...|..+++..- .+.+. ..+.|.+++. ++. +..+.++.... ...+. . ..|. ++++ +.+.|+++
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~-~---~~g~-l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGIC-F---DGET-IWFAMECDKIGKL 291 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEE-E---CSSC-EEEEETTTEEEEE
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEE-e---cCCC-EEEEecCCcEEEE
Confidence 111 1245677777633 44444 3578888887 453 44554443211 11111 1 1345 4455 57788888
Q ss_pred eecC
Q 043572 374 QKVP 377 (997)
Q Consensus 374 ~~~~ 377 (997)
.+..
T Consensus 292 ~~~~ 295 (299)
T 2z2n_A 292 TLIK 295 (299)
T ss_dssp EEC-
T ss_pred EcCc
Confidence 7643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=90.28 E-value=20 Score=37.70 Aligned_cols=169 Identities=9% Similarity=-0.064 Sum_probs=87.9
Q ss_pred EEEEEC-ceEEEEEEeCCeEEEEEeEecCC-cceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 197 FAVIIG-KRLVLIELVNGSFVILKEIQCMD-GVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 197 l~Va~k-kki~i~~~~~~~~~~~kei~~~~-~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
+.|++. ..|..|... +... ..+..+. .+.++... ++.|++|+ .+...+| .+|...--+.........+ ..
T Consensus 150 l~vgt~~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~--~~ 222 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GTEK--WRFKTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRP--AI 222 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEE--EEEECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCC--EE
T ss_pred EEEEcCCCEEEEECCC-CCEe--EEEecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceece--EE
Confidence 666665 556565544 3222 2222333 34556564 56799999 9999999 6675544444332111111 12
Q ss_pred CCCCeEEEEeC-CeEEEEccCCCcccccccc-CCCCCeEEEe-CcEEEEEECC-eEEEEecCCCceEEEEecCCCCCCCc
Q 043572 274 SKEQKVLLLVD-NVGVFVDAHGQPVGGSLVF-RKSPDAVGEL-SMYVVVLRGG-KMELYHKKSGICVQAVTFGGEGGGQC 349 (997)
Q Consensus 274 ~~~~e~Ll~~~-~~g~fv~~~G~~~r~~i~w-~~~P~~i~~~-~PYll~~~~~-~ieI~~~~~~~lvQ~i~~~~~~~~~~ 349 (997)
..++.+.+++. +....++.+|..... ..- ...+..+++. .-.|.+.+.+ .|..++. ++..+....++.... ..
T Consensus 223 ~~~g~l~v~t~~~gl~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~-~~ 299 (330)
T 3hxj_A 223 SEDGTIYVTSLDGHLYAINPDGTEKWR-FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWII-AT 299 (330)
T ss_dssp CTTSCEEEEETTTEEEEECTTSCEEEE-EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCC-SC
T ss_pred CCCCeEEEEcCCCeEEEECCCCCEeEE-eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccc-cc
Confidence 33446667764 444445766664321 110 1123334444 5566666654 7888885 788777777655322 22
Q ss_pred eecccccCCCcEEEEEcCCeEEEEeecCHH
Q 043572 350 IATDEECGAGKLLVVATPTKVICYQKVPSE 379 (997)
Q Consensus 350 i~~~~~~~~g~~~~v~s~~~V~~l~~~~~~ 379 (997)
++.+ ..|. +++++.+-+..+.+.+..
T Consensus 300 ~~~d---~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 300 PVID---ENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CEEC---TTCC-EEEECTTSCEEEEEC---
T ss_pred eEEc---CCCE-EEEEcCCCeEEEEecccc
Confidence 2221 1234 667776666666655443
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.25 E-value=0.12 Score=42.61 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+.. ++...||||.||..|+.... ...|| -...+...
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4566799999988875 44456999999999997642 45699 44455443
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=90.11 E-value=0.11 Score=46.65 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKK 985 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~ 985 (997)
+.+.-.|++|...+.. ++...||||.||..|+... ....|| -+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467789999888765 4545699999999999765 235699 4445443
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.13 Score=42.69 Aligned_cols=43 Identities=30% Similarity=0.450 Sum_probs=32.2
Q ss_pred EcCCCcCccccCccCCccEEEcC-CCeEEEeccccccC----cccCCCCC
Q 043572 937 INDESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQG----ESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~~----~~~~~t~~ 981 (997)
+.++-.|++|...+... ++.| |||.||..|+.... ...||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr 59 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPTCH 59 (74)
T ss_dssp SCGGGSCSSSCCCCTTC--EECSSSCCEECTTHHHHHHHHSSSSCCSSSC
T ss_pred CCCCCCCcCCChHHhCC--eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCC
Confidence 45667999998888753 3478 99999999998753 24799443
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.11 Score=47.29 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~ 981 (997)
++-.|++|...+...+ +.||||.||..|+.... ...||.++
T Consensus 14 ~~~~C~iC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 57 (115)
T 3l11_A 14 SECQCGICMEILVEPV--TLPCNHTLCKPCFQSTVEKASLCCPFCR 57 (115)
T ss_dssp HHHBCTTTCSBCSSCE--ECTTSCEECHHHHCCCCCTTTSBCTTTC
T ss_pred CCCCCccCCcccCcee--EcCCCCHHhHHHHHHHHhHCcCCCCCCC
Confidence 4568999998887543 34999999999998763 34799444
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.096 Score=40.76 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccCcccCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGRD 982 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~~~ 982 (997)
+.-.|++|...+... ++.||||.|+..|+... ...||.++.
T Consensus 5 ~~~~C~IC~~~~~~p--~~l~CgH~fC~~Ci~~~-~~~CP~Cr~ 45 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP--KLLPCLHTLCSGCLEAS-GMQCPICQA 45 (56)
T ss_dssp CCSSCSSSCSSCBCC--SCSTTSCCSBTTTCSSS-SSSCSSCCS
T ss_pred cCCCceEeCCccCCe--EEcCCCCcccHHHHccC-CCCCCcCCc
Confidence 456899999888764 35799999999999874 456995543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=89.82 E-value=24 Score=37.87 Aligned_cols=142 Identities=12% Similarity=0.076 Sum_probs=78.6
Q ss_pred EEEEE--CceEEEEEEeCCe-------EEEE---EeEe--cCCcceEEEEeC--CEEEEEE--CCcEEEEEecCCcceee
Q 043572 197 FAVII--GKRLVLIELVNGS-------FVIL---KEIQ--CMDGVKTMVWLN--DSIIVGT--VNGYSLFSCVTGQSGVI 258 (997)
Q Consensus 197 l~Va~--kkki~i~~~~~~~-------~~~~---kei~--~~~~~~~l~~~~--~~l~vg~--~~~y~lidl~~g~~~~l 258 (997)
++++. ..++.+|.+.... +... ..+. ....+..++|.. ..++++. .+...++|+.+|....+
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 44444 4678888887542 3322 2222 234578899884 3577776 45788999987765444
Q ss_pred ecCC---CCCCCCceEEcCCCCeEEEE-e-C--CeEEE--Ec-cCCCcccc-ccccCCCCCeEEEe--CcEEEEEE--CC
Q 043572 259 FTLP---DVSCPPMLKLLSKEQKVLLL-V-D--NVGVF--VD-AHGQPVGG-SLVFRKSPDAVGEL--SMYVVVLR--GG 323 (997)
Q Consensus 259 ~~~~---~~~~~p~i~~~~~~~e~Ll~-~-~--~~g~f--v~-~~G~~~r~-~i~w~~~P~~i~~~--~PYll~~~--~~ 323 (997)
.... .....|.-..+..++.+|.+ . + +.... ++ ..|....- .+.-...|..+++. .-||++.. .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 2221 11123434445445566644 2 2 33333 33 24553321 22224578888886 34787765 47
Q ss_pred eEEEEec--CCCceEEE
Q 043572 324 KMELYHK--KSGICVQA 338 (997)
Q Consensus 324 ~ieI~~~--~~~~lvQ~ 338 (997)
.|.|+.+ .++.+.+.
T Consensus 329 ~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 329 VIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEEECTTTCCEEEC
T ss_pred CEEEEEEECCCCcEeec
Confidence 8888654 46766543
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.12 Score=47.79 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=33.8
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKK 985 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~ 985 (997)
.+.-.|++|...+...+ ..||||.||..|+... ....|| -+..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPI--TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcE--EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34568999998887543 3599999999999764 233799 5566655
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=89.59 E-value=0.22 Score=48.92 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=41.7
Q ss_pred cEEEcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccC
Q 043572 934 HVQINDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 934 ~v~I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~ 990 (997)
...+.+.-.|++|+..+...+. .||||+|-..|..... ...|| |+..|...-++|
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~--~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCI--TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred ccCCcHhhcccCccccCCCCeE--CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 3456788899999988876443 4999999999987642 23599 999997766554
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.42 E-value=0.09 Score=46.54 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=39.4
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccCCCc
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIKPGW 993 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~~~~ 993 (997)
.+.-.|++|...+.. ++.+.||||.||..|+... ....|| -...|....+.+.+|
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 355689999998875 4444899999999999865 225799 455666655665554
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.077 Score=48.24 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=1.0
Q ss_pred CCCcCccccCccCCc----------------cEEEcCCCeEEEecccccc--CcccCCCC
Q 043572 939 DESLCDSCHARLGTK----------------LFAMYPDDTIVCYKCYRRQ--GESTSITG 980 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~----------------~f~v~p~g~~~H~~C~~~~--~~~~~~t~ 980 (997)
+...|++|...+... .++.-||||+||..|+..- ....||.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~C 106 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106 (117)
T ss_dssp CC----------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCC
Confidence 457899999888531 2334589999999999873 34679944
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=89.15 E-value=27 Score=37.62 Aligned_cols=192 Identities=13% Similarity=0.030 Sum_probs=104.5
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTG 166 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 166 (997)
+..+|..+..-|+...+.+ -+++.+.+|++........ ....|+..++...
T Consensus 18 h~~~V~~v~fs~dg~~la~-g~~~~~~iw~~~~~~~~~~-~~~~~~~~~~~~~--------------------------- 68 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLIL-STLKSFEIYNVHPVAHIMS-QEMRHLSKVRMLH--------------------------- 68 (355)
T ss_dssp -CCCCCEEEECTTSSEEEE-ECSSEEEEEEETTEEEEEE-EECSCCCEEEECT---------------------------
T ss_pred CCCceEEEEECCCCCEEEE-EcCCEEEEEecCCcceeee-eecCCeEEEEEcC---------------------------
Confidence 5678999999998885544 6677788998765432211 1111222222111
Q ss_pred chhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECCcE
Q 043572 167 QRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVNGY 245 (997)
Q Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~~y 245 (997)
++....+++. .++|.+|....++ .+.++..+..+.++.+..+.++++..+..
T Consensus 69 -------------------------~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~~~~~i 121 (355)
T 3vu4_A 69 -------------------------RTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIKVDAPVKDLFLSREFIVVSYGDVI 121 (355)
T ss_dssp -------------------------TSSEEEEECSSTTEEEEEETTTTE--EEEEEECSSCEEEEEECSSEEEEEETTEE
T ss_pred -------------------------CCCEEEEEECCccEEEEEECCCCc--EEEEEECCCceEEEEEcCCEEEEEEcCEE
Confidence 0111122222 3477887766553 34456677889999999999999999999
Q ss_pred EEEEecCC-cceeeecCCCCCCCCceEEcCCCCeEEEE---eCCeEEEEccC-CCcc---------------ccccccC-
Q 043572 246 SLFSCVTG-QSGVIFTLPDVSCPPMLKLLSKEQKVLLL---VDNVGVFVDAH-GQPV---------------GGSLVFR- 304 (997)
Q Consensus 246 ~lidl~~g-~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~---~~~~g~fv~~~-G~~~---------------r~~i~w~- 304 (997)
.++|+.++ .....+.. +..+..+.. ..+.++ .++...+.|.. |... ...+.-.
T Consensus 122 ~i~d~~~~~~~~~~~~~-----~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~ 195 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIR-----FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT 195 (355)
T ss_dssp EEEESSTTCCBSSCCEE-----EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred EEEECCCCceeeEEecc-----CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence 99999876 22111111 111222222 233332 22334444433 2100 0011111
Q ss_pred CCCCeEEEe--CcEEEEEE-CCe-EEEEecCCCceEEEEe
Q 043572 305 KSPDAVGEL--SMYVVVLR-GGK-MELYHKKSGICVQAVT 340 (997)
Q Consensus 305 ~~P~~i~~~--~PYll~~~-~~~-ieI~~~~~~~lvQ~i~ 340 (997)
.....+++. ..|++.-. ++. |.|.++.++..++++.
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 112334443 34676665 455 9999999999999987
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.79 E-value=0.073 Score=42.98 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.+...|++|...+...+. .||||+||..|+.... ...|| -+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3466789999988876444 6999999999998642 34699 55555443
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.17 Score=44.53 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKK 985 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~ 985 (997)
+.-.|++|...+.. +....||||.||..|.... ....|| -+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45689999988875 3434589999999999764 235699 4444543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=88.48 E-value=31 Score=37.41 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=42.9
Q ss_pred EEeecCCeEEEEc--CCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEE
Q 043572 36 PISDCQVLIYIGT--QSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLF 113 (997)
Q Consensus 36 ci~~~~~~l~iGT--~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~ 113 (997)
|+.-.|+.|++|| .+|.+..+....... ...++ ....|..+..-|+.. .|++-+++.+.
T Consensus 140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~--------------~~~~~----~~~~V~~v~fspdg~-~l~s~s~~~~~ 200 (365)
T 4h5i_A 140 YISREGTVAAIASSKVPAIMRIIDPSDLTE--------------KFEIE----TRGEVKDLHFSTDGK-VVAYITGSSLE 200 (365)
T ss_dssp EECTTSSCEEEEESCSSCEEEEEETTTTEE--------------EEEEE----CSSCCCEEEECTTSS-EEEEECSSCEE
T ss_pred EEcCCCCEEEEEECCCCCEEEEeECCCCcE--------------EEEeC----CCCceEEEEEccCCc-eEEeccceeEE
Confidence 3334467788876 579998887764321 11111 445799999889888 45547888888
Q ss_pred EeecCc
Q 043572 114 LTDSLL 119 (997)
Q Consensus 114 ~~~l~~ 119 (997)
+|....
T Consensus 201 ~~~~~~ 206 (365)
T 4h5i_A 201 VISTVT 206 (365)
T ss_dssp EEETTT
T ss_pred EEEecc
Confidence 887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.37 E-value=52 Score=39.89 Aligned_cols=179 Identities=9% Similarity=0.071 Sum_probs=92.2
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEe---c-CCcceEEEEeC-CEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCc
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQ---C-MDGVKTMVWLN-DSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPM 269 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~---~-~~~~~~l~~~~-~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~ 269 (997)
.+.|++...|..|....+.|....... + ...+.++.... +.|.+|+. .+...+|..++.........+. ....
T Consensus 462 ~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l-~~~~ 540 (781)
T 3v9f_A 462 KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGF-CSNT 540 (781)
T ss_dssp EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTC-SCSC
T ss_pred CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCC-CCCe
Confidence 578888877777766555565543221 1 23567776654 56999997 7888899876654443221111 1122
Q ss_pred eEEc--CCCCeEEEEeCCeEE-E-EccCCCcccc-ccc--cC-CCCCeEEEe-CcEEEEEECCeEEEEecCCCceEEEEe
Q 043572 270 LKLL--SKEQKVLLLVDNVGV-F-VDAHGQPVGG-SLV--FR-KSPDAVGEL-SMYVVVLRGGKMELYHKKSGICVQAVT 340 (997)
Q Consensus 270 i~~~--~~~~e~Ll~~~~~g~-f-v~~~G~~~r~-~i~--w~-~~P~~i~~~-~PYll~~~~~~ieI~~~~~~~lvQ~i~ 340 (997)
|..+ ..++.+.++++ .|+ + +|..+...+. +.. .+ ....++..+ .-.|.+-+.+.|..++..++. ++...
T Consensus 541 i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~-~~~~~ 618 (781)
T 3v9f_A 541 INQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKC-FYTYD 618 (781)
T ss_dssp EEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTE-EEEEC
T ss_pred eEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCc-eEEec
Confidence 3333 33457888877 455 3 4543332111 100 11 123344444 335555567778777776643 33333
Q ss_pred cCCCCC-CCcee-cccccCCCcEEEEEcCCeEEEEeecCH
Q 043572 341 FGGEGG-GQCIA-TDEECGAGKLLVVATPTKVICYQKVPS 378 (997)
Q Consensus 341 ~~~~~~-~~~i~-~~~~~~~g~~~~v~s~~~V~~l~~~~~ 378 (997)
...... ..+.. +.+...+|. +++++..-+..+.|..+
T Consensus 619 ~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~f~p~~~ 657 (781)
T 3v9f_A 619 HSNNIPQGSFISGCVTKDHNGL-IYFGSINGLCFFNPDIA 657 (781)
T ss_dssp GGGTCCSSCEEEEEEEECTTSC-EEEEETTEEEEECSCCG
T ss_pred ccCCccccccccCceEECCCCE-EEEECCCceEEEChhhc
Confidence 222111 11110 111112344 67788888888877544
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=88.06 E-value=0.12 Score=43.89 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC--------cccCCC-CCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG--------ESTSIT-GRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~--------~~~~~t-~~~f~~~ 986 (997)
+.+.-.|++|...+.... +.||||.||..|+.... ...||. ...+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456789999998887643 58999999999998631 456994 4444443
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=88.05 E-value=0.24 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=39.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
+.+.-.|++|+..+...+ +-||||.|...|.... ....|| |++.+...-+++
T Consensus 26 ~p~~~~CpI~~~~m~dPV--~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPV--RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp CSTTTBCTTTCSBCSSEE--EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred CcHhhCCcCccCcccCCe--ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 456789999998887643 3689999999998765 245799 999987765554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=20 Score=42.74 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.6
Q ss_pred CcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 89 SPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 89 ~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
.+|..+.+-|+ +.+++ -+|+++++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~-~~~~~i~~~d~~~ 110 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVL-FTQGGLVGFDMLA 110 (706)
T ss_dssp CCCEEEEETTT-TEEEE-EETTEEEEEETTT
T ss_pred cCceeEEECCC-CeEEE-EECCEEEEEECCC
Confidence 57999999999 87887 6889999999865
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=87.50 E-value=17 Score=37.81 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=85.7
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC--cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE-eCCeEEE
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL-VDNVGVF 289 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~-~~~~g~f 289 (997)
...++++.....+ +.+.+.++.|++++.. ....+|++||++..-+ .+.....--+...+ +.-|.+. .++.+..
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred eEEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence 3456777665555 7899999999999775 5888999999875544 43211111133332 3234443 4778888
Q ss_pred EccC-CCccccccccCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 290 VDAH-GQPVGGSLVFRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 290 v~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+|.. ++.. +++..+..+..++...-.+++-. .+.|.+++..+++.+.+|....
T Consensus 121 ~D~~Tl~~~-~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 121 WSGMPPQRE-RTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp EETTTTEEE-EEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EECCcCcEE-EEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 9964 4443 35666666778888887777654 6789999999999999998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=87.50 E-value=32 Score=36.50 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=47.4
Q ss_pred EEEEE--CceEEEEEEeC--CeEEEEEeEec-C------CcceEEEEeC--CEEEEEEC--CcEEEEEec-CCcceeeec
Q 043572 197 FAVII--GKRLVLIELVN--GSFVILKEIQC-M------DGVKTMVWLN--DSIIVGTV--NGYSLFSCV-TGQSGVIFT 260 (997)
Q Consensus 197 l~Va~--kkki~i~~~~~--~~~~~~kei~~-~------~~~~~l~~~~--~~l~vg~~--~~y~lidl~-~g~~~~l~~ 260 (997)
++|+. ...+.+|.+.. +.+.....+.. + ..+..++|.. ..|+++.. +...++|+. +|....+-.
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 44443 45788888874 46665555432 2 2367788873 45777653 568899986 333333322
Q ss_pred CCCCCCCCceEEcCCCCeEEEE
Q 043572 261 LPDVSCPPMLKLLSKEQKVLLL 282 (997)
Q Consensus 261 ~~~~~~~p~i~~~~~~~e~Ll~ 282 (997)
....+..|.-..++.++.+|++
T Consensus 281 ~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 281 ISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EECSSSCCCEEEECTTSSEEEE
T ss_pred EecCCCCcCeEEECCCCCEEEE
Confidence 2222234544455545555544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=87.31 E-value=3 Score=47.23 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=48.8
Q ss_pred eeeEEeec--CCeEEE----EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeeccc-CcEEE
Q 043572 33 SISPISDC--QVLIYI----GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDV-GKVLL 105 (997)
Q Consensus 33 ~I~ci~~~--~~~l~i----GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~-~~lLv 105 (997)
.|+|++.. ++.|++ |+.+|.+..|.+........... .. .......+ -...+|..+..-|.. +.++.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~--~~-~~~~~~~~---~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK--RP-FAYHKLLK---DAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC--CC-SEEEECCC---SGGGSEEEEEECSSCTTEEEE
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc--ce-eeeeeccC---CCCCceEEEEECCCCCCEEEE
Confidence 58888754 567884 78899999998854311000000 00 00011111 135689999999984 44444
Q ss_pred EecCCeEEEeecCcc
Q 043572 106 LFCDQCLFLTDSLLT 120 (997)
Q Consensus 106 ~l~d~~l~~~~l~~l 120 (997)
+-.||+|++|++..-
T Consensus 168 ~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 168 CLADGSIAVLQVTET 182 (434)
T ss_dssp EETTSCEEEEEESSS
T ss_pred EECCCeEEEEEcCCC
Confidence 456899999998764
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=87.16 E-value=0.21 Score=48.66 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=31.6
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccC---cccCCCCC-CC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSITGR-DF 983 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~t~~-~f 983 (997)
-.|++|...+.. ++..-||||.||..|+.... ...||.|+ .+
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999988875 45456999999999997652 45699544 44
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=86.99 E-value=53 Score=38.44 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=129.4
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. |+.|..|+.||.+..+....... .. ... ++ ....+|..+..-|+..++++ -+
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~----------~~-~~~-~~---~~~~~v~~v~fs~dg~~l~~-~~ 122 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH----------IL-KTT-IP---VFSGPVKDISWDSESKRIAA-VG 122 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC----------CE-EEE-EE---CSSSCEEEEEECTTSCEEEE-EE
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc----------ee-eEe-ec---ccCCceEEEEECCCCCEEEE-EE
Confidence 3568888754 67899999999999998753221 00 011 11 24568999999998885555 44
Q ss_pred C-----CeEEEeecCcccccccc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCc
Q 043572 109 D-----QCLFLTDSLLTQPLKKL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGV 182 (997)
Q Consensus 109 d-----~~l~~~~l~~l~~~~~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~ 182 (997)
+ +++.+|+... +...+ .-...|..++..+
T Consensus 123 ~~~~~~~~v~~wd~~~--~~~~l~gh~~~v~~v~f~p------------------------------------------- 157 (611)
T 1nr0_A 123 EGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKP------------------------------------------- 157 (611)
T ss_dssp CCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECS-------------------------------------------
T ss_pred CCCCceeEEEEeeCCC--CcceecCCCCCceEEEECC-------------------------------------------
Confidence 3 2677776432 11111 1122344444332
Q ss_pred cchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeC--CEEEEEE-CCcEEEEEecCCccee
Q 043572 183 KVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLN--DSIIVGT-VNGYSLFSCVTGQSGV 257 (997)
Q Consensus 183 ~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~--~~l~vg~-~~~y~lidl~~g~~~~ 257 (997)
++...++.+. .+.|.+|..... +..+.+.- .+.|.+++|.. ..|+.|. .+...+.|+.+|+...
T Consensus 158 ---------~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 158 ---------SRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp ---------SSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------CCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 1112344444 345777765433 33333322 34678999984 4466664 4578899998887655
Q ss_pred eecCC-----CCCCCCceEEcCCCCeEEEE--eCCeEEEEccC-CCccccccccC----CCCCeEEEeCcEEEEEE-CCe
Q 043572 258 IFTLP-----DVSCPPMLKLLSKEQKVLLL--VDNVGVFVDAH-GQPVGGSLVFR----KSPDAVGELSMYVVVLR-GGK 324 (997)
Q Consensus 258 l~~~~-----~~~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~~-G~~~r~~i~w~----~~P~~i~~~~PYll~~~-~~~ 324 (997)
.+... ...-......+.+++.+|++ .|+...+.|.. |...+ ++.-. .....+.+...++++.. ++.
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-eecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 55321 11111122334434455554 35566666653 43322 12111 12234455566777665 578
Q ss_pred EEEEecCCCceEEEE
Q 043572 325 MELYHKKSGICVQAV 339 (997)
Q Consensus 325 ieI~~~~~~~lvQ~i 339 (997)
+.+.+..++..++.+
T Consensus 306 i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 306 INFVNPELGSIDQVR 320 (611)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcceEE
Confidence 999998888766665
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=86.86 E-value=38 Score=37.48 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=44.5
Q ss_pred eeeeEEeec--CCeEEEEcCCc---eEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEE
Q 043572 32 LSISPISDC--QVLIYIGTQSG---SLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLL 106 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G---~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~ 106 (997)
..+.+++.. |+.|+.++.++ .|+.|.+..... ..+.. ....+..+..-|+...++++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------------~~l~~----~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------RQVAS----FPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------------EEEEC----CSSCEEEEEECTTSSEEEEE
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--------------EEeec----CCCcccCEEEcCCCCEEEEE
Confidence 466776653 56788887765 788777764321 11111 34478899989998867753
Q ss_pred ec-CC--eEEEeecCc
Q 043572 107 FC-DQ--CLFLTDSLL 119 (997)
Q Consensus 107 l~-d~--~l~~~~l~~ 119 (997)
.+ |+ .|++|++..
T Consensus 241 ~~~~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLAS 256 (415)
T ss_dssp ECTTSSCEEEEEETTT
T ss_pred EecCCCceEEEEECCC
Confidence 44 33 588888765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=86.73 E-value=29 Score=36.41 Aligned_cols=166 Identities=11% Similarity=0.018 Sum_probs=82.5
Q ss_pred EEEEE-CceEEEEEEeCCeEEEEEeEecCCc-ceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEE
Q 043572 197 FAVII-GKRLVLIELVNGSFVILKEIQCMDG-VKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKL 272 (997)
Q Consensus 197 l~Va~-kkki~i~~~~~~~~~~~kei~~~~~-~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~ 272 (997)
+.|++ ...+..|... +... .....+.. +.++... ++.|++|+. .+...+|.. |.....+..+......+ .
T Consensus 110 l~v~t~~~~l~~~d~~-g~~~--~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~--~ 183 (330)
T 3hxj_A 110 LYVTSMDGHLYAINTD-GTEK--WRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA--S 183 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEE--EEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC--E
T ss_pred EEEEecCCEEEEEcCC-CCEE--EEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeee--E
Confidence 55665 3445555443 2221 12222332 3455555 567999986 688889987 66544444432111111 1
Q ss_pred cCCCCeEEEEeCCeEEEEccCCCccccccccCCCCCeEEEeCc-EEEEEE-CCeEEEEecCCCceEEEEecCCCCCCCce
Q 043572 273 LSKEQKVLLLVDNVGVFVDAHGQPVGGSLVFRKSPDAVGELSM-YVVVLR-GGKMELYHKKSGICVQAVTFGGEGGGQCI 350 (997)
Q Consensus 273 ~~~~~e~Ll~~~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~~P-Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~~~~~~~i 350 (997)
...++.+.+++ +-...+|.+|......-.-...+..++...- .|.+.+ .+.|..++ .++..+..........+. +
T Consensus 184 ~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~-~ 260 (330)
T 3hxj_A 184 IGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESS-P 260 (330)
T ss_dssp ECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSC-C
T ss_pred EcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCcccc-c
Confidence 22344677777 5455567666543110000122344455433 566555 46777775 456666666554432111 2
Q ss_pred ecccccCCCcEEEEEcCC-eEEEEee
Q 043572 351 ATDEECGAGKLLVVATPT-KVICYQK 375 (997)
Q Consensus 351 ~~~~~~~~g~~~~v~s~~-~V~~l~~ 375 (997)
+.+ ..|. +++++.. .|+++.+
T Consensus 261 ~~~---~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 261 VIG---NTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEC---TTSC-EEEECTTCEEEEECT
T ss_pred eEc---CCCe-EEEecCCCCEEEECC
Confidence 211 1234 5666655 7888753
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=86.66 E-value=0.11 Score=43.52 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=36.0
Q ss_pred EcCCCcCccccCccCCccEEEcC--CCeEEEeccccccC---cccCC-CCCCCCCcc
Q 043572 937 INDESLCDSCHARLGTKLFAMYP--DDTIVCYKCYRRQG---ESTSI-TGRDFKKDV 987 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p--~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~ 987 (997)
+.++..|++|-.++.....+++| |||.|+..|+.... ...|| -.+.|...+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45678999999988644334466 99999999987652 45699 444555444
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=86.42 E-value=0.26 Score=42.06 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=39.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
+.+.-.|++|+..+...+ +-||||.|...|.... ....|| |++.+...-+++
T Consensus 11 ~p~~~~CpI~~~~m~dPV--~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPV--RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSSEE--ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CchheECcccCchhcCCe--ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 456789999998887643 4789999999998765 245799 999987765554
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=86.38 E-value=0.26 Score=44.89 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=33.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccCcccCC-CCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI-TGRDF 983 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~-t~~~f 983 (997)
+.-.|++|...+... +...||||.|+..|+.......|| -+..+
T Consensus 21 ~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred hCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcC
Confidence 457899999888653 333499999999999987666799 44444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=86.12 E-value=11 Score=39.28 Aligned_cols=125 Identities=11% Similarity=0.078 Sum_probs=86.0
Q ss_pred EEEEEeEecCCcc--eEEEEeCCEEEEEECC----cEEEEEecCCcceeeecCCCCCCCCceEEcCCCCeEEEE--eCCe
Q 043572 215 FVILKEIQCMDGV--KTMVWLNDSIIVGTVN----GYSLFSCVTGQSGVIFTLPDVSCPPMLKLLSKEQKVLLL--VDNV 286 (997)
Q Consensus 215 ~~~~kei~~~~~~--~~l~~~~~~l~vg~~~----~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~~~~e~Ll~--~~~~ 286 (997)
+..++++.....+ +.+.|.++.|++++.. ....+|+.||++..-++.+.....--+...+ + .+.+. .++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~-~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-D-KIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-T-EEEEEESSSSE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-C-EEEEEEeeCCE
Confidence 4566777666666 8899998899999753 6889999999887666654311111133332 3 54444 3788
Q ss_pred EEEEccC-CCccccccccCCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 287 GVFVDAH-GQPVGGSLVFRKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 287 g~fv~~~-G~~~r~~i~w~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
+..+|.. ++.. +++.....+..++...-.+++-. .+.|.+.+..+.+.+.+|+..
T Consensus 109 v~v~D~~t~~~~-~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~ 165 (262)
T 3nol_A 109 GFVWNIRNLRQV-RSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT 165 (262)
T ss_dssp EEEEETTTCCEE-EEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred EEEEECccCcEE-EEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence 8889974 4443 36666667778887776666543 567999999999999999884
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=85.98 E-value=34 Score=41.45 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=49.9
Q ss_pred EEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEe-CCEEEEEECCcEEEEEecCCcceeeecCCC--CCC-CCceE
Q 043572 196 VFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL-NDSIIVGTVNGYSLFSCVTGQSGVIFTLPD--VSC-PPMLK 271 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~-~~~l~vg~~~~y~lidl~~g~~~~l~~~~~--~~~-~p~i~ 271 (997)
.|.|++...+..|....+.+.....+. ...|.++... ++.|.+|+..+..++|..++.......... .+. ...|.
T Consensus 204 ~lWigt~~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 204 CVWIGTEGYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred EEEEEECCCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 366777555555554445565544332 2346777665 456999999999999987665544432221 111 12343
Q ss_pred Ec--CCCCeEEEEeCC
Q 043572 272 LL--SKEQKVLLLVDN 285 (997)
Q Consensus 272 ~~--~~~~e~Ll~~~~ 285 (997)
.+ +.++.+-++++.
T Consensus 283 ~i~~D~~g~lWiGT~~ 298 (758)
T 3ott_A 283 NIFADQEHNIWLGTDY 298 (758)
T ss_dssp EEEECTTCCEEEEESS
T ss_pred EEEEcCCCCEEEEeCC
Confidence 33 334467777654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.51 E-value=73 Score=38.60 Aligned_cols=175 Identities=13% Similarity=0.079 Sum_probs=81.1
Q ss_pred EEEEEE-CceEEEEEEeCCeEEEEEe-EecC-CcceEEEEe-CCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCce
Q 043572 196 VFAVII-GKRLVLIELVNGSFVILKE-IQCM-DGVKTMVWL-NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPML 270 (997)
Q Consensus 196 ~l~Va~-kkki~i~~~~~~~~~~~ke-i~~~-~~~~~l~~~-~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i 270 (997)
.+.|++ ...|..|....+.+..... -.++ ..|.++... ++.|.+|+. .+...+|..++........ ... ...+
T Consensus 375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-~~~-~~~v 452 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE-KNE-LLDV 452 (781)
T ss_dssp CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST-TTC-CCCE
T ss_pred CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC-CCC-CCeE
Confidence 367777 4556665543333333211 1122 356777665 467999986 7889999877765544321 111 1123
Q ss_pred EEc--CCCCeEEEEeCCeEEE-EccCC-Ccccc-ccc----cCCCCCeEEEeC-cEEEEEEC-CeEEEEecCCCceEEEE
Q 043572 271 KLL--SKEQKVLLLVDNVGVF-VDAHG-QPVGG-SLV----FRKSPDAVGELS-MYVVVLRG-GKMELYHKKSGICVQAV 339 (997)
Q Consensus 271 ~~~--~~~~e~Ll~~~~~g~f-v~~~G-~~~r~-~i~----w~~~P~~i~~~~-PYll~~~~-~~ieI~~~~~~~lvQ~i 339 (997)
..+ ..++.+.+++.+ |++ ++..+ ...+- ... ....+..+..+. -.|.+-+. +.|..++..++.. +.+
T Consensus 453 ~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~ 530 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGTHA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKF 530 (781)
T ss_dssp EEEEECTTSEEEEEETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEE
T ss_pred EEEEECCCCCEEEEECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEc
Confidence 332 334578888774 554 56543 32211 100 011122333322 12333333 5677777665533 333
Q ss_pred ecCCCCCCCceecccccCCCcEEEEEcCCeE-EEEee
Q 043572 340 TFGGEGGGQCIATDEECGAGKLLVVATPTKV-ICYQK 375 (997)
Q Consensus 340 ~~~~~~~~~~i~~~~~~~~g~~~~v~s~~~V-~~l~~ 375 (997)
..........+.+.+....|. +++++...+ +++.+
T Consensus 531 ~~~~~l~~~~i~~i~~d~~g~-lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 531 NQYEGFCSNTINQIYRSSKGQ-MWLATGEGLVCFPSA 566 (781)
T ss_dssp CTTTTCSCSCEEEEEECTTSC-EEEEETTEEEEESCT
T ss_pred cCCCCCCCCeeEEEEECCCCC-EEEEECCCceEEECC
Confidence 322211112222222122334 677776666 66544
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.16 E-value=0.25 Score=47.29 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.-.|++|...+...+ +.||||.||..|+.... ...|| ....+...
T Consensus 77 ~~~~C~IC~~~~~~pv--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV--TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE--ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE--EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4468999998887543 37999999999998652 23699 66666655
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=85.06 E-value=0.41 Score=42.02 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=40.1
Q ss_pred EcCCCcCccccCccCCccEEEcCCC-eEEEeccccccC--cccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDD-TIVCYKCYRRQG--ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g-~~~H~~C~~~~~--~~~~~-t~~~f~~~~~~~ 990 (997)
+.++-.|++|+..+...+ +-||| |.|...|..... ...|| |++.+...-+++
T Consensus 19 ~p~~~~CpI~~~~m~dPV--~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPV--VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CCTTTBCTTTCSBCSSEE--ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred CcHhcCCcCccccccCCe--ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 456789999998887643 47999 999999987652 45699 999988765554
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=84.88 E-value=0.24 Score=44.63 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccccCc-----ccCC-CCCCCCCcc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGE-----STSI-TGRDFKKDV 987 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~-----~~~~-t~~~f~~~~ 987 (997)
...|++|...+..... .||||.||..|+..... ..|| -+..+....
T Consensus 21 ~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeEE--CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3579999988865433 69999999999986522 3699 444454433
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=84.63 E-value=0.33 Score=38.46 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred CcCccccCccCCccEEEc-CCCeEEEeccccccC--cccCC-CCCCCCCccccC
Q 043572 941 SLCDSCHARLGTKLFAMY-PDDTIVCYKCYRRQG--ESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~-p~g~~~H~~C~~~~~--~~~~~-t~~~f~~~~~~~ 990 (997)
-.|++|++...+. ++- ++|++|-..|..+.. ...|| ||+.+...-+++
T Consensus 4 ~~CpIs~~~m~dP--V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRRP--VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSSE--EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCCC--EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 4799999999864 345 899999999998752 34599 999998877665
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=84.48 E-value=27 Score=39.14 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred EEE-EECceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEECC-cEEEEEecCCcce
Q 043572 197 FAV-IIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTVN-GYSLFSCVTGQSG 256 (997)
Q Consensus 197 l~V-a~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~-~y~lidl~~g~~~ 256 (997)
++. ...+.|.+|....+.. ..........+.+++|. |..|++|... ...++|++ +...
T Consensus 165 las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp EEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred EEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 443 3455688888876522 11222234578999998 4568888654 68888886 5433
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=84.05 E-value=53 Score=35.84 Aligned_cols=70 Identities=14% Similarity=0.025 Sum_probs=43.3
Q ss_pred cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecc-------cCcEEEEe-cCCe
Q 043572 40 CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDD-------VGKVLLLF-CDQC 111 (997)
Q Consensus 40 ~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~-------~~~lLv~l-~d~~ 111 (997)
.++.|.-|+.||.+..+......... .+....+. -+..+|..+..-|. .+++|++- .|++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~---------~~~~~~~~---gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIIT---------QHVLGGKS---GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEE---------EEEECTTT---SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccce---------eeeecccC---CCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 34568889999999999887543110 00111111 14568999998772 23355533 4789
Q ss_pred EEEeecCccc
Q 043572 112 LFLTDSLLTQ 121 (997)
Q Consensus 112 l~~~~l~~l~ 121 (997)
+++|++..-.
T Consensus 168 v~~Wd~~~~~ 177 (393)
T 4gq1_A 168 LIIWRLTDEG 177 (393)
T ss_dssp EEEEEEETTE
T ss_pred EEEEECCCCc
Confidence 9999986543
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.95 E-value=0.27 Score=42.56 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=34.4
Q ss_pred EEcCCCcCccccCccCCccEEEcC-CCeEEEecccccc----CcccCC-CCCCC
Q 043572 936 QINDESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQ----GESTSI-TGRDF 983 (997)
Q Consensus 936 ~I~~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~----~~~~~~-t~~~f 983 (997)
.+.+.-.|++|...+...+ ..| |||.|+..|+... ....|| .+..|
T Consensus 9 ~~~~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAV--VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCE--ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCce--ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3567789999998887543 469 9999999999764 234799 55555
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=83.85 E-value=0.42 Score=52.73 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCCCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSITGRD 982 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~~ 982 (997)
...|++|-..... -++.||||+||..|.... ....||.|+.
T Consensus 332 ~~~C~ICle~~~~--pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~ 375 (389)
T 2y1n_A 332 FQLCKICAENDKD--VKIEPCGHLMCTSCLTSWQESEGQGCPFCRC 375 (389)
T ss_dssp SSBCTTTSSSBCC--EEEETTCCEECHHHHHHHHHHTCSBCTTTCC
T ss_pred CCCCCccCcCCCC--eEEeCCCChhhHHHHHHHHhcCCCCCCCCCC
Confidence 4689999877754 456899999999999753 2467995553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=83.60 E-value=69 Score=36.79 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.8
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHH
Q 043572 587 LRTLAFLYASKGMSSKALAIWRVLAR 612 (997)
Q Consensus 587 ~~~L~~ly~~~~~~~~AL~il~~l~~ 612 (997)
+..|+.+|.+.|++++|++++.+...
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45688899999999999999988664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=83.34 E-value=60 Score=35.87 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCCcceEEEeecccCcEEEEecCC---eEEEeecCcc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQ---CLFLTDSLLT 120 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~---~l~~~~l~~l 120 (997)
+..+|..+..-|+.++++.+-.|+ .|++|++..-
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 456899999999988676633443 9999998653
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=83.29 E-value=0.18 Score=41.80 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCCcCccccCccCCccEEEcCCCeE-EEeccccccCcccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTI-VCYKCYRRQGESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~-~H~~C~~~~~~~~~~t~~ 981 (997)
++..|.+|...+... +..||||. ++..|.... ..||.++
T Consensus 23 ~~~~C~iC~~~~~~~--~~~pCgH~~~C~~C~~~~--~~CP~Cr 62 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI--VFVPCGHLVTCKQCAEAV--DKCPMCY 62 (74)
T ss_dssp HHTBCTTTSSSBCCE--EEETTCCBCCCHHHHTTC--SBCTTTC
T ss_pred cCCCCCCCCCCCCCE--EEcCCCChhHHHHhhhcC--ccCCCcC
Confidence 345899999887653 34699999 999999876 5699544
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=83.03 E-value=0.39 Score=43.75 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.9
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKD 986 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~ 986 (997)
+.+.-.|++|...+... +..||||.||..|+.... ...|| -+..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA--VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE--EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe--EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45667999999888764 346999999999997642 23799 55555444
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.69 E-value=0.36 Score=42.04 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=35.6
Q ss_pred CCCcCccccCccCCccEEEcC-CCeEEEeccccccC--------cccCC-CCCC---CCCccccC
Q 043572 939 DESLCDSCHARLGTKLFAMYP-DDTIVCYKCYRRQG--------ESTSI-TGRD---FKKDVLIK 990 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p-~g~~~H~~C~~~~~--------~~~~~-t~~~---f~~~~~~~ 990 (997)
++-.|++|...+... + +-| |||+|...|+.... ...|| ||.. +....+++
T Consensus 6 ~~~~CPI~~~~~~dP-V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SCCBCTTTCSBCSSE-E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred cEeECcCcCchhcCC-E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 456899999888763 3 355 99999999987652 23799 8876 55544443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.11 E-value=11 Score=43.88 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=50.0
Q ss_pred eeeeEEeec-CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEE-eecccC-cEEE-Ee
Q 043572 32 LSISPISDC-QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIF-VLDDVG-KVLL-LF 107 (997)
Q Consensus 32 ~~I~ci~~~-~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~-vl~~~~-~lLv-~l 107 (997)
..|+|++.. ++.|+.|+.||.+..|.+..... +...++ .+..+|..|. ..+..+ .+|+ +-
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~-------------~~~~~~---~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV-------------PSFYDQ---VHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSS-------------CSEEEE---CSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC-------------ceEEee---cccccEEEEEEEcCCCCCeEEEEec
Confidence 578898853 56899999999999999874321 111111 2567899985 445543 4555 34
Q ss_pred cCCeEEEeecCccc
Q 043572 108 CDQCLFLTDSLLTQ 121 (997)
Q Consensus 108 ~d~~l~~~~l~~l~ 121 (997)
.|+++.+|++....
T Consensus 331 ~D~tvklWD~~~~~ 344 (524)
T 2j04_B 331 VDGYFYIFNPKDIA 344 (524)
T ss_dssp TTSEEEEECGGGHH
T ss_pred cCCeEEEEECCCCC
Confidence 58899999987644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=82.05 E-value=64 Score=35.35 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 381 QIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 381 qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
....++..|++++|+.+++......+.. .......|..++..++|++|+..|.+
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4467889999999999998764322211 23444567778889999999999876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=82.01 E-value=83 Score=36.61 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=39.6
Q ss_pred EEEEEC--ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC--CcEEEEEecCCcceeeecC
Q 043572 197 FAVIIG--KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV--NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 197 l~Va~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~--~~y~lidl~~g~~~~l~~~ 261 (997)
++|..+ .+|.++.+.........++.....+..+.|.. ..++++.. +...++|+.++.....+++
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 444444 34666555443333445555555566777773 45777753 6788899888876666665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=81.71 E-value=47 Score=34.02 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=92.4
Q ss_pred EEEEEECc----eEEEEEEeCCeEEEEEeEecCCcc--eEEEEeCCEEEEEE--CCcEEEEEecCCcceeeecCCCCCCC
Q 043572 196 VFAVIIGK----RLVLIELVNGSFVILKEIQCMDGV--KTMVWLNDSIIVGT--VNGYSLFSCVTGQSGVIFTLPDVSCP 267 (997)
Q Consensus 196 ~l~Va~kk----ki~i~~~~~~~~~~~kei~~~~~~--~~l~~~~~~l~vg~--~~~y~lidl~~g~~~~l~~~~~~~~~ 267 (997)
++.+++.. +|..+....+ +..+++.++..+ -.++..++.|++++ .+.-.++|.+|++...-|+.+..
T Consensus 32 ~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~--- 106 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDLETG--RILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE--- 106 (243)
T ss_dssp EEEEEECCTTSCEEEEEETTTC--CEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC---
T ss_pred EEEEECCCCCCceEEEEECCCC--CEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC---
Confidence 46777665 5777766654 344566677665 56778899999997 56789999999888877887642
Q ss_pred CceEEcCCCCeEEEEe-CCeEEEEccCC-Ccccc-ccccCCC----CCeEEEeCcEEEEEE--CCeEEEEecCCCceEEE
Q 043572 268 PMLKLLSKEQKVLLLV-DNVGVFVDAHG-QPVGG-SLVFRKS----PDAVGELSMYVVVLR--GGKMELYHKKSGICVQA 338 (997)
Q Consensus 268 p~i~~~~~~~e~Ll~~-~~~g~fv~~~G-~~~r~-~i~w~~~----P~~i~~~~PYll~~~--~~~ieI~~~~~~~lvQ~ 338 (997)
+.-... +++.+.++. ++...|+|... ...+. ++.-... +..+.+..-.|++-. .+.|-|.+..+|..+.+
T Consensus 107 Gwglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 107 GWALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp CCEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred ceEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 222222 233444442 35677788753 33332 2322222 234556667777654 78999999999999999
Q ss_pred EecCC
Q 043572 339 VTFGG 343 (997)
Q Consensus 339 i~~~~ 343 (997)
|++.+
T Consensus 186 idl~~ 190 (243)
T 3mbr_X 186 IDLQA 190 (243)
T ss_dssp EECGG
T ss_pred EECCc
Confidence 99764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.69 E-value=36 Score=35.29 Aligned_cols=57 Identities=11% Similarity=-0.158 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhcHHHHHHHHHh
Q 043572 378 SEEQIKDLLRKKDFKEAISLAEELECEGEMAKEMLSFVHAQIGFLLLFDLHFEEAVDHFLH 438 (997)
Q Consensus 378 ~~~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~l~~i~~~~~~~lf~~~~f~~A~~~f~~ 438 (997)
+....+.++..|+|++|+.+++......+... ......|..++..+++++|..+|.+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----SCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----TTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34567888999999999999887643222111 1122244556778899999998876
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.61 E-value=47 Score=33.52 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.2
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL 119 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~ 119 (997)
....|..+..-|+...+++ -+++.|++|++..
T Consensus 40 ~~~~v~~~~~spdg~~l~~-~~~~~i~~~d~~~ 71 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLL-NSEGLLYRLSLAG 71 (297)
T ss_dssp ESSCCEEEEECTTSSEEEE-EETTEEEEEESSS
T ss_pred CCcceEeeEECCCCCEEEE-EcCCeEEEEeCCC
Confidence 3557999999999886666 7789999999866
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=81.45 E-value=88 Score=37.27 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=44.0
Q ss_pred EEEEEECceEEEEEEeCC---eEEEEEeEecCCcceEEEEe--CCEEEEEECCcEEEEEecCCcceeeecC
Q 043572 196 VFAVIIGKRLVLIELVNG---SFVILKEIQCMDGVKTMVWL--NDSIIVGTVNGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 196 ~l~Va~kkki~i~~~~~~---~~~~~kei~~~~~~~~l~~~--~~~l~vg~~~~y~lidl~~g~~~~l~~~ 261 (997)
.|+++....|.++....+ ....+.. ....+..+.|. |..|.++......++|+.+|....+...
T Consensus 122 ~l~~~~~~~i~~~d~~~~~~~~~~~l~~--~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 122 RLLFPLGGELYLYDLKQEGKAAVRQLTH--GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp EEEEEETTEEEEEESSSCSTTSCCBCCC--SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCC
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEccc--CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccC
Confidence 466667788888877665 3333221 23467888888 4568888888999999988876655443
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=81.07 E-value=0.42 Score=43.34 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccccccC---cccCC-CCCCCCCccccCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQG---ESTSI-TGRDFKKDVLIKP 991 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~---~~~~~-t~~~f~~~~~~~~ 991 (997)
++-.|++|...+...+ ..||||.||..|+.... ...|| -+..+....+++.
T Consensus 22 ~~~~C~IC~~~~~~p~--~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPV--ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEE--ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcE--EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 4568999998887533 37999999999997642 34699 6666665554443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=80.62 E-value=40 Score=34.11 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=32.9
Q ss_pred CceEEEEEEeC--CeEEEEEeEecCCcceEEEEeC--CEEEEEEC------------CcEEEEEecCCcceeeec
Q 043572 202 GKRLVLIELVN--GSFVILKEIQCMDGVKTMVWLN--DSIIVGTV------------NGYSLFSCVTGQSGVIFT 260 (997)
Q Consensus 202 kkki~i~~~~~--~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~------------~~y~lidl~~g~~~~l~~ 260 (997)
...+.+|.+.. +....+.. ....+..+.|.. ..|+++.. ....++|+.++....+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred CCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 45577777752 23332221 123456778873 45666643 347888988887666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=80.50 E-value=67 Score=34.52 Aligned_cols=148 Identities=10% Similarity=0.010 Sum_probs=81.9
Q ss_pred EEEEEE--CceEEEEEEe-CCeEEEEEeEecC---CcceEEEEeC--CEEEEEEC--CcEEEEEec--CCcce------e
Q 043572 196 VFAVII--GKRLVLIELV-NGSFVILKEIQCM---DGVKTMVWLN--DSIIVGTV--NGYSLFSCV--TGQSG------V 257 (997)
Q Consensus 196 ~l~Va~--kkki~i~~~~-~~~~~~~kei~~~---~~~~~l~~~~--~~l~vg~~--~~y~lidl~--~g~~~------~ 257 (997)
.++++- .++|.+|.+. .+++.....+..+ ..|..+.|.. ..++++.. +...+++++ +|... .
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 355553 3678899987 5666655555543 4588999884 45877764 466777765 45432 1
Q ss_pred eecCCCCC-C-------CCceEE-cCCCCeEEEEeC---------CeEEE-EccCCCcccc--cccc-CCCCCeEEEeC-
Q 043572 258 IFTLPDVS-C-------PPMLKL-LSKEQKVLLLVD---------NVGVF-VDAHGQPVGG--SLVF-RKSPDAVGELS- 314 (997)
Q Consensus 258 l~~~~~~~-~-------~p~i~~-~~~~~e~Ll~~~---------~~g~f-v~~~G~~~r~--~i~w-~~~P~~i~~~~- 314 (997)
.++.+..+ . .|.-.. ++.++.+|.+.+ .+.+| ++.+|...+- .+.+ ...|..+++..
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 23322111 1 243344 554556665432 24444 3445664431 1332 23577776653
Q ss_pred ----cEEEEEE--CCeEEEEecCCCce--EEEEecCC
Q 043572 315 ----MYVVVLR--GGKMELYHKKSGIC--VQAVTFGG 343 (997)
Q Consensus 315 ----PYll~~~--~~~ieI~~~~~~~l--vQ~i~~~~ 343 (997)
-||++.. .+.|.|+.+....+ +..++++.
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~~~ 354 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE 354 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCS
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchhhCceeeEEEcCC
Confidence 5887775 37899998876533 34455544
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.27 E-value=0.52 Score=43.65 Aligned_cols=51 Identities=14% Similarity=0.334 Sum_probs=37.5
Q ss_pred cCCCcCccccCccCC-----ccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccc
Q 043572 938 NDESLCDSCHARLGT-----KLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVL 988 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~-----~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~ 988 (997)
.++..|++|...+.. ...+..||||+||..|.... ....|| -++.|.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 356789999988754 23577899999999999765 345799 6666655443
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.03 E-value=1 Score=37.06 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.5
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEecccccc----CcccCC-CCCCC
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ----GESTSI-TGRDF 983 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~----~~~~~~-t~~~f 983 (997)
+.-..|++|...+.... ..-.|+|.||.+|+.+. ....|| =+.+|
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 34578999999887532 22378999999999854 236799 33444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 997 | ||||
| d1b89a_ | 336 | a.118.1.3 (A:) Clathrin heavy chain proximal leg s | 7e-12 |
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (160), Expect = 7e-12
Identities = 42/361 (11%), Positives = 94/361 (26%), Gaps = 81/361 (22%)
Query: 558 RVHDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSG 617
R+ ++E N+ ++++ + LY + + + L Y
Sbjct: 1 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL-GEY--- 56
Query: 618 LWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKV 677
A +++ + D ++
Sbjct: 57 --------------------------QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 90
Query: 678 LTSEKRI-NQLSPDKVIAAIDSKKVEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIE 736
+ + + D E L L+ + + T A+ +K +
Sbjct: 91 CGLHIVVHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFKPQ 149
Query: 737 AFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSE 796
+ + + VL E +
Sbjct: 150 ----------------------------------KMREHLELFWSRVNIPKVLRAAEQAH 175
Query: 797 LWLEKAILYRKLGQETLVLQILALKLEDSEAAEQY---CAEIGRPDAYMQLLDMYLDSQD 853
LW E LY K + + + D+ Q+ ++ + Y + + YL+ +
Sbjct: 176 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK- 234
Query: 854 GKEPMFKAAVRLLHNHGESLDPLQVLETLSPDMPLQLASDTILRMLRARLHHHRQGQIVH 913
P+ LL LD + + S L L + LR+ +H+ + V+
Sbjct: 235 ---PLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPL----VKPYLRSVQNHNN--KSVN 283
Query: 914 N 914
Sbjct: 284 E 284
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 997 | |||
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 99.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.68 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.47 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.42 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.41 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.26 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.04 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.82 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.82 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.52 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.22 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 96.06 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.89 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 95.78 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.68 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.66 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.62 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.54 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.13 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.09 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 94.97 | |
| d1rutx3 | 31 | LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10 | 94.83 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 94.79 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 94.55 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.38 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 94.27 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.24 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 94.21 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.67 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 93.41 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 93.19 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 93.0 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 92.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 92.38 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 91.71 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 91.55 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 91.04 | |
| d2dloa1 | 35 | Thyroid receptor interacting protein 6, TRIP6 {Hum | 90.53 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 90.49 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 89.75 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 89.01 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 88.03 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 87.78 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 85.45 | |
| d2d8ya1 | 35 | Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]} | 84.54 | |
| d1rutx1 | 30 | LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10 | 82.84 | |
| d2cs3a1 | 80 | Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ | 82.58 | |
| d2co8a2 | 36 | Nedd9 interacting protein with calponin homology, | 82.53 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 80.78 |
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.83 E-value=1.3e-20 Score=205.50 Aligned_cols=269 Identities=14% Similarity=0.130 Sum_probs=203.3
Q ss_pred hhhhcccCCCCcccHHHHHHHHHHcCChhHHHHHHhhcCChHHHHHHHHHHHHhcCCCCCCCCcccccccccccccccch
Q 043572 560 HDMENLAPSENSCIVEELETLLDESGHLRTLAFLYASKGMSSKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGR 639 (997)
Q Consensus 560 ~~l~~ll~~~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~ 639 (997)
.++.+|++.+|++|++++.+.|.+.|.|++++.+|...+++++++.+|.++.+.
T Consensus 3 ~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~-------------------------- 56 (336)
T d1b89a_ 3 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY-------------------------- 56 (336)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCH--------------------------
T ss_pred hhHHHHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccH--------------------------
Confidence 578899999999999999999999999999999999999999999999875431
Q ss_pred hhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhcccccccCCCChhHHHHHh----hccChHHHHHHHHHHHhcC
Q 043572 640 EVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTSEKRINQLSPDKVIAAI----DSKKVEILQRYLQWLIEDQ 715 (997)
Q Consensus 640 ~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~~~~~~~l~~~~Vl~~L----~~~~~~~~~~YLE~li~~~ 715 (997)
+ .+++++.+....+++++...++++.++....++... ...+.++.+.+.+ .....+.++.|||..+. .
T Consensus 57 ~----~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~-~ 128 (336)
T d1b89a_ 57 Q----AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL---HIVVHADELEELINYYQDRGYFEELITMLEAALG-L 128 (336)
T ss_dssp H----HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S
T ss_pred H----HHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-C
Confidence 1 123444444577889999999999988776555432 1234555554332 22345788999999875 3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCCCCCCcccHHHHHHHHHHhhc-CCCCChHHHHhhccC
Q 043572 716 DSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGYGKNSIFQCPVQERLQIFLQS-SDLYDPEDVLDLIEG 794 (997)
Q Consensus 716 ~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~yd~~~~L~~~~~ 794 (997)
...+..+||.|+.+|. ++.+.|+++||+. |+.||++++++.|..
T Consensus 129 ~~~~~~~~~~L~~lya-----------------------------------k~~~~kl~e~l~~~s~~y~~~k~~~~c~~ 173 (336)
T d1b89a_ 129 ERAHMGMFTELAILYS-----------------------------------KFKPQKMREHLELFWSRVNIPKVLRAAEQ 173 (336)
T ss_dssp TTCCHHHHHHHHHHHH-----------------------------------TTCHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHH-----------------------------------HhChHHHHHHHHhccccCCHHHHHHHHHH
Confidence 4567899999999883 3568899999998 899999999999999
Q ss_pred CCchHHHHHHHHhhcchHHHHHHHHHhcCCH---HHHHHHHhhcCCchHHHHHHHHhcCCCCCCchhHHHHHHHHHhccC
Q 043572 795 SELWLEKAILYRKLGQETLVLQILALKLEDS---EAAEQYCAEIGRPDAYMQLLDMYLDSQDGKEPMFKAAVRLLHNHGE 871 (997)
Q Consensus 795 ~~l~~e~~~Ll~klg~h~eAL~il~~~l~D~---~~Ae~yC~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~lL~~~~~ 871 (997)
.++++|.++||+++|+|++|+.+++....|. +...+++.+..++++|..++..|+.. +|.+ +.++|...++
T Consensus 174 ~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~--i~~lL~~v~~ 247 (336)
T d1b89a_ 174 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLL--LNDLLMVLSP 247 (336)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGG--HHHHHHHHGG
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHH--HHHHHHHhcc
Confidence 9999999999999999999999999887765 44455577888999999999999963 2544 8888888889
Q ss_pred CCCHHHHhhhCCCCcchhhhHHHHHHHHHHHH
Q 043572 872 SLDPLQVLETLSPDMPLQLASDTILRMLRARL 903 (997)
Q Consensus 872 ~ld~~~VL~~lP~~~~i~~l~~fL~~~l~~~~ 903 (997)
.+|+..+++.++....+..+++||..+...+.
T Consensus 248 ~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~ 279 (336)
T d1b89a_ 248 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 279 (336)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhcCCcHHHHHHHHHHHHcCh
Confidence 99999999999999999999999998766443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.68 E-value=1.2e-07 Score=101.86 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCchhhhcccCC-CCcccHHHHHHHHHHcCChhHHHHHHhhcCCh
Q 043572 522 IRNITRYLEVSRKKELTILVKEGVDTLLMYLYRALNRVHDMENLAPS-ENSCIVEELETLLDESGHLRTLAFLYASKGMS 600 (997)
Q Consensus 522 ~~~L~~yL~~~r~~~~~~~~~~~vDT~Ll~~y~~~~~~~~l~~ll~~-~n~c~~e~~~~~L~~~~~~~~L~~ly~~~~~~ 600 (997)
...|..||+..-.... ....+-|-|+.+|+++++ ..+.++++. .+..+++.+..++.+++.|.+++.||.+.|+|
T Consensus 115 ~e~Li~~Le~~~~~~~---~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~ 190 (336)
T d1b89a_ 115 FEELITMLEAALGLER---AHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 190 (336)
T ss_dssp HHHHHHHHHHHTTSTT---CCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHcCCc---cchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCH
Confidence 3456666664311111 123456778899999987 567777765 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccccccccccccchhhhHHHHHHhcCCCCCHHHHHHHHhhhhccCchhhhhhccc
Q 043572 601 SKALAIWRVLARNYSSGLWKDPAVENDLLDGCADVMSGREVAATEASKILEESSDEDLILQHLGWIADINAVLAVKVLTS 680 (997)
Q Consensus 601 ~~AL~il~~l~~~~~~~~~~d~~~~~~l~~~~~~~l~~~~~~~~~~~~~L~~~~~~~li~~~~~wll~~~p~~~l~if~~ 680 (997)
++|+.++..-... .|. ...+.+...+..+.+++++-+.|.++..|+..-.++..
T Consensus 191 ~~A~~~~i~~~~~----~~~----------------------~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~ 244 (336)
T d1b89a_ 191 DNAIITMMNHPTD----AWK----------------------EGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMV 244 (336)
T ss_dssp HHHHHHHHHSTTT----TCC----------------------HHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHcchh----hhh----------------------HHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999988862210 010 01233344445577899999999999999876666654
Q ss_pred ccccCCCChhHHHHHhhccC-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhhcCccccCCcCCccccCCC
Q 043572 681 EKRINQLSPDKVIAAIDSKK-VEILQRYLQWLIEDQDSDDTQFHTLYALSLAKSAIEAFEEESGSKAFGTQMGETRSSGY 759 (997)
Q Consensus 681 ~~~~~~l~~~~Vl~~L~~~~-~~~~~~YLE~li~~~~~~~~~~h~~L~~lyi~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 759 (997)
- ...+|+.++++.+.+.+ -.+...|||.+... ..+.+|+.|..+||+.
T Consensus 245 v--~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~---n~~~vn~al~~lyie~-------------------------- 293 (336)
T d1b89a_ 245 L--SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITE-------------------------- 293 (336)
T ss_dssp H--GGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHT--------------------------
T ss_pred h--ccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc---ChHHHHHHHHHHHhCc--------------------------
Confidence 2 35799999999887643 35788999997542 3478999999999752
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCChHHHHhhccCCCchHH
Q 043572 760 GKNSIFQCPVQERLQIFLQSSDLYDPEDVLDLIEGSELWLE 800 (997)
Q Consensus 760 ~~~~~~~~~~r~kL~~fL~~s~~yd~~~~L~~~~~~~l~~e 800 (997)
...+.|..+++.-.+||.-.+-.+|+.+++.+=
T Consensus 294 --------~d~~~l~~~i~~~~~fd~~~l~~~le~h~~~~~ 326 (336)
T d1b89a_ 294 --------EDYQALRTSIDAYDNFDNISLAQRLEKHELIEF 326 (336)
T ss_dssp --------TCHHHHHHHHHHCCCSCHHHHHHHHTTCSSHHH
T ss_pred --------chhHHHHHHHHHhcccCHHHHHHHHhhCcchHH
Confidence 235679999999999999999999999988654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.0031 Score=66.47 Aligned_cols=242 Identities=10% Similarity=0.040 Sum_probs=134.3
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+ +|.+..|.+....... ........ -...+|..|...|+.+.++++-.|
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--------~~~~~~~~----~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--------PVSQLDCL----NRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--------CSEEEECS----CTTSBEEEEEECTTSSEEEEEESS
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--------eeEEeeec----CCCCcEEEEEEcCCCCEEEEeecc
Confidence 578888764 55788887 8999999887644210 01111111 145689999999998877766678
Q ss_pred CeEEEeecCcccccc--cc-ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 110 QCLFLTDSLLTQPLK--KL-GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~--~~-~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
|+|.+|++....+.. .+ .....+..++.++
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------------------------- 151 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISP----------------------------------------------- 151 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECT-----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-----------------------------------------------
Confidence 999999987643321 11 0111222222211
Q ss_pred cccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCC
Q 043572 187 EEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLP 262 (997)
Q Consensus 187 ~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~ 262 (997)
++ ..++.+.. ..+.++.+..+...... ....+.+.+++|. +..+++|.. +...++|+.+++....+...
T Consensus 152 -----~~-~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~ 224 (337)
T d1gxra_ 152 -----DS-KVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp -----TS-SEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred -----cc-cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccccc
Confidence 11 22344443 45777777655433221 1134567888886 346777765 45678899888765555443
Q ss_pred CCCCCCceEEcCCCCeEEE-Ee-CCeEEEEccCCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEecCCCceEE
Q 043572 263 DVSCPPMLKLLSKEQKVLL-LV-DNVGVFVDAHGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQ 337 (997)
Q Consensus 263 ~~~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ 337 (997)
+ ......+..++.+++ +. ++...+.+...........-......+.+. ..++++.. ++.|.|+++.++..++
T Consensus 225 ~---~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~ 301 (337)
T d1gxra_ 225 S---QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp S---CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred c---ceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 2 111222333334444 33 344444554322111011112223344443 34777665 5789999999999998
Q ss_pred EEecCC
Q 043572 338 AVTFGG 343 (997)
Q Consensus 338 ~i~~~~ 343 (997)
++....
T Consensus 302 ~~~~~~ 307 (337)
T d1gxra_ 302 QSKESS 307 (337)
T ss_dssp EEECSS
T ss_pred EccCCC
Confidence 877554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.015 Score=60.80 Aligned_cols=225 Identities=12% Similarity=0.041 Sum_probs=124.1
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.+|.+..|.+...... ....++ .....|..+..-|+...++.+-.|
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 162 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------------IKAELT---SSAPACYALAISPDSKVCFSCCSD 162 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------------EEEEEE---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEeecccccccccccccccc------------cccccc---cccccccccccccccccccccccc
Confidence 458898864 567999999999999988654320 011111 245678888888887755554456
Q ss_pred CeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+.+.+|++..-++..... ....++.++..+
T Consensus 163 ~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~------------------------------------------------- 193 (337)
T d1gxra_ 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISN------------------------------------------------- 193 (337)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECT-------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-------------------------------------------------
Confidence 799999987654332211 122333333221
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeeecCCCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDV 264 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~ 264 (997)
++ ..++++. .+.+.+|....+ ..++.+...+.+.+++|. ++.+++|.. ....++|+.++..........
T Consensus 194 ---~~-~~~~~~~~d~~v~i~d~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~- 266 (337)
T d1gxra_ 194 ---DG-TKLWTGGLDNTVRSWDLREG--RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES- 266 (337)
T ss_dssp ---TS-SEEEEEETTSEEEEEETTTT--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS-
T ss_pred ---cc-cccccccccccccccccccc--eeecccccccceEEEEEcccccccceecccccccccccccccccccccccc-
Confidence 11 2344444 456778777654 344555677889999987 445777755 568889988766543332211
Q ss_pred CCCCceEEcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCCCCCeEEEe--CcEEEEEE-CCeEEEEec
Q 043572 265 SCPPMLKLLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKSPDAVGEL--SMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 265 ~~~p~i~~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~--~PYll~~~-~~~ieI~~~ 330 (997)
.-.-..+..++.+|++ .|+...+.|. .|.+.. .+.=......+.+. ..||++-+ ++.|.|.++
T Consensus 267 --~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 267 --CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred --ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-EccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 1111223334455544 3455555554 344432 11112223344443 24666554 356766653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.42 E-value=0.021 Score=59.25 Aligned_cols=229 Identities=9% Similarity=-0.011 Sum_probs=128.5
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++. .|+.|+.|+.||.+..|........ . ...+ + ....+|..|..-|+...+++ .+
T Consensus 58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~----------~-~~~~-~---~~~~~v~~v~~s~d~~~l~~-~~ 121 (311)
T d1nr0a1 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI----------L-KTTI-P---VFSGPVKDISWDSESKRIAA-VG 121 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC----------E-EEEE-E---CSSSCEEEEEECTTSCEEEE-EE
T ss_pred CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc----------c-cccc-c---cccCcccccccccccccccc-cc
Confidence 468999986 3678999999999999988764320 0 0111 1 24668999999998885555 44
Q ss_pred C---CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 109 D---QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 109 d---~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
+ +.+.+|++..-++..++.. ...++.++.++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~--------------------------------------------- 156 (311)
T d1nr0a1 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP--------------------------------------------- 156 (311)
T ss_dssp CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS---------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc---------------------------------------------
Confidence 3 3588998877555443321 22344444322
Q ss_pred hhcccccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEec-CCcceEEEEe--CCEEEEEEC-CcEEEEEecCCcceeee
Q 043572 185 KEEEQHCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQC-MDGVKTMVWL--NDSIIVGTV-NGYSLFSCVTGQSGVIF 259 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~-~~~~~~l~~~--~~~l~vg~~-~~y~lidl~~g~~~~l~ 259 (997)
++...++.+.. ..|.+|.+...+. ...+.. ...+.++.|. ++.++.|.. ....++|+.++.....+
T Consensus 157 -------~~~~~l~sgs~d~~i~i~d~~~~~~--~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 227 (311)
T d1nr0a1 157 -------SRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227 (311)
T ss_dssp -------SSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred -------cceeeeccccccccccccccccccc--ccccccccccccccccCccccccccccccccccccccccccccccc
Confidence 11223443443 4577877665432 222222 3467899997 455777754 67888999888766655
Q ss_pred cCCCCC---CCCceE--EcCCCCeEEEE--eCCeEEEEcc-CCCccccccccCC----CCCeEEEeCcEEEEEE-CCeEE
Q 043572 260 TLPDVS---CPPMLK--LLSKEQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRK----SPDAVGELSMYVVVLR-GGKME 326 (997)
Q Consensus 260 ~~~~~~---~~p~i~--~~~~~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~----~P~~i~~~~PYll~~~-~~~ie 326 (997)
...... ....|. .+..++.+|++ .|+...+.|. +|+..+ ++.-.. ....+.+...++++.. ++.|.
T Consensus 228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~-~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~ 306 (311)
T d1nr0a1 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306 (311)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEE-EEECCCCccceEEEEEecCCEEEEEECCCEEE
Confidence 543211 111222 23333455554 3455555564 444432 222211 1224455566776554 45666
Q ss_pred EEec
Q 043572 327 LYHK 330 (997)
Q Consensus 327 I~~~ 330 (997)
+.++
T Consensus 307 ~wd~ 310 (311)
T d1nr0a1 307 FVNP 310 (311)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.41 E-value=0.052 Score=54.99 Aligned_cols=234 Identities=9% Similarity=0.075 Sum_probs=129.7
Q ss_pred eeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec
Q 043572 31 SLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC 108 (997)
Q Consensus 31 ~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~ 108 (997)
...|+|++.. ++.|+-|+.||.+..|.+..... ...+.+ ....+|..+...|+.. ++++-.
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-------------~~~~~~---~h~~~v~~v~~~~~g~-~~~~~~ 74 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGIS-------------NRVFPD---VHATMITGIKTTSKGD-LFTVSW 74 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EECSSC---SCSSCEEEEEECTTSC-EEEEET
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEEcC---CCCCcEEEEEeeccce-eecccc
Confidence 3568898864 56799999999999998764321 011111 2456899999888866 666688
Q ss_pred CCeEEEeecCccccccc--c--ccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccc
Q 043572 109 DQCLFLTDSLLTQPLKK--L--GFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKV 184 (997)
Q Consensus 109 d~~l~~~~l~~l~~~~~--~--~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~ 184 (997)
|+++.+|++..-..... . .....+..++..+
T Consensus 75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--------------------------------------------- 109 (299)
T d1nr0a2 75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA--------------------------------------------- 109 (299)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT---------------------------------------------
T ss_pred eeeEEEeccCCcccccccccccccccccccccccc---------------------------------------------
Confidence 99999998754221100 0 0001111111110
Q ss_pred hhcccccCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 185 KEEEQHCRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 185 ~~~~~~~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..+++...+.+.+|. .++. .+......+.+++|.. +.+++|.. ....++|++++....+...
T Consensus 110 -------~g-~~~~~~~~~~i~~~~--~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~ 176 (299)
T d1nr0a2 110 -------DG-DIAVAACYKHIAIYS--HGKL---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176 (299)
T ss_dssp -------TS-SCEEEEESSEEEEEE--TTEE---EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred -------cc-ccccccccccccccc--cccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 235566677777664 3222 2233455667777764 45888765 5688899987765444322
Q ss_pred CCCCCCCceEEcCCCCeEEEEe--CCeEEEEcc-CCCcccc--ccccCCCC-CeEEEe--CcEEEEEE-CCeEEEEecCC
Q 043572 262 PDVSCPPMLKLLSKEQKVLLLV--DNVGVFVDA-HGQPVGG--SLVFRKSP-DAVGEL--SMYVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 262 ~~~~~~p~i~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~--~i~w~~~P-~~i~~~--~PYll~~~-~~~ieI~~~~~ 332 (997)
.. ........+..++.+|++. ++...+.+. .|..... ++.....| ..+++. .+|+++-. ++.|.|.++.+
T Consensus 177 ~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 177 VH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp EC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence 11 1111223333344555543 345555654 3433322 23332233 344443 45777655 57899999988
Q ss_pred CceEEEEe
Q 043572 333 GICVQAVT 340 (997)
Q Consensus 333 ~~lvQ~i~ 340 (997)
+...+.+.
T Consensus 256 ~~~~~~~~ 263 (299)
T d1nr0a2 256 PSDHPIII 263 (299)
T ss_dssp TTSCCEEE
T ss_pred CCcceEEE
Confidence 76555443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.016 Score=61.63 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=91.4
Q ss_pred eeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 34 ISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 34 I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
|+|++.. ++.|++|+.+|.+..|....... .....++ -.+.+|..|..-|+.+.++.+-.|++
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~------------~~~~~l~---gH~~~V~~l~fsp~~~~l~s~s~D~~ 74 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELK---EHNGQVTGVDWAPDSNRIVTCGTDRN 74 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEE---CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCE------------EEEEEec---CCCCCEEEEEECCCCCEEEEEECCCe
Confidence 7888753 56888999999999998864321 0111112 15679999999999886666556889
Q ss_pred EEEeecCcccccc--ccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 112 LFLTDSLLTQPLK--KLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 112 l~~~~l~~l~~~~--~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++|++..-...+ ... ...+++.++..+
T Consensus 75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p------------------------------------------------- 105 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILRINRAARCVRWAP------------------------------------------------- 105 (371)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECT-------------------------------------------------
T ss_pred EEEEeeccccccccccccccccccccccccc-------------------------------------------------
Confidence 9999986533211 111 123344444322
Q ss_pred cccCCceEEEEEEC-ceEEEEEEeCCe-EEEEEeEe--cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCc
Q 043572 189 QHCRGDNVFAVIIG-KRLVLIELVNGS-FVILKEIQ--CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQ 254 (997)
Q Consensus 189 ~~~~~~~~l~Va~k-kki~i~~~~~~~-~~~~kei~--~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~ 254 (997)
++ ..++++.. +.+.++.+.... ........ ....+.++.|.. ..|+.|.. ....++|+..+.
T Consensus 106 ---~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 106 ---NE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp ---TS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred ---cc-ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence 11 23444444 457888876542 22222211 235678999974 45666654 567777876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.24 Score=51.78 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=126.6
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCcccccccccc--ccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTV--SVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..|+|++.. |+.|..|+ ||.+..|.+.....-............ ....... ......|..|..-|+.+.++.+-
T Consensus 63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc-ccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 468899864 55788886 899999988654310000000000000 0000000 02456799999989888666666
Q ss_pred cCCeEEEeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchh
Q 043572 108 CDQCLFLTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKE 186 (997)
Q Consensus 108 ~d~~l~~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~ 186 (997)
.||++.+|+...-+...... -...+..++..+
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~----------------------------------------------- 173 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP----------------------------------------------- 173 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-----------------------------------------------
Confidence 78999999987654332211 112233333211
Q ss_pred cccccCCceEEEEE-ECceEEEEEEeCCeEEEEEeEecCCcceEEEEe---CCEEEEEEC-CcEEEEEecCCcceeeecC
Q 043572 187 EEQHCRGDNVFAVI-IGKRLVLIELVNGSFVILKEIQCMDGVKTMVWL---NDSIIVGTV-NGYSLFSCVTGQSGVIFTL 261 (997)
Q Consensus 187 ~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~---~~~l~vg~~-~~y~lidl~~g~~~~l~~~ 261 (997)
++ ..++++ ....+.++....... .......+...++.+. ++.|+.|.. +...++|+.++....-+..
T Consensus 174 -----~~-~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 245 (388)
T d1erja_ 174 -----SG-DKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245 (388)
T ss_dssp -----TS-SEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred -----cc-ccccccccceeeeeeecccccc--ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc
Confidence 11 123333 334566665554322 2223344455555555 345776754 5688889887765544433
Q ss_pred CCC---CCCCce--EEcCCCCeEEE-Ee-CCeEEEEccC-CCccc-------c----ccccC-CCCCeEEEe--CcEEEE
Q 043572 262 PDV---SCPPML--KLLSKEQKVLL-LV-DNVGVFVDAH-GQPVG-------G----SLVFR-KSPDAVGEL--SMYVVV 319 (997)
Q Consensus 262 ~~~---~~~p~i--~~~~~~~e~Ll-~~-~~~g~fv~~~-G~~~r-------~----~i~w~-~~P~~i~~~--~PYll~ 319 (997)
... +....| ..+..++.+|+ +. |+...+.+.. |.... + ...+. .....+++. ..||++
T Consensus 246 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 325 (388)
T d1erja_ 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325 (388)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE
Confidence 211 111122 22333334444 33 4455555532 22111 0 01111 122344443 458876
Q ss_pred EE-CCeEEEEecCCCceEEEEec
Q 043572 320 LR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 320 ~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
.+ ++.|.|+++.++++++++.-
T Consensus 326 g~~dg~i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 326 GSKDRGVLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp EETTSEEEEEETTTCCEEEEEEC
T ss_pred EeCCCEEEEEECCCCcEEEEEeC
Confidence 65 57899999999999998864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.33 Score=49.20 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=52.4
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
-|+|++..++.|+.|+.||.+..|...... ....++ -.+.+|..|...|+ +.++.+-.|+++
T Consensus 15 vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~--------------~~~~l~---~H~~~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 15 VITCLQFEDNYVITGADDKMIRVYDSINKK--------------FLLQLS---GHDGGVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp CEEEEEEETTEEEEEETTTEEEEEETTTTE--------------EEEEEE---CCSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEECCCCc--------------EEEEEE---CCCCCEEEEEEcCC-CEEEEEeccccc
Confidence 478999889999999999999999876432 111111 25679999998764 545555568999
Q ss_pred EEeecCcccc
Q 043572 113 FLTDSLLTQP 122 (997)
Q Consensus 113 ~~~~l~~l~~ 122 (997)
.+|++.....
T Consensus 77 ~iw~~~~~~~ 86 (355)
T d1nexb2 77 RVWDIKKGCC 86 (355)
T ss_dssp EEEETTTTEE
T ss_pred cccccccccc
Confidence 9999876543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.82 E-value=0.35 Score=49.45 Aligned_cols=230 Identities=10% Similarity=0.002 Sum_probs=127.2
Q ss_pred eecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEEEeec
Q 043572 38 SDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLFLTDS 117 (997)
Q Consensus 38 ~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l 117 (997)
+..|++|+.|+.. .++.|.+..... ..... -++.+|..+...|+.+.++++-.||+|++|++
T Consensus 26 ~~~g~~l~~~~~~-~v~i~~~~~~~~--------------~~~~~---~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 26 TPAGDKIQYCNGT-SVYTVPVGSLTD--------------TEIYT---EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp CTTSSEEEEEETT-EEEEEETTCSSC--------------CEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred cCCCCEEEEEeCC-EEEEEECCCCce--------------eEEEc---CCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence 3457788887644 477777754321 11111 15679999999999886666667999999998
Q ss_pred Cccccccc--cc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCc
Q 043572 118 LLTQPLKK--LG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGD 194 (997)
Q Consensus 118 ~~l~~~~~--~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 194 (997)
..-..... +. ...++..++..+ ++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~v~~s~----------------------------------------------------d~- 114 (311)
T d1nr0a1 88 TQTTHILKTTIPVFSGPVKDISWDS----------------------------------------------------ES- 114 (311)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT----------------------------------------------------TS-
T ss_pred eccccccccccccccCccccccccc----------------------------------------------------cc-
Confidence 77543211 11 122344444322 11
Q ss_pred eEEEEEEC---ceEEEEEEeCCeEEEEEeEec-CCcceEEEEe--CCE-EEEEEC-CcEEEEEecCCcceeeecCCCCCC
Q 043572 195 NVFAVIIG---KRLVLIELVNGSFVILKEIQC-MDGVKTMVWL--NDS-IIVGTV-NGYSLFSCVTGQSGVIFTLPDVSC 266 (997)
Q Consensus 195 ~~l~Va~k---kki~i~~~~~~~~~~~kei~~-~~~~~~l~~~--~~~-l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~ 266 (997)
..++++.. +.+.++.+..+.. .+.+.. .+.|.++.|. ++. ++.|.. ....++|++++.....+....
T Consensus 115 ~~l~~~~~~~~~~~~v~~~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~--- 189 (311)
T d1nr0a1 115 KRIAAVGEGRERFGHVFLFDTGTS--NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT--- 189 (311)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCB--CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS---
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccceeeeccccccccccccccccccccccccccc---
Confidence 12444432 2356776654422 222221 3567899987 333 555655 457888988776554443321
Q ss_pred CCc-eEEcCCCCeEEE-Ee-CCeEEEEcc-CCCcccc----cccc---CCCCCeEEEe--CcEEEEEE-CCeEEEEecCC
Q 043572 267 PPM-LKLLSKEQKVLL-LV-DNVGVFVDA-HGQPVGG----SLVF---RKSPDAVGEL--SMYVVVLR-GGKMELYHKKS 332 (997)
Q Consensus 267 ~p~-i~~~~~~~e~Ll-~~-~~~g~fv~~-~G~~~r~----~i~w---~~~P~~i~~~--~PYll~~~-~~~ieI~~~~~ 332 (997)
.++ ...+.+++.+++ +. |+...+.+. .|..... .... +.....+++. ..||++-. ++.|.|.++.+
T Consensus 190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 121 222332334444 43 455555554 4443321 1111 1122345554 46888765 57899999999
Q ss_pred CceEEEEecCC
Q 043572 333 GICVQAVTFGG 343 (997)
Q Consensus 333 ~~lvQ~i~~~~ 343 (997)
+.++++++...
T Consensus 270 ~~~~~~l~~~~ 280 (311)
T d1nr0a1 270 LKVEKTIPVGT 280 (311)
T ss_dssp TEEEEEEECCS
T ss_pred CcEEEEEECCC
Confidence 99999997654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.52 E-value=0.35 Score=50.66 Aligned_cols=205 Identities=9% Similarity=-0.026 Sum_probs=113.8
Q ss_pred cCCCcceEEEeecccCcEEEEecCCeEEEeecCc--ccccccccc-ccceEEEEeecccCCccccccccccccccccccC
Q 043572 86 VADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLL--TQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANAS 162 (997)
Q Consensus 86 ~~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~--l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (997)
|...||+.+..-|+...++++-.|+.|++|++.. +..+..+.. ...|+.++..+
T Consensus 5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp----------------------- 61 (371)
T d1k8kc_ 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----------------------- 61 (371)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-----------------------
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-----------------------
Confidence 5678999999889888666656678999999853 222221111 12244444322
Q ss_pred CcccchhhhhccCccccCCccchhcccccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEe--CCEEE
Q 043572 163 TSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWL--NDSII 238 (997)
Q Consensus 163 s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~--~~~l~ 238 (997)
++. .|+.+. .+.|.+|.+..+.+.....+. ....+.++.|. ++.++
T Consensus 62 -----------------------------~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 111 (371)
T d1k8kc_ 62 -----------------------------DSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111 (371)
T ss_dssp -----------------------------TTT-EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------CCC-EEEEEECCCeEEEEeecccccccccccccccccccccccccccccce
Confidence 122 244444 457899998877665544332 23468999997 45688
Q ss_pred EEECC-cEEEEEecCCcceeeecCCCCCCCCce--EEcCCCCeEEE-E-eCCeEEEEccCCCcccc---cccc-------
Q 043572 239 VGTVN-GYSLFSCVTGQSGVIFTLPDVSCPPML--KLLSKEQKVLL-L-VDNVGVFVDAHGQPVGG---SLVF------- 303 (997)
Q Consensus 239 vg~~~-~y~lidl~~g~~~~l~~~~~~~~~p~i--~~~~~~~e~Ll-~-~~~~g~fv~~~G~~~r~---~i~w------- 303 (997)
+|... ...+++++.+.....+........-.+ ..+.+++.+|+ + .|....+.+........ ...|
T Consensus 112 ~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 191 (371)
T d1k8kc_ 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191 (371)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred eecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccce
Confidence 88654 577888776554333221111111122 23333445554 3 45566666643321110 1111
Q ss_pred ------CCC---CCeEEEe--CcEEEEEE-CCeEEEEecCCCceEEEEecCC
Q 043572 304 ------RKS---PDAVGEL--SMYVVVLR-GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 304 ------~~~---P~~i~~~--~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
... ...+++. ..+|++.. ++.|.|.++.++..++++....
T Consensus 192 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 243 (371)
T d1k8kc_ 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243 (371)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred eeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence 111 1233332 34666555 5789999999999999887644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.41 Score=46.84 Aligned_cols=70 Identities=10% Similarity=-0.003 Sum_probs=48.9
Q ss_pred eeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 32 LSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 32 ~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
..|+|++..++.|+-|+.||.+..|...... ....++ -...+|..|.. +.+.++.+-.|++
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~--------------~~~~l~---~H~~~V~~v~~--~~~~l~s~s~D~~ 76 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE--------------CKRILT---GHTGSVLCLQY--DERVIITGSSDST 76 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCC--------------EEEEEC---CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCc--------------EEEEEe---cCCCCEeeeec--ccceeeccccccc
Confidence 5689999888899999999999999876432 112222 14668877653 4554444445889
Q ss_pred EEEeecCcc
Q 043572 112 LFLTDSLLT 120 (997)
Q Consensus 112 l~~~~l~~l 120 (997)
+.+|++..-
T Consensus 77 i~~~~~~~~ 85 (293)
T d1p22a2 77 VRVWDVNTG 85 (293)
T ss_dssp EEEEESSSC
T ss_pred ccccccccc
Confidence 999998664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=96.06 E-value=0.68 Score=45.79 Aligned_cols=229 Identities=12% Similarity=0.111 Sum_probs=122.4
Q ss_pred cCCeEEEE-cCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-CCeEEEeec
Q 043572 40 CQVLIYIG-TQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-DQCLFLTDS 117 (997)
Q Consensus 40 ~~~~l~iG-T~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d~~l~~~~l 117 (997)
.|+.||++ ..+|.+..|....... ...+. ....+..+...++.+.++++-. ++.+.+++.
T Consensus 42 dG~~l~v~~~~~~~i~v~d~~t~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
T d1l0qa2 42 DGTKVYVANAHSNDVSIIDTATNNV--------------IATVP----AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (301)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEE--------------EEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEECCCCEEEEEECCCCce--------------eeeee----ccccccccccccccccccccccccceeeeccc
Confidence 46778865 5788888887754321 11111 2234677888888886666443 348888887
Q ss_pred CccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEE
Q 043572 118 LLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVF 197 (997)
Q Consensus 118 ~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 197 (997)
...+....+....+...++..+ ++ ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------dg-~~~ 130 (301)
T d1l0qa2 104 TSNTVAGTVKTGKSPLGLALSP----------------------------------------------------DG-KKL 130 (301)
T ss_dssp TTTEEEEEEECSSSEEEEEECT----------------------------------------------------TS-SEE
T ss_pred ccceeeeeccccccceEEEeec----------------------------------------------------CC-Cee
Confidence 6654433332223333333221 11 123
Q ss_pred EEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEECC--cEEEEEecCCcceeeecCCCCCCCCceEEc
Q 043572 198 AVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPPMLKLL 273 (997)
Q Consensus 198 ~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p~i~~~ 273 (997)
+++....-.++.+........+.+.....+..+.+.. ..++++... ...+.+...+.....+.... .|.-..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 207 (301)
T d1l0qa2 131 YVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APSGIAV 207 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEEEEEE
T ss_pred eeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccC---Ccceeec
Confidence 3343322222223333334445555666778888874 347777543 34444444333333343322 2322223
Q ss_pred -CCCCeEEEE-eC---CeEEEEcc-CCCccccccccCCCCCeEEEeC--cEEEEEE--CCeEEEEecCCCceEEEEecCC
Q 043572 274 -SKEQKVLLL-VD---NVGVFVDA-HGQPVGGSLVFRKSPDAVGELS--MYVVVLR--GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 274 -~~~~e~Ll~-~~---~~g~fv~~-~G~~~r~~i~w~~~P~~i~~~~--PYll~~~--~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
+++..++++ .+ +....+|. .|+.. .++.-...|..+++.. -||++.. .+.|.|+++.++++++++++..
T Consensus 208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~ 286 (301)
T d1l0qa2 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGK 286 (301)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cccccccccccccceeeeeeeeecCCCeEE-EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCC
Confidence 333344443 33 23444554 33332 2444456788888854 4886553 5789999999999999998743
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.71 Score=46.23 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=73.0
Q ss_pred CceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCceEEcC-CCCe
Q 043572 202 GKRLVLIELVNGSFVILKEIQC-MDGVKTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLLS-KEQK 278 (997)
Q Consensus 202 kkki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~~-~~~e 278 (997)
...+.++...... ....+.- ...+..+.+.+..++.|.. ....+.|+.++.....+... ...+..+. .++.
T Consensus 156 d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~----~~~v~~~~~~~~~ 229 (342)
T d2ovrb2 156 DFMVKVWDPETET--CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----QSLTSGMELKDNI 229 (342)
T ss_dssp TSCEEEEEGGGTE--EEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC----CSCEEEEEEETTE
T ss_pred CCeEEEeecccce--eeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccc----ccceeEEecCCCE
Confidence 3456666555432 2222221 2234566666777777755 46788998877544433321 12233332 2334
Q ss_pred EEEEe-CCeEEEEccCCCcccccccc----CCCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEecC
Q 043572 279 VLLLV-DNVGVFVDAHGQPVGGSLVF----RKSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTFG 342 (997)
Q Consensus 279 ~Ll~~-~~~g~fv~~~G~~~r~~i~w----~~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~~ 342 (997)
++.+. |+...+.+.........+.- ......+.+...++++.. ++.|.|.++.++++++++...
T Consensus 230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred EEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence 44443 45555566543222112221 122334556666776655 578999999999999998653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.89 E-value=0.96 Score=44.62 Aligned_cols=225 Identities=11% Similarity=0.099 Sum_probs=119.6
Q ss_pred eEEE-EcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-CCeEEEeecCcc
Q 043572 43 LIYI-GTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-DQCLFLTDSLLT 120 (997)
Q Consensus 43 ~l~i-GT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d~~l~~~~l~~l 120 (997)
.+|| ++++|.|..+...... .++.++ ... ...-|.+-|+.++++|+-. ++.|.+|++...
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~--------------~~~~i~---~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~ 64 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNK--------------VTATIP---VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEEE---CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEECCCCEEEEEECCCCe--------------EEEEEE---CCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 4676 5788988776654321 111111 233 3567888888887777443 579999999876
Q ss_pred ccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccCCceEEEEE
Q 043572 121 QPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCRGDNVFAVI 200 (997)
Q Consensus 121 ~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~Va 200 (997)
+.+..+..-.+...++..+ ++ ..++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~----------------------------------------------------~~-~~~~~~ 91 (301)
T d1l0qa2 65 NVIATVPAGSSPQGVAVSP----------------------------------------------------DG-KQVYVT 91 (301)
T ss_dssp EEEEEEECSSSEEEEEECT----------------------------------------------------TS-SEEEEE
T ss_pred ceeeeeecccccccccccc----------------------------------------------------cc-cccccc
Confidence 5543332222333333221 11 122333
Q ss_pred EC--ceEEEEEEeCCeEEEEEeEecCCcceEEEEe--CCEEEEEEC--CcEEEEEecCCcceeeecCCCCCCCCceEEc-
Q 043572 201 IG--KRLVLIELVNGSFVILKEIQCMDGVKTMVWL--NDSIIVGTV--NGYSLFSCVTGQSGVIFTLPDVSCPPMLKLL- 273 (997)
Q Consensus 201 ~k--kki~i~~~~~~~~~~~kei~~~~~~~~l~~~--~~~l~vg~~--~~y~lidl~~g~~~~l~~~~~~~~~p~i~~~- 273 (997)
.. +.+.++....+ ...+.+.....+..+.+. +..++++.. ....+.+..++.....++... .|....+
T Consensus 92 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 166 (301)
T d1l0qa2 92 NMASSTLSVIDTTSN--TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVT 166 (301)
T ss_dssp ETTTTEEEEEETTTT--EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS---SEEEEEEC
T ss_pred ccccceeeecccccc--eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC---CceEEEee
Confidence 32 23444444333 344455566677788776 345666654 356777877766555554432 2333333
Q ss_pred CCCCeEEEEeC-CeEE-EEccCCCccccccccCCCCCeEEEeCc--EEEEEE----CCeEEEEecCCCceEEEEecCC
Q 043572 274 SKEQKVLLLVD-NVGV-FVDAHGQPVGGSLVFRKSPDAVGELSM--YVVVLR----GGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 274 ~~~~e~Ll~~~-~~g~-fv~~~G~~~r~~i~w~~~P~~i~~~~P--Yll~~~----~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++...++++.. ...+ ..+..+......+.-...|..+++... ++++.. .+.|.|.++.++.++++++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~ 244 (301)
T d1l0qa2 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS
T ss_pred ccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC
Confidence 33444555532 2223 233232222223333455666666533 444332 2579999999999999987644
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.78 E-value=1.1 Score=44.72 Aligned_cols=72 Identities=17% Similarity=-0.002 Sum_probs=53.2
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+.|+.||.+..|....... ...++ ....+|..+...|+.+.++++-.|
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~--------------~~~~~---~~~~~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--------------VHAIP---LRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--------------EEEEE---CSCSCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeeccccee--------------EEEEe---cccccEEeeEeeccceeeeeeccc
Confidence 579999864 55799999999999998764321 11111 256789999999998877765668
Q ss_pred CeEEEeecCcc
Q 043572 110 QCLFLTDSLLT 120 (997)
Q Consensus 110 ~~l~~~~l~~l 120 (997)
+.+.+++....
T Consensus 119 ~~i~~~~~~~~ 129 (340)
T d1tbga_ 119 NICSIYNLKTR 129 (340)
T ss_dssp CCEEEEESSSS
T ss_pred ceeeccccccc
Confidence 89999987653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.62 Score=48.33 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=53.6
Q ss_pred ceeeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 30 RSLSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 30 ~~~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
.+..|+|++.. ++.|+.|+.+|.+..|....... ..... ....+|..+...+....++++-
T Consensus 120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~--------------~~~~~---~h~~~v~~~~~~~~~~~~~~~~ 182 (388)
T d1erja_ 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------------VMILQ---GHEQDIYSLDYFPSGDKLVSGS 182 (388)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEECCCCCcceeccccccccccccccccc--------------ccccc---cccccccccccccccccccccc
Confidence 34568888864 56899999999999887764321 11111 1466899999999888777756
Q ss_pred cCCeEEEeecCccc
Q 043572 108 CDQCLFLTDSLLTQ 121 (997)
Q Consensus 108 ~d~~l~~~~l~~l~ 121 (997)
.++.+.+|++....
T Consensus 183 ~~~~i~~~d~~~~~ 196 (388)
T d1erja_ 183 GDRTVRIWDLRTGQ 196 (388)
T ss_dssp TTSEEEEEETTTTE
T ss_pred cceeeeeeeccccc
Confidence 67899999986643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.66 E-value=1.2 Score=44.11 Aligned_cols=228 Identities=10% Similarity=0.011 Sum_probs=122.5
Q ss_pred eeeeeEEeecC-CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 31 SLSISPISDCQ-VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 31 ~~~I~ci~~~~-~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
...|+|++... +.++.++.+|.+..+......... ...... -....+..+..-++.. ++++-++
T Consensus 55 ~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~s~~g~-~~~~~~~ 119 (299)
T d1nr0a2 55 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS-----------SKAVAN---KLSSQPLGLAVSADGD-IAVAACY 119 (299)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT-----------TSCCEE---ECSSCEEEEEECTTSS-CEEEEES
T ss_pred CCcEEEEEeeccceeecccceeeEEEeccCCccccc-----------cccccc---cccccccccccccccc-ccccccc
Confidence 45788988653 468888889988877665432110 000000 1344677788778776 4554889
Q ss_pred CeEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhccc
Q 043572 110 QCLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQ 189 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (997)
+.+.+|+....... .....++.++..+
T Consensus 120 ~~i~~~~~~~~~~~---~~~~~~~~~~~s~-------------------------------------------------- 146 (299)
T d1nr0a2 120 KHIAIYSHGKLTEV---PISYNSSCVALSN-------------------------------------------------- 146 (299)
T ss_dssp SEEEEEETTEEEEE---ECSSCEEEEEECT--------------------------------------------------
T ss_pred cccccccccccccc---ccccccccccccc--------------------------------------------------
Confidence 99999985432211 1111233333221
Q ss_pred ccCCceEEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeee-cCCCC
Q 043572 190 HCRGDNVFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIF-TLPDV 264 (997)
Q Consensus 190 ~~~~~~~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~-~~~~~ 264 (997)
++ ..++++.. ..+.+|.+..+.....+....+..|.+++|.. ..|+.|.. ....++|+.++...... .....
T Consensus 147 --~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h 223 (299)
T d1nr0a2 147 --DK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 223 (299)
T ss_dssp --TS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred --cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 23555544 56888988877666656565667889999984 45777765 46888998766433222 22111
Q ss_pred CCCCc-eEEcCCCCeEEE-E-eCCeEEEEccCCCccccccccC---CCCCeEEE--eCcEEEEEE-CCeEEEEec
Q 043572 265 SCPPM-LKLLSKEQKVLL-L-VDNVGVFVDAHGQPVGGSLVFR---KSPDAVGE--LSMYVVVLR-GGKMELYHK 330 (997)
Q Consensus 265 ~~~p~-i~~~~~~~e~Ll-~-~~~~g~fv~~~G~~~r~~i~w~---~~P~~i~~--~~PYll~~~-~~~ieI~~~ 330 (997)
..++ ...+..++.+|+ + .|+...+.|.........+... ..+....+ ...+|++.. ++.|.|.++
T Consensus 224 -~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 224 -TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp -SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred -ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence 1222 223333445554 3 3455556664322111112221 22333232 245777665 467777765
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=1.2 Score=43.75 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=123.0
Q ss_pred eeeeEEeec--CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecC
Q 043572 32 LSISPISDC--QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCD 109 (997)
Q Consensus 32 ~~I~ci~~~--~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d 109 (997)
..|+|++.. ++.|+-|+.||.+..|.+..... ...++ ....+|..+...|....+.....+
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~--------------~~~~~---~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------ERTLK---GHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------------CEEEC---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE--------------EEEEe---CCCCcEEEEeeecccccccccccc
Confidence 579999864 66799999999999998864321 11111 256789999999988866664456
Q ss_pred CeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcc
Q 043572 110 QCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEE 188 (997)
Q Consensus 110 ~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 188 (997)
+++..++............ ...+......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 111 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMP------------------------------------------------- 111 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECS-------------------------------------------------
T ss_pred cccccccccccccccccccccccceeeeccC-------------------------------------------------
Confidence 6777777655332211111 11111111110
Q ss_pred cccCCceEEEEEE-CceEEEEEEeCCeEEEEEeEe-cCCcceEEEEeC--CEEEEEEC-CcEEEEEecCCcceeeecCCC
Q 043572 189 QHCRGDNVFAVII-GKRLVLIELVNGSFVILKEIQ-CMDGVKTMVWLN--DSIIVGTV-NGYSLFSCVTGQSGVIFTLPD 263 (997)
Q Consensus 189 ~~~~~~~~l~Va~-kkki~i~~~~~~~~~~~kei~-~~~~~~~l~~~~--~~l~vg~~-~~y~lidl~~g~~~~l~~~~~ 263 (997)
++. .++.+. ...+.+|....+... +.+. ....+.++.|.. ..++.|.. ....+.|+.++.....+....
T Consensus 112 ---~~~-~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 185 (317)
T d1vyhc1 112 ---NGD-HIVSASRDKTIKMWEVQTGYCV--KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185 (317)
T ss_dssp ---SSS-EEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CCc-eEEeeccCcceeEeecccceee--eEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCC
Confidence 111 233333 345677776654322 2222 234567787774 44666654 467788877665433222111
Q ss_pred C------------------CCCCceEEcCCCCeEEE-Ee-CCeEEEEcc-CCCccccccccCCCC-CeEEEe--CcEEEE
Q 043572 264 V------------------SCPPMLKLLSKEQKVLL-LV-DNVGVFVDA-HGQPVGGSLVFRKSP-DAVGEL--SMYVVV 319 (997)
Q Consensus 264 ~------------------~~~p~i~~~~~~~e~Ll-~~-~~~g~fv~~-~G~~~r~~i~w~~~P-~~i~~~--~PYll~ 319 (997)
. ............+.++. +. |+...+.+. .|.+.+ ++.-...+ ..+.+. ..||++
T Consensus 186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s 264 (317)
T d1vyhc1 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-TLVGHDNWVRGVLFHSGGKFILS 264 (317)
T ss_dssp SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECSSSSCEEE
T ss_pred CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE-EEeCCCCCEEEEEECCCCCEEEE
Confidence 0 00001111111223333 33 333334443 333322 22222222 233333 347776
Q ss_pred EE-CCeEEEEecCCCceEEEEec
Q 043572 320 LR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 320 ~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
.. ++.|.|+++.++++++++.-
T Consensus 265 ~~~dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 265 CADDKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp EETTTEEEEECCTTSCCCEEEEC
T ss_pred EECCCeEEEEECCCCcEEEEEcC
Confidence 65 67899999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.54 E-value=0.71 Score=46.40 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=42.7
Q ss_pred CeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEec-CCeEEEeecCcc
Q 043572 42 VLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFC-DQCLFLTDSLLT 120 (997)
Q Consensus 42 ~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~-d~~l~~~~l~~l 120 (997)
+.++.|+.+|.|..|......- +...... -.-..+..|.+-|+...++|+-+ ++.|++|++...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~-----------~~~i~~~----~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~ 66 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV-----------DKVITIA----DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------EEEEECT----TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEEcCCCEEEEEECCCCeE-----------EEEEECC----CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 4688999999998887764321 0111100 01224667888898886666333 679999999876
Q ss_pred ccc
Q 043572 121 QPL 123 (997)
Q Consensus 121 ~~~ 123 (997)
+.+
T Consensus 67 ~~~ 69 (337)
T d1pbyb_ 67 ETL 69 (337)
T ss_dssp CEE
T ss_pred cEE
Confidence 544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=1.2 Score=44.08 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred eeeeeEEee--cCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEE-Ee
Q 043572 31 SLSISPISD--CQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLL-LF 107 (997)
Q Consensus 31 ~~~I~ci~~--~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv-~l 107 (997)
+..|+|++. .++.|+.|+.||.+..|.+...... .......+ ...+|..+...|..+.+|+ +-
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~~~~~~----h~~~V~~v~f~~~~~~~l~sg~ 76 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQSLR----YKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEEEE----CSSCEEEEEEEESSSEEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc----------eEEEEecC----CCCCEEEEEEeCCCCCEEEEcc
Confidence 346888886 4778999999999999998754321 01111111 4678999999988775555 33
Q ss_pred cCCeEEEeecCcc
Q 043572 108 CDQCLFLTDSLLT 120 (997)
Q Consensus 108 ~d~~l~~~~l~~l 120 (997)
.|+++.+|++..-
T Consensus 77 ~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 77 VQGEILKVDLIGS 89 (342)
T ss_dssp TTSCEEEECSSSS
T ss_pred cccceeeeecccc
Confidence 5789999998653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=2 Score=43.44 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=91.6
Q ss_pred eeeeEEeec----CCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEe
Q 043572 32 LSISPISDC----QVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLF 107 (997)
Q Consensus 32 ~~I~ci~~~----~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l 107 (997)
..|+|++.. ++.|.-|+.||.+..+.+....... ..+ ............+|..+..-++..++++ .
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~--------~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~ 133 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN--------SVE-VNVKSEFQVLAGPISDISWDFEGRRLCV-V 133 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT--------EEE-EEEEEEEECCSSCEEEEEECTTSSEEEE-E
T ss_pred CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee--------eee-cccccccccccCcEEEEEECCCCCccce-e
Confidence 468999863 3467779999999999886543210 000 0000000124568999998888886666 5
Q ss_pred c---CCeEEEeecCcccccccccc-ccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCcc
Q 043572 108 C---DQCLFLTDSLLTQPLKKLGF-LKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVK 183 (997)
Q Consensus 108 ~---d~~l~~~~l~~l~~~~~~~~-~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~ 183 (997)
+ ++.+.+|....-.++..+.. ...++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------------------------------------- 169 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-------------------------------------------- 169 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--------------------------------------------
T ss_pred eccccceEEEEeecccccceeeeecccccccccccc--------------------------------------------
Confidence 4 34788888765444332221 22234333322
Q ss_pred chhcccccCCceEEEEE-ECceEEEEEEeCCeEEEE-EeE-ecCCcceEEEEeC---CEEEEE-ECCcEEEEEecCCcce
Q 043572 184 VKEEEQHCRGDNVFAVI-IGKRLVLIELVNGSFVIL-KEI-QCMDGVKTMVWLN---DSIIVG-TVNGYSLFSCVTGQSG 256 (997)
Q Consensus 184 ~~~~~~~~~~~~~l~Va-~kkki~i~~~~~~~~~~~-kei-~~~~~~~~l~~~~---~~l~vg-~~~~y~lidl~~g~~~ 256 (997)
++...++.+ ....+.+|.....+.... ... .....+.+++|.. ..++.| ......++|+.+++..
T Consensus 170 --------~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~ 241 (325)
T d1pgua1 170 --------SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241 (325)
T ss_dssp --------SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred --------cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence 111223333 345677766544332221 111 1234578899873 345555 4567899999888765
Q ss_pred eeec
Q 043572 257 VIFT 260 (997)
Q Consensus 257 ~l~~ 260 (997)
..+.
T Consensus 242 ~~l~ 245 (325)
T d1pgua1 242 KYIE 245 (325)
T ss_dssp EECC
T ss_pred cccc
Confidence 4443
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=94.97 E-value=0.0049 Score=48.50 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
....|++|-..+.. ..++.||||+||..|+... ....||.++
T Consensus 4 ~~d~C~IC~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR 47 (68)
T d1chca_ 4 VAERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQNPTCPLCK 47 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHHSCSTTTTC
T ss_pred CCCCCccCCcCccC-CcEEeCCCCcCcHHHHHHHHHhCCcCCCCC
Confidence 45679999988865 4557999999999999864 356699443
|
| >d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: LIM only 4 (Lmo4) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.83 E-value=0.0062 Score=38.65 Aligned_cols=29 Identities=17% Similarity=0.552 Sum_probs=26.8
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
..|+.|++.|..+.++.-.-++|||..|.
T Consensus 3 g~Ca~C~~~I~~~e~VmRA~~~VyHl~CF 31 (31)
T d1rutx3 3 GACSACGQSIPASELVMRAQGNVYHLKCF 31 (31)
T ss_dssp EECTTTCCEECTTSEEEEETTEEECGGGC
T ss_pred cccccccCcCChhHhheecccceeeeccC
Confidence 46999999999999999999999999995
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.79 E-value=0.0066 Score=45.44 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=33.5
Q ss_pred EcCCCcCccccCccCCc--cEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 937 INDESLCDSCHARLGTK--LFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~--~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
++++..|++|-..+... +....+|||.||..|+..- ....||.+|
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR 50 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSC
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCC
Confidence 56778899999998653 3333469999999999873 345688554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=94.55 E-value=1.4 Score=44.11 Aligned_cols=68 Identities=6% Similarity=0.006 Sum_probs=46.9
Q ss_pred ecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCcccccccccccc-CCCcceEEEeecccCcEEEEec-CCeEEEee
Q 043572 39 DCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSV-ADSPVESIFVLDDVGKVLLLFC-DQCLFLTD 116 (997)
Q Consensus 39 ~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~qi~vl~~~~~lLv~l~-d~~l~~~~ 116 (997)
.-++.|++|+++|.|..|......- .+ +..+ ....+..+.+.|+...++|+-+ ++.|++|+
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~--------------~~---t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d 68 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTV--------------YK---SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEE--------------EE---EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCE--------------EE---EEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence 4467899999999999988864321 11 1111 2335678888999887777443 57999999
Q ss_pred cCccccc
Q 043572 117 SLLTQPL 123 (997)
Q Consensus 117 l~~l~~~ 123 (997)
+...+.+
T Consensus 69 ~~t~~~~ 75 (346)
T d1jmxb_ 69 LDTCKNT 75 (346)
T ss_dssp TTTTEEE
T ss_pred CccCeee
Confidence 9876543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=2.6 Score=41.20 Aligned_cols=222 Identities=10% Similarity=0.061 Sum_probs=114.6
Q ss_pred eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCC
Q 043572 31 SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQ 110 (997)
Q Consensus 31 ~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~ 110 (997)
...|+|++.. . |+-|+.||.+..+...... . -...+|..+..-+. +.++.+-.|+
T Consensus 13 ~~~I~~l~~s-~-l~sgs~Dg~v~~Wd~~~~~---------------~-------~h~~~V~~~~~~~~-~~~~s~s~D~ 67 (287)
T d1pgua2 13 NKGITALTVN-P-LISGSYDGRIMEWSSSSMH---------------Q-------DHSNLIVSLDNSKA-QEYSSISWDD 67 (287)
T ss_dssp SSCEEEEETT-T-TEEEETTSCEEETTTTEEE---------------C-------CCCSCEEEEECCST-TCCEEEETTT
T ss_pred CCceEEEEEC-c-EEEEeCCCeEEEEECCCCC---------------C-------CCCCCEEEEEecCC-CeEEEEeecc
Confidence 3578898853 3 9999999999877543211 0 14457888876654 3344434588
Q ss_pred eEEEeecCccccccccccccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccc
Q 043572 111 CLFLTDSLLTQPLKKLGFLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQH 190 (997)
Q Consensus 111 ~l~~~~l~~l~~~~~~~~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~ 190 (997)
++.+|++...+... -...++..
T Consensus 68 ~v~~w~~~~~~~~~------~~~~~~~~---------------------------------------------------- 89 (287)
T d1pgua2 68 TLKVNGITKHEFGS------QPKVASAN---------------------------------------------------- 89 (287)
T ss_dssp EEEETTEEEEECSS------CEEEEEEC----------------------------------------------------
T ss_pred cccccccccccccc------ceeeeeec----------------------------------------------------
Confidence 99998764421100 00111111
Q ss_pred cCCceEEEEEECceEEEEEEeCCeEEEEEeEecCCcceEEEEeCCEEEEEECC--cEEEEEecCCcceeeecCCCCCCCC
Q 043572 191 CRGDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGVKTMVWLNDSIIVGTVN--GYSLFSCVTGQSGVIFTLPDVSCPP 268 (997)
Q Consensus 191 ~~~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~~~l~~~~~~l~vg~~~--~y~lidl~~g~~~~l~~~~~~~~~p 268 (997)
.....++++..+.+.++....+ ...+.+.....+.+++..++.+++|... ...++++.+......+.... ....
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v 165 (287)
T d1pgua2 90 -NDGFTAVLTNDDDLLILQSFTG--DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL-RAKP 165 (287)
T ss_dssp -SSSEEEEEETTSEEEEEETTTC--CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC-SSCE
T ss_pred -cCCceEEEeecccceeeeccce--eeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeecc-CCce
Confidence 0112344455555555544333 3344555556667787788889998764 46788875443322222211 1112
Q ss_pred ceEEcCCCCeEEEE-e-CCeEEEEccC-CCcccc----------ccccCCCCCeE---EEeCcEEEEEE-CCeEEEEecC
Q 043572 269 MLKLLSKEQKVLLL-V-DNVGVFVDAH-GQPVGG----------SLVFRKSPDAV---GELSMYVVVLR-GGKMELYHKK 331 (997)
Q Consensus 269 ~i~~~~~~~e~Ll~-~-~~~g~fv~~~-G~~~r~----------~i~w~~~P~~i---~~~~PYll~~~-~~~ieI~~~~ 331 (997)
....+..++.+|++ . +....+.|.. |..... .+.|+...... .....|++.-. ++.|.|.++.
T Consensus 166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 22334434455544 3 4455555643 322110 23332111111 11234666544 5789999987
Q ss_pred C-CceEEEE
Q 043572 332 S-GICVQAV 339 (997)
Q Consensus 332 ~-~~lvQ~i 339 (997)
+ +.+++..
T Consensus 246 ~~~~~~~~~ 254 (287)
T d1pgua2 246 RPMKIIKAL 254 (287)
T ss_dssp CTTCCEEET
T ss_pred CCCeEEEEe
Confidence 6 5555554
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.0079 Score=45.21 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=36.3
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccccc--CcccCC-CCCCCCCccccC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ--GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~--~~~~~~-t~~~f~~~~~~~ 990 (997)
.|++|++.+.+ ++..-.|||+|+..|.... ....|| +++.+..+-++|
T Consensus 2 ~C~Ic~~~~~~-Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLip 52 (56)
T d2baya1 2 LCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52 (56)
T ss_dssp CCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred CCccCCchHHh-cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhcee
Confidence 59999988875 3333448999999998875 245699 999988776554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=2.9 Score=41.26 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=115.8
Q ss_pred eeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeEE
Q 043572 34 ISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCLF 113 (997)
Q Consensus 34 I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l~ 113 (997)
++|++..|+.|+-|+.||.+..|...... ....++ -...+|..+..-+ +.++.+-.|+++.
T Consensus 20 ~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~--------------~~~~~~---~h~~~V~~v~~~~--~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGK--------------CLRTLV---GHTGGVWSSQMRD--NIIISGSTDRTLK 80 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCC--------------EEEECC---CCSSCEEEEEEET--TEEEEEETTSCEE
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEe---CCCCCEEEEEeCC--Cccccceeccccc
Confidence 57888889999999999999999876432 111111 1456888887654 4344444588999
Q ss_pred EeecCccccccccc-cccceEEEEeecccCCccccccccccccccccccCCcccchhhhhccCccccCCccchhcccccC
Q 043572 114 LTDSLLTQPLKKLG-FLKGISVIAKRIRTSDSESTNLLENNSVSSLANASTSTGQRLLQKFGSGIKANGVKVKEEEQHCR 192 (997)
Q Consensus 114 ~~~l~~l~~~~~~~-~~kg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 192 (997)
+|+........... ....+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 106 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH------------------------------------------------------ 106 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE------------------------------------------------------
T ss_pred ccccccccceecccccceeEeeeecc------------------------------------------------------
Confidence 99876543221110 00111111100
Q ss_pred CceEEEEEECceEEEEEEeCCeEEEEEeEecCCcc-eEEEEeCCEEEEEEC-CcEEEEEecCCcceeeecCCCCCCCCce
Q 043572 193 GDNVFAVIIGKRLVLIELVNGSFVILKEIQCMDGV-KTMVWLNDSIIVGTV-NGYSLFSCVTGQSGVIFTLPDVSCPPML 270 (997)
Q Consensus 193 ~~~~l~Va~kkki~i~~~~~~~~~~~kei~~~~~~-~~l~~~~~~l~vg~~-~~y~lidl~~g~~~~l~~~~~~~~~p~i 270 (997)
............+.++....+..... +...... .......+.+..|.. ....+.|+..+.....+. ........
T Consensus 107 ~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~ 182 (342)
T d2ovrb2 107 EKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYS 182 (342)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEE--EECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC--CCSSCEEE
T ss_pred cccccccccceeEEEeecccccceee--eecccccceeeccccceeeeecCCCeEEEeecccceeeEEEc--Cccccccc
Confidence 01112222334455555544332221 1122222 333333445555544 566777776554333332 21111222
Q ss_pred EEcCCCCeEEEEe-CCeEEEEccC-CCccccccccC-CCCCeEEEeCcEEEEEE-CCeEEEEecCCCceEEEEec
Q 043572 271 KLLSKEQKVLLLV-DNVGVFVDAH-GQPVGGSLVFR-KSPDAVGELSMYVVVLR-GGKMELYHKKSGICVQAVTF 341 (997)
Q Consensus 271 ~~~~~~~e~Ll~~-~~~g~fv~~~-G~~~r~~i~w~-~~P~~i~~~~PYll~~~-~~~ieI~~~~~~~lvQ~i~~ 341 (997)
...+ +..++.+. |+...+.|.. |.+.+ ++.-. ..-..+.....|+++.+ ++.|.|+++.+....+.+..
T Consensus 183 ~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 255 (342)
T d2ovrb2 183 LQFD-GIHVVSGSLDTSIRVWDVETGNCIH-TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255 (342)
T ss_dssp EEEC-SSEEEEEETTSCEEEEETTTCCEEE-EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred ccCC-CCEEEEEeCCCeEEEeecccceeee-EecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccc
Confidence 2222 33444443 4455555543 33322 11111 11234566677777665 57899999998888777754
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.0074 Score=46.92 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCcCccccCccCC---ccEEEcCCCeEEEecccccc---CcccCCCCC
Q 043572 939 DESLCDSCHARLGT---KLFAMYPDDTIVCYKCYRRQ---GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~---~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~ 981 (997)
++..|++|...+.. ..+++.||||+||..|+... ....||.++
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR 50 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCC
Confidence 46789999876532 34677899999999999864 244699554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=4.1 Score=40.94 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=73.0
Q ss_pred ceEEEEEEeCCeEEEEEeEec-CCcceEEEEeCC--E-EEEEE-CCcEEEEEecCCcceeeecCCCCCCCC-ceEEc-CC
Q 043572 203 KRLVLIELVNGSFVILKEIQC-MDGVKTMVWLND--S-IIVGT-VNGYSLFSCVTGQSGVIFTLPDVSCPP-MLKLL-SK 275 (997)
Q Consensus 203 kki~i~~~~~~~~~~~kei~~-~~~~~~l~~~~~--~-l~vg~-~~~y~lidl~~g~~~~l~~~~~~~~~p-~i~~~-~~ 275 (997)
+.+.++.|..+. .+.++.. ...+.++.|..+ . +..|. .....++|+.++....-+........+ ....+ ++
T Consensus 139 ~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd 216 (325)
T d1pgua1 139 NFGVFISWDSGN--SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216 (325)
T ss_dssp CSEEEEETTTCC--EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred ceEEEEeecccc--cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence 346677776542 2333322 346788888743 3 44444 456777787665443333322111112 12233 33
Q ss_pred CCeEEEE--eCCeEEEEcc-CCCccccccccCCC-CCeEE--EeCc---EEEEEE-CCeEEEEecCCCceEEEEecCCC
Q 043572 276 EQKVLLL--VDNVGVFVDA-HGQPVGGSLVFRKS-PDAVG--ELSM---YVVVLR-GGKMELYHKKSGICVQAVTFGGE 344 (997)
Q Consensus 276 ~~e~Ll~--~~~~g~fv~~-~G~~~r~~i~w~~~-P~~i~--~~~P---Yll~~~-~~~ieI~~~~~~~lvQ~i~~~~~ 344 (997)
.+.++++ .|+...+.|. .|+..+ ++.=... ...+. ..+| |+++.+ ++.|.|.++.++++++++.....
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 294 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred cceeccccccccceeeeeeccccccc-cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence 3466654 3555666664 454332 2221111 22222 2222 777665 67899999999999999887653
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.41 E-value=0.0061 Score=53.47 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=33.7
Q ss_pred EcCCCcCccccCccCC----------------ccEEEcCCCeEEEeccccccC-------cccCCCCCC
Q 043572 937 INDESLCDSCHARLGT----------------KLFAMYPDDTIVCYKCYRRQG-------ESTSITGRD 982 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~----------------~~f~v~p~g~~~H~~C~~~~~-------~~~~~t~~~ 982 (997)
..++..|++|..+|.. ..+.+.||||+||..|+.... ...||.++.
T Consensus 22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~ 90 (114)
T d1v87a_ 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccc
Confidence 3456789999998853 236678999999999987532 236997663
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.19 E-value=4.1 Score=39.47 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCCcceEEEeecccCcEEEEecCCeEEEeecCcccccc
Q 043572 87 ADSPVESIFVLDDVGKVLLLFCDQCLFLTDSLLTQPLK 124 (997)
Q Consensus 87 ~~~~I~qi~vl~~~~~lLv~l~d~~l~~~~l~~l~~~~ 124 (997)
++.+|..|..-|+.+.++.+-.||+|++|++...+++.
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~ 53 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 53 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 57799999999988855554458999999998765543
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.013 Score=49.70 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEeccccccCcccCCCCC
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSITGR 981 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~t~~ 981 (997)
.-.|++|...+.. ++...||||.||..|..+.....||+++
T Consensus 22 ~l~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr 62 (97)
T d1jm7b_ 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCY 62 (97)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSC
T ss_pred cCCCccCCchhhc-CceeCCCCCchhHHHHHHHHhccccccC
Confidence 3579999998875 4445689999999999887667799554
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.027 Score=46.55 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCcCccccCccCC----------------ccEEEcCCCeEEEecccccc--CcccCCCCC
Q 043572 939 DESLCDSCHARLGT----------------KLFAMYPDDTIVCYKCYRRQ--GESTSITGR 981 (997)
Q Consensus 939 ~~~~C~vC~k~l~~----------------~~f~v~p~g~~~H~~C~~~~--~~~~~~t~~ 981 (997)
.+..|++|...+.. ...++-||||+||..|+..= ....||+++
T Consensus 20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 80 (88)
T d3dplr1 20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80 (88)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSC
T ss_pred CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCC
Confidence 34569999877643 13567899999999999863 346799664
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=4.9 Score=38.35 Aligned_cols=86 Identities=8% Similarity=0.047 Sum_probs=53.7
Q ss_pred ccccCCCCCCCccc--eeeeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEE
Q 043572 17 QFDLSHYSRSSPIR--SLSISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESI 94 (997)
Q Consensus 17 ~~~~~~~~~~~~~~--~~~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi 94 (997)
++|.....+...+. ...|+|++..++.|+.|+.||.+..+.+...... .. .........
T Consensus 39 vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~-------------~~------~~~~~~~~~ 99 (293)
T d1p22a2 39 IWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEML-------------NT------LIHHCEAVL 99 (293)
T ss_dssp EEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEE-------------EE------ECCCCSCEE
T ss_pred EEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccccccc-------------cc------ccccccccc
Confidence 45654433333332 4689999988889999999999999888754321 01 011222333
Q ss_pred EeecccCcEEEEecCCeEEEeecCccc
Q 043572 95 FVLDDVGKVLLLFCDQCLFLTDSLLTQ 121 (997)
Q Consensus 95 ~vl~~~~~lLv~l~d~~l~~~~l~~l~ 121 (997)
...+..+.++.+..++.+.+|+.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (293)
T d1p22a2 100 HLRFNNGMMVTCSKDRSIAVWDMASPT 126 (293)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSS
T ss_pred cccccccceeecccccceeEeeccccc
Confidence 445555556665677899999876543
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.049 Score=40.56 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=33.0
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccccccCcccCC-CCCCCCCcc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQGESTSI-TGRDFKKDV 987 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~~~~~~~-t~~~f~~~~ 987 (997)
-.|++|...+.... +.||||+||..|+.+. ...|| -++.+..++
T Consensus 7 l~C~IC~~~~~~p~--~lpCgH~fC~~Ci~~~-~~~CP~Cr~~~~~~~ 51 (56)
T d1bora_ 7 LRCQQCQAEAKCPK--LLPCLHTLCSGCLEAS-GMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCCS--CSTTSCCSBTTTCSSS-SSSCSSCCSSSSCCS
T ss_pred CCCcccCcccCCCE--EecCCCHHhHHHHHcC-CCcCcCCCCcccCCC
Confidence 48999998887643 4799999999999875 45699 445554443
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.55 E-value=0.05 Score=43.95 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=38.7
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVL 988 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~ 988 (997)
|.++-.|++|+.-+... ++.||||.|...|+... ....|| +++.+..+.+
T Consensus 4 iP~~l~CpIc~~l~~dP--v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l 57 (80)
T d2c2la2 4 IPDYLCGKISFELMREP--CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 57 (80)
T ss_dssp CCSTTBCTTTCSBCSSE--EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCccccCcCcCchhhhh--cccCCcCeecHHHHHHHHhcCCccCCCcccccccccc
Confidence 56778999999888764 35799999999998875 345699 8888765543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=1.3 Score=43.46 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=58.7
Q ss_pred eeeEEeecCCeEEEEcCCc-eEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCe
Q 043572 33 SISPISDCQVLIYIGTQSG-SLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQC 111 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G-~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~ 111 (997)
.+.|+...++.+++|+.+| .+..|.+..... ...... -.+.+|..|..-|+...++++-.||.
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~-------------~~~~~~---~~~~~v~~~~~s~~~~~l~~g~~dg~ 185 (287)
T d1pgua2 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV-------------SFDLKT---PLRAKPSYISISPSETYIAAGDVMGK 185 (287)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEE-------------EEECSS---CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeeeccCcceeeeccccceeeeeeccccce-------------eeeeee---ccCCceeEEEeccCcccccccccccc
Confidence 4567777788999999887 466676643221 000000 14567999999999887777667899
Q ss_pred EEEeecCccccccc--cccccceEEEEeec
Q 043572 112 LFLTDSLLTQPLKK--LGFLKGISVIAKRI 139 (997)
Q Consensus 112 l~~~~l~~l~~~~~--~~~~kg~~~f~~~~ 139 (997)
+++|++........ ......++.++..+
T Consensus 186 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 186 ILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred ccceeecccccccccccccccccceeeecc
Confidence 99999977553321 12234466666554
|
| >d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: Thyroid receptor interacting protein 6, TRIP6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.063 Score=34.84 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCCcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 939 DESLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 939 ~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
.-.+|++|+++|..... ---|..||-+|+
T Consensus 7 tlEkC~~C~~~I~driL--rA~Gk~yHP~CF 35 (35)
T d2dloa1 7 TLEKCATCSQPILDRIL--RAMGKAYHPGCF 35 (35)
T ss_dssp SCCBCTTTCCBCCSCCE--EETTEEECTTTC
T ss_pred HHHHHHHhchHHHHHHH--HHhCCCCCCCCC
Confidence 44699999999997544 556899999995
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.49 E-value=5.4 Score=39.36 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=51.4
Q ss_pred eeeEEeecCCeEEEEcCCceEEEEEeCCCCCCCCCCCCCCCCccccccccccccCCCcceEEEeecccCcEEEEecCCeE
Q 043572 33 SISPISDCQVLIYIGTQSGSLILLSLDPTAATTLHVPNTTPSQQHVSFLKTVSVADSPVESIFVLDDVGKVLLLFCDQCL 112 (997)
Q Consensus 33 ~I~ci~~~~~~l~iGT~~G~ll~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~qi~vl~~~~~lLv~l~d~~l 112 (997)
.+.+....++.++.|+.+|.+..|.+..... ..... -...++..+..-+..+.+++.-.|+++
T Consensus 163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i 225 (355)
T d1nexb2 163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--------------LYILS---GHTDRIYSTIYDHERKRCISASMDTTI 225 (355)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------EEEEC---CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccccccccceeeeecccceeeeeecccccc--------------eeeee---ccccccccccccccceeeecccccceE
Confidence 4555666788999999999999888764321 11011 134567778888888877776678899
Q ss_pred EEeecCccccc
Q 043572 113 FLTDSLLTQPL 123 (997)
Q Consensus 113 ~~~~l~~l~~~ 123 (997)
++|++....++
T Consensus 226 ~i~d~~~~~~~ 236 (355)
T d1nexb2 226 RIWDLENGELM 236 (355)
T ss_dssp EEEETTTCCEE
T ss_pred Eeeeccccccc
Confidence 99998765443
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.086 Score=42.35 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCc
Q 043572 940 ESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKD 986 (997)
Q Consensus 940 ~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~ 986 (997)
...|++|...+.. .++.||||+||..|+..- +...|| ......+.
T Consensus 23 ~~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~ 71 (79)
T d1fbva4 23 FQLCKICAENDKD--VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71 (79)
T ss_dssp TTBCTTTSSSBCC--EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred CCCCccCCCcCCC--eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence 3579999877654 457899999999998653 345699 66666543
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.75 E-value=0.085 Score=42.26 Aligned_cols=52 Identities=8% Similarity=0.048 Sum_probs=39.3
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccC
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIK 990 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~ 990 (997)
|.++-.|++|+.-+.+.+ +.||||.|...|+... +...|| ++..+....+.+
T Consensus 5 iP~~l~CpIc~~~m~dPV--~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p 60 (78)
T d1t1ha_ 5 FPEYFRCPISLELMKDPV--IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp CSSSSSCTTTSCCCSSEE--EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred CCccCCCcCcCchhhCce--EccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence 556779999998887653 4599999999998753 345699 888877665543
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=0.093 Score=42.79 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=36.0
Q ss_pred CcCccccCccCCccEEEcCCCeEEEecccccc---CcccCC-CCCCCCCccccCCC
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ---GESTSI-TGRDFKKDVLIKPG 992 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~---~~~~~~-t~~~f~~~~~~~~~ 992 (997)
-.|++|...+.. -++.||||.|...|+... ....|| -...|....+.+|-
T Consensus 24 l~C~IC~~~~~~--pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~ 77 (86)
T d1rmda2 24 ISCQICEHILAD--PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPV 77 (86)
T ss_dssp TBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCC
T ss_pred cCCccCCcchhc--ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHH
Confidence 479999988765 346799999999999865 345799 44556555555443
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=0.025 Score=41.62 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=30.8
Q ss_pred cCccccCccCC--ccEEEcCCCeEEEecccccc---CcccCCCCC-CCC
Q 043572 942 LCDSCHARLGT--KLFAMYPDDTIVCYKCYRRQ---GESTSITGR-DFK 984 (997)
Q Consensus 942 ~C~vC~k~l~~--~~f~v~p~g~~~H~~C~~~~---~~~~~~t~~-~f~ 984 (997)
.|++|-..+.. ..+.+.||||.+|..|+... +...||+++ +|.
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~ 50 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence 49999888754 34556689999999998863 344699544 443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=87.78 E-value=16 Score=38.17 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=84.5
Q ss_pred EEEEEEC-ceEEEEEEeCCeEEEEEeEecCCcceEEEEe------CCEEEEE--ECCcEEEEEecCCcceeeecCCCC--
Q 043572 196 VFAVIIG-KRLVLIELVNGSFVILKEIQCMDGVKTMVWL------NDSIIVG--TVNGYSLFSCVTGQSGVIFTLPDV-- 264 (997)
Q Consensus 196 ~l~Va~k-kki~i~~~~~~~~~~~kei~~~~~~~~l~~~------~~~l~vg--~~~~y~lidl~~g~~~~l~~~~~~-- 264 (997)
+++++.. ..+.+|.+..++.....++.....+..+.+. |..|+++ ......++|..+++....++....
T Consensus 75 ~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~ 154 (432)
T d1qksa2 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154 (432)
T ss_dssp EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc
Confidence 4566654 5677877766555556666655556666554 4567665 356899999998887666554321
Q ss_pred -------CCCCc-eEEcCCCCeEEEEeC--CeEEEEcc-CCCcccc-ccccCCCCCeEEEeCc--EEEEEE--CCeEEEE
Q 043572 265 -------SCPPM-LKLLSKEQKVLLLVD--NVGVFVDA-HGQPVGG-SLVFRKSPDAVGELSM--YVVVLR--GGKMELY 328 (997)
Q Consensus 265 -------~~~p~-i~~~~~~~e~Ll~~~--~~g~fv~~-~G~~~r~-~i~w~~~P~~i~~~~P--Yll~~~--~~~ieI~ 328 (997)
...+. +..-+++..++++.. +....++. +++..+- ++.=...|..+++..- |+++.. .+.+.+.
T Consensus 155 ~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~ 234 (432)
T d1qksa2 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 234 (432)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEe
Confidence 11111 222233334555432 33334443 2332211 2322344666666533 777765 5688899
Q ss_pred ecCCCceEEEEecCC
Q 043572 329 HKKSGICVQAVTFGG 343 (997)
Q Consensus 329 ~~~~~~lvQ~i~~~~ 343 (997)
+..++..++.+....
T Consensus 235 d~~~~~~~~~~~~g~ 249 (432)
T d1qksa2 235 DTKEGKLVAIEDTGG 249 (432)
T ss_dssp ETTTTEEEEEEECSS
T ss_pred ecccceEEEEeccCc
Confidence 999988888887543
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.45 E-value=0.16 Score=42.95 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred cCccccCccCCccEEEcCCCeEEEecccccc-----CcccCCCCCC
Q 043572 942 LCDSCHARLGTKLFAMYPDDTIVCYKCYRRQ-----GESTSITGRD 982 (997)
Q Consensus 942 ~C~vC~k~l~~~~f~v~p~g~~~H~~C~~~~-----~~~~~~t~~~ 982 (997)
.|++|...+... + ..||||.||..|+... ....||.++.
T Consensus 23 ~CpIC~~~~~~p-v-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 66 (103)
T d1jm7a_ 23 ECPICLELIKEP-V-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66 (103)
T ss_dssp SCSSSCCCCSSC-C-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSC
T ss_pred CCCccCchhCCe-E-EcCCCCchhhHHHHHHHHHCCCCCcCcCCCC
Confidence 599999887653 3 3699999999998653 2246995543
|
| >d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: Eplin, LIMA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.39 Score=31.44 Aligned_cols=32 Identities=9% Similarity=0.370 Sum_probs=23.6
Q ss_pred EcCCCcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 937 INDESLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 937 I~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
.....+|.+|+|.+-.-. -+--+|.++|.+|.
T Consensus 4 ~p~~~kC~~C~K~VY~~E-~~~a~g~~~Hk~CF 35 (35)
T d2d8ya1 4 APARETCVECQKTVYPME-RLLANQQVFHISCF 35 (35)
T ss_dssp SSSSCBCTTTCCBCCTTS-EEECSSSEEETTTC
T ss_pred CCCCcccccCCCEEeeee-eEecCCeehhhccC
Confidence 346789999999986421 12457999999995
|
| >d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: LIM only 4 (Lmo4) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.84 E-value=0.37 Score=30.15 Aligned_cols=28 Identities=21% Similarity=0.672 Sum_probs=23.4
Q ss_pred CcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 941 SLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
+.|+.|+++|... |...-.+..-|..|+
T Consensus 3 ~~CaGC~~~I~DR-flL~v~dr~WH~~CL 30 (30)
T d1rutx1 3 KRCAGCGGKIADR-FLLYAMDSYWHSRCL 30 (30)
T ss_dssp CBBTTTCCBCCCS-EEEEETTEEECGGGC
T ss_pred cccCCCCCccchh-hhhccchhhhhhhhC
Confidence 6899999999974 666777888999985
|
| >d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: Protein c14orf4 (KIAA1865) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.22 Score=37.52 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=33.5
Q ss_pred CcCccccCccCCccEEEcCC--CeEEEecccccc-------CcccCCCCC
Q 043572 941 SLCDSCHARLGTKLFAMYPD--DTIVCYKCYRRQ-------GESTSITGR 981 (997)
Q Consensus 941 ~~C~vC~k~l~~~~f~v~p~--g~~~H~~C~~~~-------~~~~~~t~~ 981 (997)
-.|..|+.+|..+-|+-.|. +|-|..-|.+.+ .+..||+|+
T Consensus 9 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG~ 58 (80)
T d2cs3a1 9 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGE 58 (80)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSS
T ss_pred eeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCCC
Confidence 58999999999999999995 788888887765 355688775
|
| >d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=0.19 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=22.9
Q ss_pred cCCCcCccccCccCCccEEEcCCCeEEEeccc
Q 043572 938 NDESLCDSCHARLGTKLFAMYPDDTIVCYKCY 969 (997)
Q Consensus 938 ~~~~~C~vC~k~l~~~~f~v~p~g~~~H~~C~ 969 (997)
....+|.+|+|.+-.-.- +.-+|.++|.+|.
T Consensus 6 g~~~~C~~C~K~VY~~Er-l~a~g~~yHk~CF 36 (36)
T d2co8a2 6 GAGDLCALCGEHLYVLER-LCVNGHFFHRSCF 36 (36)
T ss_dssp CSSCBCSSSCCBCCTTTB-CCBTTBCCBTTTC
T ss_pred CCCCcccccCCEEeeeeE-EEecCcEeccccC
Confidence 456899999999864111 2457999999995
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=80.78 E-value=26 Score=33.85 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=19.5
Q ss_pred EEEEECCeEEEEecCCCceEEEEecCC
Q 043572 317 VVVLRGGKMELYHKKSGICVQAVTFGG 343 (997)
Q Consensus 317 ll~~~~~~ieI~~~~~~~lvQ~i~~~~ 343 (997)
++....+.+.|++..++.++..+....
T Consensus 266 ~~~~~~~~v~v~d~~~~~~~~~~~~~~ 292 (346)
T d1jmxb_ 266 QIYGVLNRLAKYDLKQRKLIKAANLDH 292 (346)
T ss_dssp EEEEEESEEEEEETTTTEEEEEEECSS
T ss_pred EEEecCCeEEEEECCCCcEEEEEcCCC
Confidence 333344678888888998888887654
|