Citrus Sinensis ID: 043578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MALLGPPELRNSNPQQQSKQSDPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRKKKPAVADTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
cccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHcccccHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccEEEEcccccEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccEEEEcccccccccccccccEEEEccccHHHHHHHHHccccccHHHHHHHHHccccccccEEcc
ccccccHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEccccccHHHHHHEccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHEccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEcHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEEEEccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHccEEEEEEccccccccccccccccEEEEEccccccccccccccEEEEEcccHHHHHHHHHccccccHHHHHHHHHcccHHccEEEEc
mallgppelrnsnpqqqskqsdptaaisdpFMNLMAAnfnktamatptpppmgftengsgtflssgnpcldfffhvvpstppqtltgflnaswahnpLTTLKLICnlrgvrgtgksdkegFYTAALWLHSLHPKTFACNVALFaefgyfkdlPEIIYRLLEGSDVRQIQKAEWERrkrggsrvvkkgiysrrgrKFRMIMSRsrnckqqpkrrkkkpavadTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARyssdpdfrflYDHVSDHFAECLKNDMKLYESGEVTKISLAakwcpsidssfDRATLICESIarkvfpktlyteyegiedahYAYRVRDRLRKQVLVPLRkalelpevyiganrwdslpynRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAagallpheiigslddpfdggqvaELQWKRIVDDLMqkgklrncmaicdvsgsmhgtpMEVSVALGVLVSelseepwkgklitfsenpelqvlegdslrsrtDFVTemewgmntdfQKVFDLILQVAvngnlkpeqMIKRLFVFsdmefdqasanpwetdYQVIVnkdsrstpvlgtqkGVALVSGFSKNMLTLFldnegvinpEQVMEAAISGQEYQKLVVLD
mallgppelrnsnpqqqskqsdPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLegsdvrqiqkaewerrkrggsrvvkkgiysrrgrkfrmimsrsrnckqqpkrrkkkpavadtrelrvanamqrnklekerasalrkekkidtakkaiaryssdpDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPlrkalelpevyiganrwdslpyNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKlitfsenpelqvlegdslRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKdsrstpvlgTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAaisgqeyqklvvld
MALLGPPELRNSNPQQQSKQSDPTAAISDPFMNLMAANFNKtamatptpppmGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWErrkrggsrvvkkgIYSRRGRKFRMIMSRSRNCkqqpkrrkkkpAVADTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVkagkakiaagaLLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
************************************************************TFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEW**********V*KGIY*******************************************************************IARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAIS***********
*ALLGPP************************MNLMAANF***************TENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRK*********************************************************************EKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTL******IEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
MALLGPPEL**************TAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKA***********VVKKGIYSRRGRKFRMIMSR******************DTRELRVANAMQRN**************KIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
******************************FMNLMAANFNKT***TP**PPMGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKA*****************************************************************************KIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
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MALLGPPELRNSNPQQQSKQSDPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRKKKPAVADTRELRxxxxxxxxxxxxxxxxxxxxxKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query639 2.2.26 [Sep-21-2011]
Q5UNY4572 Uncharacterized protein L N/A no 0.469 0.524 0.309 1e-47
>sp|Q5UNY4|YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1 Back     alignment and function desciption
 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 182/352 (51%), Gaps = 52/352 (14%)

Query: 296 ISLAAKWCPSIDSSFDRA-TLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVL 354
           ISL AKW PS    +++A  LI +SI  ++          G+    Y         +++L
Sbjct: 157 ISLCAKWAPSEKQHYNKAPLLIADSIRSQM----------GLTPRQY---------RKML 197

Query: 355 VPLRKALELPEVYIGANRWDSLPYNRVASVA-MKL------------YKDKFLMHDPERF 401
             LR  L++ E+ +  +++D + ++++ SVA MK+             K  F ++    +
Sbjct: 198 TKLRSHLQVLEMLMSTHQYDKIDFSKLPSVALMKMKNAFNRDTNSQGIKSDFRVNLHTSY 257

Query: 402 KKYLEDVKAGKAKIAAGALLPHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMA 461
            KYL+D+  GK K+    + PHE++G      D  Q+ E QW  I   +   G   N  A
Sbjct: 258 TKYLQDLSKGKTKVNTKGIQPHELVGQYLSSSDFDQLVESQWDAIKKGVSDSGTFNNVTA 317

Query: 462 ICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVT 521
           + DVSGSMHG PM+V++ALG+LV+E +  P+ G++ITF E P    L G +L  +   + 
Sbjct: 318 VVDVSGSMHGQPMQVAIALGILVAECTSGPYHGRVITFHEKPSWHHLTGSNLMEKVKCMR 377

Query: 522 EMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQV--- 578
           +  WG +T+ + VFDL+LQ A+N  LKP +MI  LF+F+DM+F+Q   +  E+ ++    
Sbjct: 378 DAPWGGSTNMKSVFDLVLQNAINAKLKPHEMIDTLFIFTDMQFNQCDCSGLESTFEYGQR 437

Query: 579 ----------------IVNKDSRSTPVLGTQKGVALVSGFSKNMLTLFLDNE 614
                           +   +S+S P++   +G  ++SGFS  +L   ++ E
Sbjct: 438 KFTEAGYTFPKVVCWNLRTSNSKSLPLMKNDEGYVMLSGFSAELLKCIMNAE 489

Acanthamoeba polyphaga (taxid: 5757)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query639
224075499651 predicted protein [Populus trichocarpa] 0.982 0.964 0.672 0.0
255543160657 conserved hypothetical protein [Ricinus 0.989 0.961 0.634 0.0
449453862638 PREDICTED: uncharacterized protein L728- 0.956 0.957 0.634 0.0
449531493638 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.956 0.957 0.632 0.0
356495071646 PREDICTED: uncharacterized protein L728- 0.959 0.948 0.622 0.0
359473803647 PREDICTED: uncharacterized protein L728- 0.965 0.953 0.651 0.0
297807339668 hypothetical protein ARALYDRAFT_488135 [ 0.989 0.946 0.618 0.0
357487679729 hypothetical protein MTR_5g045160 [Medic 0.982 0.861 0.624 0.0
15240579673 uncharacterized protein [Arabidopsis tha 0.982 0.933 0.599 0.0
296088734638 unnamed protein product [Vitis vinifera] 0.921 0.923 0.636 0.0
>gi|224075499|ref|XP_002304655.1| predicted protein [Populus trichocarpa] gi|222842087|gb|EEE79634.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/657 (67%), Positives = 516/657 (78%), Gaps = 29/657 (4%)

Query: 2   ALLGPPELRNSNPQQQSKQSDPTAAISDPFMNLMAANFNKTAMATPTPPPMGFTENGSGT 61
           +LLGPPE++   P  Q  Q  PT  + +PF++LM  NFNKT +     P MG+TEN S T
Sbjct: 5   SLLGPPEIKKPVPTPQ--QQAPTT-VRNPFVDLMVDNFNKTTVNQL--PQMGYTENMSAT 59

Query: 62  FLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGF 121
           FLSSGNPCLD FFHVVP+TPP++L   L+++W HNPLTTLKLICNLRGVRGTGKSDKEGF
Sbjct: 60  FLSSGNPCLDLFFHVVPNTPPESLQKRLHSAWNHNPLTTLKLICNLRGVRGTGKSDKEGF 119

Query: 122 YTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRKRGGS 181
           YT+A+WLH+ HPKT ACN+   A+FGYFKDLPEI+YRLLEG DVR+IQK EW  R+R G 
Sbjct: 120 YTSAIWLHNNHPKTLACNIPSMADFGYFKDLPEILYRLLEGPDVRKIQKQEW--RQRKGR 177

Query: 182 RVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRKKKPAVADTRELRVANAMQRNKLEKERA 241
           +  ++  +     K      RS+  K     R   P++     +R+ N  +R ++EKE A
Sbjct: 178 KTGRRAGFKIGQPKTLAPFQRSKRPKNAKSSRNAGPSIPI--HIRIQNEKRRAEMEKENA 235

Query: 242 SALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAK 301
           S  RKE++   AKK I RYS DPD+RFLY+ VSD FA CLK DM+   S   TK+SLAAK
Sbjct: 236 SIARKERRAAMAKKVIERYSHDPDYRFLYEGVSDFFAGCLKTDMQHLNSSNTTKVSLAAK 295

Query: 302 WCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKAL 361
           WCPSIDSSFDR+TL+CESIARKVFP+  Y EYEGIE+AHYAYRVRDRLRK+VLVPLRK L
Sbjct: 296 WCPSIDSSFDRSTLLCESIARKVFPRESYPEYEGIEEAHYAYRVRDRLRKEVLVPLRKVL 355

Query: 362 ELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALL 421
           ELPEVYIGANRWDS+PYNRVASVAMK YK KF  HD ERF++YLEDVKAGK KIAAGALL
Sbjct: 356 ELPEVYIGANRWDSIPYNRVASVAMKFYKKKFFKHDAERFRQYLEDVKAGKTKIAAGALL 415

Query: 422 PHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALG 481
           PHEII SL+D  DGG+VAELQWKRIVDDL+QKGK++NC+A+CDVSGSM GTPMEVSVALG
Sbjct: 416 PHEIIESLNDD-DGGEVAELQWKRIVDDLLQKGKMKNCIAVCDVSGSMSGTPMEVSVALG 474

Query: 482 VLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQV 541
           +LVSEL EEPWKGKLITFS+NP LQ++EGDSL  +T+FV  MEWGMNT+FQKVFDLILQV
Sbjct: 475 LLVSELCEEPWKGKLITFSQNPMLQMVEGDSLLQKTEFVRSMEWGMNTNFQKVFDLILQV 534

Query: 542 AVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK------------------- 582
           AVNGNL+ +QMIKR+FVFSDMEFDQAS NPWETDYQVI  K                   
Sbjct: 535 AVNGNLREDQMIKRVFVFSDMEFDQASCNPWETDYQVIARKFTEKGYGNVIPEIVFWNLR 594

Query: 583 DSRSTPVLGTQKGVALVSGFSKNMLTLFLDNEGVINPEQVMEAAISGQEYQKLVVLD 639
           DSR+TPV GTQKGVALVSGFSKN++ LFLD +G I+PE VM+ AI+G+EYQKLVVLD
Sbjct: 595 DSRATPVPGTQKGVALVSGFSKNLMKLFLDGDGEISPEAVMKEAIAGEEYQKLVVLD 651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543160|ref|XP_002512643.1| conserved hypothetical protein [Ricinus communis] gi|223548604|gb|EEF50095.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449453862|ref|XP_004144675.1| PREDICTED: uncharacterized protein L728-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531493|ref|XP_004172720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495071|ref|XP_003516404.1| PREDICTED: uncharacterized protein L728-like [Glycine max] Back     alignment and taxonomy information
>gi|359473803|ref|XP_002262895.2| PREDICTED: uncharacterized protein L728-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807339|ref|XP_002871553.1| hypothetical protein ARALYDRAFT_488135 [Arabidopsis lyrata subsp. lyrata] gi|297317390|gb|EFH47812.1| hypothetical protein ARALYDRAFT_488135 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357487679|ref|XP_003614127.1| hypothetical protein MTR_5g045160 [Medicago truncatula] gi|355515462|gb|AES97085.1| hypothetical protein MTR_5g045160 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15240579|ref|NP_196825.1| uncharacterized protein [Arabidopsis thaliana] gi|7529276|emb|CAB86628.1| putative protein [Arabidopsis thaliana] gi|18086395|gb|AAL57656.1| AT5g13210/T31B5_30 [Arabidopsis thaliana] gi|332004481|gb|AED91864.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296088734|emb|CBI38184.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query639
TAIR|locus:2183911673 AT5G13210 [Arabidopsis thalian 0.874 0.830 0.606 1.9e-202
TAIR|locus:2087333715 AT3G24780 "AT3G24780" [Arabido 0.793 0.709 0.637 1.1e-187
TAIR|locus:2176501655 AT5G43400 "AT5G43400" [Arabido 0.535 0.522 0.624 5.5e-184
TAIR|locus:2176491643 AT5G43390 "AT5G43390" [Arabido 0.544 0.541 0.590 1.3e-176
DICTYBASE|DDB_G0281913509 DDB_G0281913 "unknown" [Dictyo 0.460 0.577 0.352 3.3e-57
UNIPROTKB|G4MM18795 MGG_06799 "Uncharacterized pro 0.209 0.168 0.417 5.9e-54
TAIR|locus:2183911 AT5G13210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1757 (623.6 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
 Identities = 345/569 (60%), Positives = 415/569 (72%)

Query:     3 LLGPPELRNSNPQQQSKQSDPTAAISDPFMNLMAANFNKXXXXXXXXXX-XGFTENGSGT 61
             LLGPPELR+  P     +   T+  SDPFM+ M +NFN             G+TEN S T
Sbjct:     6 LLGPPELRD--PNSLLPKPTTTSGPSDPFMDAMVSNFNNSARVNNVNSPPMGYTENKSAT 63

Query:    62 FLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGF 121
             +LSSGNPCLDFFFHVVPSTP  +L  +L  +W H+ LTTLKLICNLRGVRGTGKSDKEGF
Sbjct:    64 YLSSGNPCLDFFFHVVPSTPKHSLEQWLQGAWDHDALTTLKLICNLRGVRGTGKSDKEGF 123

Query:   122 YTAALWLHSLHPKTFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWEXXXXXXX 181
             YTAALWLH  HPKT ACN+   ++FGYFKD PE++YR+L+GS++R+IQK+E         
Sbjct:   124 YTAALWLHGRHPKTLACNLESLSQFGYFKDFPELLYRILQGSEIRKIQKSE--RFKRKSE 181

Query:   182 XXXXXXIYSRRGRKFRMIMSRSRNCXXXXXXXXXXXAVADTRELRVANAMQRNKLEKERA 241
                    Y       R+   R R              VA TR LRVANA ++N+ EK RA
Sbjct:   182 ALDRRAPYDGHCYHGRLYGGRGRG---SSRPSSKRKPVA-TRALRVANAERKNQAEKARA 237

Query:   242 SALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAK 301
             S  RK+KK+   K A  RYS DPD+R+L++ VSD FA  LK D++   S +  +ISLAAK
Sbjct:   238 SLDRKKKKVSMGKDAFTRYSCDPDYRYLHERVSDLFANQLKKDLEFLTSDKPNEISLAAK 297

Query:   302 WCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKAL 361
             WCPS+DSSFD+ATL+CESIARK+F +  + EYEG+ +AHYAYRVRDRLRK VLVPLRK L
Sbjct:   298 WCPSLDSSFDKATLLCESIARKIFTRESFPEYEGVVEAHYAYRVRDRLRKDVLVPLRKTL 357

Query:   362 ELPEVYIGANRWDSLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVXXXXXXXXXXXLL 421
             +LPEVY+GA  WD LPYNRVASVAMK YK+ FL HD ERF++YL+D            +L
Sbjct:   358 QLPEVYMGARNWDILPYNRVASVAMKSYKEIFLKHDAERFQQYLDDAKAGKTKVAAGAVL 417

Query:   422 PHEIIGSLDDPFDGGQVAELQWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALG 481
             PHEII  LD   DGGQVAELQWKR VDD+ +KG LRNC+A+CDVSGSM+G PMEV VALG
Sbjct:   418 PHEIIRELDGG-DGGQVAELQWKRTVDDMKEKGSLRNCIAVCDVSGSMNGEPMEVCVALG 476

Query:   482 VLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQV 541
             +LVSELSEEPWKGKLITFS+NPEL +++GD L S+T+FV +M+WGMNTDFQKVFDLIL V
Sbjct:   477 LLVSELSEEPWKGKLITFSQNPELHLVKGDDLYSKTEFVKKMQWGMNTDFQKVFDLILGV 536

Query:   542 AVNGNLKPEQMIKRLFVFSDMEFDQASAN 570
             AV   LKPE+MIKR+FVFSDMEFDQA+++
Sbjct:   537 AVQEKLKPEEMIKRVFVFSDMEFDQAASS 565
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2087333 AT3G24780 "AT3G24780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176501 AT5G43400 "AT5G43400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176491 AT5G43390 "AT5G43390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281913 DDB_G0281913 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4MM18 MGG_06799 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III001380
hypothetical protein (651 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query639
pfam11443414 pfam11443, DUF2828, Domain of unknown function (DU 1e-156
pfam11443414 pfam11443, DUF2828, Domain of unknown function (DU 2e-46
cd00198161 cd00198, vWFA, Von Willebrand factor type A (vWA) 7e-04
>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828) Back     alignment and domain information 
 Score =  454 bits (1170), Expect = e-156
 Identities = 186/328 (56%), Positives = 217/328 (66%), Gaps = 30/328 (9%)

Query: 323 KVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWDSLPYNRVA 382
           K  P+ L    E          VR R RK+VLVPLRKAL+L EV + A +WD + Y+RV 
Sbjct: 95  KDLPELLGRILE-------LGLVRRRYRKEVLVPLRKALQLVEVKMSARQWDKIDYSRVP 147

Query: 383 SVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGS-LDDPFDGGQVAEL 441
           SVAMK YK  FL HD ERF  YLEDVK GKAKI AGALLPH+II S L    D  +VAEL
Sbjct: 148 SVAMKRYKKAFLKHDGERFTAYLEDVKKGKAKINAGALLPHDIIKSVLSGSADDSKVAEL 207

Query: 442 QWKRIVDDLMQKGKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSE 501
           QWK +VDD+ + G LRNC+A+CDVSGSM G PM+V +ALG+LVSELSE P+KG++ITFS 
Sbjct: 208 QWKALVDDMRESGSLRNCIAVCDVSGSMSGPPMDVCIALGLLVSELSEGPFKGRVITFSS 267

Query: 502 NPELQVLEGDSLRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSD 561
           NP+L  ++GDSLR +  FV  M WGM+T+FQKVFDLIL+ AV   L PE M KRLFVFSD
Sbjct: 268 NPQLHHIKGDSLREKVSFVRRMPWGMSTNFQKVFDLILETAVENKLPPEDMPKRLFVFSD 327

Query: 562 MEFDQASA---NPWETDYQVIVNK-----------------DSRS-TPVLGTQKGVALVS 600
           MEFDQAS      WETDY+ I  K                  SRS  PV    +GVALVS
Sbjct: 328 MEFDQASGGTSRRWETDYEAIQRKFKEAGYEVPELVFWNLAGSRSNVPVTSNDEGVALVS 387

Query: 601 GFSKNMLTLFLDNEGVINPEQVMEAAIS 628
           GFS  +L LFL+  GV NP  VM  AI 
Sbjct: 388 GFSPALLKLFLEGGGV-NPMDVMLKAIG 414

This is a uncharacterized domain found in eukaryotes and viruses. Length = 414
>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828) Back     alignment and domain information
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 639
PF11443534 DUF2828: Domain of unknown function (DUF2828); Int 100.0
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.85
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 98.64
PRK10997487 yieM hypothetical protein; Provisional 98.59
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.56
COG2425437 Uncharacterized protein containing a von Willebran 98.47
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 98.42
PF13768155 VWA_3: von Willebrand factor type A domain 98.11
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.1
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 98.01
cd01470198 vWA_complement_factors Complement factors B and C2 98.0
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 97.99
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.89
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.83
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 97.83
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 97.8
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.68
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 97.66
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 97.66
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 97.61
TIGR03788 596 marine_srt_targ marine proteobacterial sortase tar 97.61
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 97.6
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 97.56
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 97.48
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.36
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 97.24
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 97.22
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 97.18
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.15
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 97.14
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.09
PF00092178 VWA: von Willebrand factor type A domain; InterPro 96.96
PRK13685326 hypothetical protein; Provisional 96.89
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 96.79
PRK13406584 bchD magnesium chelatase subunit D; Provisional 96.78
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 96.67
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 96.64
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 96.42
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 96.17
COG3552395 CoxE Protein containing von Willebrand factor type 96.02
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 95.93
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 95.74
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 95.71
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 95.59
COG4245207 TerY Uncharacterized protein encoded in toxicity p 94.57
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 93.82
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 93.42
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 92.43
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 90.15
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 86.92
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 85.36
COG3864396 Uncharacterized protein conserved in bacteria [Fun 84.05
PF11775219 CobT_C: Cobalamin biosynthesis protein CobT VWA do 83.33
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins Back     alignment and domain information 
Probab=100.00  E-value=6.5e-179  Score=1460.56  Aligned_cols=511  Identities=56%  Similarity=0.912  Sum_probs=487.4

Q ss_pred             ccCCCccccCCCCcccccccccCCCCChhhHHHHHHHHHhcCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHHhhChh
Q 043578           55 TENGSGTFLSSGNPCLDFFFHVVPSTPPQTLTGFLNASWAHNPLTTLKLICNLRGVRGTGKSDKEGFYTAALWLHSLHPK  134 (639)
Q Consensus        55 TENga~t~~SSgs~~lD~F~~v~~~t~~~~l~~ll~~AW~eDpl~tLKlif~lR~IRg~GKgeR~~Fy~a~~WL~~~HP~  134 (639)
                      ||||++||.|||||||||||++++.++.+++.+||.+||+|||++|||||||+||||| |||||++||++++|||++||+
T Consensus         1 TENga~t~~SS~~~~lDlF~~v~~~~~~~~l~~l~~~Aw~eDp~~aLKiif~lRdIR~-GkgeR~~F~~~~~wL~~~hP~   79 (534)
T PF11443_consen    1 TENGAVTYASSGSPCLDLFFHVGPRTSPERLKKLFEAAWAEDPLTALKIIFYLRDIRG-GKGEREGFYRALKWLAENHPR   79 (534)
T ss_pred             CCCCccchhccCChHHHhhhhcCCCCChHHHHHHHHHHHhcCHHHHHHHHHHccCCCC-CCccHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999999999999999999999999999999999999999995 999999999999999999999


Q ss_pred             hHHHhhHhhhhcCCCCChHHHHHHHhcCCchhhhhHHHHHHhhcCCcccccccccccccchhhhhhccccccccCccccc
Q 043578          135 TFACNVALFAEFGYFKDLPEIIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRK  214 (639)
Q Consensus       135 Tl~~NL~~l~~~GywKDLl~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (639)
                      |+++|++.+++|||||||++||+++++|...+..++..+                                         
T Consensus        80 tl~~nl~~i~e~GywkDLl~ll~~~~e~~~~~~~~~~~~-----------------------------------------  118 (534)
T PF11443_consen   80 TLAKNLPHIPEYGYWKDLLELLYTILEGKLSRKIDPKEV-----------------------------------------  118 (534)
T ss_pred             HHHHHhhcccccccHHHHHHHHHHHhcCccccccCHHHH-----------------------------------------
Confidence            999999999999999999999999999987764333332                                         


Q ss_pred             CCCcccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 043578          215 KKPAVADTRELRVANAMQRNKLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVT  294 (639)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~~~d~~yraL~~~va~lfa~qL~~D~~~L~~g~~~  294 (639)
                           ...++.+++.+.+++..++++|+++|+++++++++++    .+||+||+||++|+++|++||++|+++|++|+.+
T Consensus       119 -----~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~----~~d~~yr~L~~~v~~lfa~qL~~D~~~l~~~~~~  189 (534)
T PF11443_consen  119 -----LLRREERVANSEEKNQEEKAEAKEERKEKRAQLAKRA----SNDPFYRALHDTVARLFAEQLKKDLEALNSGKKE  189 (534)
T ss_pred             -----hhhhHHHHhhHHHhhhHhHHHhHHHHHHHHHHHHHHh----ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                 1125678888888899999999999999999999999    8999999999999999999999999999999888


Q ss_pred             cccccccccCCCCCCcchhhhHHHHHHHHhCCCCcccccCCCchHHHHHHHHHHHHHHHhHHhhhhcCcccccccccCCC
Q 043578          295 KISLAAKWCPSIDSSFDRATLICESIARKVFPKTLYTEYEGIEDAHYAYRVRDRLRKQVLVPLRKALELPEVYIGANRWD  374 (639)
Q Consensus       295 ~iSLaAKW~PS~~~s~Dr~t~i~~~IA~~Lfp~~s~~~~~~~~~~~Y~~~~R~~lRr~~LspLRk~L~l~E~~msa~~w~  374 (639)
                      +||||||||||+++|||++|+||++||++|||+++            ++++|++|||++||||||+|+|||++||+++|+
T Consensus       190 ~iSLaAKW~PS~~~s~d~~t~~a~~ia~~lfp~~~------------l~~~~~~yRK~~Ls~LRk~l~ivE~~ms~~~w~  257 (534)
T PF11443_consen  190 KISLAAKWAPSENSSHDRSTLIAKAIARLLFPRES------------LGRARKEYRKEVLSPLRKALEIVERYMSANDWD  257 (534)
T ss_pred             ccchHHhhCCCCCCCcchHHHHHHHHHHHhCchhh------------hhhHHHHHHHHHHHHHHHhhcccHHHhhhcccc
Confidence            99999999999999999999999999999999865            789999999999999999999999999999999


Q ss_pred             CCCCcchhHHHHHHhHHHHhhcCHHHHHHHHHHHhcccccccccccchHHHHhhhcCCC-CcchHHHHHHHHHHHHHhhc
Q 043578          375 SLPYNRVASVAMKLYKDKFLMHDPERFKKYLEDVKAGKAKIAAGALLPHEIIGSLDDPF-DGGQVAELQWKRIVDDLMQK  453 (639)
Q Consensus       375 ~I~Y~rVpSvAMk~Yk~aF~khD~eRf~~YL~~V~~GkaKI~a~aLlPheIi~~~~~~~-~~~~vae~QWk~lvd~l~~~  453 (639)
                      +|+|+||||+||++|+++|.|||+|||++||++|++||+|||||+|||||||++++.+. +.+.++|+||++|||+++++
T Consensus       258 ~i~Y~rVpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~~ki~~~~L~P~eiv~~~~~~~~~~~~~~e~qWk~lv~~~~~~  337 (534)
T PF11443_consen  258 EIDYSRVPSVAMKKYKKAFLKHDEERFQEYLEDVKKGKAKINAGTLLPHEIVASALKGDSDDSEVAELQWKTLVDYLKDS  337 (534)
T ss_pred             CCCccccccHHHHHHHHHHHhhCHHHHHHHHHHHhcCcceecCCCCCHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999998761 23468999999999999999


Q ss_pred             CCCcceEEEEcCCCCCCCChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecCCCCHHHHHHHHHhCCCCCCccHHH
Q 043578          454 GKLRNCMAICDVSGSMHGTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLRSRTDFVTEMEWGMNTDFQK  533 (639)
Q Consensus       454 G~l~n~iav~DvSGSM~g~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~g~~L~ekv~~i~~~~wg~nTn~~a  533 (639)
                      |+++||||||||||||+|+||+|||||||||||+++|||||+|||||++|+||+|+|.||.||+++|++++|||||||+|
T Consensus       338 g~l~n~iav~DvSGSM~~~pm~vaiaLgll~ae~~~~pf~~~~ITFs~~P~~~~i~g~~l~ekv~~~~~~~wg~nTn~~a  417 (534)
T PF11443_consen  338 GSLENCIAVCDVSGSMSGPPMDVAIALGLLIAELNKGPFKGRFITFSENPQLHKIKGDTLREKVRFIRRMDWGMNTNFQA  417 (534)
T ss_pred             CCccceEEEEecCCccCccHHHHHHHHHHHHHHhcccccCCeEEeecCCceEEEecCCCHHHHHHHHHhCCcccCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcccccceEEEEecCCcccccC---CCCchhHHHHHHh-----------------cC-CCCCcccC
Q 043578          534 VFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASA---NPWETDYQVIVNK-----------------DS-RSTPVLGT  592 (639)
Q Consensus       534 VFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~---~~w~T~ye~ik~k-----------------~s-~~~PVt~~  592 (639)
                      |||+||++||+|||+||||||+||||||||||+|++   ++|+|+||.|+++                 ++ ..+||+++
T Consensus       418 VFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~iVFWNl~~~~~~~PV~~~  497 (534)
T PF11443_consen  418 VFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEIVFWNLRGRSSNKPVTAN  497 (534)
T ss_pred             HHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCceEEeecCCCCCCCCceeC
Confidence            999999999999999999999999999999999988   5699999999999                 33 45999999


Q ss_pred             CCCeEEeccCCHHHHHHHHcCCC-CCCHHHHHHHhhc
Q 043578          593 QKGVALVSGFSKNMLTLFLDNEG-VINPEQVMEAAIS  628 (639)
Q Consensus       593 ~~GvaLVSGfS~~llK~fLe~~g-~~~P~~vm~~aI~  628 (639)
                      ++||||||||||+|||+||++|| .+||+++|++||+
T Consensus       498 ~~GvaLVSGfS~~llk~~l~~~~~~~~P~~~m~~ai~  534 (534)
T PF11443_consen  498 EKGVALVSGFSPNLLKMFLEGGGKEMDPYSVMLKAIS  534 (534)
T ss_pred             CCCeEEEecCCHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence            99999999999999999999987 8999999999996

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query639
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 3e-08
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 82/493 (16%), Positives = 156/493 (31%), Gaps = 158/493 (32%)

Query: 265 DF-----RFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWC------PSIDSSFDRA 313
           DF     ++ Y  +   F +   ++    +  ++ K  L+ +            S   R 
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 314 -TLIC---ESIARKVFPKTLYTEYEGIEDA-HYAYR-----------VRDRL-------- 349
              +    E + +K   + L   Y+ +        R            RDRL        
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 350 -----RKQVLVPLRKAL-EL-PEVYI------GANR----------------------WD 374
                R Q  + LR+AL EL P   +      G+ +                      W 
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 375 SL-PYNRVASVAMKLYK-----DKFLMHDPERFKKY---LEDVKAGKAKIAAGALLPHE- 424
           +L   N   +V   L K     D       +        +  ++A   ++       +  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 425 IIGSLDD--------PFDGG-QVAEL---QWKRIVDDLMQKGKLRNCMAICDVSGSMHGT 472
           ++  L +         F+   ++  L   ++K++ D L         +++   S ++  T
Sbjct: 248 LV--LLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFL--SAATTTHISLDHHSMTL--T 299

Query: 473 PMEV----SVALGVLVSELSEEPWKGKLITFSENPELQVLEGDSLR---SRTDFVTEMEW 525
           P EV       L     +L  E           NP    +  +S+R   +  D      W
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTT-------NPRRLSIIAESIRDGLATWDN-----W 347

Query: 526 GMNTDFQKVFDLILQVAVNGNLKPE---QMIKRLFVFSDMEFDQASAN-P-------W-- 572
             + +  K+   I++ ++N  L+P    +M  RL VF        SA+ P       W  
Sbjct: 348 -KHVNCDKL-TTIIESSLN-VLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFD 398

Query: 573 --ETDYQVIVNKDSRSTPVLGTQKGVALVSGFSKNML----TLFLDNEGVINPEQVMEAA 626
             ++D  V+VNK  + +          LV    K       +++L+ +  +  E  +  +
Sbjct: 399 VIKSDVMVVVNKLHKYS----------LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 627 ISGQEYQKLVVLD 639
           I    Y      D
Sbjct: 449 IVDH-YNIPKTFD 460
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535 Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query639
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 99.89
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 99.86
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.35
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 97.85
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 97.84
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 97.78
3ibs_A218 Conserved hypothetical protein BATB; structural ge 97.77
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 97.73
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 97.67
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 97.6
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 97.51
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 97.48
4fx5_A 464 VON willebrand factor type A; structural genomics, 97.38
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 97.33
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 97.1
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 97.06
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 97.04
3hrz_D 741 Complement factor B; serine protease, glycosilated 97.02
2b2x_A223 Integrin alpha-1; computational design, antibody-a 97.0
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 97.0
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 96.93
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 96.91
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 96.83
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 96.83
3rag_A242 Uncharacterized protein; structural genomics, PSI- 95.69
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 93.64
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 93.02
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 88.84
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 88.25
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
Probab=99.89  E-value=1.7e-22  Score=223.21  Aligned_cols=371  Identities=14%  Similarity=0.161  Sum_probs=251.1

Q ss_pred             hHHHHHHHHHh---cCHHHHHHHHHHhhcCCCCCCc----hhHHHHHHHHHHHhhChhhHHHhhHhhhhcCCC--CChHH
Q 043578           84 TLTGFLNASWA---HNPLTTLKLICNLRGVRGTGKS----DKEGFYTAALWLHSLHPKTFACNVALFAEFGYF--KDLPE  154 (639)
Q Consensus        84 ~l~~ll~~AW~---eDpl~tLKlif~lR~IRg~GKg----eR~~Fy~a~~WL~~~HP~Tl~~NL~~l~~~Gyw--KDLl~  154 (639)
                      .-..++.++|.   .+|...+.++.+.|++|| |+|    .|..+.....|+.+.+|..|+.+|......|.|  +|++.
T Consensus       106 ~~r~~~~~~~~~v~~~~~~l~~~~~~~~~~~~-~~~~~~~~r~~r~av~~w~~~~~~~~la~~l~ky~~~~~~~~~Dll~  184 (538)
T 1yvr_A          106 KTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKE-GMKCGMWGRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLR  184 (538)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCchHHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCcHHHHhh
Confidence            44667778888   899999999999999997 777    899999999999999999999999999999999  89886


Q ss_pred             HHHHHhcCCchhhhhHHHHHHhhcCCcccccccccccccchhhhhhccccccccCcccccCCCcccchHHHHHHHHHHhh
Q 043578          155 IIYRLLEGSDVRQIQKAEWERRKRGGSRVVKKGIYSRRGRKFRMIMSRSRNCKQQPKRRKKKPAVADTRELRVANAMQRN  234 (639)
Q Consensus       155 ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (639)
                      +.+...                                                         .                
T Consensus       185 l~h~~~---------------------------------------------------------~----------------  191 (538)
T 1yvr_A          185 LSHIKP---------------------------------------------------------A----------------  191 (538)
T ss_dssp             HTTCCC---------------------------------------------------------S----------------
T ss_pred             hcCCCC---------------------------------------------------------c----------------
Confidence            533100                                                         0                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCCCcchhh
Q 043578          235 KLEKERASALRKEKKIDTAKKAIARYSSDPDFRFLYDHVSDHFAECLKNDMKLYESGEVTKISLAAKWCPSIDSSFDRAT  314 (639)
Q Consensus       235 ~~~~~~a~~~r~~~~~~~~~~~~~~~~~d~~yraL~~~va~lfa~qL~~D~~~L~~g~~~~iSLaAKW~PS~~~s~Dr~t  314 (639)
                                                          .....+|..+|.+|.+.           ++||.|+...+++...
T Consensus       192 ------------------------------------~~~~~l~~~~l~~~~~~-----------~~k~~~~~~~~~~~~~  224 (538)
T 1yvr_A          192 ------------------------------------NEGLTMVAKYVSKGWKE-----------VQEAYKEKELSPETEK  224 (538)
T ss_dssp             ------------------------------------SHHHHHHHHHHHTCHHH-----------HHHHTTTCCCCHHHHH
T ss_pred             ------------------------------------HHHHHHHHHHhcCCHHH-----------HHHhhccccccccHHH
Confidence                                                00123455555554433           2899999987764211


Q ss_pred             hHHHHHHHHhCCCCcccccCCCch-HHHHHHHHHHHHHHHhHHhhhhcCcccc-----cccccCCCCCCCcchhHHHHHH
Q 043578          315 LICESIARKVFPKTLYTEYEGIED-AHYAYRVRDRLRKQVLVPLRKALELPEV-----YIGANRWDSLPYNRVASVAMKL  388 (639)
Q Consensus       315 ~i~~~IA~~Lfp~~s~~~~~~~~~-~~Y~~~~R~~lRr~~LspLRk~L~l~E~-----~msa~~w~~I~Y~rVpSvAMk~  388 (639)
                       +.+.|....          .+.. ..|         ++++..|+++--..|.     .++.+.|+.| +.++|..||.+
T Consensus       225 -~~~~~~~~~----------~~~~~~~~---------~~~~~~i~~~~~t~E~~~~~l~~~~~~we~l-~~~~~~~allr  283 (538)
T 1yvr_A          225 -VLKYLEATE----------RVKRTKDE---------LEIIHLIDEYRLVREHLLTIHLKSKEIWKSL-LQDMPLTALLR  283 (538)
T ss_dssp             -HHHHHHHHH----------HHHTCCCH---------HHHHHHHHHHCCCGGGSCTTGGGCHHHHHHH-HHTCCHHHHHH
T ss_pred             -HHHHHHHHH----------HHHhcCCH---------HHHHHHHHhcCCCHhhchhhhcCCHHHHHHH-HhcCCHHHHHH
Confidence             112121111          0000 112         4567888887666677     7888999988 78999999999


Q ss_pred             hHHHHhhcC-----HHHHHHHHHHHhcccccccccccchHHHHhhhc---CCCCcchHHHHHHH------HHHHH--Hhh
Q 043578          389 YKDKFLMHD-----PERFKKYLEDVKAGKAKIAAGALLPHEIIGSLD---DPFDGGQVAELQWK------RIVDD--LMQ  452 (639)
Q Consensus       389 Yk~aF~khD-----~eRf~~YL~~V~~GkaKI~a~aLlPheIi~~~~---~~~~~~~vae~QWk------~lvd~--l~~  452 (639)
                      +-..|++++     .++++++++.+.. +.++..+.++|+.++.++.   .+  .+......|+      ...+.  .+.
T Consensus       284 nlr~~~~~g~~~~~~~~~~~v~~~L~~-~~~v~~s~~~P~~~~~a~r~y~~g--~~~~~~i~w~~~~r~~~al~~~~~~~  360 (538)
T 1yvr_A          284 NLGKMTADSVLAPASSEVSSVCERLTN-EKLLKKARIHPFHILVALETYKKG--HGNRGKLRWIPDTSIVEALDNAFYKS  360 (538)
T ss_dssp             HHHHHHHTTTTCTTCHHHHHHHHHHTC-HHHHHHTTCCHHHHHHHHHHHHHC--C-----CCCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCchHHHHHHHHHhcC-HHhHhhccCCcHHHHHHHHHhhcc--CCcCCCcCCCcchhHHHHHHHHHHHH
Confidence            999999987     6799999999998 7889999999999988876   22  1111112232      11111  111


Q ss_pred             c----CCCcceEEEEcCCCCCCC-------ChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecC-CCCHHHHHHHH
Q 043578          453 K----GKLRNCMAICDVSGSMHG-------TPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLE-GDSLRSRTDFV  520 (639)
Q Consensus       453 ~----G~l~n~iav~DvSGSM~g-------~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i  520 (639)
                      .    ..-.+.+.|+|+||||.+       ...++|.+|++.....+.   +-.+|+|++....+.+. ..++.+.++.+
T Consensus       361 ~~~~~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d---~vglv~Fs~~~~~~~~t~~~~l~~~l~~l  437 (538)
T 1yvr_A          361 FKLVEPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEK---DSHMVAFSDEMLPCPITVNMLLHEVVEKM  437 (538)
T ss_dssp             SCCCCCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCS---SEEEEEESSSEECCSCCTTSCHHHHHHHH
T ss_pred             HhhcCCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCC---ceEEEEECCCceEcCCCCcccHHHHHHHH
Confidence            1    234578889999999985       235556667665554332   46889999844333444 44799999999


Q ss_pred             HhCCCCCCccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHh------------c-CCCC
Q 043578          521 TEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK------------D-SRST  587 (639)
Q Consensus       521 ~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k------------~-s~~~  587 (639)
                      ..+ ++++||+.......++    .    ..-++.|+||||++++.....+ ....+.++++            + ....
T Consensus       438 ~~~-~~GgT~i~~aL~~a~~----~----~~~~~~iIliTDg~~~~g~~~~-~~~l~~~~~~~~~~v~l~~igig~~~~~  507 (538)
T 1yvr_A          438 SDI-TMGSTDCALPMLWAQK----T----NTAADIFIVFTDCETNVEDVHP-ATALKQYREKMGIPAKLIVCAMTSNGFS  507 (538)
T ss_dssp             TTC-CCSCCCTTHHHHHHHH----T----TCCCSEEEEEECCCCCSSSCCH-HHHHHHHHHHHTCCCEEEEEECSSSSEE
T ss_pred             hcC-CCCCCcHHHHHHHHHh----c----cCCCCEEEEEcCCCCCCCCCCH-HHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence            876 7889999886654443    3    2346889999999988643211 1222233333            2 2345


Q ss_pred             CcccCCCCeEEeccCCHHHHHHHHc
Q 043578          588 PVLGTQKGVALVSGFSKNMLTLFLD  612 (639)
Q Consensus       588 PVt~~~~GvaLVSGfS~~llK~fLe  612 (639)
                      |+..+..|+..++|||..+|+++=+
T Consensus       508 ~~~~~~~~~~~i~g~~e~~l~~Ia~  532 (538)
T 1yvr_A          508 IADPDDRGMLDICGFDSGALDVIRN  532 (538)
T ss_dssp             SSCTTCTTEEEEETTCTTHHHHHHH
T ss_pred             ccCCCCCCceeeccCCHHHHHHHHH
Confidence            6667889999999999999998764
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 639
d1yvra2174 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprot 8e-06
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 24/169 (14%)

Query: 457 RNCMAICDVSGSMH----GTPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLEGDS 512
           +  +   DVS SM+    G+ +  SV    +   ++       ++ FS+      +  + 
Sbjct: 6   KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNM 65

Query: 513 LRSRTDFVTEMEWGMNTDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPW 572
           L              +TD         +                 VF+D E +    +P 
Sbjct: 66  LLHEVVEKMSDITMGSTDCALPMLWAQKT--------NTAADIFIVFTDCETNVEDVHPA 117

Query: 573 ET--DYQVIVNKDSR----------STPVLGTQKGVALVSGFSKNMLTL 609
                Y+  +   ++           +      +G+  + GF    L +
Sbjct: 118 TALKQYREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDV 166

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query639
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 99.45
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 97.87
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 97.2
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 96.76
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 96.17
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 95.79
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 95.67
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 95.51
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 95.34
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 95.31
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 93.85
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 93.41
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.45  E-value=1.1e-13  Score=127.81  Aligned_cols=141  Identities=18%  Similarity=0.217  Sum_probs=99.5

Q ss_pred             cceEEEEcCCCCCCC-------ChhHHHHHHHHHHhhcccCCCCCeEEeeCCCCceeecC-CCCHHHHHHHHHhCCCCCC
Q 043578          457 RNCMAICDVSGSMHG-------TPMEVSVALGVLVSELSEEPWKGKLITFSENPELQVLE-GDSLRSRTDFVTEMEWGMN  528 (639)
Q Consensus       457 ~n~iav~DvSGSM~g-------~Pm~vaiaLgLl~aE~~~~pf~~~fITFS~~P~l~~i~-g~~L~ekv~~i~~~~wg~n  528 (639)
                      ...+.++|+||||.+       ..+.+|+.+++....-+   .+-.+|+|++.+..+.+. ..++.+.++.+....+ ++
T Consensus         6 ~~~vl~iD~SGSM~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~vv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~-gg   81 (174)
T d1yvra2           6 KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE---KDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITM-GS   81 (174)
T ss_dssp             CCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHC---SSEEEEEESSSEECCSCCTTSCHHHHHHHHTTCCC-SC
T ss_pred             CeEEEEEECccccCCcccCccHHHHHHHHHHHHHhhccC---CcEEEEEecCCccccccCccchHHHHHHHhhcccc-cc
Confidence            457889999999964       24555655555544333   378999999998766665 5689888888877665 47


Q ss_pred             ccHHHHHHHHHHHHHhCCCCcccccceEEEEecCCcccccCCCCchhHHHHHHh-------------cCCCCCcccCCCC
Q 043578          529 TDFQKVFDLILQVAVNGNLKPEQMIKRLFVFSDMEFDQASANPWETDYQVIVNK-------------DSRSTPVLGTQKG  595 (639)
Q Consensus       529 Tn~~aVFdlIL~~Av~~~l~~e~M~k~lfVfSDMeFD~a~~~~w~T~ye~ik~k-------------~s~~~PVt~~~~G  595 (639)
                      ||+..+++..+....+        .+.|+||||||++.+...+. +..+..+++             .....|...+++|
T Consensus        82 T~i~~al~~a~~~~~~--------~~~ivllTDg~~~~g~~~~~-~~l~~y~~~~~~~~~~~~i~l~~~g~~~~~~~~~~  152 (174)
T d1yvra2          82 TDCALPMLWAQKTNTA--------ADIFIVFTDCETNVEDVHPA-TALKQYREKMGIPAKLIVCAMTSNGFSIADPDDRG  152 (174)
T ss_dssp             CCTTHHHHHHHHTTCC--------CSEEEEEECCCCCSSSCCHH-HHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCTT
T ss_pred             ccHHHHHHHHHhhhcc--------CCEEEEEeCCCccCCCCCHH-HHHHHHHHHcCCCcEEEEEECcCCCCcccCCCCCC
Confidence            9999988765543222        35799999999988754332 223333333             2233466778899


Q ss_pred             eEEeccCCHHHHHHH
Q 043578          596 VALVSGFSKNMLTLF  610 (639)
Q Consensus       596 vaLVSGfS~~llK~f  610 (639)
                      +..++|||++++|++
T Consensus       153 ~~~i~Gfs~~~~~~i  167 (174)
T d1yvra2         153 MLDICGFDSGALDVI  167 (174)
T ss_dssp             EEEEETTCTTHHHHH
T ss_pred             cEEEecCCHHHHHHH
Confidence            999999999999975
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure