Citrus Sinensis ID: 043580
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 665 | 2.2.26 [Sep-21-2011] | |||||||
| P0C8Q8 | 685 | Pentatricopeptide repeat- | yes | no | 0.974 | 0.945 | 0.589 | 0.0 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.932 | 0.788 | 0.358 | 1e-114 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.953 | 0.802 | 0.344 | 1e-102 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.905 | 0.770 | 0.318 | 1e-100 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.857 | 0.837 | 0.334 | 7e-98 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.878 | 0.837 | 0.340 | 5e-97 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.763 | 0.685 | 0.370 | 1e-95 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.812 | 0.667 | 0.329 | 1e-94 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.869 | 0.68 | 0.334 | 2e-94 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.860 | 0.679 | 0.319 | 3e-94 |
| >sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/650 (58%), Positives = 505/650 (77%), Gaps = 2/650 (0%)
Query: 18 QNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQA 77
++SD E ALVSAL C++ V+ G+QIH + KSGL+SN +I NS++N+YAKC L++ A
Sbjct: 36 ESSDTERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADA 95
Query: 78 KSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWR 137
+S+F + LD + NIM+ GY+R+ RL DA ++FD P + CVSYT++I G+AQN+ W
Sbjct: 96 ESVFRDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWS 155
Query: 138 EALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLL 197
EA+E+FR+MR LG++ NEVTLA+VIS+ HLGGIW+CRML L IKL ++G V +STNLL
Sbjct: 156 EAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLL 215
Query: 198 NMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT 257
+MYC+C L +AR LFDEM ERN+V+WNVMLNG++KAGL+E A ELF++I KD+VSWGT
Sbjct: 216 HMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGT 275
Query: 258 MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG 317
MIDG L+ +L EAL Y ML G+ P++VM+VDL+SA R++ +GLQ+H IVK G
Sbjct: 276 MIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRG 335
Query: 318 FDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFN 377
FDCYDF+QATIIHFYA I LA QFE +KDHIAS NALIAGF++NGM+E AR++F+
Sbjct: 336 FDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFD 395
Query: 378 NMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLK 436
+D++SW+AMISGYAQ+ P +AL LF M+ + VKP+ ITMVSVF AI+S G+L+
Sbjct: 396 QTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLE 455
Query: 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRD-RTTSVSPWNAIIC 495
EG+ AH+Y+ ++I NDNL+AAIIDMYAKCGSI TA +F+ ++ ++++SPWNAIIC
Sbjct: 456 EGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIIC 515
Query: 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE 555
G A HG A L L +YSDL+ IK NSITF+GVLS CCHAGLV+LG+ YF+SMKS + +E
Sbjct: 516 GSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIE 575
Query: 556 PDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615
PD+KHYGCMVDLLG+AG+LE+A+E+I+ MP+KADV+IWG LL+ASR HGNVE+ E AA
Sbjct: 576 PDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATE 635
Query: 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665
LA + PSHG +V+LSN+YADAGRWED +R+EMR ++ FSGVV
Sbjct: 636 LAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTRDVEWSRAFSGVV 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/624 (35%), Positives = 358/624 (57%), Gaps = 4/624 (0%)
Query: 42 GQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIR 101
Q +H + KSGL + ++ N+L+N+Y+K G A+ +FD + N ++S Y +
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 102 NDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASV 161
++ E FD+ P + VS+T+MI+G+ + +A+ V DM G+ P + TL +V
Sbjct: 93 RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152
Query: 162 ISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNI 221
++S + + +H ++KL + G V +S +LLNMY C + A+ +FD M R+I
Sbjct: 153 LASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDI 212
Query: 222 VSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281
SWN M+ + G ++LA FE++ +D+V+W +MI G+ Q AL ++ ML D
Sbjct: 213 SSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRD 272
Query: 282 GI-APNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINL 340
+ +P+ + ++SAC G QIHS IV GFD + +I Y+ CG +
Sbjct: 273 SLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVET 332
Query: 341 ARLQFEL-GIKD-HIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNE 398
AR E G KD I + AL+ G+I+ G + A+ +F +++ RDV +W+AMI GY Q+
Sbjct: 333 ARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHG 392
Query: 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSA 458
A+ LF MV G +PN T+ ++ +S +L G+ H + + + ++S
Sbjct: 393 SYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSN 452
Query: 459 AIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI 518
A+I MYAK G+I +A F IR +VS W ++I LA HG A L+++ + +
Sbjct: 453 ALITMYAKAGNITSASRAFDLIRCERDTVS-WTSMIIALAQHGHAEEALELFETMLMEGL 511
Query: 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAE 578
+ + IT++GV S C HAGLV+ G +YF MK V + P L HY CMVDL GRAG L++A+
Sbjct: 512 RPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 579 EVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638
E I MP++ DVV WG+LL+A R+H N+++G+ AA+ L L+P + + L+N+Y+ G
Sbjct: 572 EFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631
Query: 639 RWEDAFSIRKEMRDCGMKRLPGFS 662
+WE+A IRK M+D +K+ GFS
Sbjct: 632 KWEEAAKIRKSMKDGRVKKEQGFS 655
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/668 (34%), Positives = 353/668 (52%), Gaps = 34/668 (5%)
Query: 4 DHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNS 63
D ++ N ANL+ L LR S +A + +H I G + I N
Sbjct: 6 DLVRAIANRYAANLR-------LCLPLRRTSLQLA----RAVHGNIITFGFQPRAHILNR 54
Query: 64 LINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPI--KCCV 121
LI++Y K ++ A+ +FD S D +A M+SGY + + AR VF+K P+ + V
Sbjct: 55 LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTV 114
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISS-SVHLGGIWECRMLHGL 180
Y +MI GF+ N+ A+ +F M+ G P+ T ASV++ ++ +C H
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAA 174
Query: 181 VIKLMIDGFVIISTNLLNMYCVCSS----LVEARSLFDEMKERNIVSWNVMLNGFAKAGL 236
+K +S L+++Y C+S L AR +FDE+ E++ SW M+ G+ K G
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234
Query: 237 VELARELFERIPSK-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLIS 295
+L EL E + +V++ MI GY+ EAL M R M+ GI ++ +I
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIR 294
Query: 296 ACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIAS 355
AC A G Q+H+ +++ + F +++ Y CG+ + AR FE + S
Sbjct: 295 ACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIFEKMPAKDLVS 353
Query: 356 WNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415
WNAL++G++ +G I +A+ +F M+++++ SW MISG A+N L+LF M G
Sbjct: 354 WNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGF 413
Query: 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSA--AIIDMYAKCGSINTA 473
+P + + A G G+ H +L I + +LSA A+I MYAKCG + A
Sbjct: 414 EPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK--IGFDSSLSAGNALITMYAKCGVVEEA 471
Query: 474 FEVFYHIRDRT----TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL 529
+VF RT SVS WNA+I L HG + +Y ++ K+ I+ + IT + VL
Sbjct: 472 RQVF-----RTMPCLDSVS-WNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVL 525
Query: 530 STCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD 589
+ C HAGLVD G +YF SM++VY + P HY ++DLL R+G+ DAE VI S+P K
Sbjct: 526 TACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPT 585
Query: 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649
IW LL+ R+HGN+E+G AA L GL P H + +LLSN++A G+WE+ +RK
Sbjct: 586 AEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKL 645
Query: 650 MRDCGMKR 657
MRD G+K+
Sbjct: 646 MRDRGVKK 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/675 (31%), Positives = 348/675 (51%), Gaps = 73/675 (10%)
Query: 5 HFHSVFNSQKANLQNS--------------DYELALVSALRYCSAHIAVSQGQQIHSLIF 50
+FHS+ + + +Q S ++ +A+ S +R + A+ +F
Sbjct: 36 NFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALR--------VF 87
Query: 51 KSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDARE 110
K ++ N +I+ Y + G A+ +FD D V+ N+MI GY+RN L ARE
Sbjct: 88 KRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE 147
Query: 111 VFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGG 170
+F+ P + S+ +M+ G+AQN C +A VF M N+V+ +++S+ V
Sbjct: 148 LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSK 203
Query: 171 IWECRMLHGLVIKLMIDGFVIISTN-LLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLN 229
+ E ML + + ++S N LL + +VEAR FD M R++VSWN ++
Sbjct: 204 MEEACMLFK-----SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIIT 258
Query: 230 GFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVM 289
G+A++G ++ AR+LF+ P +DV +W M+ GY+Q + EA ++ M N+V
Sbjct: 259 GYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVS 314
Query: 290 IVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI 349
+++ Y R+ +A+ F++
Sbjct: 315 WNAMLAG-----------------------------------YVQGERMEMAKELFDVMP 339
Query: 350 KDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHG 409
++++WN +I G+ + G I +A+ LF+ M KRD SW+AMI+GY+Q+ AL LF
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399
Query: 410 MVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469
M G + N + S A L+ G+ H ++ + A++ MY KCGS
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459
Query: 470 INTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL 529
I A ++F + + + WN +I G + HG + L+ + +++ +K + T + VL
Sbjct: 460 IEEANDLFKEMAGK--DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 530 STCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD 589
S C H GLVD G +YF +M Y V P+ +HY CMVDLLGRAG LEDA ++++MP + D
Sbjct: 518 SACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577
Query: 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649
IWGTLL ASR+HGN E+ E AA + ++P + VLLSN+YA +GRW D +R
Sbjct: 578 AAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVR 637
Query: 650 MRDCGMKRLPGFSGV 664
MRD G+K++PG+S +
Sbjct: 638 MRDKGVKKVPGYSWI 652
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 206/616 (33%), Positives = 333/616 (54%), Gaps = 46/616 (7%)
Query: 60 IQNSLINLYAKCGLISQAKS----MFDSCSTLDPVACNIMIS--GYIRNDRLNDAREVFD 113
+ N L++L KC L+ K M + LDP A + +I+ + L+ + ++
Sbjct: 52 LHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILK 111
Query: 114 KTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVI---PNEVTLASVISSSVHLGG 170
S+ I GF++++ +E+ +++ M G P+ T + L
Sbjct: 112 GIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRL 171
Query: 171 IWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSW--NVML 228
M+ G V+KL ++ +VS N +
Sbjct: 172 SSLGHMILGHVLKLRLE---------------------------------LVSHVHNASI 198
Query: 229 NGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV 288
+ FA G +E AR++F+ P +D+VSW +I+GY ++ +A+ +Y+ M +G+ P+DV
Sbjct: 199 HMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDV 258
Query: 289 MIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELG 348
++ L+S+C G + + + + G + ++ ++ CG I+ AR F+
Sbjct: 259 TMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNL 318
Query: 349 IKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFH 408
K I SW +I+G+ R G+++ +R+LF++M+++DV W+AMI G Q ++ AL LF
Sbjct: 319 EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQ 378
Query: 409 GMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG 468
M + KP+EITM+ A + G L G W H Y+ S++LN L +++DMYAKCG
Sbjct: 379 EMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCG 438
Query: 469 SINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528
+I+ A VF+ I+ R + + AII GLA+HGDA+ + ++++ I + ITFIG+
Sbjct: 439 NISEALSVFHGIQTRNSLT--YTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGL 496
Query: 529 LSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKA 588
LS CCH G++ G YF MKS +N+ P LKHY MVDLLGRAG LE+A+ ++ SMPM+A
Sbjct: 497 LSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEA 556
Query: 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRK 648
D +WG LL R+HGNVE+GE+AAK L L PS VLL +Y +A WEDA R+
Sbjct: 557 DAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARR 616
Query: 649 EMRDCGMKRLPGFSGV 664
M + G++++PG S +
Sbjct: 617 MMNERGVEKIPGCSSI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 213/626 (34%), Positives = 329/626 (52%), Gaps = 42/626 (6%)
Query: 45 IHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDR 104
+H+ + KSG + FIQN LI+ Y+KCG + + +FD + N +++G +
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 105 LNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISS 164
L++A +F P + ++ SM+ GFAQ+D EAL F M G + NE + ASV+S+
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 165 SVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSW 224
L + + +H L+ K V I + L++MY C
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC--------------------- 200
Query: 225 NVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA 284
G V A+ +F+ + ++VVSW ++I + Q EAL +++ ML +
Sbjct: 201 ----------GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 285 PNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQAT-IIHFYAACGRINLARL 343
P++V + +ISAC A G ++H +VK D I + + YA C RI AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 344 QFE-LGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNM 402
F+ + I++ IA ++I+G+ + AR +F M +R+V SW+A+I+GY QN +
Sbjct: 311 IFDSMPIRNVIAE-TSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEE 369
Query: 403 ALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN------L 456
AL LF + V P + ++ A A L G AH +VL + +
Sbjct: 370 ALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFV 429
Query: 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR 516
++IDMY KCG + + VF + +R WNA+I G A +G N L+++ ++ +
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKMMER--DCVSWNAMIIGFAQNGYGNEALELFREMLES 487
Query: 517 NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576
K + IT IGVLS C HAG V+ G YF SM + V P HY CMVDLLGRAG LE+
Sbjct: 488 GEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEE 547
Query: 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636
A+ +I MPM+ D VIWG+LLAA ++H N+ +G+ A+ L ++PS+ VLLSN+YA+
Sbjct: 548 AKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAE 607
Query: 637 AGRWEDAFSIRKEMRDCGMKRLPGFS 662
G+WED ++RK MR G+ + PG S
Sbjct: 608 LGKWEDVMNVRKSMRKEGVTKQPGCS 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 202/545 (37%), Positives = 307/545 (56%), Gaps = 37/545 (6%)
Query: 123 YTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVI 182
+ +M G A + AL+++ M LG++PN T V+ S E + +HG V+
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161
Query: 183 KLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARE 242
KL D + + T+L++MY L +A +FD+ R++VS+ ++ G+A G +E A++
Sbjct: 162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221
Query: 243 LFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMA 302
LF+ IP KDVVSW MI GY + EAL +++ M+ + P++ +V ++SAC ++ +
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 303 FGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE-LGIKDHIASWNALIA 361
G Q+H I GF I +I Y+ CG + A FE L KD + SWN LI
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKD-VISWNTLIG 340
Query: 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421
G+ + ++ AL LF M+ +G PN++T
Sbjct: 341 GYTHMNLYKE-------------------------------ALLLFQEMLRSGETPNDVT 369
Query: 422 MVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLSAAIIDMYAKCGSINTAFEVFYH 479
M+S+ A A G + GRW H Y+ +T +L ++IDMYAKCG I A +VF
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429
Query: 480 IRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539
I + S+S WNA+I G AMHG A+ + ++S + K I+ + ITF+G+LS C H+G++D
Sbjct: 430 ILHK--SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLD 487
Query: 540 LGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAA 599
LG F++M Y + P L+HYGCM+DLLG +G ++AEE+I M M+ D VIW +LL A
Sbjct: 488 LGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKA 547
Query: 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLP 659
++HGNVE+GE A++L ++P + S VLLSNIYA AGRW + R + D GMK++P
Sbjct: 548 CKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVP 607
Query: 660 GFSGV 664
G S +
Sbjct: 608 GCSSI 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/635 (32%), Positives = 321/635 (50%), Gaps = 95/635 (14%)
Query: 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP 89
L+ C + G++IH L+ KSG + F L N+YAKC
Sbjct: 142 LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC------------------ 183
Query: 90 VACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRIL 149
++N+AR+VFD+ P + VS+ +++ G++QN R ALE+ + M
Sbjct: 184 -------------RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE 230
Query: 150 GVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209
+ P+ +T+ SV+ + L I + +HG ++ D V IST L++MY C SL
Sbjct: 231 NLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL--- 287
Query: 210 RSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLS 269
E AR+LF+ + ++VVSW +MID Y+Q E
Sbjct: 288 ----------------------------ETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319
Query: 270 EALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATII 329
EA+ +++ ML +G+ P DV ++ + AC D D + I
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALHACA--------------------DLGDLERGRFI 359
Query: 330 HFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSA 389
H +L ELG+ +++ N+LI+ + + ++ A +F +Q R + SW+A
Sbjct: 360 H-----------KLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408
Query: 390 MISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNS 449
MI G+AQN +P AL F M VKP+ T VSV AIA +W H V+ +
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468
Query: 450 ITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKI 509
+ N ++ A++DMYAKCG+I A +F + +R V+ WNA+I G HG L++
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER--HVTTWNAMIDGYGTHGFGKAALEL 526
Query: 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLG 569
+ +++K IK N +TF+ V+S C H+GLV+ G + F MK Y++E + HYG MVDLLG
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLG 586
Query: 570 RAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629
RAG+L +A + I MP+K V ++G +L A +IH NV E+AA+ L L P G VL
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVL 646
Query: 630 LSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
L+NIY A WE +R M G+++ PG S V
Sbjct: 647 LANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 216/645 (33%), Positives = 326/645 (50%), Gaps = 67/645 (10%)
Query: 30 LRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP 89
+ C +V G+ H+L +G SN F+ N+L+ +Y++C
Sbjct: 134 FKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRC------------------ 175
Query: 90 VACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDM-RI 148
L+DAR+VFD+ + VS+ S+I +A+ + ALE+F M
Sbjct: 176 -------------RSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222
Query: 149 LGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVE 208
G P+ +TL +V+ LG + LH + + + + L++MY C + E
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE 282
Query: 209 ARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK----DVVSWGTMIDGYLQ 264
A ++F M +++VSWN M+ G+++ G E A LFE++ + DVV+W I GY Q
Sbjct: 283 ANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342
Query: 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFI 324
EAL + R ML GI PN+V ++ ++S C A G +IH +K D
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDL---- 398
Query: 325 QATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNM--QKR 382
R N G D N LI + + ++ AR +F+++ ++R
Sbjct: 399 ------------RKN--------GHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER 438
Query: 383 DVYSWSAMISGYAQNEQPNMALELFHGMV--DAGVKPNEITMVSVFCAIASSGTLKEGRW 440
DV +W+ MI GY+Q+ N ALEL M D +PN T+ A AS L+ G+
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQ 498
Query: 441 AHEYVLNNSI-TLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM 499
H Y L N + +S +IDMYAKCGSI+ A VF ++ + W +++ G M
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT--WTSLMTGYGM 556
Query: 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK 559
HG L I+ ++ + KL+ +T + VL C H+G++D G YF MK+V+ V P +
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616
Query: 560 HYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGL 619
HY C+VDLLGRAG+L A +I MPM+ V+W L+ RIHG VE+GE AA+ + L
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL 676
Query: 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
+H S LLSN+YA+AGRW+D IR MR G+K+ PG S V
Sbjct: 677 ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWV 721
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 204/638 (31%), Positives = 332/638 (52%), Gaps = 66/638 (10%)
Query: 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLD 88
L C+ A G QIH LI K G + F+QNSL++ YA+CG
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG---------------- 183
Query: 89 PVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVF-RDMR 147
L+ AR+VFD+ + VS+TSMI G+A+ D ++A+++F R +R
Sbjct: 184 ---------------ELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVR 228
Query: 148 ILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLV 207
V PN VT+ VIS+ L + ++ + I+ ++ + L++MY C+++
Sbjct: 229 DEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAID 288
Query: 208 EARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVER 267
A+ LFDE N+ N M + + + GL
Sbjct: 289 VAKRLFDEYGASNLDLCNAMASNYVRQGLTR----------------------------- 319
Query: 268 LSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQAT 327
EAL ++ M+ G+ P+ + ++ IS+C + G H +++ GF+ +D I
Sbjct: 320 --EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377
Query: 328 IIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSW 387
+I Y C R + A F+ + +WN+++AG++ NG ++ A + F M ++++ SW
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSW 437
Query: 388 SAMISGYAQNEQPNMALELFHGM-VDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVL 446
+ +ISG Q A+E+F M GV + +TM+S+ A G L +W + Y+
Sbjct: 438 NTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE 497
Query: 447 NNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLT 506
N I L+ L ++DM+++CG +A +F + +R VS W A I +AM G+A
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR--DVSAWTAAIGAMAMAGNAERA 555
Query: 507 LKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566
++++ D+ ++ +K + + F+G L+ C H GLV G+ F SM ++ V P+ HYGCMVD
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 567 LLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626
LLGRAG LE+A ++I MPM+ + VIW +LLAA R+ GNVE+ AA+ + L P S
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675
Query: 627 RVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
VLLSN+YA AGRW D +R M++ G+++ PG S +
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 665 | ||||||
| 225432514 | 694 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.955 | 0.703 | 0.0 | |
| 255551485 | 710 | pentatricopeptide repeat-containing prot | 0.995 | 0.932 | 0.689 | 0.0 | |
| 449516814 | 703 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.943 | 0.644 | 0.0 | |
| 356557876 | 912 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.722 | 0.645 | 0.0 | |
| 449465220 | 874 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.737 | 0.657 | 0.0 | |
| 357447703 | 727 | Pentatricopeptide repeat-containing prot | 0.993 | 0.909 | 0.641 | 0.0 | |
| 224107245 | 571 | predicted protein [Populus trichocarpa] | 0.852 | 0.992 | 0.693 | 0.0 | |
| 297736974 | 619 | unnamed protein product [Vitis vinifera] | 0.884 | 0.949 | 0.621 | 0.0 | |
| 334187761 | 685 | mitochondrial editing factor 18 [Arabido | 0.974 | 0.945 | 0.589 | 0.0 | |
| 297812081 | 939 | pentatricopeptide repeat-containing prot | 0.974 | 0.690 | 0.586 | 0.0 |
| >gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/664 (70%), Positives = 568/664 (85%), Gaps = 1/664 (0%)
Query: 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ 61
P+DH + FN K + Q+SDYEL LVSAL+ CS+ +A+SQGQQIHSL+FKSGL SN F++
Sbjct: 32 PIDHLRAFFNGNK-DTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVK 90
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCV 121
NSLI+ Y KC LIS A+S+FD+CS LDPV+CNIM++GY+++ L++AR +F+K PIK CV
Sbjct: 91 NSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCV 150
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV 181
SYT+M+MG AQN+CW EA+ VF+DMR GVIPNEVTLASVIS+ H+GGI CRMLH L
Sbjct: 151 SYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALS 210
Query: 182 IKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAR 241
KL ++ I++TNL++MYCVCSSL AR LFDE+ ERN+V+WNVMLNG++K+GLV+LAR
Sbjct: 211 FKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLAR 270
Query: 242 ELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301
+LFERIP+KDVVSWGT+IDGY+Q+ERL EAL MYR+ML G+ PN+VMIVDLISACGR M
Sbjct: 271 DLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTM 330
Query: 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361
A EG Q H IIV+ GFDCYDFIQATIIHFYAACG INLA LQFELG KDH++SWNALI+
Sbjct: 331 AVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALIS 390
Query: 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421
GF+RNGMIE ARQLF+ M +RDV+SWS+MISGY+QNEQP++AL+LFH MV GV+PNEIT
Sbjct: 391 GFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEIT 450
Query: 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481
MVSVF AIA+ GTL EGRWAHEY+L+NSI LNDNL+AA+IDMYAKCGSI A ++FY I+
Sbjct: 451 MVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQ 510
Query: 482 DRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541
DR +SVSPWNAIICGLAMHG AN++LK++S L++ IK NSITFIGVLS CCHAGLVD G
Sbjct: 511 DRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTG 570
Query: 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASR 601
E+YFK MK++YN+EP++KHYGCM+DLLGRAG+L++A E+IR MPMKADVVIWGTLLAA R
Sbjct: 571 EKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACR 630
Query: 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGF 661
HGNVE+GERAA++LA L SHG RVLLSNIYADAGRW+DAF +R+ M+ MK+ PG
Sbjct: 631 THGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGC 690
Query: 662 SGVV 665
SGVV
Sbjct: 691 SGVV 694
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/663 (68%), Positives = 570/663 (85%), Gaps = 1/663 (0%)
Query: 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ 61
P H +S+ N K ++ +YEL LVSAL++CS H+ +SQG+QIH L+ KSGL SN FIQ
Sbjct: 46 PFLHLNSLLNP-KTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQ 104
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCV 121
NSLIN+Y KCGL+ AKS+FD C DPV+ N+MISGY+++ +L+ A E+FD+ P+K CV
Sbjct: 105 NSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCV 164
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV 181
SYT+MIMGF+QN+CW +A+E+F+ MR +GV+PNEVT+A+++S+ H GGIW CRMLHGLV
Sbjct: 165 SYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLV 224
Query: 182 IKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAR 241
IK++ + FV++STNLL MYCVCSSLVEAR+LFDEM E+NIVSWNVMLNG++KAG V+ AR
Sbjct: 225 IKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSAR 284
Query: 242 ELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301
+FERIP+KD+V+WGT+IDGY++VER++EAL MYR+M+ G PNDVM+VDLIS CGR M
Sbjct: 285 VVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTM 344
Query: 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361
A EG Q+ S +VK GFDCYDFIQ+TIIH YAACGRIN A LQF +G K+++ASWNALIA
Sbjct: 345 AMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIA 404
Query: 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421
G++RN MI+ A +LFN M +RDV+SWS MISGY QNEQPN+ALELFH MV +G+KPNE+T
Sbjct: 405 GYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVT 464
Query: 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481
MVSV AIA+SGTLKEGRWAHEYV NNSIT++DNLSAAIIDMYAKCGSIN A EVFY IR
Sbjct: 465 MVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIR 524
Query: 482 DRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541
++ ++VSPWNAIICGLA+HG ANL+LKI+SDLE+R+IKLN+ITFIGVL+ CCH GLV+ G
Sbjct: 525 EKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVESG 584
Query: 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASR 601
+R+F SMKS ++++PD+KHYGCMVDLLGRAG+LE+AEE+IRSMPMKADVVIWGTLLAA R
Sbjct: 585 KRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACR 644
Query: 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGF 661
HGNV+VGERAA++LA L+PSHG SRVLLSN+YADAG+WEDAF +R+ M+ M+RLPG+
Sbjct: 645 THGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRLPGY 704
Query: 662 SGV 664
SGV
Sbjct: 705 SGV 707
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/664 (64%), Positives = 544/664 (81%), Gaps = 1/664 (0%)
Query: 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ 61
PL + S N + ++ + D EL++VSAL+YC++ A+S GQQIH+++ K G SNTFI
Sbjct: 41 PLQNLSSFLNGRPSS-SSLDCELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFIL 99
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCV 121
NSLIN+Y KCGL+S A+ +FDSCS LD V+CNIM+SGY++ +L +AR++F K P + CV
Sbjct: 100 NSLINMYVKCGLLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCV 159
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV 181
SYT+MI+G AQNDCW EA+EVF+DMR GV PNEVT+ASV+S+ H+GGIW CRMLH LV
Sbjct: 160 SYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALV 219
Query: 182 IKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAR 241
IKL G V+ISTNLL+MYCV SSL + + LF+EM RN VSWNVML G+ K+GLV+ AR
Sbjct: 220 IKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQAR 279
Query: 242 ELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301
ELFERIP +DV SW MIDG++Q++RL +AL +Y AM + PN+V+IVDL+SACG+++
Sbjct: 280 ELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSV 339
Query: 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361
+ EG Q HS+IVK GF C+DFIQATII FYAAC RI+LA LQ+++ K H+ S N +I
Sbjct: 340 SIEEGRQFHSLIVKNGFVCFDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIV 399
Query: 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421
GF +NGMI+ ARQ+F+ M ++DV+SWS MISGYAQNE P++AL+LFHGM+D+ V+PNEIT
Sbjct: 400 GFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEIT 459
Query: 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481
MVSVF AIA+ G L EGRWAHEYV N I LNDNLSAAIIDMYAKCGSI+TA +VF I+
Sbjct: 460 MVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIK 519
Query: 482 DRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541
D+T++VSPWNAIICGLAMHG ANL+L+I+S+L++R+IKLNSITF+GVLS CCHAGLV++G
Sbjct: 520 DKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVG 579
Query: 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASR 601
ERYF SMK+ + VEP++KHYGC+VDLLGR G+L +AEE++R+MPMKADVVIWGTLLA+SR
Sbjct: 580 ERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSR 639
Query: 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGF 661
HG VE+GERAA++LA LQPSHGP RVLLSN+YADAG WEDA +R+ ++ M R PG+
Sbjct: 640 THGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGY 699
Query: 662 SGVV 665
SGVV
Sbjct: 700 SGVV 703
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/662 (64%), Positives = 541/662 (81%), Gaps = 3/662 (0%)
Query: 4 DHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNS 63
HF +F + + + + + ELALVSAL+YCS+ SQG+Q+HSL+ K GL SNTFIQNS
Sbjct: 253 QHFIGIFCNARLHQNHYECELALVSALKYCSSS---SQGRQLHSLVLKLGLHSNTFIQNS 309
Query: 64 LINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSY 123
LIN+YAK G I A+ +FD+C TL+P++CNIM+ GY + +L++AR++FD P K CVSY
Sbjct: 310 LINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSY 369
Query: 124 TSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIK 183
T+MIMG QN+C+REALEVF+DMR GV+PN++TL +VI + H G I CRM+H + IK
Sbjct: 370 TTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIK 429
Query: 184 LMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAREL 243
L ++G V++STNL+ YC+CS + EAR LFD M E N+VSWNVMLNG+AKAGLV++AREL
Sbjct: 430 LFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMAREL 489
Query: 244 FERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAF 303
FER+P KDV+SWGTMIDGY+ + RL EAL MYRAML G+A N++++V+L+SACGR A
Sbjct: 490 FERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAI 549
Query: 304 GEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGF 363
G+G Q+H ++VK GFDCY+FIQ TIIHFYAACG ++LA LQFE+G KDH+ SWNAL++GF
Sbjct: 550 GDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGF 609
Query: 364 IRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMV 423
I+N M++ AR++F++M +RDV+SWS MISGYAQ +Q +ALELFH MV +G+KPNE+TMV
Sbjct: 610 IKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMV 669
Query: 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR 483
SVF AIA+ GTLKEGRWAHEY+ N SI LNDNL AA+IDMYAKCGSIN+A + F IRD+
Sbjct: 670 SVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDK 729
Query: 484 TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGER 543
T SVSPWNAIICGLA HG A++ L ++SD+++ NIK N ITFIGVLS CCHAGLV+ G R
Sbjct: 730 TFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRR 789
Query: 544 YFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH 603
F+ MKS YNVEPD+KHYGCMVDLLGRAG LE+AEE+IRSMPMKAD+VIWGTLLAA R H
Sbjct: 790 IFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTH 849
Query: 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSG 663
G+V +GERAA+SLAGL PSHG +VLLSNIYADAGRWED +R+ +++ M+R+PG SG
Sbjct: 850 GDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCSG 909
Query: 664 VV 665
V+
Sbjct: 910 VI 911
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/645 (65%), Positives = 535/645 (82%)
Query: 21 DYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSM 80
D EL++VSAL+YC++ A+S GQQIH+++ K G SNTFI NSLIN+Y KCGL+S A+ +
Sbjct: 230 DCELSVVSALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSARLL 289
Query: 81 FDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREAL 140
FDSCS LD V+CNIM+SGY++ +L +AR++F K P + CVSYT+MI+G AQNDCW EA+
Sbjct: 290 FDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAI 349
Query: 141 EVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMY 200
EVF+DMR GV PNEVT+ASV+S+ H+GGIW CRMLH LVIKL G V+ISTNLL+MY
Sbjct: 350 EVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLHMY 409
Query: 201 CVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMID 260
CV SSL + + LF+EM RN VSWNVML G+ K+GLV+ ARELFERIP +DV SW MID
Sbjct: 410 CVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMID 469
Query: 261 GYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDC 320
G++Q++RL +AL +Y AM + PN+V+IVDL+SACG++++ EG Q HS+IVK GF C
Sbjct: 470 GFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVC 529
Query: 321 YDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ 380
+DFIQATII FYAAC RI+LA LQ+++ K H+ S N +I GF +NGMI+ ARQ+F+ M
Sbjct: 530 FDFIQATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMP 589
Query: 381 KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRW 440
++DV+SWS MISGYAQNE P++AL+LFHGM+D+ V+PNEITMVSVF AIA+ G L EGRW
Sbjct: 590 EKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRW 649
Query: 441 AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMH 500
AHEYV N I LNDNLSAAIIDMYAKCGSI+TA +VF I+D+T++VSPWNAIICGLAMH
Sbjct: 650 AHEYVCNKVIPLNDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMH 709
Query: 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKH 560
G ANL+L+I+S+L++R+IKLNSITF+GVLS CCHAGLV++GERYF SMK+ + VEP++KH
Sbjct: 710 GHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERYFWSMKTQHGVEPNIKH 769
Query: 561 YGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620
YGC+VDLLGR G+L +AEE++R+MPMKADVVIWGTLLA+SR HG VE+GERAA++LA LQ
Sbjct: 770 YGCLVDLLGRVGRLREAEEIVRTMPMKADVVIWGTLLASSRTHGEVEIGERAAENLARLQ 829
Query: 621 PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665
PSHGP RVLLSN+YADAG WEDA +R+ ++ M R PG+SGVV
Sbjct: 830 PSHGPGRVLLSNLYADAGLWEDAALVRRAIQSQRMIRSPGYSGVV 874
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula] gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/661 (64%), Positives = 533/661 (80%)
Query: 5 HFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSL 64
HF +F + + + + D ELALVSAL+ CS+ +SQG+QIHSLIFK GL NTFIQNSL
Sbjct: 35 HFIHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSL 94
Query: 65 INLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYT 124
IN+YAKCG I A+ +FD +TLD V+CNIM+SGY+RN ++++AR++FD P K CVSYT
Sbjct: 95 INMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYT 154
Query: 125 SMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL 184
+MIMGF QN +REALEVF+DMR GV+PN++TL +VIS+ HLG + CRM+HGLV+K+
Sbjct: 155 TMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKM 214
Query: 185 MIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELF 244
+ G VI+STNL++ YC+CS + EAR LFDEM ERN+V+WNVMLNG+AK GLV+ ARELF
Sbjct: 215 FVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELF 274
Query: 245 ERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFG 304
+ I KDV+SWGTMIDGY+Q RL EAL +YRAML G PN+VMIV+L+SACGR A
Sbjct: 275 DGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIV 334
Query: 305 EGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFI 364
+G Q+H +VK GFDCY+FIQ TII+FYAACG ++LA LQFE+G+KDH+ SWNAL AGFI
Sbjct: 335 DGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFI 394
Query: 365 RNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424
+NGM++ A + F+ M RDV+SWS MISGYAQ+E P MALELFH M+ G+KPNE+TMVS
Sbjct: 395 KNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVS 454
Query: 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT 484
VF AIA+ GTL+EG+ AHEY+ + SI NDNL AA+IDMYAKCGSIN+A + F IRD
Sbjct: 455 VFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEV 514
Query: 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERY 544
+SVSPWNAIICGLA HG A++ L+++SD+++ +IK N ITFIGVLS CCHAGLV+ G+R
Sbjct: 515 SSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRI 574
Query: 545 FKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHG 604
FK+MKS YNVEPD+KHYGCM+D+LGRAG LE+AEE+IRSMPM+AD+VIWGTLLAA R HG
Sbjct: 575 FKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHG 634
Query: 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
NV +GERAA++LA L PSHG +VLLSNIYA+AG+WE+ +R M+ M R PG+SG
Sbjct: 635 NVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYSGF 694
Query: 665 V 665
V
Sbjct: 695 V 695
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/571 (69%), Positives = 489/571 (85%)
Query: 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPN 154
MISGY+++ L+DAR++F+ P K CVSYT+MIMGF +ND W EA++V+++MR +GV+PN
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60
Query: 155 EVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFD 214
EVT+ASVIS+ +G IW+CRMLHGLVIK+M DGFV++STNLLNMYC SSL EAR+LFD
Sbjct: 61 EVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFD 120
Query: 215 EMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTM 274
EM+E+N+VSWNVMLNG++KAG LA+E+FE IP KD+VSWGT+IDGY++VERL EAL M
Sbjct: 121 EMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLREALMM 180
Query: 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA 334
YR M+ G+ P++V ++DLISACGRAMA EG Q+H ++VK FDCYDF+QAT+IHFY+A
Sbjct: 181 YRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVIHFYSA 240
Query: 335 CGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGY 394
CGRIN A Q E G+KDH+AS NALIAGFIRN +I+ AR+LFN M +RDV+SWS MISGY
Sbjct: 241 CGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGY 300
Query: 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND 454
Q++QP MALELFH MV +G++PNE+TMVSVF AIA+ GTLKEGRWAHEYV NSI LND
Sbjct: 301 TQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLND 360
Query: 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514
NLSA+IIDMYAKCGSINTA EVFY IRD+ ++VSPWN IICGLA HG A L+L+IYSDL+
Sbjct: 361 NLSASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQ 420
Query: 515 KRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574
+R+IKL++ITFIGVLS CCHAGLV LG+ YFKSMKS YN++PD++HYGCMVDLLG+AG+L
Sbjct: 421 RRHIKLSAITFIGVLSACCHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRL 480
Query: 575 EDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634
E+ EE+IRSMPMKADVVIWG LL+A + H N+ +GERAA++LA L PSHGPSR+LLSN+Y
Sbjct: 481 EEVEELIRSMPMKADVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLY 540
Query: 635 ADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665
AD GRWEDAF +R+ M+ M RLPG+SGVV
Sbjct: 541 ADVGRWEDAFLVRRVMQSHRMHRLPGYSGVV 571
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736974|emb|CBI26175.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/664 (62%), Positives = 502/664 (75%), Gaps = 76/664 (11%)
Query: 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ 61
P+DH + FN K + Q+SDYEL LVSAL+ CS+ +A+SQGQQIHSL+FKSGL SN F++
Sbjct: 32 PIDHLRAFFNGNK-DTQHSDYELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVK 90
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCV 121
NSLI+ Y KC LIS A+S+FD+CS LDPV+CNIM++GY+++ L++AR +F+K PIK CV
Sbjct: 91 NSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCV 150
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV 181
SYT+M+MG AQN+CW EA+ VF+DMR GVIPNEVTLASVIS+ H+GGI CRMLH L
Sbjct: 151 SYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALS 210
Query: 182 IKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELAR 241
KL ++ I++TNL++MYCVCS LV+ LAR
Sbjct: 211 FKLGLEALNIVATNLVHMYCVCSRLVD------------------------------LAR 240
Query: 242 ELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301
+LFERIP+KDVVSWGT+IDGY+Q+ERL EAL MYR+ML G+ PN+VMIVDLISACGR M
Sbjct: 241 DLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTM 300
Query: 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361
A EG Q H IIV+ GFDCYDFIQATIIHFYAACG INLA LQFELG KDH++SWNALI+
Sbjct: 301 AVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALIS 360
Query: 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421
GF+RNGMIE ARQLF+ M +RDV+SWS+MISG
Sbjct: 361 GFVRNGMIEQARQLFDEMPERDVFSWSSMISG---------------------------- 392
Query: 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481
RWAHEY+L+NSI LNDNL+AA+IDMYAKCGSI A ++FY I+
Sbjct: 393 -----------------RWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQ 435
Query: 482 DRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541
DR +SVSPWNAIICGLAMHG AN++LK++S L++ IK NSITFIGVLS CCHAGLVD G
Sbjct: 436 DRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTG 495
Query: 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASR 601
E+YFK MK++YN+EP++KHYGCM+DLLGRAG+L++A E+IR MPMKADVVIWGTLLAA R
Sbjct: 496 EKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACR 555
Query: 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGF 661
HGNVE+GERAA++LA L SHG RVLLSNIYADAGRW+DAF +R+ M+ MK+ PG
Sbjct: 556 THGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGC 615
Query: 662 SGVV 665
SGVV
Sbjct: 616 SGVV 619
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187761|ref|NP_197403.2| mitochondrial editing factor 18 [Arabidopsis thaliana] gi|223635651|sp|P0C8Q8.1|PP394_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g19020, mitochondrial; Flags: Precursor gi|332005257|gb|AED92640.1| mitochondrial editing factor 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/650 (58%), Positives = 505/650 (77%), Gaps = 2/650 (0%)
Query: 18 QNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQA 77
++SD E ALVSAL C++ V+ G+QIH + KSGL+SN +I NS++N+YAKC L++ A
Sbjct: 36 ESSDTERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADA 95
Query: 78 KSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWR 137
+S+F + LD + NIM+ GY+R+ RL DA ++FD P + CVSYT++I G+AQN+ W
Sbjct: 96 ESVFRDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWS 155
Query: 138 EALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLL 197
EA+E+FR+MR LG++ NEVTLA+VIS+ HLGGIW+CRML L IKL ++G V +STNLL
Sbjct: 156 EAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLL 215
Query: 198 NMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT 257
+MYC+C L +AR LFDEM ERN+V+WNVMLNG++KAGL+E A ELF++I KD+VSWGT
Sbjct: 216 HMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGT 275
Query: 258 MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG 317
MIDG L+ +L EAL Y ML G+ P++VM+VDL+SA R++ +GLQ+H IVK G
Sbjct: 276 MIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRG 335
Query: 318 FDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFN 377
FDCYDF+QATIIHFYA I LA QFE +KDHIAS NALIAGF++NGM+E AR++F+
Sbjct: 336 FDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFD 395
Query: 378 NMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLK 436
+D++SW+AMISGYAQ+ P +AL LF M+ + VKP+ ITMVSVF AI+S G+L+
Sbjct: 396 QTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLE 455
Query: 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRD-RTTSVSPWNAIIC 495
EG+ AH+Y+ ++I NDNL+AAIIDMYAKCGSI TA +F+ ++ ++++SPWNAIIC
Sbjct: 456 EGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIIC 515
Query: 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE 555
G A HG A L L +YSDL+ IK NSITF+GVLS CCHAGLV+LG+ YF+SMKS + +E
Sbjct: 516 GSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIE 575
Query: 556 PDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615
PD+KHYGCMVDLLG+AG+LE+A+E+I+ MP+KADV+IWG LL+ASR HGNVE+ E AA
Sbjct: 576 PDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATE 635
Query: 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665
LA + PSHG +V+LSN+YADAGRWED +R+EMR ++ FSGVV
Sbjct: 636 LAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRTRDVEWSRAFSGVV 685
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812081|ref|XP_002873924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319761|gb|EFH50183.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/650 (58%), Positives = 505/650 (77%), Gaps = 2/650 (0%)
Query: 18 QNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQA 77
++S+ E ALVSAL C++ V+ G+QIH + KSG +SN FI NS++N+YAKC L+ A
Sbjct: 290 ESSNIERALVSALGSCASSNDVTCGRQIHGRVLKSGHDSNGFICNSVLNMYAKCRLLVDA 349
Query: 78 KSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWR 137
+S+F + + LD + NIM+ GY R+ RL DA ++FD P + CVSYT++I G+AQN+ W
Sbjct: 350 ESVFRAHAKLDSASFNIMVDGYARSRRLGDALKLFDVMPERSCVSYTTLIKGYAQNNQWS 409
Query: 138 EALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLL 197
EA+E+FR+MR LG++ NEVTLA+VIS+ HLGGIW+C+MLH L IKL +D V STNLL
Sbjct: 410 EAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDCKMLHSLAIKLNLDDRVFASTNLL 469
Query: 198 NMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT 257
MYC+CS L +AR LFDEM ERN+V+WNVMLNG++KAGL+E A+ELF++I KD+VSWGT
Sbjct: 470 LMYCICSCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAKELFDQITEKDIVSWGT 529
Query: 258 MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG 317
MIDG L+ +L EAL Y ML G+ P++VM+VDL+SA R++ +GLQ+H IVK G
Sbjct: 530 MIDGCLRKNQLDEALVYYTEMLRRGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKMG 589
Query: 318 FDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFN 377
FDCYDF+QATIIHFYA + LA QFE+ +KDHIAS NALIAGF++NGM+E AR++F+
Sbjct: 590 FDCYDFLQATIIHFYAVSNNLKLALQQFEVSVKDHIASRNALIAGFVKNGMVEQAREVFD 649
Query: 378 NMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLK 436
+ +D++SW+AM+SGYAQ+ P +AL LF M+ + VKP+ ITMVSVF AI+S G+L+
Sbjct: 650 QTRDKDIFSWNAMMSGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLE 709
Query: 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRD-RTTSVSPWNAIIC 495
EG+ AHEY+ +SI NDNL AAII+MYAKCGSI TA +F+ ++ ++++SPWNAIIC
Sbjct: 710 EGKRAHEYLNRSSIPPNDNLIAAIINMYAKCGSIETALNIFHQTKNIFSSTISPWNAIIC 769
Query: 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE 555
G A HG A L L +YSDL+ IK NSITF+GVLS CCHAGLV+LG+ YF+SMKS + +E
Sbjct: 770 GSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIE 829
Query: 556 PDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615
PD+KHYGCMVDLLG++G+LE+A+E+I++MP+KADV+IWG LL+ASRIHGNVE+ E AA
Sbjct: 830 PDIKHYGCMVDLLGKSGKLEEAKEMIKNMPVKADVMIWGMLLSASRIHGNVEIAELAAAE 889
Query: 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665
LA + PSHG +V+LSN+YADAGRWED +R+ MR ++ FSGVV
Sbjct: 890 LAAIDPSHGGCKVMLSNVYADAGRWEDVALVREVMRTRDVEWSRAFSGVV 939
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 665 | ||||||
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.933 | 0.790 | 0.358 | 1.9e-108 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.938 | 0.789 | 0.350 | 8.4e-97 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.658 | 0.643 | 0.397 | 6.9e-96 | |
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.793 | 0.884 | 0.354 | 9.9e-87 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.658 | 0.637 | 0.356 | 2.8e-84 | |
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.457 | 0.543 | 0.420 | 1.7e-82 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.648 | 0.596 | 0.356 | 5.8e-82 | |
| TAIR|locus:2007888 | 731 | AT1G17630 [Arabidopsis thalian | 0.860 | 0.782 | 0.313 | 9.4e-82 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.460 | 0.343 | 0.375 | 1.2e-81 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.503 | 0.706 | 0.416 | 2.5e-81 |
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 224/625 (35%), Positives = 359/625 (57%)
Query: 43 QQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRN 102
Q +H + KSGL + ++ N+L+N+Y+K G A+ +FD + N ++S Y +
Sbjct: 34 QLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKR 93
Query: 103 DRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVI 162
++ E FD+ P + VS+T+MI+G+ + +A+ V DM G+ P + TL +V+
Sbjct: 94 GDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVL 153
Query: 163 SSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIV 222
+S + + +H ++KL + G V +S +LLNMY C + A+ +FD M R+I
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213
Query: 223 SWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDG 282
SWN M+ + G ++LA FE++ +D+V+W +MI G+ Q AL ++ ML D
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273
Query: 283 I-APNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLA 341
+ +P+ + ++SAC G QIHS IV GFD + +I Y+ CG + A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 342 RLQFEL-GIKD-HIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQ 399
R E G KD I + AL+ G+I+ G + A+ +F +++ RDV +W+AMI GY Q+
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 400 PNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAA 459
A+ LF MV G +PN T+ ++ +S +L G+ H + + + ++S A
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK 519
+I MYAK G+I +A F IR +VS W ++I LA HG A L+++ + ++
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVS-WTSMIIALAQHGHAEEALELFETMLMEGLR 512
Query: 520 LNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEE 579
+ IT++GV S C HAGLV+ G +YF MK V + P L HY CMVDL GRAG L++A+E
Sbjct: 513 PDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQE 572
Query: 580 VIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639
I MP++ DVV WG+LL+A R+H N+++G+ AA+ L L+P + + L+N+Y+ G+
Sbjct: 573 FIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGK 632
Query: 640 WEDAFSIRKEMRDCGMKRLPGFSGV 664
WE+A IRK M+D +K+ GFS +
Sbjct: 633 WEEAAKIRKSMKDGRVKKEQGFSWI 657
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 226/645 (35%), Positives = 347/645 (53%)
Query: 24 LALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDS 83
L L LR S +A + +H I G + I N LI++Y K ++ A+ +FD
Sbjct: 19 LRLCLPLRRTSLQLA----RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDE 74
Query: 84 CSTLDPVACNIMISGYIRNDRLNDAREVFDKTPI--KCCVSYTSMIMGFAQNDCWREALE 141
S D +A M+SGY + + AR VF+K P+ + V Y +MI GF+ N+ A+
Sbjct: 75 ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134
Query: 142 VFRDMRILGVIPNEVTLASVISS-SVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMY 200
+F M+ G P+ T ASV++ ++ +C H +K +S L+++Y
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194
Query: 201 CVCSS----LVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK-DVVSW 255
C+S L AR +FDE+ E++ SW M+ G+ K G +L EL E + +V++
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254
Query: 256 GTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVK 315
MI GY+ EAL M R M+ GI ++ +I AC A G Q+H+ +++
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314
Query: 316 AGFDCYDFIQATIIHFYAACGRINLARLQFE-LGIKDHIASWNALIAGFIRNGMIEDARQ 374
+ F +++ Y CG+ + AR FE + KD + SWNAL++G++ +G I +A+
Sbjct: 315 REDFSFHF-DNSLVSLYYKCGKFDEARAIFEKMPAKD-LVSWNALLSGYVSSGHIGEAKL 372
Query: 375 LFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT 434
+F M+++++ SW MISG A+N L+LF M G +P + + A G
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432
Query: 435 LKEGRWAHEYVLNNSITLNDNLSA--AIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNA 492
G+ H +L I + +LSA A+I MYAKCG + A +VF SVS WNA
Sbjct: 433 YCNGQQYHAQLLK--IGFDSSLSAGNALITMYAKCGVVEEARQVF-RTMPCLDSVS-WNA 488
Query: 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVY 552
+I L HG + +Y ++ K+ I+ + IT + VL+ C HAGLVD G +YF SM++VY
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548
Query: 553 NVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERA 612
+ P HY ++DLL R+G+ DAE VI S+P K IW LL+ R+HGN+E+G A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 613 AKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657
A L GL P H + +LLSN++A G+WE+ +RK MRD G+K+
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKK 653
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 175/440 (39%), Positives = 272/440 (61%)
Query: 225 NVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA 284
N ++ FA G +E AR++F+ P +D+VSW +I+GY ++ +A+ +Y+ M +G+
Sbjct: 195 NASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVK 254
Query: 285 PNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQ 344
P+DV ++ L+S+C G + + + + G + ++ ++ CG I+ AR
Sbjct: 255 PDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRI 314
Query: 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMAL 404
F+ K I SW +I+G+ R G+++ +R+LF++M+++DV W+AMI G Q ++ AL
Sbjct: 315 FDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDAL 374
Query: 405 ELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY 464
LF M + KP+EITM+ A + G L G W H Y+ S++LN L +++DMY
Sbjct: 375 ALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMY 434
Query: 465 AKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524
AKCG+I+ A VF+ I+ R + + AII GLA+HGDA+ + ++++ I + IT
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLT--YTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 492
Query: 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584
FIG+LS CCH G++ G YF MKS +N+ P LKHY MVDLLGRAG LE+A+ ++ SM
Sbjct: 493 FIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM 552
Query: 585 PMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644
PM+AD +WG LL R+HGNVE+GE+AAK L L PS VLL +Y +A WEDA
Sbjct: 553 PMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAK 612
Query: 645 SIRKEMRDCGMKRLPGFSGV 664
R+ M + G++++PG S +
Sbjct: 613 RARRMMNERGVEKIPGCSSI 632
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| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 193/545 (35%), Positives = 304/545 (55%)
Query: 114 KTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGV-IPNEVTLASVISSSVHLGGIW 172
K PI CV+ S + A +A+ + G+ +P ++ LAS++ +
Sbjct: 8 KRPI--CVAQ-SFLSKHATKAELSQAVSRLESLTQQGIRLPFDL-LASLLQQCGDTKSLK 63
Query: 173 ECRMLHGLVIKLMIDGF----VIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVML 228
+ + +H L I GF ++S +L+ MY C ++A +FD+M RN+ SWN M+
Sbjct: 64 QGKWIHR---HLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
Query: 229 NGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV 288
+G+ K+G++ AR +F+ +P +DVVSW TM+ GY Q L EAL Y+ GI N+
Sbjct: 121 SGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEF 180
Query: 289 MIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQF-EL 347
L++AC ++ Q H ++ AGF + +II YA CG++ A+ F E+
Sbjct: 181 SFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEM 240
Query: 348 GIKD-HIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALEL 406
+KD HI W LI+G+ + G +E A +LF M +++ SW+A+I+GY + N AL+L
Sbjct: 241 TVKDIHI--WTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDL 298
Query: 407 FHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK 466
F M+ GVKP + T S CA AS +L+ G+ H Y++ ++ N + +++IDMY+K
Sbjct: 299 FRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSK 358
Query: 467 CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI 526
GS+ + VF D+ V WN +I LA HG + L++ D+ K ++ N T +
Sbjct: 359 SGSLEASERVFRICDDKHDCVF-WNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLV 417
Query: 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPM 586
+L+ C H+GLV+ G R+F+SM + + PD +HY C++DLLGRAG ++ I MP
Sbjct: 418 VILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPF 477
Query: 587 KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646
+ D IW +L RIHGN E+G++AA L L P +LLS+IYAD G+WE +
Sbjct: 478 EPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKL 537
Query: 647 RKEMR 651
R M+
Sbjct: 538 RGVMK 542
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| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 159/446 (35%), Positives = 267/446 (59%)
Query: 220 NIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAML 279
N+ N ++ ++ GL+++AR +F+R +DV SW MI GY +++ E++ + M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 280 CDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN 339
+ ++P V ++ ++SAC + ++H + + + ++ +++ YAACG ++
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288
Query: 340 LA-RLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNE 398
+A R+ + +D + SW +++ G++ G ++ AR F+ M RD SW+ MI GY +
Sbjct: 289 IAVRIFRSMKARD-VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSA 458
N +LE+F M AG+ P+E TMVSV A A G+L+ G W Y+ N I + +
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 459 AIIDMYAKCGSINTAFEVFYHI--RDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR 516
A+IDMY KCG A +VF+ + RD+ T W A++ GLA +G +K++ ++
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQRDKFT----WTAMVVGLANNGQGQEAIKVFFQMQDM 463
Query: 517 NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576
+I+ + IT++GVLS C H+G+VD ++F M+S + +EP L HYGCMVD+LGRAG +++
Sbjct: 464 SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKE 523
Query: 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636
A E++R MPM + ++WG LL ASR+H + + E AAK + L+P +G LL NIYA
Sbjct: 524 AYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAG 583
Query: 637 AGRWEDAFSIRKEMRDCGMKRLPGFS 662
RW+D +R+++ D +K+ PGFS
Sbjct: 584 CKRWKDLREVRRKIVDVAIKKTPGFS 609
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| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 130/309 (42%), Positives = 193/309 (62%)
Query: 357 NALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGM-VDAGV 415
NALI +++ + DA ++F ++K+D SW++MISG E+ A++LF M +G+
Sbjct: 243 NALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGI 302
Query: 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFE 475
KP+ + SV A AS G + GRW HEY+L I + ++ AI+DMYAKCG I TA E
Sbjct: 303 KPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALE 362
Query: 476 VFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535
+F IR + +V WNA++ GLA+HG +L+ + ++ K K N +TF+ L+ CCH
Sbjct: 363 IFNGIRSK--NVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHT 420
Query: 536 GLVDLGERYFKSMKS-VYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWG 594
GLVD G RYF MKS YN+ P L+HYGCM+DLL RAG L++A E++++MP+K DV I G
Sbjct: 421 GLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICG 480
Query: 595 TLLAASRIHGNV-EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653
+L+A + G + E+ + S ++ VLLSNI+A RW+D IR+ M+
Sbjct: 481 AILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVK 540
Query: 654 GMKRLPGFS 662
G+ ++PG S
Sbjct: 541 GISKVPGSS 549
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| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 155/435 (35%), Positives = 271/435 (62%)
Query: 231 FAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMI 290
+A G + AR +F+ + +DVV+W TMI+ Y + + EA ++ M + P+++++
Sbjct: 156 YASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMIL 215
Query: 291 VDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQF-ELGI 349
+++SACGR I+ +++ + ++ YA G +++AR F ++ +
Sbjct: 216 CNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSV 275
Query: 350 KDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHG 409
++ S A+++G+ + G ++DA+ +F+ +K+D+ W+ MIS Y +++ P AL +F
Sbjct: 276 RNLFVS-TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE 334
Query: 410 MVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469
M +G+KP+ ++M SV A A+ G L + +W H + N + +++ A+I+MYAKCG
Sbjct: 335 MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGG 394
Query: 470 INTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL 529
++ +VF + R +V W+++I L+MHG+A+ L +++ +++ N++ N +TF+GVL
Sbjct: 395 LDATRDVFEKMPRR--NVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVL 452
Query: 530 STCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD 589
C H+GLV+ G++ F SM YN+ P L+HYGCMVDL GRA L +A EVI SMP+ ++
Sbjct: 453 YGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASN 512
Query: 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649
VVIWG+L++A RIHG +E+G+ AAK + L+P H + VL+SNIYA RWED +IR+
Sbjct: 513 VVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRV 572
Query: 650 MRDCGMKRLPGFSGV 664
M + + + G S +
Sbjct: 573 MEEKNVFKEKGLSRI 587
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| TAIR|locus:2007888 AT1G17630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 185/590 (31%), Positives = 306/590 (51%)
Query: 90 VACNIMISGYIRNDRLNDAREVFDKTPIKCCVS---YTSMIMGFAQNDCWREALEVFRDM 146
+A N+ IS Y R L DAR VF+ + + S++ + + ALE++R M
Sbjct: 91 LAANL-ISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGM 149
Query: 147 RILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206
R G+ + L ++ + +LG CR H VI++ + + + LL +Y +
Sbjct: 150 RQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRM 209
Query: 207 VEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK----DVVSWGTMIDGY 262
+A +LF EM RN +SWNVM+ GF++ E A ++FE + + D V+W +++ +
Sbjct: 210 GDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCH 269
Query: 263 LQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYD 322
Q + + L + M G A + + S C A ++H ++K GF+ Y
Sbjct: 270 SQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYL 329
Query: 323 FIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ-- 380
+ +IH Y G++ A F I SWN+LI F+ G +++A LF+ ++
Sbjct: 330 PSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEM 389
Query: 381 ------KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT 434
K +V +W+++I G + + +LE F M + V N +T+ + A
Sbjct: 390 NHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPA 449
Query: 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAII 494
L GR H +V+ S++ N + A+++MYAKCG ++ VF IRD+ +S WN+II
Sbjct: 450 LNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDL-IS-WNSII 507
Query: 495 CGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNV 554
G MHG A L ++ + + I + VLS C HAGLV+ G F SM + +
Sbjct: 508 KGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGL 567
Query: 555 EPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAK 614
EP +HY C+VDLLGR G L++A E++++MPM+ V + G LL + R+H NV++ E A
Sbjct: 568 EPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIAS 627
Query: 615 SLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
L+ L+P S +LLSNIY+ GRWE++ ++R + +K++ G S +
Sbjct: 628 QLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWI 677
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 579 (208.9 bits), Expect = 1.2e-81, Sum P(3) = 1.2e-81
Identities = 120/320 (37%), Positives = 190/320 (59%)
Query: 357 NALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGM------ 410
N L+ + R G I+ A ++F M+ RD+ +W+ MI+GY +E AL L H M
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 503
Query: 411 VDAG-----VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYA 465
V G +KPN IT++++ + A+ L +G+ H Y + N++ + + +A++DMYA
Sbjct: 504 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYA 563
Query: 466 KCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITF 525
KCG + + +VF I + +V WN II MHG+ + + + + +K N +TF
Sbjct: 564 KCGCLQMSRKVFDQIPQK--NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTF 621
Query: 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585
I V + C H+G+VD G R F MK Y VEP HY C+VDLLGRAG++++A +++ MP
Sbjct: 622 ISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Query: 586 MKADVV-IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644
+ W +LL ASRIH N+E+GE AA++L L+P+ VLL+NIY+ AG W+ A
Sbjct: 682 RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKAT 741
Query: 645 SIRKEMRDCGMKRLPGFSGV 664
+R+ M++ G+++ PG S +
Sbjct: 742 EVRRNMKEQGVRKEPGCSWI 761
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| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 142/341 (41%), Positives = 206/341 (60%)
Query: 327 TIIHFYAACGRINLARLQFE-LGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVY 385
T+I Y G + AR F+ + +D + SWN ++ G+ G +E ++F++M +R+V+
Sbjct: 95 TMISGYIEMGNMLEARSLFDQMPCRD-VMSWNTVLEGYANIGDMEACERVFDDMPERNVF 153
Query: 386 SWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLKEGRWAHEY 444
SW+ +I GYAQN + + L F MVD G V PN+ TM V A A G G+W H+Y
Sbjct: 154 SWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKY 213
Query: 445 VLNNSITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDA 503
D N+ A+IDMY KCG+I A EVF I+ R +S WN +I GLA HG
Sbjct: 214 GETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDL-IS-WNTMINGLAAHGHG 271
Query: 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGC 563
L ++ +++ I + +TF+GVL C H GLV+ G YF SM + +++ P+++H GC
Sbjct: 272 TEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGC 331
Query: 564 MVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623
+VDLL RAG L A E I MP+KAD VIW TLL AS+++ V++GE A + L L+P +
Sbjct: 332 VVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRN 391
Query: 624 GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
+ V+LSNIY DAGR++DA ++ MRD G K+ G S +
Sbjct: 392 PANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWI 432
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C8Q8 | PP394_ARATH | No assigned EC number | 0.5892 | 0.9744 | 0.9459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00019892001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (694 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 665 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-115 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-72 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-54 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 366 bits (941), Expect = e-115
Identities = 197/638 (30%), Positives = 317/638 (49%), Gaps = 99/638 (15%)
Query: 28 SALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL 87
LR C +++G+++H+ + + G E + + N+LI +Y KCG
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--------------- 236
Query: 88 DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMR 147
D V+ AR VFD+ P + C+S+ +MI G+ +N E LE+F MR
Sbjct: 237 DVVS----------------ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 148 ILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLV 207
L V P+ +T+ SVIS+ LG R +HG V+K V + +L+ MY S
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 208 EARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVER 267
EA +F M+ ++ VSW M++G+ K GL P K
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGL-----------PDK----------------- 372
Query: 268 LSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQAT 327
AL Y M D ++P+++ I ++SAC G+++H + + G Y +
Sbjct: 373 ---ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 328 IIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSW 387
+I Y+ C I + A ++F+N+ ++DV SW
Sbjct: 430 LIEMYSKCKCI-------------------------------DKALEVFHNIPEKDVISW 458
Query: 388 SAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447
+++I+G N + AL F M+ +KPN +T+++ A A G L G+ H +VL
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517
Query: 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVF-YHIRDRTTSVSPWNAIICGLAMHGDANLT 506
I + L A++D+Y +CG +N A+ F H +D V WN ++ G HG ++
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD----VVSWNILLTGYVAHGKGSMA 573
Query: 507 LKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566
+++++ + + + + +TFI +L C +G+V G YF SM+ Y++ P+LKHY C+VD
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 567 LLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626
LLGRAG+L +A I MP+ D +WG LL A RIH +VE+GE AA+ + L P+
Sbjct: 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693
Query: 627 RVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664
+LL N+YADAG+W++ +RK MR+ G+ PG S V
Sbjct: 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (631), Expect = 3e-72
Identities = 152/567 (26%), Positives = 252/567 (44%), Gaps = 68/567 (11%)
Query: 100 IRNDRLNDAREVFDKTPI-KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEV-T 157
I DAR D T I K VS S I REALE+F + T
Sbjct: 68 IEVSESKDAR--LDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAST 125
Query: 158 LASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMK 217
+++ + + L I + ++ V + + +L M+ C L++AR LFDEM
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 218 ERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRA 277
ERN+ SW ++ G AG EA ++R
Sbjct: 186 ERNLASWGTIIGGLVDAG-------------------------------NYREAFALFRE 214
Query: 278 MLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGR 337
M DG V ++ A + G Q+H ++K G F+ +I Y+ CG
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 338 INLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQN 397
I EDAR +F+ M ++ +W++M++GYA +
Sbjct: 275 I-------------------------------EDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 398 EQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLS 457
AL L++ M D+GV ++ T + + L+ + AH ++ L+ +
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 458 AAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRN 517
A++D+Y+K G + A VF + + ++ WNA+I G HG ++++ +
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRK--NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDA 577
+ N +TF+ VLS C ++GL + G F+SM + ++P HY CM++LLGR G L++A
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 578 EEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637
+IR P K V +W LL A RIH N+E+G AA+ L G+ P + V+L N+Y +
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 638 GRWEDAFSIRKEMRDCGMKRLPGFSGV 664
GR +A + + ++ G+ P + +
Sbjct: 542 GRQAEAAKVVETLKRKGLSMHPACTWI 568
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-56
Identities = 124/478 (25%), Positives = 210/478 (43%), Gaps = 97/478 (20%)
Query: 24 LALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDS 83
+ + S + C G+++H + K+G + + NSLI +Y G
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG----------- 337
Query: 84 CSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVF 143
+A +VF + K VS+T+MI G+ +N +ALE +
Sbjct: 338 --------------------SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 144 RDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVC 203
M V P+E+T+ASV+S+ LG + LH L + + +V+++ L+ MY
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY--- 434
Query: 204 SSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYL 263
+K ++ A E+F IP KDV+SW ++I G
Sbjct: 435 ----------------------------SKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466
Query: 264 QVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDF 323
R EAL +R ML + PN V ++ +SAC R A G +IH+ +++ G F
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 324 IQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRD 383
+ ++ Y CGR+N A QF N ++D
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQF--------------------------------NSHEKD 553
Query: 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEG-RWAH 442
V SW+ +++GY + + +MA+ELF+ MV++GV P+E+T +S+ CA + SG + +G + H
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMH 500
SIT N A ++D+ + G + A+ F + T + W A++ +H
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN-FINKMPITPDPAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 1e-54
Identities = 142/520 (27%), Positives = 226/520 (43%), Gaps = 76/520 (14%)
Query: 93 NIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVI 152
N M+S ++R L A VF K P + S+ ++ G+A+ + EAL ++ M GV
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 153 PNEVTLASVISSSVHLGGIWECRM---LHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209
P+ T V+ + GGI + +H V++ + V + L+ MY C +V A
Sbjct: 185 PDVYTFPCVLRTC---GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 210 RSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLS 269
R +FD M R+ +SWN MI GY +
Sbjct: 242 RLVFDRMPRRDCISWN-------------------------------AMISGYFENGECL 270
Query: 270 EALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATII 329
E L ++ M + P+ + I +ISAC G ++H +VK GF
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--------- 321
Query: 330 HFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSA 389
++ N+LI ++ G +A ++F+ M+ +D SW+A
Sbjct: 322 ----------------------DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 390 MISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNS 449
MISGY +N P+ ALE + M V P+EIT+ SV A A G L G HE
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 450 ITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKI 509
+ ++ A+I+MY+KC I+ A EVF++I ++ V W +II GL ++ + I
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--DVISWTSIIAGLRLN-NRCFEALI 476
Query: 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG-ERYFKSMKSVYNVEPDLKHYGCMVDLL 568
+ +K NS+T I LS C G + G E + +++ + L + ++DL
Sbjct: 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN--ALLDLY 534
Query: 569 GRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEV 608
R G++ A S + DVV W LL HG +
Sbjct: 535 VRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSM 572
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 8e-39
Identities = 112/489 (22%), Positives = 201/489 (41%), Gaps = 112/489 (22%)
Query: 25 ALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSC 84
ALV A C A ++ + ++ + SG E + ++ N ++ ++ KCG++
Sbjct: 128 ALVEA---CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI--------- 175
Query: 85 STLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFR 144
DAR +FD+ P + S+ ++I G +REA +FR
Sbjct: 176 ----------------------DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 145 DMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCS 204
+M G T ++ +S LG + LH V+K + G +S L++MY C
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 205 SLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQ 264
+ +AR +FD M E+ V+WN ML G+A G E
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-------------------------- 307
Query: 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFI 324
EAL +Y M G++ + +I R Q H+ +++ GF
Sbjct: 308 -----EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 325 QATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDV 384
++ Y+ GR +EDAR +F+ M ++++
Sbjct: 363 NTALVDLYSKWGR-------------------------------MEDARNVFDRMPRKNL 391
Query: 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEY 444
SW+A+I+GY + + A+E+F M+ GV PN +T ++V A SG ++G +
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ- 450
Query: 445 VLNNSITLNDNLS------AAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICG 496
S++ N + A +I++ + G ++ A+ + IR +V+ W A++
Sbjct: 451 ----SMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTA 503
Query: 497 LAMHGDANL 505
+H + L
Sbjct: 504 CRIHKNLEL 512
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 41/335 (12%)
Query: 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQA 326
+L +AL + +M + ++ V L C A EG ++ S + +
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS---------- 115
Query: 327 TIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYS 386
L LG NA+++ F+R G + A +F M +RD++S
Sbjct: 116 -------------HPSLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPERDLFS 154
Query: 387 WSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVL 446
W+ ++ GYA+ + AL L+H M+ AGV+P+ T V L GR H +V+
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 447 NNSITLNDNLSAAIIDMYAKCGSINTAFEVF--YHIRDRTTSVSPWNAIICGLAMHGDAN 504
L+ ++ A+I MY KCG + +A VF RD + WNA+I G +G+
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECL 270
Query: 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG-ERYFKSMKSVYNVEPDLKHYGC 563
L+++ + + ++ + +T V+S C G LG E + +K+ + V D+
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DVSVCNS 328
Query: 564 MVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLA 598
++ + G +AE+V M K D V W +++
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMIS 362
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-25
Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 70/344 (20%)
Query: 23 ELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFD 82
E+ + S L C+ + G ++H L + GL S + N+LI +Y+KC
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC----------- 437
Query: 83 SCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEV 142
++ A EVF P K +S+TS+I G N+ EAL
Sbjct: 438 --------------------KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
Query: 143 FRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIK--LMIDGFVIISTNLLNMY 200
FR M +L + PN VTL + +S+ +G + + +H V++ + DGF+ LL++Y
Sbjct: 478 FRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL--PNALLDLY 534
Query: 201 CVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMID 260
C + A + F+ E+++VSWN++L G+ G +A ELF R
Sbjct: 535 VRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNR-------------- 579
Query: 261 GYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQI-HSIIVKAGFD 319
M+ G+ P++V + L+ AC R+ +GL+ HS+ K
Sbjct: 580 -----------------MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 320 CYDFIQATIIHFYAACGRINLA-RLQFELGIKDHIASWNALIAG 362
A ++ G++ A ++ I A W AL+
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 68/303 (22%), Positives = 140/303 (46%), Gaps = 19/303 (6%)
Query: 369 IEDARQLFNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424
I+ A ++ +Q+ D ++ +IS A++ + + E+FH MV+AGV+ N T +
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT 484
+ A +G + + A+ + + ++ + + A+I + G+++ AF+V ++ T
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 485 TSVSP----WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL 540
+ P A++ A G + ++Y + + NIK + +++C G D
Sbjct: 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 541 GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI---RSMPMKADVVIWGTLL 597
+ MK V+PD + +VD+ G AG L+ A E++ R +K V + +L+
Sbjct: 633 ALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 598 AASRIHGN----VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653
A N +E+ E KS+ L+P+ L++ + + + A + EM+
Sbjct: 692 GACSNAKNWKKALELYED-IKSI-KLRPTVSTMNALITAL-CEGNQLPKALEVLSEMKRL 748
Query: 654 GMK 656
G+
Sbjct: 749 GLC 751
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 54/353 (15%)
Query: 232 AKAGLVELARELFERIPSK----DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPND 287
AK+G V+ E+F + + +V ++G +IDG + ++++A Y M + P+
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 288 VMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFEL 347
V+ LISACG++ A V FD LA ++ E
Sbjct: 543 VVFNALISACGQSGA-----------VDRAFDV-------------------LAEMKAET 572
Query: 348 G-IK-DHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYS----WSAMISGYAQNEQPN 401
I DHI + AL+ G ++ A++++ + + ++ ++ ++ +Q +
Sbjct: 573 HPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 402 MALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAII 461
AL ++ M GVKP+E+ ++ +G L + A E +L ++ L
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK---AFE-ILQDARKQGIKLGTVSY 687
Query: 462 D--MYAKCGSIN--TAFEVFYHIRD---RTTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514
M A + N A E++ I+ R T VS NA+I L L++ S+++
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 515 KRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567
+ + N+IT+ +L D+G K ++P+L C+ L
Sbjct: 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 6e-10
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 353 IASWNALIAGFIRNGMIEDARQLFNNMQKR----DVYSWSAMISGYAQ 396
+ ++N LI G+ + G +E+A +LFN M+KR +VY++S +I G +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT---MVSVFC 427
DV +++ +I GY + + AL+LF+ M G+KPN T ++ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 483 RTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542
R ++S +N ++ A D + L++ +++ +K + + ++STC +G VD
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 543 RYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED---AEEVIRSMPMKADVVIWGTLLAA 599
F M VE ++ +G ++D RAGQ+ A ++RS +K D V++ L++A
Sbjct: 493 EVFHEM-VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 600 SRIHGNVEVGERAAKSLAGLQ-------PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652
G V +RA LA ++ P H L+ A+AG+ + A + + + +
Sbjct: 552 CGQSGAV---DRAFDVLAEMKAETHPIDPDHITVGALMKAC-ANAGQVDRAKEVYQMIHE 607
Query: 653 CGMKRLP 659
+K P
Sbjct: 608 YNIKGTP 614
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 220 NIVSWNVMLNGFAKAGLVELARELFERIPSK----DVVSWGTMIDGY 262
++V++N +++G+ K G VE A +LF + + +V ++ +IDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVIS 163
V+Y ++I G+ + EAL++F +M+ G+ PN T + +I
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 250 KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR 299
DVV++ T+IDGY + ++ EAL ++ M GI PN LI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 194 TNLLNMYCVCSSLVEARSLFDEMKER----NIVSWNVMLNGFAK 233
L++ YC + EA LF+EMK+R N+ +++++++G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGV 151
V+Y S+I G+ + EALE+F++M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534
+N +I G G LK++++++KR IK N T+ ++ C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155
V+Y ++I G + EALE+F++M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE 419
+++ +I G + + ALELF M + G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 355 SWNALIAGFIRNGMIEDARQLFNNMQKRDV 384
++N+LI+G+ + G +E+A +LF M+++ V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 DPVACNIMISGYIRNDRLNDAREVFD---KTPIKC-CVSYTSMIMGFAQ 132
D V N +I GY + ++ +A ++F+ K IK +Y+ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 355 SWNALIAGFIRNGMIEDARQLFNNMQKRDV 384
++N LI G + G +E+A +LF M++R +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGV 415
+++++ISGY + + ALELF M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 222 VSWNVMLNGFAKAGLVELARELFERIPSKDV 252
V++N +++G+ KAG +E A ELF+ + K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPND 287
V++ T+IDG + R+ EAL +++ M GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 348 GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ 380
G+K + ++N LI G R G +++A +L + M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 218 ERNIVSWNVMLNGFAKAGLVELARELFER 246
+ ++V++N +++G +AG V+ A EL +
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 63/273 (23%)
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTL---------DPVACNIMISGYIRNDRLNDAREVF 112
N+LI+ + G + +A FD + + D + ++ +++ A+EV+
Sbjct: 546 NALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 113 ---DKTPIKCCVS-YTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168
+ IK YT + +Q W AL ++ DM+ GV P+EV ++++ + H
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 169 GGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNI----VSW 224
G +D +A + + +++ I VS+
Sbjct: 663 G---------------DLD--------------------KAFEILQDARKQGIKLGTVSY 687
Query: 225 NVMLNGFAKAGLVELARELFERIPS---KDVVSWGTM---IDGYLQVERLSEALTMYRAM 278
+ ++ + A + A EL+E I S + VS TM I + +L +AL + M
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVS--TMNALITALCEGNQLPKALEVLSEM 745
Query: 279 LCDGIAPNDVMIVDLISACGRAMAFGEGLQIHS 311
G+ PN + L+ A R GL + S
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 222 VSWNVMLNGFAKAGLVELARELFERIPSKDVV 253
V++N +++G KAG VE A ELF+ + + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 665 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.34 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.2 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.94 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.72 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.3 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.21 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.9 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.8 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.41 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.36 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.34 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.22 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.19 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.94 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.78 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.74 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.73 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.72 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.38 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.22 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.16 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.14 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.81 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.7 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.66 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.55 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.45 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.12 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.05 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.65 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.59 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.42 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.39 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.29 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.02 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.7 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.5 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.15 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.88 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.98 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.84 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.72 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.69 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.35 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.26 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 91.17 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.03 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.98 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.62 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.34 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.15 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.08 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.99 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 89.98 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.9 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.87 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.74 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.65 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.61 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.61 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.32 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.31 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.91 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.72 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.91 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.78 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.41 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.37 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.2 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.02 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.68 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.52 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.38 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 85.05 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.51 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.32 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.28 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.19 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.15 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.46 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.39 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 83.09 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.59 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.07 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.01 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.86 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.63 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.24 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.84 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.83 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 80.6 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.35 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.31 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 80.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-88 Score=735.04 Aligned_cols=643 Identities=28% Similarity=0.479 Sum_probs=595.7
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC----CCCcchhhH
Q 043580 19 NSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCS----TLDPVACNI 94 (665)
Q Consensus 19 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 94 (665)
..|+..+++.+++++.+.|++++|..+++.|.+.|++|+..+|..++.+|...+.++.+.+++..+. .++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999998654 367789999
Q ss_pred HHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 95 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
++..|++.|+++.|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS----K 250 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 250 (665)
.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|..+||++|.+|++.|+.++|.++|++|.. |
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999853 6
Q ss_pred CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHH-------------------------------HHHHHHhhc
Q 043580 251 DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMI-------------------------------VDLISACGR 299 (665)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------------------------------~~ll~~~~~ 299 (665)
|..+|+.++.++.+.|+.+.+.+++..|.+.|+.||..+| +.+|.+|.+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 6666666666666666666666666666666655555555 555555555
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhhHHHHHHHHHhcCCHHHHHHH
Q 043580 300 AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIASWNALIAGFIRNGMIEDARQL 375 (665)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 375 (665)
.|++++|.++|++|.+.|+.|+..++..++.+|++.|+++.+.++++ .+..|+..+|+.|++.|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666667777777777888888888888888888888888877774 46778889999999999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh
Q 043580 376 FNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN 455 (665)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (665)
|+.|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+.|+.++..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
++++++++|+++|++++|.++|+.+ .+|..+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 9999999999999999999999998 4999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.++...++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999666999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccccC
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 665 (665)
+++++|+++..|..|+++|...|+|++|.++.+.|++.|++|+||+||+|
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-74 Score=623.86 Aligned_cols=600 Identities=19% Similarity=0.259 Sum_probs=561.6
Q ss_pred hhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC
Q 043580 6 FHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCS 85 (665)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (665)
+..++..+. ..+.+|+..+|..++++|...+.+..+.+++..+++.+..++...+|.++.+|++.|+++.|.++|++|.
T Consensus 70 A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~ 148 (857)
T PLN03077 70 ALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP 148 (857)
T ss_pred HHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC
Confidence 344555443 3568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHhcCChhhHHHhhhcCC----CCC-----------------------------------cccHHHH
Q 043580 86 TLDPVACNIMISGYIRNDRLNDAREVFDKTP----IKC-----------------------------------CVSYTSM 126 (665)
Q Consensus 86 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~-----------------------------------~~~~~~l 126 (665)
++|..+||.+|.+|++.|++++|.++|++|. .|| ..+||+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 9999999999999999999999999999874 344 4456777
Q ss_pred HHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 127 IMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 127 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
|.+|++.|+++.|.++|++|. .||..+|+++|.+|.+.|+.++|.++|.+|.+.|+.||..+|+.++.++++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 788888888888888888886 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC----CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCC
Q 043580 207 VEARSLFDEMKE----RNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDG 282 (665)
Q Consensus 207 ~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 282 (665)
+.|.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..||..+|++++.+|++.|++++|+++|++|.+.|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999998874 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHH
Q 043580 283 IAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAG 362 (665)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 362 (665)
+.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|+++.|.++|+....+|..+|+.+|.+
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 439 (665)
|++.|+.++|..+|++|. .||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++..|++.|++++|.
T Consensus 465 ~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999997 56999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH-Hc
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLE-KR 516 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~ 516 (665)
++|+.+ .+|..+|++++.+|++.|+.++|.++|++|... .||..+|+.++.+|.+.|++++|.++|+.|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999886 689999999999999999999999999999886 8999999999999999999999999999999 78
Q ss_pred CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 043580 517 NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWG 594 (665)
Q Consensus 517 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 594 (665)
|+.|+..+|+.++.+|++.|++++|.+++++| .+.||..+|++|+.+|...|+.+.+....+++. ..| +...|.
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 99999999999999999999999999999998 578999999999999999999999888877764 445 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.+.+.|...|+.++|.++.+.|.+.
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHc
Confidence 8888999999999999999999653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=577.09 Aligned_cols=485 Identities=30% Similarity=0.486 Sum_probs=459.6
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcC-CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHH
Q 043580 117 IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILG-VIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTN 195 (665)
Q Consensus 117 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (665)
..+..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 196 LLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 196 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
|+.+|++.|++++|.++|++|.+|| ..+|++++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~-------------------------------~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERN-------------------------------LASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCC-------------------------------eeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999988888888887766 889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhh
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIAS 355 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (665)
++|.+.|+.|+..||..++.+|++.|..+.+.+++..+.+.|+.++. .+
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~-------------------------------~~ 261 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT-------------------------------FV 261 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc-------------------------------ee
Confidence 99999999999999999999999999999999999988887765544 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcH
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTL 435 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 435 (665)
|++|+++|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 55666666666777777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+.|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|+++|++|.+
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 516 RNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
.|+.||..||+.++.+|++.|+.++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.++++++..+|+..+|+.
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~ 499 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999998779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccccC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGVV 665 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 665 (665)
++.+|...|+++.|..+++++.++.|++...|..|+++|.+.|++++|.+++++|.+.|++|.||+||++
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=545.86 Aligned_cols=518 Identities=14% Similarity=0.143 Sum_probs=382.9
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCc-----chhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHH
Q 043580 55 ESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP-----VACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMG 129 (665)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 129 (665)
.++...|..++..|++.|++++|.++|++|..++. ..++.++..|.+.|.+++|..+|+.|..|+..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44455555566666666666666666666654332 2334445556666666666666666666666666666666
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 209 (665)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+.+.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhccC----CCcccHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeeeHHHHHHHHhhcCChhHHHHHHHHHH
Q 043580 210 RSLFDEMKE----RNIVSWNVMLNGFAKAGLVELARELFERIP------SKDVVSWGTMIDGYLQVERLSEALTMYRAML 279 (665)
Q Consensus 210 ~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 279 (665)
.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++|+.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666642 566666666666666666666666666663 3666777777777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhh
Q 043580 280 CDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIAS 355 (665)
Q Consensus 280 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~ 355 (665)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+++.|.++++ .++.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777776664 356788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQ----KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS 431 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 431 (665)
|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8888888888889999999999885 579999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 043580 432 SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYS 511 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 511 (665)
.|+++.|.+++..|.+.|+.|+..+|++++.++. +++++|..+.+.+..- +. .......+..+.|+.+|+
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f-------~~-g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF-------DS-GRPQIENKWTSWALMVYR 836 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh-------hc-cccccccchHHHHHHHHH
Confidence 9999999999999999999999999999987654 2466665554433321 10 011112233467999999
Q ss_pred HHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 512 DLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 512 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+|++.|+.||..||+.++.++++.+..+.+..+++.|... +..|+..+|+++++++.+. .++|..++++|.
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999998888999999999999988766 7778899999999998432 468999999996
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-64 Score=532.95 Aligned_cols=541 Identities=15% Similarity=0.197 Sum_probs=340.3
Q ss_pred chHHHHHHhhcCC--CCcchhhHHHHHHHhcCChhhHHHhhhcCCCCCc-----ccHHHHHHHHhhcCChHHHHHHHHHh
Q 043580 74 ISQAKSMFDSCST--LDPVACNIMISGYIRNDRLNDAREVFDKTPIKCC-----VSYTSMIMGFAQNDCWREALEVFRDM 146 (665)
Q Consensus 74 ~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m 146 (665)
...+....+.... ++...|..++..+++.|++++|.++|++|..++. ..++.++.+|.+.|..++|..+|+.|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 3444455555543 4677899999999999999999999999986654 45677888899999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH
Q 043580 147 RILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV 226 (665)
Q Consensus 147 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 226 (665)
.. ||..+|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.+
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------ 502 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------ 502 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------
Confidence 74 99999999999999999999999999999999999999999999999999999999999999998522
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhH
Q 043580 227 MLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEG 306 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 306 (665)
..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 503 ---------------------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 503 ---------------------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred ---------------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 12335555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHHHHHH----hccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcC
Q 043580 307 LQIHSIIVK--AGFDCYDFIQATIIHFYAACGRINLARLQFE----LGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQ 380 (665)
Q Consensus 307 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 380 (665)
.+++.+|.+ .|+.|+..+++.++.+|++.|++++|.++|+ .++.|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555554 2333333333333333333333333332222 1223334444444444444444444445555554
Q ss_pred ----CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 043580 381 ----KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNL 456 (665)
Q Consensus 381 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (665)
.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 2355555556666655555566666666655555555555666666666666666666656655555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
|+.++.+|++.|++++|.++|++|... .||..+|+.++.+|++.|+.+.|.+++++|.+.|+.||..+|+.++..|.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~- 800 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL- 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence 555555555555555555555555543 45555555555555555555555555555555555555555555554332
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP---MKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
++++++.++.+.+.. +.+ .......+..++|..+|++|. ..|+..+|..++.++.+.++.+.+..
T Consensus 801 -~~y~ka~~l~~~v~~---f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 801 -RRFEKACALGEPVVS---FDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred -HHHHHHhhhhhhhhh---hhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 123333322222211 000 000111123456778888776 55888888888877777777777777
Q ss_pred HHHHHh-ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCC
Q 043580 612 AAKSLA-GLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 612 ~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 660 (665)
+++.+. .-.+.+..+|..|+..+.+ ..++|..++++|...|+.+...
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 776653 2233444556677666522 1357888888888888766553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=529.65 Aligned_cols=471 Identities=22% Similarity=0.354 Sum_probs=436.7
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhcCCchHHHHHHhhcC----CCCcchhhH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSG-LESNTFIQNSLINLYAKCGLISQAKSMFDSCS----TLDPVACNI 94 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 94 (665)
.++..+++.+|.++.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..+. .||+.+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3445689999999999999999999999999875 78999999999999999999999999998875 479999999
Q ss_pred HHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 95 MISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 95 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
++..|++.|+++.|.++|++|.+||..+||+++.+|++.|++++|.++|++|.+.|+.||..||..++.+|...|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVS 254 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (665)
.+++..+.+.|+.+|..++++|+.+|+++|++++|.++|+.|.++| +.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-------------------------------~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-------------------------------TVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC-------------------------------hhH
Confidence 9999999999999999999999999999888888888888877666 788
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 043580 255 WGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA 334 (665)
Q Consensus 255 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (665)
||+|+.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++++..
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~----------- 361 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV----------- 361 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-----------
Confidence 999999999999999999999999999999999999999999999999999999999999887665554
Q ss_pred cCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 335 CGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
+|++|+++|++.|++++|.++|+.|.++|..+||.||.+|++.|+.++|+++|++|.+.|
T Consensus 362 --------------------~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 362 --------------------ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred --------------------ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555556666666666666789999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHH
Q 043580 415 VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAI 493 (665)
Q Consensus 415 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 493 (665)
+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++.. .|+..+|+.|
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~-~p~~~~~~~L 500 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF-KPTVNMWAAL 500 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC-CCCHHHHHHH
Confidence 999999999999999999999999999999975 69999999999999999999999999999998864 4889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
+.+|...|+.+.|..+++++.+. .| +..+|..++..|++.|++++|.++++.|.+. |+.+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999999764 55 5679999999999999999999999999998 8765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=352.00 Aligned_cols=619 Identities=12% Similarity=0.034 Sum_probs=319.8
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcc---hhhHHHH
Q 043580 21 DYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPV---ACNIMIS 97 (665)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~ 97 (665)
.+..++..+...+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.++. .+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 445666667777777777788877777777665 223333434444555666777777666665543322 1222333
Q ss_pred HHHhcCChhhHHHhhhcCCC---CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 98 GYIRNDRLNDAREVFDKTPI---KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 98 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
.+...|++++|...|++..+ .+...+..+...+.+.|++++|...++.+.+.+ ..+...+..+...+...|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44555666666666554431 223344455555555555555555555555442 22344555555555555555555
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC------------------------------------
Q 043580 175 RMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE------------------------------------ 218 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------------ 218 (665)
.++++.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 55555554433 12333444444455555555555555544442
Q ss_pred -CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043580 219 -RNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLI 294 (665)
Q Consensus 219 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 294 (665)
++..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 1223444444444444444444444444332 122333444444444455555555555444421 22334444444
Q ss_pred HHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHHH
Q 043580 295 SACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
..+.+.|+.++|...+..+.+.+ +.+...+..++..+...|+++.|...++... +.+...|..+...+...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44444555555555555444432 2233334444555555555555555554322 2334455555555555555555
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 372 ARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 372 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
|...|+.+.+ .++..+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555554432 133445555555555555555555555555432 223444455555555555555555555555444
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
. +.+...+..+...+...|++++|...|+.+....|+..++..++.++...|++++|.+.++++.+.. +.+...+..+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3 2333444555555555555666655555555554444555555555555566666665555555543 3344555555
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN 605 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 605 (665)
...|...|++++|.++|+++.+. .| ++.+++.++..+...|+ .+|+.+++++. .+.++..+..+..++...|+
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 55555556666666666655532 33 45555555555555555 55555555543 11234445555555566666
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
+++|...++++++.+|.++.++..++.+|.+.|++++|.+++++++
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666666656666666666666666666665554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=346.83 Aligned_cols=626 Identities=12% Similarity=0.032 Sum_probs=447.4
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHH
Q 043580 19 NSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIM 95 (665)
Q Consensus 19 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l 95 (665)
.+++...+..+...+...|+++.|...++..++.+ +.+..++..++..+...|++++|...++.+.+.+ +..+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 35566788888889999999999999999999876 5677889999999999999999999999886532 2333333
Q ss_pred HHHHHhcCChhhHHHhhhcCCCCC---cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChH
Q 043580 96 ISGYIRNDRLNDAREVFDKTPIKC---CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIW 172 (665)
Q Consensus 96 l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 172 (665)
...+.+.|++++|...|++..+.+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+.+
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 445668899999999999876433 2345556677889999999999999998763 335667788888999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043580 173 ECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--R-NIVSWNVMLNGFAKAGLVELARELFERIPS 249 (665)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (665)
.|...+..+.+.. +.+...+..+...+.+.|++++|.++|+.+.+ | +...+..+...+...|++++|.+.|+.+.+
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999999998765 44677888899999999999999999998875 3 334566667777777888877777776543
Q ss_pred C---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCC--------
Q 043580 250 K---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGF-------- 318 (665)
Q Consensus 250 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------- 318 (665)
. +......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...++++.+...
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 504 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 1 2223344445555555555555555555442 233444445555555555555555555555444321
Q ss_pred -------------------------CCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHH
Q 043580 319 -------------------------DCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIE 370 (665)
Q Consensus 319 -------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 370 (665)
+.+...+..+...+.+.|+.+.|...+++.. +.+...+..++..+...|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 2233344444455555555555555554322 222334455555666666666
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 043580 371 DARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447 (665)
Q Consensus 371 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (665)
+|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666665542 244566666666666777777777776666542 23344555666666667777777777766665
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 043580 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI 526 (665)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 526 (665)
.. +.+...+..++..+...|++++|.++++.+... +.+...+..+...+...|++++|...++++... .|+..++.
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 43 233456666677777777777777777777665 334556777777788888888888888888775 45556777
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 603 (665)
.++.++.+.|++++|.+.++++.+. .| +...+..++..|...|++++|.+.++++. .++++..+..++..+...
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888753 55 78888889999999999999999999886 345778889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
|+ .+|+..+++++++.|+++..+..++.+|...|++++|.++++++++.+..
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99 88999999999999999999999999999999999999999999987654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-28 Score=272.31 Aligned_cols=615 Identities=12% Similarity=0.018 Sum_probs=462.8
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcch---h-------
Q 043580 23 ELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVA---C------- 92 (665)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~------- 92 (665)
...+....+.+-..++.+.|.+.+.+++... +.++.++..++..+.+.|+.++|.+.++++.+.+|.. .
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 3447778889999999999999999999886 5578888999999999999999999999997643332 1
Q ss_pred ---------hHHHHHHHhcCChhhHHHhhhcCCCCCcccHH----HHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHH
Q 043580 93 ---------NIMISGYIRNDRLNDAREVFDKTPIKCCVSYT----SMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLA 159 (665)
Q Consensus 93 ---------~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 159 (665)
..+.+.+.+.|++++|...|++..+.+..... .........|+.++|.+.|+++.+.. +-+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22234678899999999999987643322211 11122234589999999999999874 23566778
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCC----------------c---hhHHHHHHHHHhccCCHHHHHHHHhhccC--
Q 043580 160 SVISSSVHLGGIWECRMLHGLVIKLMIDG----------------F---VIISTNLLNMYCVCSSLVEARSLFDEMKE-- 218 (665)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 218 (665)
.+...+...|+.++|...++++.+..... + ...+...+..+-.......|...+.....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 88888999999999999999986542110 0 01111112222222234445555544332
Q ss_pred CCccc-HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC-CHHHH---
Q 043580 219 RNIVS-WNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP-NDVMI--- 290 (665)
Q Consensus 219 ~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~--- 290 (665)
.+... .......+...|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+..-.. +...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 12111 12335567789999999999998765 3 66788899999999999999999999998743211 11111
Q ss_pred ---------HHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC--C-chhhHHH
Q 043580 291 ---------VDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK--D-HIASWNA 358 (665)
Q Consensus 291 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ 358 (665)
......+.+.|++++|...++++.+.. +.+...+..+..++...|+++.|++.|++.+. | +...+..
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 122345678899999999999999875 44566777889999999999999999987653 3 3456666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQKRD------------VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKP-NEITMVSV 425 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 425 (665)
+...+. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~L 501 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRL 501 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 666664 567899999998765321 234556777888999999999999999985 44 45566778
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-----------chHHHHH
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-----------SPWNAII 494 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~ 494 (665)
...+...|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+.....+. ..+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 889999999999999999998754 2344445555566788999999999999876542111 1123456
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 573 (665)
..+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+ ..| +...+..++.+|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 778899999999999872 255667788889999999999999999999995 478 78999999999999999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHH
Q 043580 574 LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 574 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~ 645 (665)
+++|++.++.+. ..| +...+..+..++...|++++|..+++++++..|+++. .+..++.++...|++++|++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999876 334 5667788888999999999999999999998877654 45677999999999999999
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
.|++++.
T Consensus 733 ~y~~Al~ 739 (1157)
T PRK11447 733 TYKDAMV 739 (1157)
T ss_pred HHHHHHh
Confidence 9999975
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-26 Score=253.34 Aligned_cols=593 Identities=9% Similarity=0.015 Sum_probs=434.1
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchH----------------HHHHHHHHhcCCchHHHHHHhh
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ----------------NSLINLYAKCGLISQAKSMFDS 83 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~ 83 (665)
|-+...+..+.+.+...|+.++|.+.++.+.+.. +.+.... ..+...+...|++++|.+.|+.
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3356778888999999999999999999999987 3333222 3334578899999999999999
Q ss_pred cCCCCcchhhH---HHHH-HHhcCChhhHHHhhhcCCC--C-CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCC---
Q 043580 84 CSTLDPVACNI---MISG-YIRNDRLNDAREVFDKTPI--K-CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIP--- 153 (665)
Q Consensus 84 ~~~~~~~~~~~---ll~~-~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--- 153 (665)
..+.++..... .... ....|+.++|++.|+++.. | +...+..+...+...|+.++|+..++++.+.....
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 88754433221 1111 2245999999999998874 3 44578888899999999999999999987642110
Q ss_pred -------------CHh---hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhcc
Q 043580 154 -------------NEV---TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMK 217 (665)
Q Consensus 154 -------------~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 217 (665)
+.. .+...+..+........+...+.........|+... ......+...|++++|+..|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 111112222222233445555554443333333221 234567788999999999999887
Q ss_pred C--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee---eHH------------HHHHHHhhcCChhHHHHHHHH
Q 043580 218 E--R-NIVSWNVMLNGFAKAGLVELARELFERIPS--KDVV---SWG------------TMIDGYLQVERLSEALTMYRA 277 (665)
Q Consensus 218 ~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~------------~l~~~~~~~~~~~~a~~~~~~ 277 (665)
+ | +...+..+...+.+.|++++|+..|++..+ |+.. .|. .....+.+.|++++|+..|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5 4 556788889999999999999999998765 3221 121 224467789999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCc-----
Q 043580 278 MLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDH----- 352 (665)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 352 (665)
..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+. .++.++|...++......
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 99852 3355667778888999999999999999999875 334555666677664 467888988876433211
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 353 -------IASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 353 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
...+..+...+...|++++|.+.|++..+. ++..+..+...|.+.|++++|...++++.+.. +.+...+
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 223455677888999999999999987643 55677889999999999999999999998743 2233334
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHH
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLND---------NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAI 493 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 493 (665)
..+...+...++.++|...++.+......+.. ..+..+...+...|+.++|..+++. .+.+...+..+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~L 609 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHH
Confidence 44445567789999999988876433222221 1223456778899999999999882 34566678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+...|++++|+..+++..+.. +.+...+..++..+...|++++|.+.++.+. ...| +..++..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCC
Confidence 999999999999999999999864 4577889999999999999999999999887 4467 5677788899999999
Q ss_pred ChHHHHHHHHhCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCCc
Q 043580 573 QLEDAEEVIRSMPMK-----A---DVVIWGTLLAASRIHGNVEVGERAAKSLAG---LQPSHGP 625 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~ 625 (665)
++++|.++++++... | +...+..+...+...|+.++|+..|++++. +.|..+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 999999999998621 1 224566778889999999999999999974 4455444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-24 Score=229.78 Aligned_cols=594 Identities=10% Similarity=0.015 Sum_probs=412.4
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcc--hhhHHHHHHHhcCChhhHHHh
Q 043580 34 SAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPV--ACNIMISGYIRNDRLNDAREV 111 (665)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~ 111 (665)
...|++++|...|+..++.. |-+..++..|...|.+.|+.++|+..+++..+.++. .|..++. .-+++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHH
Confidence 33499999999999999987 444889999999999999999999999999876553 3333332 22899999999
Q ss_pred hhcCCC--C-CcccHHHHHHH--------HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHH-HHHHhccCChHHHHHHHH
Q 043580 112 FDKTPI--K-CCVSYTSMIMG--------FAQNDCWREALEVFRDMRILGVIPNEVTLASV-ISSSVHLGGIWECRMLHG 179 (665)
Q Consensus 112 ~~~~~~--~-~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~ 179 (665)
++++.. | +..++..+... |.+. ++|.+.++ .......|+..+.... .+.+...++++.+...+.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 998863 3 34455555555 5554 66666666 4444444455555555 899999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhc-cCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCee
Q 043580 180 LVIKLMIDGFVIISTNLLNMYCV-CSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS-----KDVV 253 (665)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~ 253 (665)
.+.+.++. +......|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.. |...
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 99999743 35556667778887 466 8888887765556788899999999999999999999998863 1111
Q ss_pred e------------------------------HHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccch
Q 043580 254 S------------------------------WGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAF 303 (665)
Q Consensus 254 ~------------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 303 (665)
+ .-.++..+.+.++++.+.++. ++.|.......-..+....+..
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCch
Confidence 1 112245556666666554441 2455544422222222344677
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC------CchhhHHHHHHHHHhcCC---HHHHHH
Q 043580 304 GEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK------DHIASWNALIAGFIRNGM---IEDARQ 374 (665)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~a~~ 374 (665)
.++...+..+.+.. +-+......+.....+.|+.++|..+++.... .+.....-++..|.+.+. ..+++.
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 77888787777653 44666777777788899999999999986554 122334467777777766 333333
Q ss_pred HHh-------------------------hcCC---C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 375 LFN-------------------------NMQK---R--DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 375 ~~~-------------------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
+-. .... . +...|..+..++.. +++++|+..+.+.... .|+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHH
Confidence 311 1111 1 34456666666665 6777788877776653 455544444
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHHHHHHHHhcCCh
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNAIICGLAMHGDA 503 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 503 (665)
+...+...|++++|...++.+... +|+......+...+.+.|++++|...++......|+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 445556778888888888776443 3333445556677778888888888888777753332 2222333344455888
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
++|...+++..+. .|+...+..+...+.+.|++++|+..+++.. ...| +...+..+..++...|++++|+..++
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888774 4567777778888888888888888888887 4477 67777778888888888888888887
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 583 SMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 583 ~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.. ..| ++..+..+..++...|++++|+..+++++++.|+........+++.....+++.|.+.+++.-.-+
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 765 334 567778888888888888888888888888888888888888888888888888888777665433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-24 Score=230.27 Aligned_cols=571 Identities=10% Similarity=-0.006 Sum_probs=397.7
Q ss_pred HHHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhcCCC--CCcccHHHHHHHHhhcCChHHHH
Q 043580 66 NLYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDKTPI--KCCVSYTSMIMGFAQNDCWREAL 140 (665)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~ 140 (665)
..+...|++++|...|++..+. ++..+..+...|.+.|++++|+..+++..+ |+...|..++..+ +++++|.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 3344559999999999998764 345677888999999999999999998874 4334444444333 8899999
Q ss_pred HHHHHhHHcCCCCCHhhHHHHHHHH-----hccCChHHHHHHHHHHHHHhcCCchhHHHHH-HHHHhccCCHHHHHHHHh
Q 043580 141 EVFRDMRILGVIPNEVTLASVISSS-----VHLGGIWECRMLHGLVIKLMIDGFVIISTNL-LNMYCVCSSLVEARSLFD 214 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 214 (665)
.+++++.+.... +...+..+.... ......+++.+.++ .......|+..+.... .+.|.+.|+++.|++++.
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999987432 344454444440 12334477777776 4444444455544444 899999999999999999
Q ss_pred hccCCCc---ccHHHHHHHHHh-cCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCC-CCHHH
Q 043580 215 EMKERNI---VSWNVMLNGFAK-AGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA-PNDVM 289 (665)
Q Consensus 215 ~~~~~~~---~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 289 (665)
.+.+.+. .....+..+|.. .++ +++..+++...+.+...+..+...|.+.|+.++|..+++++...-.. |...+
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9987432 235556667777 366 88888877655567888999999999999999999999998754322 55555
Q ss_pred HHHHHHHhhcccchhhHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHH------------------------
Q 043580 290 IVDLISACGRAMAFGEGLQIHSI-IVKAGFDCYDFIQATIIHFYAACGRINLARLQ------------------------ 344 (665)
Q Consensus 290 ~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~------------------------ 344 (665)
+..++.-..... ..+..-+.. ... .-....-.++..+.+.+.++.++++
T Consensus 286 ~~~~l~r~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 286 WLYLLSKYSANP--VQALANYTVQFAD----NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHhccCch--hhhccchhhhhHH----HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 544433222110 000000000 000 0000111123334444444433333
Q ss_pred -----HHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCC---chHHHHH-
Q 043580 345 -----FELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQK-R-----DVYSWSAMISGYAQNEQ---PNMALEL- 406 (665)
Q Consensus 345 -----~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~- 406 (665)
++...+ .+.....-+.-...+.|+.++|.++|+.... + +.....-++..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 222221 1333344444456788999999999998765 2 22344567777777766 3333333
Q ss_pred ---------------------HHHHHH-CCC-CC--ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 043580 407 ---------------------FHGMVD-AGV-KP--NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAII 461 (665)
Q Consensus 407 ---------------------~~~m~~-~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (665)
++.... .+. ++ +...+..+..++.. ++.++|...+....... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 111111 112 22 44556666666655 78888999888777654 4544444455
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
..+...|++++|...|+++...+|+...+..+...+...|+.++|...+++..+.. +++...+..+.......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 66678999999999999987776666777788888999999999999999999864 33334444444455567999999
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
...+++..+ +.|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|++++|+..+++++++
T Consensus 596 l~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999984 57888899999999999999999999999986 445 6778888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+++..+..++.++...|++++|+..++++.+...
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=184.15 Aligned_cols=436 Identities=13% Similarity=0.118 Sum_probs=338.7
Q ss_pred HHHHHHhccCCHHHHHHHHhhccCCCcc---cHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCCh
Q 043580 195 NLLNMYCVCSSLVEARSLFDEMKERNIV---SWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERL 268 (665)
Q Consensus 195 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 268 (665)
.|..-..+.|++..|++....+-+.|.. ..-.+-..+.+..+.+....--....+ .-..+|+.+...+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 4555566778888888877666543321 122222445555555544333222222 2456788888888889999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCChHHHHHHHH
Q 043580 269 SEALTMYRAMLCDGIAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDF-IQATIIHFYAACGRINLARLQFE 346 (665)
Q Consensus 269 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 346 (665)
++|+.+|+.+.+ ++| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ....+.......|+.++|...+.
T Consensus 133 ~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999887 455 45678888888888899999998888887753 3333 33455566667888888888887
Q ss_pred hccC--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-
Q 043580 347 LGIK--DH-IASWNALIAGFIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE- 419 (665)
Q Consensus 347 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 419 (665)
+.+. |. ...|+.|...+-..|+...|+..|++..+-|+ ..|-.|...|...+.++.|+..|.+... ..|+.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcch
Confidence 6654 33 34688888888999999999999998876654 4788889999999999999999988877 45554
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHH
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLA 498 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 498 (665)
..+..+...|...|.++.|+..+++.++... .-+..|+.+..++...|+..+|.+.+.+.....| ...+.+.|...+.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5677777778889999999999999887542 2246788899999999999999999999888744 4678899999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 576 (665)
..|.++.|..+|....+- .|. ...++.|...|-+.|++++|+..+++.. .+.|+ ...|+.+...|...|+.+.
T Consensus 366 E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999998884 554 4578899999999999999999999998 67895 7789999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 577 AEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 577 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
|.+.+.++. .+| -.+..+.|...|...|+..+|+..|+.++.+.|+.+.++..|..++.-..+|.+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999998876 556 467788999999999999999999999999999999998888777655555444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=183.76 Aligned_cols=423 Identities=11% Similarity=0.109 Sum_probs=347.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
...+..-..+.|++++|++.-...-.. +....-.+-..+.+..+.+.....-....+. .+--..+|+.+...+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 445566677889999999877665542 2223333344566666676655544433332 334568899999999999
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch--hhHH-HHHHHHHhcCCHHHHHHHHh
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI--ASWN-ALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~l~~~~~~~~~~~~a~~~~~ 377 (665)
|++++|+..++.+++.. +.....+..+..++...|+.+.|...|...++.++ .... .+...+-..|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999875 44567788899999999999999999987766554 3333 34455566899999999888
Q ss_pred hcCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 043580 378 NMQKRD---VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN 453 (665)
Q Consensus 378 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 453 (665)
+..+.+ .+.|+.|...+-..|+...|+..|++..+ +.|+ ...|..+...+...+.++.|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 766443 46899999999999999999999999987 4565 3578888889999999999998888876643 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+.-.|..+|.++-|++.+++..+..|+ +..|+.|..++...|+..+|...+.+..... +.-....+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456677888899999999999999999998666 5689999999999999999999999999863 44567899999999
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A 609 (665)
...|.++.|..+|.... .+.| -....+.|...|-.+|++++|+..++++. .+|+ ...|+.++..|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999988 5688 47789999999999999999999999986 6674 68899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..+.+++.++|.-..++..|+.+|...|+..+|+.-|+.++....
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999987543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-20 Score=182.93 Aligned_cols=535 Identities=12% Similarity=0.079 Sum_probs=341.1
Q ss_pred HHHHHHHhhcc--CChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHH---
Q 043580 26 LVSALRYCSAH--IAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYI--- 100 (665)
Q Consensus 26 ~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~--- 100 (665)
...+.++|..- +++..|..+|...+......-+...-....++.+.|+.+.|...|+...+.||...++++....
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 34466666654 5999999999998876543333333445678889999999999999999988877766654322
Q ss_pred ---hcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCC--CCHhhHHHHHHHHhccCChH
Q 043580 101 ---RNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVI--PNEVTLASVISSSVHLGGIW 172 (665)
Q Consensus 101 ---~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~ 172 (665)
....+..+..++...- ..|++..+.|...|...|+++.++++...+...... .-+..|..+.+++-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 2345566677776543 457889999999999999999999999998875311 12345788899999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--CC-cccHHHHHHHHHhcC----CHHHHHHHHh
Q 043580 173 ECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--RN-IVSWNVMLNGFAKAG----LVELARELFE 245 (665)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~----~~~~a~~~~~ 245 (665)
.|..++.+..+......+..+..|...|.+.|+++.+...|+.+.+ || ..+...+...|...+ ..+.|..++.
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999998888776554455566788999999999999999998885 33 345555555555543 4577777777
Q ss_pred hCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh--
Q 043580 246 RIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAM----LCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA-- 316 (665)
Q Consensus 246 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 316 (665)
+..++ |...|-.+...+-. ++...++..|... ...+-.+.+...+.+.......|+++.|...+......
T Consensus 405 K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 76654 34455555544443 3444446665543 34555567777777777778888888888877776654
Q ss_pred -CCCCch------hHHHHHHHHHHhcCChHHHHHHHHhccCCchh---hHHHHHHHHHhcCCHHHHHHHHhhcC---CCC
Q 043580 317 -GFDCYD------FIQATIIHFYAACGRINLARLQFELGIKDHIA---SWNALIAGFIRNGMIEDARQLFNNMQ---KRD 383 (665)
Q Consensus 317 -~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~ 383 (665)
...++. .+--.+...+-..++.+.|.+++...+...+. .|.-+.......+...+|...+.... ..+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 112222 12334445555555666666655544432222 12222211122244555555555443 224
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAG-VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
+..+..+...+.+...+..|.+-|....+.- ..+|..+...|.+.|... +....-.|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~~rn~---------- 621 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA------------LHNPSRNP---------- 621 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH------------hcccccCh----------
Confidence 5555555555555555555555444443321 123333333333322110 00000000
Q ss_pred HHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
-...+..++|+++|.++... +.+..+-|.+.-.++..|++..|..+|.+..+.. ..+..+|..+.++|...|++-.|
T Consensus 622 -ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 -EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 11234567777777777765 4556666777777788888888888888887764 34556677788888888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 542 ERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+++|+...+.+.-.-++.+...|.+++.+.|++.+|.+.+..+.
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888887765544577778888888888888888887766654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-20 Score=194.51 Aligned_cols=253 Identities=13% Similarity=0.066 Sum_probs=205.2
Q ss_pred CCCchHHHHHHHHHHHCC-CCCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 397 NEQPNMALELFHGMVDAG-VKPN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999988765 2343 3456667777788999999999999988753 223456777888899999999999
Q ss_pred HHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 475 EVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 475 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
..|+++... +.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 999998877 4456788889999999999999999999999864 44567788888899999999999999999985
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VV-------IWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
..| ++..++.+..++...|++++|+..+++.. ..|+ .. .++..+..+...|++++|..+++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 367 68889999999999999999999999865 3332 11 12222223445799999999999999999999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 624 GPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 624 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...+..++.++...|++++|++.|+++.+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-18 Score=172.38 Aligned_cols=603 Identities=10% Similarity=0.071 Sum_probs=320.1
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC------CCcc-----hhhHHHHHHHhcC------
Q 043580 41 QGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST------LDPV-----ACNIMISGYIRND------ 103 (665)
Q Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~ll~~~~~~~------ 103 (665)
++-+++..+...+ ....+|......|.+.|+.++...+++.... .++. .++.+...+...+
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555554 2334566677778888888888888877661 1111 1111111121111
Q ss_pred -----ChhhHHHhhhcCC-----CCCcccHHHHHHHHhhcC--ChHHHHHHHHHhHHcCCCCCHhhHHHHHHHH--hccC
Q 043580 104 -----RLNDAREVFDKTP-----IKCCVSYTSMIMGFAQND--CWREALEVFRDMRILGVIPNEVTLASVISSS--VHLG 169 (665)
Q Consensus 104 -----~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~ 169 (665)
-+..|..+|+... .+....+.. ..|...| +++.|...|....+.. ++|.-. .+.+++ ...+
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~--LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQS-PDNILA--LLGKARIAYNKK 178 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhC-CcchHH--HHHHHHHHhccc
Confidence 1223333333211 111111111 1112222 2466666666665542 223222 233443 3555
Q ss_pred ChHHHHHHHHHHHHHhc--CCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHH------HhcCCHHHHH
Q 043580 170 GIWECRMLHGLVIKLMI--DGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGF------AKAGLVELAR 241 (665)
Q Consensus 170 ~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~------~~~~~~~~a~ 241 (665)
++..|..+|.......+ .+|+. -.+-..+.+.|+.+.|+..|....+-|+..-++++... .....++.+.
T Consensus 179 dY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence 66677777766555543 33332 22334455666666666666666654443222222111 1223344455
Q ss_pred HHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 043580 242 ELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIA--PNDVMIVDLISACGRAMAFGEGLQIHSIIVKA 316 (665)
Q Consensus 242 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 316 (665)
.++...-. .|+...+.|...|.-.|++..++.+...+...-.. .-...|-.+.+++...|++++|...|.+..+.
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 55444332 35556666666666666666666666666543210 11233555666666666666666666665554
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcC----CHHHHHHHHhhcCCC---Ccch
Q 043580 317 GFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNG----MIEDARQLFNNMQKR---DVYS 386 (665)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~---~~~~ 386 (665)
........+..+..++.+.|+.+.+...|++.. +.+..+...|...|...+ ..+.|..++....++ |...
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 433323334455666666666666666665433 223334444444444443 334444444444333 2333
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc---CCCCCh-----
Q 043580 387 WSAMISGYAQNEQPNMALELFHGM----VDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN---SITLND----- 454 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----- 454 (665)
|-.+...+-. +++..++.+|... ...+-.+.....+.+.......|++..|...|+..... ...++.
T Consensus 417 ~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 417 WLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 3333333332 2222224443332 22333344445555555555555555555555554332 111111
Q ss_pred -hHHHHHHHHHHhcCCHHHH----------------------------------HHHHHHchhC-CCCcchHHHHHHHHH
Q 043580 455 -NLSAAIIDMYAKCGSINTA----------------------------------FEVFYHIRDR-TTSVSPWNAIICGLA 498 (665)
Q Consensus 455 -~~~~~l~~~~~~~~~~~~A----------------------------------~~~~~~~~~~-~~~~~~~~~l~~~~~ 498 (665)
.+-..+..++-..++.+.| ...++.+... ..++..+..+...+.
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHL 575 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 1111233333334444444 4444444443 333444444444555
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHhcc------------cChHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNI-KLNSITFIGVLSTCCH------------AGLVDLGERYFKSMKSVYNVEP-DLKHYGCM 564 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 564 (665)
+...+..|.+-|....+.-. .+|..+...|.+.|.. .+..++|+++|.++. ...| |...-|-+
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGI 652 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGI 652 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchhhhccch
Confidence 55555555554444443211 2455555555554433 234667888888877 4578 88888999
Q ss_pred hhHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCCh
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ--PSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~ 640 (665)
.-+++..|++.+|..+|.+... .....+|..+..+|...|++-.|+++|+..+... .+++.....|+.++.+.|++
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 9999999999999999988862 2456789999999999999999999999987533 34566678899999999999
Q ss_pred hHHHHHHHHHHhCCCc
Q 043580 641 EDAFSIRKEMRDCGMK 656 (665)
Q Consensus 641 ~~A~~~~~~~~~~~~~ 656 (665)
.+|.+.+..++...+.
T Consensus 733 ~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999888876553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-20 Score=183.27 Aligned_cols=296 Identities=12% Similarity=0.115 Sum_probs=229.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHccCc
Q 043580 361 AGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN---EITMVSVFCAIASSGT 434 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~ 434 (665)
..+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777888777643 344677778888888888888888888776432221 2346677778888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc------chHHHHHHHHHhcCChHHHHH
Q 043580 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV------SPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~ 508 (665)
++.|..+++.+.+.. +.+...+..++..+.+.|++++|.+.++.+....|.. ..+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887652 3455677888888888999999998888887763332 134567777888999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|...++++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998864 345667888889999999999999999999854 453 4668889999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh--cCChhHHHHHHHHHHhCCCccCCCc
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD--AGRWEDAFSIRKEMRDCGMKRLPGF 661 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 661 (665)
..|+...+..++..+.+.|++++|..+++++++..|++......+...+.. .|+.++|...++++.+++++++|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 457777778888999999999999999999999999987644444333322 5699999999999999999888875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-18 Score=180.14 Aligned_cols=350 Identities=10% Similarity=0.018 Sum_probs=228.2
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFY 332 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (665)
.-...++..+.+.|++++|..+++........+ ...+..+..+....|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344455666777788888888877777653222 3333344455556777777777777776653 22333344444444
Q ss_pred HhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHH
Q 043580 333 AACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHG 409 (665)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (665)
...|++++|...++.... .+...+..+...+...|++++|...++.
T Consensus 121 -------------------------------~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 121 -------------------------------LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred -------------------------------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 444444444455544432 2344566666667777777777777766
Q ss_pred HHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcc
Q 043580 410 MVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVS 488 (665)
Q Consensus 410 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 488 (665)
+.... |+.......+..+...|++++|...++.+.+....++......+...+...|++++|...+++..... .+..
T Consensus 170 ~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 170 QAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 65532 22222111123356667777777777766554333333344445667777888888888888877763 3455
Q ss_pred hHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 489 PWNAIICGLAMHGDANL----TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
.+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+ ..| +...+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 67777888888888875 788888888753 34566788888888889999999999998884 467 5677778
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKADVVI-WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+..+|.+.|++++|...++++. ..|+... +..+..++...|+.++|...++++++..|++.. ..++
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~~~~ 391 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------QSFE 391 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------hhHH
Confidence 8888889999999999988876 4465433 344566788899999999999999999888753 3334
Q ss_pred HHHHHHHHHHhC
Q 043580 642 DAFSIRKEMRDC 653 (665)
Q Consensus 642 ~A~~~~~~~~~~ 653 (665)
+|...+.++.+.
T Consensus 392 ea~~~~~~~~~~ 403 (656)
T PRK15174 392 EGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHHh
Confidence 555556555553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-17 Score=174.13 Aligned_cols=253 Identities=10% Similarity=0.025 Sum_probs=202.3
Q ss_pred cCCHHHHHHHHhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCcHHHH
Q 043580 366 NGMIEDARQLFNNMQKR------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGTLKEG 438 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 438 (665)
.+++++|.+.|+...+. ....++.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888876532 3456788888888999999999999998874 454 45677788888899999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043580 439 RWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRN 517 (665)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 517 (665)
...++.+.+.. +.+..++..+..++...|++++|...|++.....| +...+..+...+.+.|++++|+..+++..+..
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999988764 34467788899999999999999999999988744 45678888889999999999999999998753
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhH-------HHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKH-------YGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
+.+...+..+...+...|++++|++.|++... +.|+ ... ++.....+...|++++|.+++++.. ..|
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 44677889999999999999999999999884 3442 111 1222233444699999999999864 445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 589 -DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 589 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+...+..++..+...|++++|+..++++.++.+....
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 4567888999999999999999999999998876444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=174.61 Aligned_cols=294 Identities=10% Similarity=-0.022 Sum_probs=239.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHH
Q 043580 355 SWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIA 430 (665)
Q Consensus 355 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 430 (665)
.+..++.+....|++++|...++.+... +...+..+...+...|++++|+..++++... .|+ ...+..+...+.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~ 155 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV 155 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 3444445555677777777777776532 5567888899999999999999999999885 444 566777888999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CCcchHHHHHHHHHhcCChHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TSVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
..|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.... ++...+..+...+...|++++|+.
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999988765533332 33233 34788999999999999987752 233344556678889999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHH----HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHh
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL----GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRS 583 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (665)
.++++.+.. +.+...+..+...+...|++++ |...|+++. .+.| +...+..++..+...|++++|+..+++
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999864 4467788889999999999986 899999998 4578 788999999999999999999999999
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 584 MP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 584 ~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+. ..| +...+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|.+.|+++++...+
T Consensus 310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 86 345 56778888999999999999999999999999998877777889999999999999999999887554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=172.15 Aligned_cols=295 Identities=11% Similarity=0.053 Sum_probs=151.9
Q ss_pred HHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 043580 260 DGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCY---DFIQATIIHFYAACG 336 (665)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 336 (665)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666667777777766632 22334556666666666666666666666655321111 123344455555555
Q ss_pred ChHHHHHHHHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--------chHHHHHHHHHhCCCchHHHH
Q 043580 337 RINLARLQFELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQKRDV--------YSWSAMISGYAQNEQPNMALE 405 (665)
Q Consensus 337 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~ 405 (665)
+++.|...|+.... .+..++..++..+.+.|++++|.+.++.+.+.++ ..+..+...+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555544332 2334455555555555555555555555432211 123344445555566666666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC
Q 043580 406 LFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT 485 (665)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 485 (665)
.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+......++..++.+|...|++++|...++++....|
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666555432 1123344444555555555555555555555433222233445555555556666666665555555444
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc---cChHHHHHHHHHHhHhhcCCCCChh
Q 043580 486 SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH---AGLVDLGERYFKSMKSVYNVEPDLK 559 (665)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~ 559 (665)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4444455555555556666666666555553 4555555555544432 33555555555555554 4444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-17 Score=174.99 Aligned_cols=398 Identities=9% Similarity=0.017 Sum_probs=232.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
..-.+......|+.++|++++.+... .+...+..+...+...|++++|..+|++..+. -+.+......+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHC
Confidence 34455666677777777777777653 22334677777777777777777777777663 122344555666666777
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC--C-chhhHHHHHHHHHhcCCHHHHHHHHh
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK--D-HIASWNALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 377 (665)
|++++|...++.+.+.. +.+.. +..+..++...|+.+.|...+++.+. | +...+..+...+...+..++|.+.++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777777777777653 33333 55566666666666666666654332 2 22333444555555555555665555
Q ss_pred hcCCCCcc--------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcH---HHHHHHHHHHH
Q 043580 378 NMQKRDVY--------SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTL---KEGRWAHEYVL 446 (665)
Q Consensus 378 ~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~ 446 (665)
.... ++. ....++......+. ...+++ +.|...++.+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHHHHHHHHHH
Confidence 5443 111 00011111100000 011112 44455555554
Q ss_pred Hc-CCCCChh-HH----HHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043580 447 NN-SITLNDN-LS----AAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAIICGLAMHGDANLTLKIYSDLEKRNI 518 (665)
Q Consensus 447 ~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 518 (665)
+. ...|+.. .+ ...+..+...|++++|+..|+.+....+... ....+...|...|++++|+..|+++.....
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 32 1122111 11 0112233455777777777777666532211 112245567777777777777777665321
Q ss_pred CC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----------CCCCC---hhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 519 KL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----------NVEPD---LKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 519 ~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
.. .......+..++...|++++|.++++.+.+.. .-.|+ ...+..++..+...|++++|+++++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 12334555556677777777777777776430 01122 1244556777778888888888888
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 583 SMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 583 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
++. .+.+...+..++..+...|+.++|+..++++++++|++...+..++.++...|++++|.++++++++...
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 875 2235677777888888888888888888888888888888888888888888888888888888876543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-14 Score=137.31 Aligned_cols=605 Identities=12% Similarity=0.076 Sum_probs=431.9
Q ss_pred CChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhHHHhhhcCC
Q 043580 37 IAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTP 116 (665)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 116 (665)
+|...|+-++....+.+ +.++..|-+-...--..|++..|..+.....+..+.+-...+.+ +|-...+.|..+.-...
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea-iRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA-IRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH-HhcCChHHHHHHHHHHH
Confidence 47778888888888887 45555666666666677889999888887766433333333322 24444555555554333
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHH
Q 043580 117 IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNL 196 (665)
Q Consensus 117 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (665)
...+.+-..-+.+---..+...=.+++....+. ++-+...|. +.....+.+.|+.++....+.= +.+...|
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~s~dLw--- 413 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECC-PQSMDLW--- 413 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cchHHHH---
Confidence 221111111111111112223334556666654 222333443 3344556666777777766652 3333333
Q ss_pred HHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCeeeHHHHHHHHhhc
Q 043580 197 LNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--------KDVVSWGTMIDGYLQV 265 (665)
Q Consensus 197 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~ 265 (665)
-+|.+..-++.|.+++....+ .+...|.+-...--..|+.+.+..++.+... -+...|-.=...+-..
T Consensus 414 -lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 -LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 345555667777777777765 3555666666666677888888777766442 2333455555566666
Q ss_pred CChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 043580 266 ERLSEALTMYRAMLCDGIAPN--DVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARL 343 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 343 (665)
|..-.+..+.+....-|+.-. ..|+..-...|.+.+.++-+..+|...++. ++....++.....+--..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 777777777777777666543 367777788888888888888888888775 35666777777777777888888888
Q ss_pred HHHhcc---CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 043580 344 QFELGI---KDHIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKP 417 (665)
Q Consensus 344 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 417 (665)
++++.+ +.....|......+-..|++..|..++...-+. +...|-.-+..-..+.+++.|..+|.+... ..|
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISG 649 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCC
Confidence 888654 334556677777788889999999998877543 455777778888889999999999998877 467
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICG 496 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 496 (665)
+...|..-++.---.++.++|.+++++.++.- +.-...|..+...+-+.++++.|.+.|..-....| .+..|-.|...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 77777766666667788999999998887752 33346778888899999999999999887777644 45567777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
--+.|.+-+|..++++..-.+ +-+...|...+..-.+.|+.+.|..+..+..+. +..+...|..-|....+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 788899999999999998876 668889999999999999999999999998874 44478888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
....+++.... +-....+...+....++++|...|++++..+|+...++..+-..+...|.-++-.+++.+.... +
T Consensus 806 s~DALkkce~d--phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 806 SIDALKKCEHD--PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 88888888744 4455566677788889999999999999999999999999989999999999999999888765 4
Q ss_pred cCCCcccc
Q 043580 657 RLPGFSGV 664 (665)
Q Consensus 657 ~~~~~~~~ 664 (665)
+.-|..|.
T Consensus 882 P~hG~~W~ 889 (913)
T KOG0495|consen 882 PTHGELWQ 889 (913)
T ss_pred CCCCcHHH
Confidence 56666664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-17 Score=174.04 Aligned_cols=407 Identities=9% Similarity=0.006 Sum_probs=250.1
Q ss_pred HHHHHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCC
Q 043580 194 TNLLNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVER 267 (665)
Q Consensus 194 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 267 (665)
...+.+....|+.++|++++..... .....+..+...+.+.|++++|.+.+++... .+...+..+...+...|+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 3344455555666666655555543 1122355555556666666666666665332 234456667777777888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 043580 268 LSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFEL 347 (665)
Q Consensus 268 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 347 (665)
+++|+..+++..+. -+.+.. +..+...+...|+.++|...++++.+.. +.+......+..++...+..+.|...++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 88888888887764 222334 6666667777788888888888877764 33444555667777778888888887775
Q ss_pred ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc---hHHHHHHHHHHHC-CCCCChh-HH
Q 043580 348 GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQP---NMALELFHGMVDA-GVKPNEI-TM 422 (665)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~ 422 (665)
... ++.....+ ....+....... +.......+++ ++|++.++.+.+. ...|+.. .+
T Consensus 176 ~~~-~p~~~~~l--------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 176 ANL-TPAEKRDL--------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred CCC-CHHHHHHH--------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 554 22110000 000000111100 00011111222 5555555555542 1122211 11
Q ss_pred H----HHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-----chHHH
Q 043580 423 V----SVFCAIASSGTLKEGRWAHEYVLNNSIT-LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-----SPWNA 492 (665)
Q Consensus 423 ~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 492 (665)
. ..+..+...|+.++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+++....|.. .....
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 1122334556666666666666655422 221 11224556777777777777777766543322 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRN-----------IKLNS---ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D 557 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~ 557 (665)
+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|++.++++... .| +
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n 392 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGN 392 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 5556677777888877777777642 12332 24556777888899999999999999854 67 7
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...+..++.++...|++++|++.++++. ..|+ ...+...+..+...|++++|+..++++++..|+++..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8899999999999999999999999986 4464 6677777888999999999999999999999999974
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-15 Score=145.60 Aligned_cols=626 Identities=12% Similarity=0.044 Sum_probs=373.4
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhc---CCCCcchhhHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSC---STLDPVACNIMI 96 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll 96 (665)
+|...............|++++|.+++.++++.. +.....|..|...|-+.|+.+++...+=-. .+.|...|..+-
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3334445555555555699999999999999997 667779999999999999999998766443 344667788888
Q ss_pred HHHHhcCChhhHHHhhhcCCCCCcccH---HHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhH----HHHHHHHhccC
Q 043580 97 SGYIRNDRLNDAREVFDKTPIKCCVSY---TSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTL----ASVISSSVHLG 169 (665)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~ 169 (665)
....+.|++++|.-.|.+..+-++.-| ---...|-+.|+...|.+.|.++.+.....|..-. ..+++.+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999998775444333 33456788999999999999999887432222222 33455666777
Q ss_pred ChHHHHHHHHHHHHHh-cCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----C----------------------Ccc
Q 043580 170 GIWECRMLHGLVIKLM-IDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----R----------------------NIV 222 (665)
Q Consensus 170 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----------------------~~~ 222 (665)
+.+.|.+.++.....+ -..+...++.++..|.+...++.|......+.. + +..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 7788888887777633 345667778888888888888888877655542 1 111
Q ss_pred cHHHH----HHHHH--hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 043580 223 SWNVM----LNGFA--KAGLVELARELFERIP----SKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVD 292 (665)
Q Consensus 223 ~~~~l----l~~~~--~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 292 (665)
+|..- .-++. +.+...+++.-|-... ..++..|.-+..+|...|++.+|+.+|..+...-.--+...|..
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 12111 11122 2233333333222111 12445677777778888888888888887776544445667777
Q ss_pred HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch------------hhHHHHH
Q 043580 293 LISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI------------ASWNALI 360 (665)
Q Consensus 293 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~l~ 360 (665)
+.+.+...|..++|.+.|..++... +.+..+...+...+.+.|+.++|.+.++....||. .......
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 7777777788888888887777654 34455566677777778888888777776554441 2222334
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC--------------------------CcchHHHHHHHHHhCCCchHHHHH------HH
Q 043580 361 AGFIRNGMIEDARQLFNNMQKR--------------------------DVYSWSAMISGYAQNEQPNMALEL------FH 408 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~------~~ 408 (665)
..+...|+.++=..+...|..+ +......++.+-.+.++......- +.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 4555666655533333322210 111111222222222221111110 11
Q ss_pred HHHHCCCCCChh--HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCCh----hHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 409 GMVDAGVKPNEI--TMVSVFCAIASSGTLKEGRWAHEYVLNNSI-TLND----NLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 409 ~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
--...|+..+.. .+.-++.++++.+++++|..+...+..... ..+. ..-...+.+....+++..|...+..+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 111122222221 244555667777777777777776654322 1111 122344455566777777777777766
Q ss_pred hC-----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCC
Q 043580 482 DR-----TT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE 555 (665)
Q Consensus 482 ~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 555 (665)
.. .+ -...|+..++...+.++-.--.+.+..+......-+........+-....+.+..|+..+-++.. ..
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~ 770 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QN 770 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hC
Confidence 64 11 12345555555555554443344433333321111122222222333446777788887776663 46
Q ss_pred CChhHHH-HHhhHhhh----------cCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 556 PDLKHYG-CMVDLLGR----------AGQLEDAEEVIRSMP--MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 556 p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
|+....+ +++-++.. .-..-.+..++.+.. ..+ ...++..++.+|...|=..-|+.+|+++++..
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 7533333 33333321 112334445554443 223 56788889999999999999999999999987
Q ss_pred CCCCc------------hHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 621 PSHGP------------SRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 621 p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|.... +-+.|.-+|...|+.+-|.+++++-
T Consensus 851 p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 851 PKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred ccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 64322 1345666899999999999988654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=151.58 Aligned_cols=457 Identities=13% Similarity=0.062 Sum_probs=284.9
Q ss_pred hccCChHHHHHHHHHHHHHhcCCchhHH-HHHHHHHhccCCHHHHHHHHhhccC--CCc------ccHHHHHHHHHhcCC
Q 043580 166 VHLGGIWECRMLHGLVIKLMIDGFVIIS-TNLLNMYCVCSSLVEARSLFDEMKE--RNI------VSWNVMLNGFAKAGL 236 (665)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~~------~~~~~ll~~~~~~~~ 236 (665)
.......+|...++-+++...-|+.... -.+...+.+...+.+|+++++.... |++ ...+.+.-.+.+.|.
T Consensus 212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence 3344455566666666655544443222 1244556666677777777665543 221 122333333556677
Q ss_pred HHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH------------HHHHHHHH-----h
Q 043580 237 VELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV------------MIVDLISA-----C 297 (665)
Q Consensus 237 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------~~~~ll~~-----~ 297 (665)
++.|+..|+.+.+ ||..+--.|+-++..-|+.++..+.|..|..--..||.. ..+..|.. +
T Consensus 292 y~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 292 YDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred chhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 7777777766554 555444444445555667777777777776432222222 11111110 0
Q ss_pred hccc--chhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHH
Q 043580 298 GRAM--AFGEGLQIHSIIVKAGFDCYDFI-QATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQ 374 (665)
Q Consensus 298 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 374 (665)
-+.+ +.+.++-.-..+..--+.|+-.. +...+...-.....+.|.. .-..-...+.++|+++.|.+
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d-----------lei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID-----------LEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh-----------hhhhHHHHHHhccCHHHHHH
Confidence 0000 00000000001111111111100 0001111111101111100 00111234789999999999
Q ss_pred HHhhcCCCCcchHHHHH-----HHHHh-CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 375 LFNNMQKRDVYSWSAMI-----SGYAQ-NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 375 ~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
+++-..++|..+-.+.. .-|.+ ..++..|..+-+...... +-+....+.--+.....|++++|...+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 99988877554332222 12222 345667777666554432 223333333334445678999999999999876
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIG 527 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 527 (665)
.-.-....|+ +.-.+-..|++++|++.|-++... ..+..+...+...|-...++..|++++-+.... ++.|+..+..
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 5444444444 445677899999999999988876 566777888889999999999999999887765 4668889999
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAAS-RIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~g 604 (665)
|...|.+.|+-..|.+.+-.-- ..-| |..+...|...|....-+++|+.+|++.. ..|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999998766543 4566 89999999999999999999999999975 789999998888765 5789
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
++.+|..+|+......|.+...+..|..++...|-
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999998888774
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-15 Score=160.61 Aligned_cols=436 Identities=9% Similarity=0.000 Sum_probs=262.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH-H--HHHHHhcCCHHHHHHH
Q 043580 167 HLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV-M--LNGFAKAGLVELAREL 243 (665)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-l--l~~~~~~~~~~~a~~~ 243 (665)
+.|+.+.|...+++..+..+.....++ .++..+...|+.++|+..+++...|+...+.. + ...+...|++++|+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444443322211222 44445555555555555555555443322222 2 2244444555555555
Q ss_pred HhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCC
Q 043580 244 FERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDC 320 (665)
Q Consensus 244 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 320 (665)
|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|++.++++.+.. +.
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 555543 2 234444555666666667777777666655 34554444333333333444444666666666654 44
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCC-
Q 043580 321 YDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQ- 399 (665)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~- 399 (665)
+...+..++.++.+.|-...|.+..+... +..+-..... =+.+.|-+..+....++. ...++
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~----------~~~~r~ 264 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ-----LERDAAAEQVRMAVLPTR----------SETERF 264 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH-----HHHHHHHHHHhhcccccc----------cchhhH
Confidence 45555666666666666666665554321 1100000000 000111111111000000 00112
Q ss_pred --chHHHHHHHHHHHC-CCCCCh-h----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 043580 400 --PNMALELFHGMVDA-GVKPNE-I----TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN 471 (665)
Q Consensus 400 --~~~a~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (665)
.+.|+.-++.+... +..|.. . ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34555555555542 122321 1 222345677788888899999999888887766667788889999999999
Q ss_pred HHHHHHHHchhCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC--hH-HHHHHHH
Q 043580 472 TAFEVFYHIRDRTT-------SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-----------KLN--SI-TFIGVLS 530 (665)
Q Consensus 472 ~A~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~--~~-~~~~l~~ 530 (665)
+|..++..+....+ +......|.-++...+++++|..+++++.+.-. .|| .. .+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999988866421 222246788888899999999999999887321 122 22 3445566
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~ 607 (665)
.+...|+..+|++.++++.. ..| |......+..++...|++.+|++.++.+. ..| +.......+.++...|++.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 77889999999999999984 478 89999999999999999999999998865 345 5666777888888999999
Q ss_pred HHHHHHHHHhccCCCCCch
Q 043580 608 VGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~ 626 (665)
+|..+.+.+.+..|+++..
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHhhCCCchhH
Confidence 9999999999999999863
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-15 Score=148.49 Aligned_cols=581 Identities=13% Similarity=0.047 Sum_probs=285.4
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC----CcchhhHHHHHHHhcCChhhHHHhhhcCCCCC
Q 043580 44 QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL----DPVACNIMISGYIRNDRLNDAREVFDKTPIKC 119 (665)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 119 (665)
.+|..+...|+.|+..||.+++.-||..|+.+.|- +|.-|.-. +...|+.++.++.+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56777788888888888888888888888888887 77766532 4567777887777777776554 667
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH-HHhcCCchhHHHHHHH
Q 043580 120 CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVI-KLMIDGFVIISTNLLN 198 (665)
Q Consensus 120 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 198 (665)
..+|..|+.+|.+.||...-..+=+.|.. ++..+...|.......++..+. .-+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 77888888888888876652222221221 1111122221111111111100 00001111 11222
Q ss_pred HHhccCCHHHHHHHHhhccCCCcc-cHHHHHHHHHhc-CCHHHHHHHHhhCCC-CCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 199 MYCVCSSLVEARSLFDEMKERNIV-SWNVMLNGFAKA-GLVELARELFERIPS-KDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
...-.|-++.+++++..++-.... +...+++-.... ..+++-..+-....+ ++..+|..++.+-...|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 222333344444444333310000 000011111111 122222222233333 45555555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH----------------
Q 043580 276 RAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN---------------- 339 (665)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---------------- 339 (665)
.+|+++|++.+.+.|..++-+ .++...+..+++-|...|+.|+..++...+..+...|...
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAav 304 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAV 304 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHH
Confidence 555555555555555555544 4555555555555555555555555544443333322211
Q ss_pred --------HHHHHHHh----------------ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHH
Q 043580 340 --------LARLQFEL----------------GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-------DVYSWS 388 (665)
Q Consensus 340 --------~a~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 388 (665)
.|-+.++. +......+|...++ ...+|+-++.+++...+..+ ++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 11111111 11112223322222 22245555555555544432 222222
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 043580 389 AMISGYA------------------------------------------------------------------------- 395 (665)
Q Consensus 389 ~l~~~~~------------------------------------------------------------------------- 395 (665)
.++.-|.
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 2222221
Q ss_pred -------hCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHh
Q 043580 396 -------QNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLSAAIIDMYAK 466 (665)
Q Consensus 396 -------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 466 (665)
+.-+..+++..-++.... .-| ..|..++.-++.....+.|..+.+++.. ..+..+...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 111111111111111000 000 2345556666666666666666666642 3344556667778888888
Q ss_pred cCCHHHHHHHHHHchhC---CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------------------
Q 043580 467 CGSINTAFEVFYHIRDR---TTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI------------------------ 518 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------ 518 (665)
.+...++..++.++.+. .+. ..++..++...+..|+.+...++.+-+...|+
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcch
Confidence 88888888888777765 121 22344455555566666666555555444432
Q ss_pred ------CCChHHHHHHHHHhcc--cChHHHHHHH------HHHhHh---------hcC---------------CCC----
Q 043580 519 ------KLNSITFIGVLSTCCH--AGLVDLGERY------FKSMKS---------VYN---------------VEP---- 556 (665)
Q Consensus 519 ------~p~~~~~~~l~~~~~~--~~~~~~a~~~------~~~~~~---------~~~---------------~~p---- 556 (665)
+|.+.....+.+.+.+ ..+++.+..+ |.+.-+ ..| +.|
T Consensus 621 ~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 2222222222222111 1112221111 111100 001 111
Q ss_pred -----ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCch--
Q 043580 557 -----DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPS-- 626 (665)
Q Consensus 557 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~-- 626 (665)
+..-...|+..|.+.|+++.|..++.++...|++.+...|...+.+.. ++-++....+++.+..|..++.
T Consensus 701 ~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~ 780 (1088)
T KOG4318|consen 701 LELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTC 780 (1088)
T ss_pred HHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchH
Confidence 001112366678888889999999988887788888877777776544 5667777777787777766654
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 627 -RVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 627 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.-.+.+..+-.+.+.|.+++.+..+..
T Consensus 781 ~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 781 YYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 3333344555556668888888887763
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-15 Score=154.39 Aligned_cols=435 Identities=12% Similarity=0.045 Sum_probs=286.3
Q ss_pred HHHHHhccCCHHHHHHHHhhccCCCcc---cHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee-HHHH--HHHHhhcCChh
Q 043580 196 LLNMYCVCSSLVEARSLFDEMKERNIV---SWNVMLNGFAKAGLVELARELFERIPSKDVVS-WGTM--IDGYLQVERLS 269 (665)
Q Consensus 196 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~ 269 (665)
-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++...|+... +..+ ...+...|+++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567899999999999998863332 23377788888899999999998888764433 3333 34677778999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 043580 270 EALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI 349 (665)
Q Consensus 270 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 349 (665)
+|+++|+++.+.. +-++..+..++..+...++.++|++.++.+.+.. |+...+..++..+...++...|.+.+++.+
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999988752 2234555566667777788888888777776653 223333333333333344434555555433
Q ss_pred --CC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHH
Q 043580 350 --KD-HIASWNALIAGFIRNGMIEDARQLFNNMQKR-DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSV 425 (665)
Q Consensus 350 --~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 425 (665)
.| +...+..+..++.+.|-...|+++...-+.- +...+..+ +.+.|.+..+ .+..|+..
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr----~a~~~~~~----- 259 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVR----MAVLPTRS----- 259 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHh----hccccccc-----
Confidence 12 2334445555555555555555555443211 00000000 0111111111 11111100
Q ss_pred HHHHHccCc---HHHHHHHHHHHHH-cCCCCCh-hH----HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHH
Q 043580 426 FCAIASSGT---LKEGRWAHEYVLN-NSITLND-NL----SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAII 494 (665)
Q Consensus 426 l~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~-~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~ 494 (665)
...+ .+.+..-++.+.. .+-.|.. .. ..-.+-++...|++.++++.|+.+...+..+. +-..+.
T Consensus 260 -----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 260 -----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0112 2344444444443 1222322 22 22345567889999999999999997643333 556788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-----CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC----------CCCC--
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRN-----IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN----------VEPD-- 557 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~-- 557 (665)
.+|...+++++|+.+++++.... ..++......|.-++...+++++|..+++.+.+... -.||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122344467889999999999999999999986311 0132
Q ss_pred -hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 558 -LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 558 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
...+..++..+.-.|++.+|++.++++. ..| +...+..+...+...|...+|+..++.+..++|++......++.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2334456788889999999999999986 335 7888899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.++.+.+.+.-.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999988876543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-14 Score=138.82 Aligned_cols=584 Identities=12% Similarity=0.003 Sum_probs=399.9
Q ss_pred HHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhc---CCCCCcccHHHHHHHHhhcCChHHHH
Q 043580 67 LYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDK---TPIKCCVSYTSMIMGFAQNDCWREAL 140 (665)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 140 (665)
.+...|+.++|..++.+++.. ++..|..|...|-..|+.+++...+-. ..+.|..-|..+.....+.|++.+|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 333449999999999998764 557899999999999999999887743 44566788999999999999999999
Q ss_pred HHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHH----HHHHHhccCCHHHHHHHHhhc
Q 043580 141 EVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTN----LLNMYCVCSSLVEARSLFDEM 216 (665)
Q Consensus 141 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~ 216 (665)
-+|.+.++.. +++...+.--...|.+.|+...|..-+.++.....+.|..-... .++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999874 34555555667788899999999999999998876555444443 455666777778898888877
Q ss_pred cC-----CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------CCeeeHH----HHHHH
Q 043580 217 KE-----RNIVSWNVMLNGFAKAGLVELARELFERIPS--------------------------KDVVSWG----TMIDG 261 (665)
Q Consensus 217 ~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~l~~~ 261 (665)
.. -+...++.++..+.+...++.|......+.. ++..+|. -++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 64 2334688888889988888888776654432 1111222 23334
Q ss_pred HhhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 043580 262 YLQVERLSEALTMYRAMLCDGIAP--NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN 339 (665)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (665)
+...+..+....+........+.| +...|.-+..++...|.+..|+.++..+.......+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444555555555556655444 556788999999999999999999999998877777889999999999999999
Q ss_pred HHHHHHHhccCCch---hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc------------hHHHHHHHHHhCCCchHHH
Q 043580 340 LARLQFELGIKDHI---ASWNALIAGFIRNGMIEDARQLFNNMQKRDVY------------SWSAMISGYAQNEQPNMAL 404 (665)
Q Consensus 340 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~a~ 404 (665)
.|.+.+++.+..++ ..-..|...+.+.|+.++|.+.+..+..+|.. ........+.+.|+.++-+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998765443 34456677899999999999999998765421 2233445566777777655
Q ss_pred HHHHHHHHCC-----C-----------------CCChhHHHHHHHHHHccCcHHHHHHHHHH------HHHcCCCCCh--
Q 043580 405 ELFHGMVDAG-----V-----------------KPNEITMVSVFCAIASSGTLKEGRWAHEY------VLNNSITLND-- 454 (665)
Q Consensus 405 ~~~~~m~~~~-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~-- 454 (665)
.+-..|+... + .-...+...+..+-.+.++.....+-... -...++..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5544443211 1 11222233334444444432222211111 1123444333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CC-ChH
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTSV---SPWNAIICGLAMHGDANLTLKIYSDLEKR-NI--KL-NSI 523 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~p-~~~ 523 (665)
..+..++..+++.+++++|..+...+... .++. ..-...+.+....+++..|...++.|... +. .| -..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 35567888999999999999999887775 2222 12345566778899999999999999875 11 22 223
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C-hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH-
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D-LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAA- 599 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~- 599 (665)
.|+...+...+.++-.--.+++..+. ..+| + +..+..-...+..++.+..|+..+-++- ..|+.+..+-++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555566665544445444443 2344 2 3333334455567889999998776653 44654444333322
Q ss_pred HH----------hcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 600 SR----------IHGNVEVGERAAKSLAGLQPS--HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 600 ~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+. ++-..-+++.++++..++... .-.+.+.+|.+|...|-.--|..+|+++++-.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 21 222466778888888766544 66779999999999999999999999998853
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-15 Score=134.54 Aligned_cols=437 Identities=10% Similarity=0.098 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHH--hcCCchHH-HHHHhhc--------------
Q 043580 22 YELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYA--KCGLISQA-KSMFDSC-------------- 84 (665)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~-------------- 84 (665)
...+-|+|++.- .+|...++--+++.|.+.|++.+...--.|+...+ .+.++.-| .+.|-.|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345567776654 45788999999999999998888877666654333 33333222 1222222
Q ss_pred ---------CCCCcchhhHHHHHHHhcCChhhHHHhhhcCCC----CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCC
Q 043580 85 ---------STLDPVACNIMISGYIRNDRLNDAREVFDKTPI----KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGV 151 (665)
Q Consensus 85 ---------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 151 (665)
....+.++.++|.++|+--..+.|.+++++... -+..+||.+|.+-.-. .-.+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 223445555555555555555555555554432 2334555555433211 11455555555555
Q ss_pred CCCHhhHHHHHHHHhccCChHH----HHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHH-HHHHHhhccCCCcccHHH
Q 043580 152 IPNEVTLASVISSSVHLGGIWE----CRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVE-ARSLFDEMKERNIVSWNV 226 (665)
Q Consensus 152 ~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 226 (665)
+||..|+|+++++..+.|+++. |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~--------- 340 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ--------- 340 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH---------
Confidence 5666666666655555554443 33455555555566665555555555555555432 222222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC--------CCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC----CCCCC---HHHHH
Q 043580 227 MLNGFAKAGLVELARELFERIP--------SKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD----GIAPN---DVMIV 291 (665)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~---~~~~~ 291 (665)
+.+. ..|...|...+..|.+..+.+-|.++-.-+... -+.|+ ...|.
T Consensus 341 ------------------N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 341 ------------------NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred ------------------HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 1110 012334444555555555555554443333211 02222 22345
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHH
Q 043580 292 DLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 292 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
.+....+.....+.....|+.|+-.-.-|...+...++++....+.++-.-+++
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw-------------------------- 456 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIW-------------------------- 456 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHH--------------------------
Confidence 555555556666666666666655554455555444444444444443333222
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 043580 372 ARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS--SGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 372 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 449 (665)
..+.. |...-+-+--.+++..|......|+...-..+-....+ ..-.+..+..-.++++.
T Consensus 457 -----~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 457 -----KDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred -----HHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 21110 00011111222333333333333432211111111111 00111111122223332
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 043580 450 ITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWN---AIICGLAMHGDANLTLKIYSDLEKRNIKLNSI 523 (665)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 523 (665)
..+....+.+.-.+.+.|+.++|.++|..+... -|.....+ .++......+++..|..+++-|...+.+.-..
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 334445666777788888899888888877543 33344445 45556667788888888888887665322222
Q ss_pred HHHHHHHHhccc
Q 043580 524 TFIGVLSTCCHA 535 (665)
Q Consensus 524 ~~~~l~~~~~~~ 535 (665)
.-+.+...|.-.
T Consensus 598 La~RI~e~f~iN 609 (625)
T KOG4422|consen 598 LAQRIMEDFAIN 609 (625)
T ss_pred HHHHHHHhcCcC
Confidence 333444444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=132.34 Aligned_cols=432 Identities=13% Similarity=0.071 Sum_probs=284.0
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh--ccCChHHHH-HHHHHHHHHhcCCchhHHHHH
Q 043580 120 CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSV--HLGGIWECR-MLHGLVIKLMIDGFVIISTNL 196 (665)
Q Consensus 120 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 196 (665)
+.+-|.|++.. ..|.+..+.-+|+.|...|+..+...-..+++..+ ...+.--++ +.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 34666766654 46788889999999999988777766555555433 223322221 1222222222 2222222
Q ss_pred HHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeeeHHHHHHHHhhcCChhHHH
Q 043580 197 LNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK----DVVSWGTMIDGYLQVERLSEAL 272 (665)
Q Consensus 197 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 272 (665)
+.|...+ ++-+...+...+|..+|.++|+-...+.|.+++++.... +..+||.+|.+-.- ..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3444433 444555556678999999999999999999999987753 55677777766443 3337
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhH----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHHH-
Q 043580 273 TMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEG----LQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR-LQFE- 346 (665)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~- 346 (665)
+++.+|....+.||..||++++....+.|+++.+ .+++.+|.+.|+.|....|..++..+++.++..+.. .++.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8999999999999999999999999999987765 567888999999999999999999999988875432 2221
Q ss_pred -------h---ccCC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------CcchHHHHHHHHHhCCCchHHH
Q 043580 347 -------L---GIKD-HIASWNALIAGFIRNGMIEDARQLFNNMQKR-----------DVYSWSAMISGYAQNEQPNMAL 404 (665)
Q Consensus 347 -------~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~ 404 (665)
+ .+.| +...|...+..|.+..+.+-|.++..-+... ...-|..+....|+....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122 3445677888888989988888887766532 2234667778888888999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 043580 405 ELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT 484 (665)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 484 (665)
..|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|..........+...+++..- .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------h 484 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------H 484 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC--------------C
Confidence 99999998888999999999999999999999999999999988866555554444444444330 0
Q ss_pred CCcch---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 485 TSVSP---WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 485 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
|+... +.....-++ ..-.+.....-.+|.... ......+..+-.+.+.|..++|.++|..+.+...--|-....
T Consensus 485 p~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 11111 111111110 001111222333444433 333445555666677777777777777775442333433344
Q ss_pred HH---HhhHhhhcCChHHHHHHHHhCC
Q 043580 562 GC---MVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 562 ~~---l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
++ +++.-.+.+....|...++-+.
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43 3444445566777777766663
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-11 Score=119.57 Aligned_cols=542 Identities=11% Similarity=0.041 Sum_probs=343.9
Q ss_pred hhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC---CcchhhHHHHHHHhcCChhhHHHhhhcC
Q 043580 39 VSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL---DPVACNIMISGYIRNDRLNDAREVFDKT 115 (665)
Q Consensus 39 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 115 (665)
.+.|..+.....++- +.++..|-.....-. +...=.+++.+..+. ++..|.+ -..-...++|.-++.+.
T Consensus 331 ~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rA 402 (913)
T KOG0495|consen 331 PDVAKTVVANAVRFL-PTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERA 402 (913)
T ss_pred hHHHHHHHHHHHHhC-CCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHH
Confidence 355666666666553 444444433332221 122223444444432 2333332 23344555566666654
Q ss_pred CCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHH----HHHhcCCchh
Q 043580 116 PIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLV----IKLMIDGFVI 191 (665)
Q Consensus 116 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ 191 (665)
.+-.+ +-.-|.-++++..-++.|.+++...++. ++.+...|.+....--..|+.+...++.+.. ...|+..+..
T Consensus 403 veccp-~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 403 VECCP-QSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred HHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 43111 1123444566666677778888777765 5667777766666666777777766665543 3456777777
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhhccC-----CC-cccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHH
Q 043580 192 ISTNLLNMYCVCSSLVEARSLFDEMKE-----RN-IVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGY 262 (665)
Q Consensus 192 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 262 (665)
-|-.=...+-..|..-.+..+...+.. .| ..+|..-...|.+.+.++-|..+|....+ .+...|......-
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 777767777777777776666665553 11 23555555556666666666665555443 1334454444444
Q ss_pred hhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 043580 263 LQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR 342 (665)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (665)
-..|..++...+|++.... ++-....+.......-..|+...|..++....+..
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~------------------------- 614 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN------------------------- 614 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-------------------------
Confidence 4556666666666666653 23233333333444444566666665555555443
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE- 419 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 419 (665)
+.+...|..-+.....+.+++.|..+|.+... ++...|.--+..---.++.++|++++++..+. -|+-
T Consensus 615 -------pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 615 -------PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred -------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 12334555555666666666666677766543 34455555555555567788888888777763 4443
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHH
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLA 498 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 498 (665)
..|..+...+.+.++.+.|...|..-.+. .+..+..+-.|...--+.|.+-+|..++++..-. +.+...|-..|..-.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 34555556666667777776655443322 2334466777777778888999999999988776 556778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
+.|..+.|..+..+.++. ++.+...|.--|...-+.++-..+...+++ ..-|+...-.+...+....++++|.
T Consensus 765 R~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999998888875 466777888888877777775555554444 3567788888999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 579 EVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 579 ~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+.|.+.. ..| ..++|..+...+..+|.-+.-.+++.+....+|.+...|....+-
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 9999986 334 568898899999999999999999999999999999987766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=155.25 Aligned_cols=257 Identities=17% Similarity=0.157 Sum_probs=114.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH-HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 043580 391 ISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS-VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (665)
...+.+.|++++|++++++......+|+...|.. +.......++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566667777776654443322344333333 333444566677777777766654432 44455556666 68888
Q ss_pred HHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHhcccChHHHHHHHHHHh
Q 043580 470 INTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNSITFIGVLSTCCHAGLVDLGERYFKSM 548 (665)
Q Consensus 470 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 548 (665)
+++|.+++....+..+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887776666677778888888999999999999999977543 3457778888999999999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 549 KSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 549 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+. .| |......++..+...|+.+++.++++... .+.++..|..+..++...|+.++|...++++...+|+++.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 965 88 68889999999999999999888887765 2356678889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+++.++...|+.++|.++++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-13 Score=135.42 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=121.4
Q ss_pred hhHhhhhhhhcCCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCC------------------------CCCcchH
Q 043580 6 FHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGL------------------------ESNTFIQ 61 (665)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~ 61 (665)
+.+=||...+..++.|++.||..+|..|+..|+.+.|- +|.-|.-... .|.++||
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDty 86 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTY 86 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHH
Confidence 44556777788899999999999999999999988887 6665553222 4566788
Q ss_pred HHHHHHHHhcCCchHHH---HHHhhcCC---------------------C--CcchhhHHHHHHHhcCChhhHHHhhhcC
Q 043580 62 NSLINLYAKCGLISQAK---SMFDSCST---------------------L--DPVACNIMISGYIRNDRLNDAREVFDKT 115 (665)
Q Consensus 62 ~~l~~~~~~~g~~~~a~---~~~~~~~~---------------------~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 115 (665)
+.|+.+|+..||+.--. +-++.+.. | .+..- ..+....-.|-|+.+..++..+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 88888888888765422 21211111 0 01111 1222223333444444443222
Q ss_pred C----------------------------------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHH
Q 043580 116 P----------------------------------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASV 161 (665)
Q Consensus 116 ~----------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 161 (665)
+ .+++.+|..++.+-...|+.+.|..++.+|++.|...+.+-|-.+
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 145556777777777777777777777777777777666655555
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 162 ISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 162 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
+-+ .++...+..++.-|...|+.|+..|+..-+..+..+|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 544 66666677777777777777777777665555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-14 Score=129.75 Aligned_cols=455 Identities=13% Similarity=0.061 Sum_probs=287.5
Q ss_pred CCchhHHHHHHHHHhccCCHHHHHHHHhhccC----CCcc-cHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------ee
Q 043580 187 DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----RNIV-SWNVMLNGFAKAGLVELARELFERIPS--KD------VV 253 (665)
Q Consensus 187 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~------~~ 253 (665)
..+-.+...|..-|..+....+|+..++-+.+ ||.- .-..+...+.+...+.+|+..++-... |+ +.
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 33444555677777777788888888887775 3322 112234556677788888888765443 21 23
Q ss_pred eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHH--------
Q 043580 254 SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQ-------- 325 (665)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 325 (665)
..+.+.-.+.+.|+++.|+..|+...+ ..|+-.+-..|+-.+.-.|+-+...+.|..|......++..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 445555567788999999999888776 4688777666776777788888888888888765333322111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCch----hhHHHHHHHHHh---cCCHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHI----ASWNALIAGFIR---NGMIEDARQLFNNMQKR--DVYSWSAMISGYAQ 396 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~ 396 (665)
..++.-..+.... +-+++.-+.+. .|-..+|.-... .--.+-+++.++.-... -...--.-...+.+
T Consensus 356 ~~ll~eai~nd~l----k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 356 DNLLNEAIKNDHL----KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred hHHHHHHHhhHHH----HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 0111111111000 00000000000 000001100000 00011111111111100 00011112345778
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH--ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA--SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.|+++.|+++++-+.+..-+.....-+.+-..+. -..++..|.++-+..+... .-++.....-.......|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 9999999999998877553333333333322222 2346667777766665422 222233333334455689999999
Q ss_pred HHHHHchhCCCCcchHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 475 EVFYHIRDRTTSVSPWNA---IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
+.+++... .+..+-.+ +.-.+...|+.++|+..|-++..- +..+...+..+...|....+...|++++.+..
T Consensus 511 ~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~-- 585 (840)
T KOG2003|consen 511 EFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN-- 585 (840)
T ss_pred HHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--
Confidence 99999988 44443333 334567889999999999887653 35567788888999999999999999999887
Q ss_pred cCCCC-ChhHHHHHhhHhhhcCChHHHHHHH-HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 552 YNVEP-DLKHYGCMVDLLGRAGQLEDAEEVI-RSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 552 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
.+-| |+.+...|.+.|-+.|+...|.+.. +... .+.+..+...|...|....-.++|+.+++++.-++|+....-.
T Consensus 586 -slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 5577 8999999999999999999999875 4444 4446667666666666666679999999999999999999888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 629 LLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+++.++.+.|+|.+|..+|+....+-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999999999999999987653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-13 Score=126.63 Aligned_cols=218 Identities=10% Similarity=0.086 Sum_probs=177.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
-.|+.-.+..-++..++....+.. .|--+..+|....+.++....|++.... +.++.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357777888888888876544333 2666777889999999999999999887 56788899888888889999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
|++.+... +-+...|..+.-+..+.+.++++...|++.+++ ++-.++.|+....++...++++.|.+.|+... ..|
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999853 335667777777778899999999999999975 33368999999999999999999999999875 233
Q ss_pred C-------HHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 589 D-------VVIW-GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 589 ~-------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
. ...+ +.-+..+...+++..|+.+++++++++|....++..|+.+-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2121 22222344569999999999999999999999999999999999999999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-13 Score=123.50 Aligned_cols=327 Identities=12% Similarity=0.056 Sum_probs=231.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc-hHHHHHHHHHhC
Q 043580 319 DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVY-SWSAMISGYAQN 397 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~ 397 (665)
..|...+-.....+.+.|....|+..|...+..-+..|.+-+....-..+.+.+..+.......+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444555666677777777666544433333333332222222333332222222221111 111244556666
Q ss_pred CCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-C-CChhHHHHHHHHHHhcCCHHH-HH
Q 043580 398 EQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSI-T-LNDNLSAAIIDMYAKCGSINT-AF 474 (665)
Q Consensus 398 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~-A~ 474 (665)
.+.++++.-.+.....|++-+...-+....+.....+++.|+.+|+++++... . -|..+|..++-....+.++.- |.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 67888888888888888766665555566666778899999999999987632 1 234566555433222222211 22
Q ss_pred HHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCC
Q 043580 475 EVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNV 554 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 554 (665)
.++ .+. +-.+.|..++..-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|++-++++. .+
T Consensus 321 ~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di 393 (559)
T KOG1155|consen 321 NVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DI 393 (559)
T ss_pred HHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hc
Confidence 221 111 2455677778888888999999999999999875 4456788889999999999999999999998 67
Q ss_pred CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 555 EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 555 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
.| |...|-.|..+|.-.+.+.-|+-.|+++. .+| |+..|.+|+.+|.+.++.++|+..|++++.....+...+..|+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 89 99999999999999999999999999986 455 8999999999999999999999999999999888889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 043580 632 NIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++|-+.++.++|.++|++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=140.15 Aligned_cols=281 Identities=10% Similarity=0.020 Sum_probs=227.4
Q ss_pred CCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCChhHHHHHHHHHHccCcHHHHHHH
Q 043580 367 GMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAG--VKPNEITMVSVFCAIASSGTLKEGRWA 441 (665)
Q Consensus 367 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 441 (665)
-+..+|...|..+... ...+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+ +-+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3467888888886543 34566778899999999999999999988743 12355677777665432 122222
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 442 HEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+..-+-.--+..+.+|.++..+|.-+++.+.|++.|++..+..| ...+|+.+..-+.....+|.|...|+..+... +-
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-ch
Confidence 32222222356678999999999999999999999999999755 56788888888899999999999999887642 23
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...|-.+...|.+.++++.|+-.|+++. .++| +..+...+...+.+.|+.++|+.+++++. ...++..-..-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 45577888899999999999999999998 7899 88889999999999999999999999986 334666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+...+++++|...++++.++.|++...+..+|++|.+.|+.+.|+.-|.=+.+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7888999999999999999999999999999999999999999999999888877654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-12 Score=116.02 Aligned_cols=287 Identities=10% Similarity=0.072 Sum_probs=209.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhHHHHHHHHHHccC
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGV--KPNEITMVSVFCAIASSG 433 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~ 433 (665)
..++....+.+++..-.+..... +...-+....+.-...++++|+.+|+++.+... --|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34454555555555544444322 222333334444556788999999998887631 124556666654432221
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSD 512 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 512 (665)
. ..++..-.-.--+..+.++..+.+.|.-.++.++|...|++..+..| ....|+.|..-|...++...|++-+++
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 12222222221234456677788888889999999999999988744 456788888999999999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC--CC
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK--AD 589 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 589 (665)
.++-+ +.|-..|-.+.++|.-.+...-|+-+|++.. .+.| |...|.+|.++|.+.++.++|+..|.+...- .+
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99864 5588899999999999999999999999988 6689 8999999999999999999999999998633 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAG-------LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...+..|...+.+.++.++|..++++.++ ..|.-..+...|+.-+.+.+++++|-.+......-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 58889999999999999999999999876 344444556678888888899988887766665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-11 Score=109.44 Aligned_cols=466 Identities=12% Similarity=0.074 Sum_probs=288.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 043580 123 YTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCV 202 (665)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (665)
|-...+-=-..+++..|.++|++..+.. .-+...|...+.+-.+......|+.+++..+..-+..|..= -..+.+--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHH
Confidence 3333333345667778888888888765 33566677777777777888888888888877655544432 223334445
Q ss_pred cCCHHHHHHHHhhccC--CCcccHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHhhcCChhHHHHHHHHH
Q 043580 203 CSSLVEARSLFDEMKE--RNIVSWNVMLNGFAKAGLVELARELFERIP--SKDVVSWGTMIDGYLQVERLSEALTMYRAM 278 (665)
Q Consensus 203 ~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 278 (665)
.|++..|.++|+...+ |+...|.+.|+--.+.+.++.|..++++.. .|++.+|--....=.++|+...+..+|...
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6778888888877764 777777777777777777777777776654 366666666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHh----hcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHhccCCch
Q 043580 279 LCDGIAPNDVMIVDLISAC----GRAMAFGEGLQIHSIIVKAGFDCY-DFIQATIIHFYAACGRINLARLQFELGIKDHI 353 (665)
Q Consensus 279 ~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 353 (665)
.+. --|...-..++.++ .+...++.|.-+|+..+..-.... ...+...+..--+.|+.......+-
T Consensus 234 ie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv------- 304 (677)
T KOG1915|consen 234 IEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV------- 304 (677)
T ss_pred HHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh-------
Confidence 542 11222222222222 233445555555555544321110 2223333333333333222111110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-------HHH
Q 043580 354 ASWNALIAGFIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-------TMV 423 (665)
Q Consensus 354 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~ 423 (665)
.+-.--++.+.+.|+ .+|--.+..--..|+.+...++|++.... ++|-.. .|.
T Consensus 305 ----------------~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 305 ----------------GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred ----------------hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 000001222223333 35555555556678888888888887764 455321 111
Q ss_pred HHHHHH---HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHHchhCCCCcchHHHHHHH
Q 043580 424 SVFCAI---ASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY----AKCGSINTAFEVFYHIRDRTTSVSPWNAIICG 496 (665)
Q Consensus 424 ~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 496 (665)
-+=-+| ....+.+.+.++++..++ -++....++..+--+| .++.++..|.+++.......|....|...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 111111 345678888888888877 3444445665544444 46788889999999888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
-.+.+.++.+..++++.++-+ +-|..+|......-...|+.+.|..+|+-..+...+......|.+.|+.-...|.++.
T Consensus 447 ElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 888999999999999999864 4477788888887788899999999999988763333345567777777778899999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc
Q 043580 577 AEEVIRSMP-MKADVVIWGTLLAASR-----IHG-----------NVEVGERAAKSLAG 618 (665)
Q Consensus 577 A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 618 (665)
|..+++++. ..+...+|.++..--. ..| +...|..+|+++..
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 999998886 2344456655554322 333 56778888888853
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-12 Score=118.60 Aligned_cols=265 Identities=11% Similarity=0.034 Sum_probs=197.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
++.......+-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44445555566667788888888888877653 445555555555666667666655555555554 3445567777777
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
.|...|+..+|++.|.+.....|. ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 777788899999998888776333 457888888888888899988888777664 122223344455567888889999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKA-DVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.++|.+.. ++.| |+..++-+.-.....+.+.+|..+|+... .++ ...+++.|+.+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998887 7788 78888888888888888999998887764 112 44567888888999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+++++.+.|.++.++..+|-+|...|+.+.|.+.|.+++..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-10 Score=108.12 Aligned_cols=439 Identities=14% Similarity=0.083 Sum_probs=275.1
Q ss_pred cCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee-eHHHHHHHHhhcCChhHHHHHHH
Q 043580 203 CSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVV-SWGTMIDGYLQVERLSEALTMYR 276 (665)
Q Consensus 203 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 276 (665)
++++..|.++|+.... +++..|--.+..-.+...+..|..++++... |.+. .|---+..=-..|+...|.++|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445555555555553 2333444444444555555555555554433 2111 11111222223455556666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC------
Q 043580 277 AMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK------ 350 (665)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 350 (665)
+..+ ..|+...+.+.|..-.+.+.++.|..+++..+-. .|+...+-..+..-.+.|+...+..+++..+.
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 5554 4566666666665555555666666666555432 24555555555555556666655555554332
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHhCCCchHHHHH--------HHHHHHCCCCC
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKR-----DVYSWSAMISGYAQNEQPNMALEL--------FHGMVDAGVKP 417 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p 417 (665)
.+...+.++..--.++..++.|.-+|+-..+. ....|......=-+-|+.....+. |+.+.+.+ +-
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 12223444444445566667776666544322 122343333333344554433332 34444443 45
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-HHHHHHH--------HHHhcCCHHHHHHHHHHchhCCC-Cc
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-LSAAIID--------MYAKCGSINTAFEVFYHIRDRTT-SV 487 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~A~~~~~~~~~~~~-~~ 487 (665)
|-.++-..++.....|+.+...++++.++..-.+.+.. .+.-.|- .-....+.+.+.++++...+.-| ..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 66677778888888899999999999998754332221 1111111 11356789999999999888733 44
Q ss_pred chHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHH
Q 043580 488 SPWNA----IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYG 562 (665)
Q Consensus 488 ~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 562 (665)
.+|.. ......++.+...|.+++...+. .-|-..+|...|..-.+.+++|....++++.. ...| |..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHH
Confidence 45444 34444578899999999988764 58888999999999999999999999999999 5688 899999
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMKADV----VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--- 635 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--- 635 (665)
..+..-...|+.+.|..+|+-+...|.. ..|.+.+.--...|.+++|..+|+++++..+... .+...++.-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 9999889999999999999999877643 4566666666789999999999999998877655 4665555433
Q ss_pred --hcC-----------ChhHHHHHHHHHHh
Q 043580 636 --DAG-----------RWEDAFSIRKEMRD 652 (665)
Q Consensus 636 --~~g-----------~~~~A~~~~~~~~~ 652 (665)
..| ....|+++|+++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 56678888888754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-12 Score=128.13 Aligned_cols=278 Identities=10% Similarity=0.080 Sum_probs=173.6
Q ss_pred cCCHHHHHHHHhhcCCC--CcchHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHH--HHHHHHHccCcHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR--DVYSWSA-MISGYAQNEQPNMALELFHGMVDAGVKPNEITMV--SVFCAIASSGTLKEGRW 440 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 440 (665)
.|+++.|++.+....+. ++..+.. ...+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555544332 1222222 233335666666666666666552 34433222 22445566666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cc--------hHHHHHHHHHhcCChHHHHHHHH
Q 043580 441 AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VS--------PWNAIICGLAMHGDANLTLKIYS 511 (665)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--------~~~~l~~~~~~~~~~~~a~~~~~ 511 (665)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.... .. +|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 333455566666777777777777777666665211 11 22333333334455566666666
Q ss_pred HHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C
Q 043580 512 DLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D 589 (665)
Q Consensus 512 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 589 (665)
.+.+. .+.+......+..++...|+.++|.+.+++..+. .|+..... +......++.+++.+.+++.. ..| +
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 2456677778888888888888888888877743 44553322 233335588888888887775 334 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+..+..+...|.+.|++++|...++++++..|++.. +..|+.++.+.|+.++|.++|++.+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556777888888888888888888888888888765 667888888888888888888877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=132.05 Aligned_cols=245 Identities=12% Similarity=0.096 Sum_probs=200.6
Q ss_pred CchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSI--TLNDNLSAAIIDMYAKCGSINTAFEV 476 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 476 (665)
+..+|+..|.++... +.-+......+..+|...++++++.++|+.+.+... .-+..+|.+.+-.+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467899999995554 333446667788999999999999999999986432 23557777766443221 12222
Q ss_pred H-HHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 477 F-YHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 477 ~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
+ +.+... +..+.+|.++..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+... +
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~ 483 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G 483 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c
Confidence 2 223333 466889999999999999999999999999985 55 67888888888889999999999999988 6
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+.| +-..|-.|.-.|.+.++++.|+-.|+++. ..| +......++..+.+.|+.|+|+.+++++.-++|.++...+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 677 56667778999999999999999999987 556 566777888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 043580 631 SNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+.++...+++++|+..++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-12 Score=125.35 Aligned_cols=278 Identities=10% Similarity=-0.013 Sum_probs=196.2
Q ss_pred cCChHHHHHHHHhccCC--chh-hHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--hHH--HHHHHHHhCCCchHHHHHH
Q 043580 335 CGRINLARLQFELGIKD--HIA-SWNALIAGFIRNGMIEDARQLFNNMQKRDVY--SWS--AMISGYAQNEQPNMALELF 407 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~~~~~~a~~~~ 407 (665)
.|+++.|++........ ++. .|.....+..+.|+++.|...+.++.+.++. ... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35555555555433321 122 2222334446677777777777776543222 122 2245667778888888888
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHc
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-------LSAAIIDMYAKCGSINTAFEVFYHI 480 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~ 480 (665)
+++.+.. +-+...+..+...+.+.|+++++..++..+.+.+..++.. .+..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8777753 2344556666777777788888888888877765543221 2223333334455667777788877
Q ss_pred hhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch
Q 043580 481 RDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL 558 (665)
Q Consensus 481 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~ 558 (665)
... +.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .| |+
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~ 328 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTP 328 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCH
Confidence 665 557778889999999999999999999999884 5555322 233444569999999999999854 78 78
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
..+..+...+.+.|++++|.+.|+.+. ..|+...+..+..++.+.|+.++|..++++.+.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888899999999999999999999986 66999999999999999999999999999998754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-12 Score=116.59 Aligned_cols=190 Identities=10% Similarity=0.019 Sum_probs=158.2
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSP-WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 541 (665)
.+.-.|+.-.|..-|+..+...|.... |--+...|...++.++....|.+..+.+ +-|+.+|..-.+...-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345578889999999999887444444 8888899999999999999999999875 55788888888888889999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..-|++.+ .+.| +...|-.+.-+..+.+++++++..|++...+ .-+..|+-....+...+++++|.+.|.++++
T Consensus 414 ~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998 5689 7888888888889999999999999998733 4578888899999999999999999999999
Q ss_pred cCCC------CCchHHHHH--HHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 619 LQPS------HGPSRVLLS--NIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 619 ~~p~------~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
+.|. ++..+.+-+ .+-++ +++..|.++++++++.+.+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 9999 554444322 22233 89999999999998876543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=134.37 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=106.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhc-CC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC
Q 043580 359 LIAGFIRNGMIEDARQLFNNM-QK----RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG 433 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 433 (665)
+...+.+.|++++|+++++.. .. .++..|..+.......++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 455666677777777777432 21 24555666666666778888888888888765422 34445555555 6778
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
++++|.+++....+.. +++..+..++..+.+.++++++.++++.+... +.+...|..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888777665433 45555667778888889999998888887654 345667788888889999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCC
Q 043580 511 SDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKA 588 (665)
Q Consensus 511 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 588 (665)
++..+.. +.|......++..+...|+.+++.++++...+. . ..|+..+..++.+|...|+.++|...+++.. .+.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999863 335778888999999999999999999888865 2 3377788889999999999999999999876 334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
|+.....+..++...|+.++|..+.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788888899999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-12 Score=124.82 Aligned_cols=280 Identities=12% Similarity=0.058 Sum_probs=160.5
Q ss_pred cCCHHHHHHHHhhcCCC--Cc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--HHHHHHHHHHccCcHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR--DV-YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI--TMVSVFCAIASSGTLKEGRW 440 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 440 (665)
.|+++.|++.+....+. ++ ..+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444332 11 12223334455556666666666665543 23322 22223455555666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 043580 441 AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWN----AIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
.++.+.+.. +-++.+...+...+...|+++.|.+.+..+.+. ..+...+. ....+....+..+.+.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 223345555666666666666666666666654 12222221 111111222222222334444433
Q ss_pred cC---CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhH---HHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 516 RN---IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKH---YGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 516 ~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++.. ..|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 21 1236677777778888888888888888888754 554331 1111112233467777788777765 334
Q ss_pred -CH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 589 -DV--VIWGTLLAASRIHGNVEVGERAAK--SLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 589 -~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++ ....++++.+.+.|++++|.+.++ ++.+..|++.. +.+|+.++.+.|+.++|.++|++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34 566788888889999999999998 57778887766 55889999999999999999988755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-10 Score=108.05 Aligned_cols=439 Identities=12% Similarity=0.090 Sum_probs=232.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHH--HHHHHH--hcC
Q 043580 160 SVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNV--MLNGFA--KAG 235 (665)
Q Consensus 160 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--ll~~~~--~~~ 235 (665)
+=++.+.+.|++++|.+....++..+ +.+...+..-+-++.+.+++++|+.+.+.-.... +++. +=++|| +.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 34455566677777777777777666 4455555555556666777777775544332211 1111 123332 455
Q ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcccchhhHHHHHHHHH
Q 043580 236 LVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV-MIVDLISACGRAMAFGEGLQIHSIIV 314 (665)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 314 (665)
..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+++..--.. .-..++.+-.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------------- 157 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------------- 157 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----------------
Confidence 66666666654444443344444455555666666666666665543221111 0111111000
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHH---HHHHHhcCCHHHHHHHHhhcC--------CCC
Q 043580 315 KAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNAL---IAGFIRNGMIEDARQLFNNMQ--------KRD 383 (665)
Q Consensus 315 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~--------~~~ 383 (665)
...+. +.+........+|..+ ...++..|++.+|+++++... ..|
T Consensus 158 -----------------------~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 158 -----------------------ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred -----------------------hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 00000 1111111111122222 233455666666666666551 111
Q ss_pred c----------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHH---HHHHccCcHHH--HHHHHHHH---
Q 043580 384 V----------YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVF---CAIASSGTLKE--GRWAHEYV--- 445 (665)
Q Consensus 384 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~--- 445 (665)
. ..--.+.-.+...|+..+|..++...+... .+|........ .++..-.++-. ....++..
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~ 292 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK 292 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH
Confidence 0 122345556777889999999888888765 44443322222 22222211111 11111111
Q ss_pred --------HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHH-H-hcCChHHHHHHHHHHHH
Q 043580 446 --------LNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGL-A-MHGDANLTLKIYSDLEK 515 (665)
Q Consensus 446 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~a~~~~~~~~~ 515 (665)
......-....-+.++.+| .+..+.+.++...+....|.. .+.+++..+ . +...+..+.+++...-+
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1000000011112233333 355566666666655543333 334444333 2 23357788888888776
Q ss_pred cCCCCChHHHHHHHHHhcccChHHHHHHHHH--------HhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 516 RNIKLNSITFIGVLSTCCHAGLVDLGERYFK--------SMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
.............+......|+++.|.+++. .+.+ +.-.+.+...+...|.+.++.+.|..++.+..
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 5322234566667777888999999999999 4443 23345666778888888888887887777664
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 586 ---MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 586 ---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
..+. ...+..+...-.+.|+-++|...++++++.+|++......|..+|+.. +.+.|..+-+.
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 1122 223333444445779999999999999999999999999998888876 44666555433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-11 Score=119.43 Aligned_cols=225 Identities=11% Similarity=0.032 Sum_probs=131.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHH-HHHHHccCcH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSV-FCAIASSGTL 435 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~ 435 (665)
...+...|+++.|...++.+.+. ++.....+...+...|++++|.+.+..+.+.++. +...+..+ ..+.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------ 232 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------ 232 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------
Confidence 33344444444444555544422 4455666666677777777777777777666532 22222111 0000
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 514 (665)
..++..-......+...+.++..... +.++..+..+...+...|+.++|.+++++..
T Consensus 233 ----------------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 233 ----------------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ----------------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 00010001111222333333333322 2355667777777777777888888777777
Q ss_pred HcCCCCChHH---HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch--hHHHHHhhHhhhcCChHHHHHHHHh--C-C
Q 043580 515 KRNIKLNSIT---FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL--KHYGCMVDLLGRAGQLEDAEEVIRS--M-P 585 (665)
Q Consensus 515 ~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~ 585 (665)
+. .||... ...........++.+.+.+.+++..+. .| |+ ....++...+.+.|++++|.+.|+. . .
T Consensus 291 ~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 291 KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 75 333331 111122223346777888888887754 66 55 6677888888888999999998884 3 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..|+...+..+...+.+.|+.++|.++++++++
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568888888888888889999999988888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-08 Score=96.94 Aligned_cols=507 Identities=12% Similarity=0.112 Sum_probs=245.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCC-----CCcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcC
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCST-----LDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQND 134 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 134 (665)
+|-.-+..+.++|++......|+.... .....|...+...-..+-++-+..++++..+-++..-+-.|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 344444445555555555555544322 123344444444444455555555555544444444455555555555
Q ss_pred ChHHHHHHHHHhHHcC------CCCCHhhHHHHHHHHhccCChHHHHH---HHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 135 CWREALEVFRDMRILG------VIPNEVTLASVISSSVHLGGIWECRM---LHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 135 ~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
++++|-+.+....... .+-+...|.-+-....+..+...... ++..+...-...--..|.+|.+.|.+.|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 5555555554443211 12233344444444333333322221 12121111111123455566666666666
Q ss_pred HHHHHHHHhhccCC--CcccHHHHHHHHHhc----------------C------CHHHHHHHHhhCCC------------
Q 043580 206 LVEARSLFDEMKER--NIVSWNVMLNGFAKA----------------G------LVELARELFERIPS------------ 249 (665)
Q Consensus 206 ~~~a~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~------------ 249 (665)
+++|..++++..+. .+.-++.+.++|++- + +++-....|+.+..
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 66666666555431 112233333332211 1 12222333333321
Q ss_pred ---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCC
Q 043580 250 ---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPN------DVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDC 320 (665)
Q Consensus 250 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 320 (665)
.++..|..-+ -+..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.
T Consensus 344 Qn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 1222333222 22356667777777777654 3332 2345566667777888888888888777765443
Q ss_pred c---hhHHHHHHHHHHhcCChHHHHHHHHhccC---------------------CchhhHHHHHHHHHhcCCHHHHHHHH
Q 043580 321 Y---DFIQATIIHFYAACGRINLARLQFELGIK---------------------DHIASWNALIAGFIRNGMIEDARQLF 376 (665)
Q Consensus 321 ~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 376 (665)
- ..++.....+-.+..+++.|.++.+.... .+...|...++..-..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 34555555666667777777777754221 12234555555556666777777777
Q ss_pred hhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-HHHHHHHHH---HccCcHHHHHHHHHHHHHcC
Q 043580 377 NNMQKRDVYSW---SAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-TMVSVFCAI---ASSGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 377 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~ 449 (665)
+.+.+-.+.+= -.....+-.+.-++++.++|++-...-..|+.. .++..+.-+ .....++.|..+|+.+++ |
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 76655422222 122222333445666666666544433334432 223323222 223356777777777776 4
Q ss_pred CCCChh--HHHHHHHHHHhcCCHHHHHHHHHHchhCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 450 ITLNDN--LSAAIIDMYAKCGSINTAFEVFYHIRDRTT---SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 450 ~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
.+|... +|-.....--+-|-...|+.++++.....+ -...|+..|.-....=.+.....+|++.++. -|+...
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~ 657 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKA 657 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHH
Confidence 443331 111112222234566666777766555411 1235666665544444455555666666663 454433
Q ss_pred HH---HHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCCh
Q 043580 525 FI---GVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 525 ~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 574 (665)
-. .....-++.|..+.|..++....+- +.| +...|.+.=..=.+.|+-
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~--~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQI--CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--CCCcCChHHHHHHHHHHHhcCCH
Confidence 22 2233445567777777776665542 334 555566655555566663
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-10 Score=98.34 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 469 SINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
++.-|...|+.+-+. ..++..-..+.+.+.-..++++++-++.....-- ..|...--.+.++.+..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 344455555554443 2233344556666666667777777777666543 333333334677888888888888888
Q ss_pred HHhHhhcCCCCChhHHH-HHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 546 KSMKSVYNVEPDLKHYG-CMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLA-ASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 546 ~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
-++... .++ |..+|. .|+++|.+.++++-|.+++-++..+.+..++..++. -|.+.+.+--|.+.+..+-.++|..
T Consensus 417 ~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 417 IRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 877632 222 444444 467788888888888888877765555556555554 4888888888888888877777754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=113.80 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=166.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|.+.+++..... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 4556677888888999999999998887763 345677888888999999999999999998864 44667788888889
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.+.+++..+. ...| ....+..+..++...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999864 2233 56677788999999999999999999876 233 567888899999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888888999999999999999998887553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-09 Score=104.48 Aligned_cols=270 Identities=12% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDV---YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 439 (665)
+...+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.--|...|+..+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 3344444555555555443322 23344444555566655555555555553 2334455555555555566666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI 518 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 518 (665)
++|.+......... ..+-.....|.-.|..+.|+..+....+.-| ....+--+..-|.+.++.+.|.+.|.+.....
T Consensus 333 ry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 333 RYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 66666544321111 2345566667777777777777766655522 22234445556777788888888888777642
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVV 591 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 591 (665)
+.|+..++-+.-.....+.+.+|..+|+...... .-.+ ...+++.|..+|.+.+++++|+..+++.. .+.+..
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 4466677777777777888888888888776311 1112 45568888999999999999999998876 445788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
++.+++..|...|+++.|+..|.+++.+.|++..+...|+.+..
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 88899999999999999999999999999999887777766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-10 Score=99.68 Aligned_cols=290 Identities=11% Similarity=0.137 Sum_probs=185.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
+++.++|.++|-+|.+. -+-+..+-.+|-+.+.+.|..|.|+++.+.+.++. |...-..
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr----------------- 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQR----------------- 106 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHH-----------------
Confidence 56788888888888763 12233444566667777788888888877776642 1111000
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRD---VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 421 (665)
....-.|.+-|...|-+|.|+.+|..+.+.+ ......++..|....+|++|+++-+++.+.+-.+..+-
T Consensus 107 --------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 107 --------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred --------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 0122345566777788888888888877643 34566788888889999999999888887665444322
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
.. ..|..+...+....+.+.|...+.+..+. +..+..--.+...+...
T Consensus 179 IA-------------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 179 IA-------------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK 227 (389)
T ss_pred HH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc
Confidence 11 11333444555556677777777776665 33344555566677778
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
|+++.|.+.|+...+.+..--+.+...|..+|.+.|+.++....+.++.+. .+....-..+.+.-....-.+.|...
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHH
Confidence 888888888888887754444567777888888888888888888887743 45555555555555444445555554
Q ss_pred -HHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHh
Q 043580 581 -IRSMPMKADVVIWGTLLAASRI---HGNVEVGERAAKSLA 617 (665)
Q Consensus 581 -~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 617 (665)
.+.+..+|+...+..|+..... .|...+....++.++
T Consensus 305 l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 305 LTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 4555677888888777766543 333455555555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-10 Score=102.38 Aligned_cols=286 Identities=12% Similarity=0.030 Sum_probs=176.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
.|++..|.++..+-.+++-.| ...|..-..+....|+.+.+...+.++.+..-.++..+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt----------------- 158 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT----------------- 158 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH-----------------
Confidence 677888888877776665443 34555566666677777777777777666532333333333
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNM---QKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT 421 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 421 (665)
..+.....|+++.|..-++++ ...++........+|.+.|++.....++..|.+.|.--+...
T Consensus 159 --------------rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 159 --------------RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 333444444444444444433 344677788888888888888888888888888875544322
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
-.. ...++..+++-....+..+.-...|+..... ..++..-..++.-+...
T Consensus 225 ~~l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 225 ARL----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHH----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 100 0112222333333333333344455555544 34455566666667777
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
|+.++|.++.++..+++..|+ ....-.+.+-++...-++..++..+. .| ++..+.+|...|.+.+.|.+|.+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~---h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ---HPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh---CCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777777666665 12222445566666666666666643 34 45677777777777777777777
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 580 VIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 580 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
.|+... ..|+..+|..+..++.+.|+.+.|.+..++++
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777654 55777777777777777777777777777765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-08 Score=96.26 Aligned_cols=599 Identities=12% Similarity=0.075 Sum_probs=340.2
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHH------HhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhh
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIF------KSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACN 93 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 93 (665)
.|+.......=++|+..- .--.+|..-+ -.+..|+...|-.+-+++ +.+.-.+.+| +..|-
T Consensus 40 sp~k~~~~lYERal~~lp---~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~------er~lv~mHkm----pRIwl 106 (835)
T KOG2047|consen 40 SPDKQRNLLYERALKELP---GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCF------ERCLVFMHKM----PRIWL 106 (835)
T ss_pred CChHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHH------HHHHHHHhcC----CHHHH
Confidence 666666655557777752 2223333333 135567777776666555 3445555555 55787
Q ss_pred HHHHHHHhcCChhhHHHhhhcCCC-----CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhcc
Q 043580 94 IMISGYIRNDRLNDAREVFDKTPI-----KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168 (665)
Q Consensus 94 ~ll~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 168 (665)
..+..+.++|++......|++... .....|...+......+-++-+..++.+..+. ++..-.--|..++..
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhc
Confidence 888888999999999998886432 34467888999888999999999999999865 333456667788899
Q ss_pred CChHHHHHHHHHHHHHh------cCCchhHHHHHHHHHhccCCH---HHHHHHHhhccC--CCc--ccHHHHHHHHHhcC
Q 043580 169 GGIWECRMLHGLVIKLM------IDGFVIISTNLLNMYCVCSSL---VEARSLFDEMKE--RNI--VSWNVMLNGFAKAG 235 (665)
Q Consensus 169 ~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~~--~~~~~ll~~~~~~~ 235 (665)
+++++|.+.+...+... -+.+...|..+-+..++.-+. -....+++.+.. +|. ..|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999888776432 345666777776666655432 234456666654 443 47999999999999
Q ss_pred CHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHH--HCCCCCCHHHHHHHHHHhhcccchhhHHHHHH
Q 043580 236 LVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAML--CDGIAPNDVMIVDLISACGRAMAFGEGLQIHS 311 (665)
Q Consensus 236 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 311 (665)
+++.|..++++... -++..|..+.++|++-....-+..+ + +. +.|-+-+.......+..+...-+.. -.++.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~~~lN 338 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLELHMARFESLMNRR--PLLLN 338 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHHHHHHHHHHHHhcc--chHHH
Confidence 99999999998775 3555677777777643221111111 0 11 1111111111111111110000000 00000
Q ss_pred H-HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc---cCC------chhhHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 043580 312 I-IVKAGFDCYDFIQATIIHFYAACGRINLARLQFELG---IKD------HIASWNALIAGFIRNGMIEDARQLFNNMQK 381 (665)
Q Consensus 312 ~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 381 (665)
. +...+ +.+...+..-+ -...|+..+....+... +.| -...|..+.+.|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn-~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQN-PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcC-CccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 0 00100 11111111111 11122222222222211 111 112344555555555555555555555443
Q ss_pred CCcc-------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-----------------CChhHHHHHHHHHHccCcHHH
Q 043580 382 RDVY-------SWSAMISGYAQNEQPNMALELFHGMVDAGVK-----------------PNEITMVSVFCAIASSGTLKE 437 (665)
Q Consensus 382 ~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------------p~~~~~~~ll~~~~~~~~~~~ 437 (665)
-+-. +|......=.++.+++.|+++.+......-. -+...+...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 2211 2333333333445555555555544321101 122234444444555677888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCc-chHHHHHHHHHh---cCChHHHHHHHH
Q 043580 438 GRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSV-SPWNAIICGLAM---HGDANLTLKIYS 511 (665)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 511 (665)
...+++.+++..+.....+.| ....+-...-++++.+++++-... .|++ ..|+..+.-+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 888999998877654333332 333445666788899999887776 3333 357766665543 346889999999
Q ss_pred HHHHcCCCCChHH--HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C
Q 043580 512 DLEKRNIKLNSIT--FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M 586 (665)
Q Consensus 512 ~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (665)
+.++ |.+|...- |......-.+.|....|+.+++++.. ++++ -...|+..|.--...=-......+++++. .
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 9998 66664432 22222223346888899999999875 5666 35667776665444433444555565554 2
Q ss_pred CCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHhccC-CC-CCchHHHHHHHHHhcCChhHHHHH
Q 043580 587 KADVVIWGT---LLAASRIHGNVEVGERAAKSLAGLQ-PS-HGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 587 ~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
-|+...-.. +...-.+.|..+.|..+|....++- |. +...|...-..-.+.|+.+.-++.
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 255444333 2333457899999999998887764 43 344577777777888884444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-07 Score=91.83 Aligned_cols=612 Identities=10% Similarity=0.009 Sum_probs=348.0
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCC---CcchhhHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTL---DPVACNIMI 96 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll 96 (665)
+|-..++---+--|-+.+.+.......+.+++ +.+-...+.....-.+...|+-++|.......... +.++|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 44444444444556677778888888888887 44444555555566666778899998888877664 456777666
Q ss_pred HHHHhcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHH
Q 043580 97 SGYIRNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWE 173 (665)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 173 (665)
-.+-...++++|...+.... +.|...|.-+.-.-++.++++..........+.. .-....|.....+..-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 66666778999999888644 3344566666666677788888888777777652 2234466777777778888888
Q ss_pred HHHHHHHHHHHhc-CCchhHHHHH------HHHHhccCCHHHHHHHHhhccCC--Ccc-cHHHHHHHHHhcCCHHHHHHH
Q 043580 174 CRMLHGLVIKLMI-DGFVIISTNL------LNMYCVCSSLVEARSLFDEMKER--NIV-SWNVMLNGFAKAGLVELAREL 243 (665)
Q Consensus 174 a~~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~ 243 (665)
|..+++...+... .|+...+... .......|.++.|.+.+...... |.. .-..-...+.+.++.++|..+
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888888887763 4555544432 23455677788888777665531 211 223345567788899999999
Q ss_pred HhhCCC--CCeeeHHHHH-HHHhhcCChhHHH-HHHHHHHHCCCCCCHHHHH-HHHHHhhcccchhhHHHHHHHHHHhCC
Q 043580 244 FERIPS--KDVVSWGTMI-DGYLQVERLSEAL-TMYRAMLCDGIAPNDVMIV-DLISACGRAMAFGEGLQIHSIIVKAGF 318 (665)
Q Consensus 244 ~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~ 318 (665)
+..+.. ||...|...+ .++.+-.+.-+++ .+|...-+. .|...... .=+.......-.+....++....+.|+
T Consensus 242 y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 888875 4444444443 4443333333333 555555432 12111111 111111112223334455666666666
Q ss_pred CCchhHHHHHHHHHHhcCChHHH---HHHHH-------------hc--cCCchhh--HHHHHHHHHhcCCHHHHHHHHhh
Q 043580 319 DCYDFIQATIIHFYAACGRINLA---RLQFE-------------LG--IKDHIAS--WNALIAGFIRNGMIEDARQLFNN 378 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a---~~~~~-------------~~--~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 378 (665)
++-- ..+...|-.-...+-. ...+. .+ -+|.... +-.++..+-+.|+++.|+..++.
T Consensus 320 p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5432 2222222221111110 11111 11 1344443 34577888899999999999998
Q ss_pred cCCCCcch---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC
Q 043580 379 MQKRDVYS---WSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT--LN 453 (665)
Q Consensus 379 ~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~ 453 (665)
.....+.. |-.-...+...|+++.|..++++..+.. .||...-..-..-..+++..++|.++...+.+.|.. .+
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 88776554 4444577888899999999999888764 455544445566677888899999888888776641 01
Q ss_pred hh----HH--HHHHHHHHhcCCHHHHHHHHHHchhC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 454 DN----LS--AAIIDMYAKCGSINTAFEVFYHIRDR-------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 454 ~~----~~--~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
.. +| ..=..+|.+.|++..|.+-|..+... +-|..+| |.+.|-+..=+++++.--.. ..
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhty------c~rk~tlrsYv~ll~~~d~L--~~ 547 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTY------CMRKGTLRSYVELLEWEDNL--RS 547 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHH------HHhcCcHHHHHHHHHHHHhh--cc
Confidence 00 11 11234566777777777666555443 1111111 22333332222222211111 11
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCC-CChhHHHH----HhhHhhhc-CChHHHHHHHHhCC---------
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVE-PDLKHYGC----MVDLLGRA-GQLEDAEEVIRSMP--------- 585 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~----l~~~~~~~-g~~~~A~~~~~~~~--------- 585 (665)
.+.-+. -...|++++-+|.+..... +....... .-+...+. .+-.+|...-+.+.
T Consensus 548 ~p~y~~----------Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s 617 (700)
T KOG1156|consen 548 SPYYLR----------AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKS 617 (700)
T ss_pred ChHHHH----------HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111 1234555555555431000 10111111 11111111 11112221111110
Q ss_pred -----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 043580 586 -----MKADVVIWGTLLAASRIHGN-VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 586 -----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
..||.+ -++..+.+..+ .++|..++.......++.+..+..-..+|.+.|++.-|.+.++++.......++
T Consensus 618 ~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 618 QSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred ccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 113333 34555666665 578999999999999999999999999999999999999999888765554444
Q ss_pred C
Q 043580 660 G 660 (665)
Q Consensus 660 ~ 660 (665)
-
T Consensus 695 l 695 (700)
T KOG1156|consen 695 L 695 (700)
T ss_pred c
Confidence 3
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-09 Score=102.20 Aligned_cols=483 Identities=15% Similarity=0.097 Sum_probs=272.0
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh---ccCChHHHHHHHHHHHHHhcCCch-----hHHHHHHHHHhcc
Q 043580 132 QNDCWREALEVFRDMRILGVIPNEVTLASVISSSV---HLGGIWECRMLHGLVIKLMIDGFV-----IISTNLLNMYCVC 203 (665)
Q Consensus 132 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~ 203 (665)
..++.+.++.-+.....++...+..++..+...+. ..++.+++ ++-..+.....|.. ..+..++.-..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766655443 44555555 33333333222221 1111111111111
Q ss_pred CCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 204 SSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 204 g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
+++ +.|...|..+--++...|+++.+.+.|++... .....|..+...|...|.-..|+.+++.-..
T Consensus 317 ~~~-----------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKF-----------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 211 24566777777888888999999999988765 3456788888889999998899999887665
Q ss_pred CCCCCCHHH-HHHHHHHhh-cccchhhHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchh
Q 043580 281 DGIAPNDVM-IVDLISACG-RAMAFGEGLQIHSIIVKAG--F--DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIA 354 (665)
Q Consensus 281 ~g~~p~~~~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (665)
..-.|+..+ +...-..|. +.+..+++..+...+.... . ...+..+..+.-+|...-.. ++..
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~~~ 453 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------ANLK 453 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CCCh
Confidence 433354433 333333343 4567777777666665521 1 11112222222222211100 0000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc
Q 043580 355 SWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS 431 (665)
Q Consensus 355 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 431 (665)
+ .+.....++.+.+++..+ .|+.+..-+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+..
T Consensus 454 s--------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa 525 (799)
T KOG4162|consen 454 S--------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA 525 (799)
T ss_pred H--------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 0 000012233344444322 13333223333344555666666666666655444555555555555556
Q ss_pred cCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH--------------------------chhC-
Q 043580 432 SGTLKEGRWAHEYVLN-NSITLNDNLSAAIIDMYAKCGSINTAFEVFYH--------------------------IRDR- 483 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------------~~~~- 483 (665)
.+++.+|+.+.+...+ .|...... ..-+..-..-++.+++...... +.-.
T Consensus 526 ~kr~~~Al~vvd~al~E~~~N~~l~--~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGDNHVLM--DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhc--hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 6666666666555542 22110000 0001111112333333222111 1111
Q ss_pred --CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C------hHHHHHHHHHhcccChHHHHHHHHHHhHhhc
Q 043580 484 --TTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL--N------SITFIGVLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 484 --~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
+.+ +.++..+..-....+....-... +...-+.| + ...|......+.+.+..++|...+.+..
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~--- 677 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS--- 677 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---
Confidence 111 11222222211111110000000 11111122 2 1245556677788889999998888887
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCCchH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGER--AAKSLAGLQPSHGPSR 627 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~ 627 (665)
++.| ....|......+...|++++|.+.|.... ..| .+.+...+..++.+.|+...|.. ++..+++++|.++.+|
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 5567 78888888899999999999999998875 455 57888999999999999888888 9999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+.||.++.+.|+.+.|.+.|.-+.+..-
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-10 Score=102.47 Aligned_cols=279 Identities=11% Similarity=0.113 Sum_probs=207.8
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHH
Q 043580 366 NGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAH 442 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 442 (665)
.|++.+|+++..+-.+. ....|-.-+.+..+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 47777777777765433 333455555666777888888888888877533555556666677778888888888888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CC-------cchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TS-------VSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
+.+.+.+ +-.+.+.....++|.+.|++.....++..+.+.+ .+ ..+|..++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8877765 3344566777888888888888888888887751 11 225777777777777777777778777
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVV 591 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 591 (665)
-.+ .+.++..-.+++.-+...|+.++|.++.++..++ +..|+ ...++ ...+-++.+.=++..++.. .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 3566777788888899999999999999999877 66665 22222 2335566666555555543 223568
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+.+|+..|.+.+.+.+|...++.++...|+... +..++.++.+.|+..+|.++.++.+-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8899999999999999999999999999998777 89999999999999999999999874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=107.87 Aligned_cols=226 Identities=12% Similarity=0.043 Sum_probs=168.2
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCC
Q 043580 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGD 502 (665)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 502 (665)
.+..+|.+.|.+.+|.+.++..++.. |-+.+|..|-+.|.+..++..|..++.+-.+..|. +.....+...+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 34445555555555555555444432 33344555666777777777777777776666343 3334456667777788
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 503 ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
.+.|.++++...+.. +.+.....++...|.-.++++-|+.+++++.+. |+ .++..|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888888764 456667777778888888899999999998876 54 367788888888888899999888888
Q ss_pred hCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 583 SMP---MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 583 ~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.. ..| ..+.|..+.......||+..|.+.++-++.-+|++...+..|+-+-.+.|+.++|+.++..+.+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 875 223 467888888888899999999999999999999999999999999999999999999998886643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-09 Score=95.44 Aligned_cols=443 Identities=10% Similarity=0.041 Sum_probs=236.4
Q ss_pred HHhcCChhhHHHhhhcCCCC----CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHH
Q 043580 99 YIRNDRLNDAREVFDKTPIK----CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWEC 174 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 174 (665)
+...+++..|..+++--..- ...+--.+..++...|++++|...++.+.+.. .|+...+..+.-+..-.|...+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34445555555555432211 11122334455566677777777777766643 34444444444444455555555
Q ss_pred HHHHHHHHHHhcCCchhHHH-HHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC--C
Q 043580 175 RMLHGLVIKLMIDGFVIIST-NLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK--D 251 (665)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~ 251 (665)
+.+-... |+..... -|.+.-.+.|+-++-..+-..+.+.. .---++.+...-...+++|++++.++... +
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5544332 2222222 23344445555555554444443311 22223334444445567777777766543 2
Q ss_pred eeeHHH-HHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043580 252 VVSWGT-MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIH 330 (665)
Q Consensus 252 ~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (665)
-...|. +.-+|.+..-++-+.++++--.+. ++-++...+.......+.-+-..|.+-.+.+.+.+-..-+ .+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~ 257 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIE 257 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHH
Confidence 223332 334566666677777777666653 3333333333333333322222233333333332211111 111
Q ss_pred HHHhc-----CChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCC------
Q 043580 331 FYAAC-----GRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQ------ 399 (665)
Q Consensus 331 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 399 (665)
-+++. .+-+.|.+++-..+..-+..-..|+-.|.+++++.+|..+.+++...++.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 12221 2234444444333333344455667778899999999999998876666655444444444443
Q ss_pred -chHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 043580 400 -PNMALELFHGMVDAGVKPNE-ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVF 477 (665)
Q Consensus 400 -~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 477 (665)
..-|...|+..-+.+..-|. ..-.++...+.-..+++++.-++..+...-...|...++ +..+++..|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 33455555554444433222 223344455555567778887777776655445555444 778888889999999998
Q ss_pred HHchhC-CCCcchHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH-HHHHHHHhcccChHHHHHHHHHHhHhhcCC
Q 043580 478 YHIRDR-TTSVSPWNA-IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT-FIGVLSTCCHAGLVDLGERYFKSMKSVYNV 554 (665)
Q Consensus 478 ~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 554 (665)
-.+... -.+..+|.. |..+|.+.++++.|..++-++ +-+.+..+ ...+..-|.+.+.+--|-+.|+.+. .+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~l 490 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE---IL 490 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---cc
Confidence 887764 134445554 556778888888887665433 32333333 3444567788888888888888887 45
Q ss_pred CCChhHHH
Q 043580 555 EPDLKHYG 562 (665)
Q Consensus 555 ~p~~~~~~ 562 (665)
.|+++.|.
T Consensus 491 DP~pEnWe 498 (557)
T KOG3785|consen 491 DPTPENWE 498 (557)
T ss_pred CCCccccC
Confidence 78777663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=101.77 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=139.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
...|.-+|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++.. .+.| +....|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 4456678888899999999998888864 4456688888899999999999999999988 5588 788889999999
Q ss_pred hhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 569 GRAGQLEDAEEVIRSMPMKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
|..|++++|...|+++...| -..+|..++.+..+.|+++.|...++++++++|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999987554 36788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 043580 645 SIRKEMRDCGM 655 (665)
Q Consensus 645 ~~~~~~~~~~~ 655 (665)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988877654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-10 Score=99.73 Aligned_cols=291 Identities=10% Similarity=0.113 Sum_probs=189.4
Q ss_pred cCCHHHHHHHHhhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHccCcHHHHH
Q 043580 366 NGMIEDARQLFNNMQKRDVYSW---SAMISGYAQNEQPNMALELFHGMVDAGVKPNE---ITMVSVFCAIASSGTLKEGR 439 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~ 439 (665)
.++.++|.++|-+|.+.|+.++ -++.+.|-+.|..|.|+.+-+.+.++.--+.. ...-.+..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556666666666665554443 34666666677777777776666653211111 12223445556667777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 440 WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS------PWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
.+|..+.+.+ ..-......|+..|-...++++|+++-.++...++... .|..+...+....+.+.|..++++.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777666533 22233445677788888888888888877776533321 3566677777788889999999988
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV 590 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 590 (665)
.+.+ +.....-..+.......|+++.|.+.++.+.+. +| -..+...|..+|...|+.++....+.++. ..+..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8764 333444445667778889999999999998876 45 46677888899999999999998887765 44555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCCCc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--DAGRWEDAFSIRKEMRDCGMKRLPGF 661 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 661 (665)
..-..+...-....-.+.|...+.+-+...|+--..+..+.--+. .-|...+-+-.++.|....++..|.|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555555555444455677777777777777776554433332232 23457777788888887777766654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-07 Score=90.49 Aligned_cols=415 Identities=12% Similarity=0.127 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHH-----HHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS-KDVVSWG-----TMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISAC 297 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (665)
+..+...|.+.|-.+.|++.+..+.+ ....... -.+-.|...-.++.+.+.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677778899999999988877654 1111111 12234445567889999999999988888888777777666
Q ss_pred hcccchhhHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch-------------
Q 043580 298 GRAMAFGEGLQIHSIIVK-----------AGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI------------- 353 (665)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------- 353 (665)
...=..+...++|+.... .++..|+.+....+.+.++.|++.+.+++.+..---|+
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 665555555666655443 14567888888999999999999998888753221111
Q ss_pred -----------hhHHHHHHHHHhcCCHHHHHHHHhhcCCC----------------------------CcchHHHHHHHH
Q 043580 354 -----------ASWNALIAGFIRNGMIEDARQLFNNMQKR----------------------------DVYSWSAMISGY 394 (665)
Q Consensus 354 -----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~l~~~~ 394 (665)
..+..=+-.|.-.++..+-.++|-+-..| .......+..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 11111111222223333333333222211 111222223333
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHH----------HHHHHHHHHHc-----------C----
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKE----------GRWAHEYVLNN-----------S---- 449 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~-----------~---- 449 (665)
-+.++..--+.+++.....| .-+..+++.+...|...++-.+ ...+-+...+. |
T Consensus 849 EkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 34445555555666666666 3467777777777765543221 11111111111 1
Q ss_pred ----CCCChhHHHHHHHHHHhcCCHHHH-----------HHHHHHchhC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 450 ----ITLNDNLSAAIIDMYAKCGSINTA-----------FEVFYHIRDR----TTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 450 ----~~~~~~~~~~l~~~~~~~~~~~~A-----------~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
+......|....+.+.+..+.+-= ..+++...+. ..|+.....-+.++...+-+.+.++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 111112333333333333333221 1233333332 455666677777777777788888888
Q ss_pred HHHHHcCCCC--ChHHHHHHHHHhc---------------------------ccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 511 SDLEKRNIKL--NSITFIGVLSTCC---------------------------HAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 511 ~~~~~~~~~p--~~~~~~~l~~~~~---------------------------~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
+++.-.+-.. +...-+.++-... ..+-+++|..+|++. ..+....
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf------~~n~~A~ 1081 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF------DMNVSAI 1081 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh------cccHHHH
Confidence 7776432111 1112222222222 233344444444432 2233333
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+.|++ .-+..+.|.++-++. ..+..|..+..+-...|.+.+|++-|-++ ++|..|.-.+.+..+.|+|+
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence 33333 334455555555444 35677888888888888888888877644 67777888888888888888
Q ss_pred HHHHHHHHHHhCCCc
Q 043580 642 DAFSIRKEMRDCGMK 656 (665)
Q Consensus 642 ~A~~~~~~~~~~~~~ 656 (665)
+-.+++..++.+.-+
T Consensus 1151 dLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888888776443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-08 Score=92.21 Aligned_cols=277 Identities=9% Similarity=-0.023 Sum_probs=203.8
Q ss_pred ccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 348 GIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSA---MISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
..+-|......+.+.+...|+.++|+..|++...-|+.+... ..-.+.+.|+.+....+...+.... .-+...+..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 456677788889999999999999999999877655543322 2334467788888877777776532 112222222
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCCh
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDA 503 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 503 (665)
-........+++.|..+-++.++.+ +.+...+-.-..++...|+.+.|.-.|+..... +.+..+|..|+..|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 2334455677888888877777654 223344444556778889999999999888877 45678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHH-HHhc-ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVL-STCC-HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 580 (665)
.+|...-....+. ++.+..++..+. ..|. ...--++|.+++++.. .++| -....+.++..+...|+.++++.+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 9999888776664 345666665552 2332 2334578999999887 5688 477788889999999999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 581 IRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 581 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+++.. .-||...-+.|...+...+.+.+|...|..++.++|++..+..-|
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99876 558888888999999999999999999999999999987765555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-08 Score=96.68 Aligned_cols=473 Identities=11% Similarity=0.039 Sum_probs=238.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHH--h
Q 043580 24 LALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYI--R 101 (665)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~--~ 101 (665)
..+-+=+......|++++|.+....++..+ +.+...+.+=+.++.+.+++++|+.+.+.-........-.+=++|| +
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 344555677888899999999999999888 7778888888899999999999998777655432222222445554 7
Q ss_pred cCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCC-HhhHHHHHHHHhccCChHHHHHHHHH
Q 043580 102 NDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPN-EVTLASVISSSVHLGGIWECRMLHGL 180 (665)
Q Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (665)
.++.++|+..++-..+.+..+-..-.+.+.+.|++++|+++|+.+.+++..-- ...-..++.+-.. ... +.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HH
Confidence 89999999999855555555666667888899999999999999987754311 1111111111100 000 01
Q ss_pred HHHHhcCCchhHHH---HHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCH--HHHHHHHhhCCCCCeeeH
Q 043580 181 VIKLMIDGFVIIST---NLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLV--ELARELFERIPSKDVVSW 255 (665)
Q Consensus 181 ~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~ 255 (665)
+.... .....+|. ...-.+...|++..|+++++....-... .+. .++. |+-.+-+ ...-
T Consensus 164 ~q~v~-~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-------~l~-~~d~~eEeie~el-------~~Ir 227 (652)
T KOG2376|consen 164 LQSVP-EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-------KLE-DEDTNEEEIEEEL-------NPIR 227 (652)
T ss_pred HHhcc-CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------hhc-ccccchhhHHHHH-------HHHH
Confidence 11111 11122222 2344455667777777776655210000 000 0000 0000000 0122
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhcccchhh--HHHHHHHHHHhCCCCchhHHHHHHH
Q 043580 256 GTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLI---SACGRAMAFGE--GLQIHSIIVKAGFDCYDFIQATIIH 330 (665)
Q Consensus 256 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (665)
..|..++-..|+.++|..+|...++.. .+|........ -+.....++-. .+..++......
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l------------- 293 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL------------- 293 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh-------------
Confidence 345556667888888888888887763 33432221111 11211111111 111111110000
Q ss_pred HHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHHh--CCCchHHHHHH
Q 043580 331 FYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRD-VYSWSAMISGYAQ--NEQPNMALELF 407 (665)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~ 407 (665)
.+.....+...-. ...+..........+..+.+.++........ ...+.+++....+ ...+..+.+++
T Consensus 294 -------~~~~l~~Ls~~qk--~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L 364 (652)
T KOG2376|consen 294 -------AEFLLSKLSKKQK--QAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELL 364 (652)
T ss_pred -------HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 0000000000000 0001111111112233334444444443322 1222233322221 11244444444
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH--------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE--------YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
...-+....-........+......|+++.|.+++. .+.+.+.. +.+..++...+.+.++.+.|..++..
T Consensus 365 ~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 365 LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHH
Confidence 444332111112223333444455566666666555 33333333 33445566666666666666666655
Q ss_pred chhC----CCCcch----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHh
Q 043580 480 IRDR----TTSVSP----WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSM 548 (665)
Q Consensus 480 ~~~~----~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 548 (665)
.... .+.... +..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-..+
T Consensus 443 Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 443 AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 5443 222222 3333334456788888999999988865 77888888888888875 356666655444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-07 Score=90.93 Aligned_cols=577 Identities=12% Similarity=0.106 Sum_probs=305.5
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-------------------
Q 043580 26 LVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST------------------- 86 (665)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------- 86 (665)
|..+|+...+ -.++.+.++...|.+.. |...-++.+...+-.......+.+.+=....
T Consensus 513 ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~ 589 (1666)
T KOG0985|consen 513 YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV 589 (1666)
T ss_pred HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc
Confidence 4455565555 45677777777776643 2333445555555555544444443322221
Q ss_pred --C------------CcchhhHHHHHHHhcCChhhHHHhhhcCCCC--Cc-----ccHHHHHHHHhhcCChHHHHHHHHH
Q 043580 87 --L------------DPVACNIMISGYIRNDRLNDAREVFDKTPIK--CC-----VSYTSMIMGFAQNDCWREALEVFRD 145 (665)
Q Consensus 87 --~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~-----~~~~~ll~~~~~~~~~~~a~~~~~~ 145 (665)
| ...-+..+.+.+-+.|-..+|++.+..+..- .+ ..=..+ ..|.-.-.++.+.+.+..
T Consensus 590 ~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclka 668 (1666)
T KOG0985|consen 590 HAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKA 668 (1666)
T ss_pred cchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHH
Confidence 1 0112344556667778888888777665421 11 011112 233334467778888888
Q ss_pred hHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-----------hcCCchhHHHHHHHHHhccCCHHHHHHHHh
Q 043580 146 MRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-----------MIDGFVIISTNLLNMYCVCSSLVEARSLFD 214 (665)
Q Consensus 146 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 214 (665)
|...+++.|..+...+..-|...=..+...++|+..... ++..|+.+.-..|.+-|+.|++.+.+++.+
T Consensus 669 ml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 669 MLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 888877777776666655555544445555555544332 244555666667788888888877777665
Q ss_pred hccC---------------CC---------cccHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------Cee------
Q 043580 215 EMKE---------------RN---------IVSWNVMLNGFAKAGLVELARELFERIPSK-----------DVV------ 253 (665)
Q Consensus 215 ~~~~---------------~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~------ 253 (665)
+-.- +| ..-+-.=+-.|.-.++..+-++++-+-..| |+.
T Consensus 749 esn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~i 828 (1666)
T KOG0985|consen 749 ESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFI 828 (1666)
T ss_pred ccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHH
Confidence 4431 11 011111112223333333333333222211 111
Q ss_pred -----------eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCch
Q 043580 254 -----------SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYD 322 (665)
Q Consensus 254 -----------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (665)
.-.-|..-.-+.++..-....++.....|. -|..+++++...|..+++-.+.. +..++
T Consensus 829 k~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~f----------LkeN~ 897 (1666)
T KOG0985|consen 829 KNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERF----------LKENP 897 (1666)
T ss_pred HHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHh----------cccCC
Confidence 111122222233444444444555555553 35566666666655443322110 00111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhccC--------CchhhHHHHHHHHHhcCCHHHHHHHHhhc-----------C---
Q 043580 323 FIQATIIHFYAACGRINLARLQFELGIK--------DHIASWNALIAGFIRNGMIEDARQLFNNM-----------Q--- 380 (665)
Q Consensus 323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~--- 380 (665)
..-...+.-||...++-.|.-.+++|.- ..-..|....+.+.+..+.+-=.+++.+- .
T Consensus 898 yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~ta 977 (1666)
T KOG0985|consen 898 YYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTA 977 (1666)
T ss_pred cchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhc
Confidence 1112222233333333222222222211 11122333444444444433322222111 0
Q ss_pred ---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhHHHHHHH---------------------------H
Q 043580 381 ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV--KPNEITMVSVFC---------------------------A 428 (665)
Q Consensus 381 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~---------------------------~ 428 (665)
..|+...+.-+.++...+-+.+-+++++++.-.+- .-+...-+.++- .
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHH
Confidence 12555555666666666667777777766653221 111111111111 1
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
+...+-+++|..+|+.. ..+......|++ .-+..+.|.++-++. ..+..|..+..+-.+.|...+|++
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~----n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC----NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh----CChHHHHHHHHHHHhcCchHHHHH
Confidence 12222233333333332 111111222221 223444444444433 345689999999999999998887
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCC
Q 043580 509 IYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKA 588 (665)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (665)
-|-+ ..|+..|.-++..+.+.|.|++-.+++...+++ .-.|... ..|+.+|++.++..+-++++ ..|
T Consensus 1126 Syik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gp 1192 (1666)
T KOG0985|consen 1126 SYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGP 1192 (1666)
T ss_pred HHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCC
Confidence 6633 346778999999999999999999999988876 5556544 46888999999988765554 568
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+......++.-|...|.++.|.-+|... ..+..|+..+...|++..|...-+++
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888889999999999999998888644 44778888888888888887665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=108.86 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=131.1
Q ss_pred hCCCchHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 396 QNEQPNMALELFHGMVDAG-VKPN--EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...+....+.. +.+...++.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777776532 2222 2335555566677777777777777776654 2345667777777777777777
Q ss_pred HHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...|++..+..| +..+|..+..++...|++++|++.+++..+. .|+..........+...++.++|...|++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 7777777776634 3456666777777777777777777777764 34332111112223345667777777765443
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHH--HHHHHhCC-CC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-C
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDA--EEVIRSMP-MK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP-S 622 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~-~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~ 622 (665)
...|+...+ .+. +...|+..++ .+.+.+.. .. | ....|..++..+.+.|++++|+..|+++++.+| +
T Consensus 194 -~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 223332221 222 2233444332 22222211 11 1 234677777777777777777777777777775 4
Q ss_pred CCchHHHHHHH
Q 043580 623 HGPSRVLLSNI 633 (665)
Q Consensus 623 ~~~~~~~l~~~ 633 (665)
.....+.+..+
T Consensus 270 ~~e~~~~~~e~ 280 (296)
T PRK11189 270 FVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=118.73 Aligned_cols=247 Identities=12% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHc---------cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 398 EQPNMALELFHGMVDAGVKPNE-ITMVSVFCAIAS---------SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 398 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
+..++|+.+|++..+. .|+. ..+..+..++.. .+++++|...++++.+.. +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467899999999874 5554 345445444432 234788999999888765 33556777788888999
Q ss_pred CCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
|++++|...|++.....|+ ...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999887454 5678888889999999999999999999864 43 333344455566688999999999
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVV-IWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
+++... ..| ++..+..+..+|...|++++|...++++. ..|+.. .++.+...+...| +.|...++++.+..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998753 235 56667788889999999999999998876 335433 3445555567777 4777777777654333
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 623 HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+.....+..+|.-.|+.+.+.-. +++.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333333366778888988887766 7776653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=103.08 Aligned_cols=238 Identities=12% Similarity=0.094 Sum_probs=181.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 388 SAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
+.+.++|.+.|.+.+|...|+.-.+. .|-+.||..+-.+|.+..++..|..++..-++. ++.+.....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44566666666666666666655553 444455555666666666666666666555543 233333344566677778
Q ss_pred CCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
++.++|.++++...+. +.++.+...+...|.-.++++.|+.+++++...| .-++..|+.+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8899999999988876 5567777888888999999999999999999999 5678889999999999999999999999
Q ss_pred HhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 547 SMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 547 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
+..+. --.| -...|-.+.......|++.-|.+.|+-.. .. .....++.|.-.-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98875 4445 35678888888899999999999999886 33 45788999998899999999999999999999998
Q ss_pred CCchHHHH
Q 043580 623 HGPSRVLL 630 (665)
Q Consensus 623 ~~~~~~~l 630 (665)
-......|
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 76655444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-06 Score=86.79 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHh-ccCCCCCchHHHHH-HHHHhcC-
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAA-SRIHGNVEVGERAAKSLA-GLQPSHGPSRVLLS-NIYADAG- 638 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~-~~~~~~g- 638 (665)
+-++.+...++|++|++.-.+-..+|-..-|..+-.+ +.+.|+..+++.++++-- ..+|.+-.+|..+- ..+.+-|
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt 1376 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGT 1376 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCc
Confidence 3467888999999999998887777877777776655 678999999999998763 45676666554432 2333333
Q ss_pred ChhHHHHHHHH
Q 043580 639 RWEDAFSIRKE 649 (665)
Q Consensus 639 ~~~~A~~~~~~ 649 (665)
+.++|..-+-.
T Consensus 1377 ~~~eay~e~a~ 1387 (1636)
T KOG3616|consen 1377 NCAEAYHEIAD 1387 (1636)
T ss_pred chHHHHHHHHH
Confidence 55655544433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.6e-10 Score=114.37 Aligned_cols=177 Identities=11% Similarity=-0.001 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 400 PNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
+++|...+++..+.. +-+...+..+...+...|++++|...++++.+.+ +.+...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666655532 2233344444455555566666666666665543 22234445555556666666666666666
Q ss_pred chhCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-
Q 043580 480 IRDRTTSVS-PWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP- 556 (665)
Q Consensus 480 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p- 556 (665)
.....|+.. .+..++..+...|++++|...++++.... +| +...+..+..++...|+.++|...+.++.. ..|
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~ 473 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEIT 473 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccch
Confidence 555533322 22233333444556666666666555432 23 233344455555556666666666655542 233
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
+....+.+...|...| ++|...++.+
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 2333344444444444 2444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-10 Score=110.44 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=157.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc-----C-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCC--
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNN-----S-ITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTS-- 486 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-- 486 (665)
+...+...|...|+++.|...++...+. | ..|.. ...+.+...|...+++.+|..+|+++... +++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555555432 1 11222 22234566677777777777777766554 222
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CC
Q 043580 487 --VSPWNAIICGLAMHGDANLTLKIYSDLEKR-----NI-KLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VE 555 (665)
Q Consensus 487 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 555 (665)
..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.+...|+..+++++|..++....+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 224666667777778777777766655431 11 2222 2466677788889999999998887765432 22
Q ss_pred C----ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Q 043580 556 P----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------M--KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAG--- 618 (665)
Q Consensus 556 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 618 (665)
+ -..+++.|...|...|++++|.++++++. . .+ ....++.+...|.+.++++.|..+|.++..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 25689999999999999999999998875 1 12 245678889999999999999999988854
Q ss_pred -cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 619 -LQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 619 -~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..|+++.. |..|+.+|..+|++++|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45666544 77899999999999999999988864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=80.92 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhc
Q 043580 118 KCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVH 167 (665)
Q Consensus 118 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 167 (665)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999988864
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=99.68 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCC 533 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 533 (665)
.+..+...+...|++++|.+.+++.... +.+...+..+...+...|++++|.+.+++.......+ ....+..+...+.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 3344455555556666666665555544 2233455555666666667777777666666532222 3345555666677
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|++++|...+++..+. .| +...+..++..+...|++++|...+++.. .+.+...+..+...+...|+.+.|.
T Consensus 147 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777777777643 45 45667777777777777777777777654 2234555556666677777877777
Q ss_pred HHHHHHhccCC
Q 043580 611 RAAKSLAGLQP 621 (665)
Q Consensus 611 ~~~~~~~~~~p 621 (665)
.+.+.+.+..|
T Consensus 224 ~~~~~~~~~~~ 234 (234)
T TIGR02521 224 RYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhCc
Confidence 77776655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=80.60 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=48.0
Q ss_pred CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043580 250 KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR 299 (665)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (665)
||+.+||++|.+|++.|++++|.++|++|++.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.1e-08 Score=95.08 Aligned_cols=430 Identities=12% Similarity=0.049 Sum_probs=257.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCC--ee
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPSKD--VV 253 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 253 (665)
.++....+..|..+|..|.-+....|++..+.+.|++... .....|+.+-..+...|.--.|..+++....+. +.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3334444678888999999999999999999999998875 345678888888999999999999998765432 32
Q ss_pred eHHHHH---HHHh-hcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHhhc----c-------cchhhHHHHHHH
Q 043580 254 SWGTMI---DGYL-QVERLSEALTMYRAMLCD------GIAPNDVMIVDLISACGR----A-------MAFGEGLQIHSI 312 (665)
Q Consensus 254 ~~~~l~---~~~~-~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~----~-------~~~~~a~~~~~~ 312 (665)
....++ ..|. +-+..++++++-.+.... .+.|-. |..+--+|.. . ....++.+.++.
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~--~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG--YLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH--HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 222222 2233 345566666665555441 133333 3333323221 1 123455666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc----cCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ccc
Q 043580 313 IVKAGFDCYDFIQATIIHFYAACGRINLARLQFELG----IKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVY 385 (665)
Q Consensus 313 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 385 (665)
.++.+ +.|+.+...+.--|.-.++.+.|....++. ...+...|..|.-.+...+++.+|+.+.+..... |-.
T Consensus 470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 66655 334455555556666777777776666543 3445667777777777777777777777655432 111
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH--cCCCCChhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN--NSITLNDNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 463 (665)
....-+..-..-++.++++.....+..- --+.... ...++-....+....+.- ....-.+.++..+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111111122235555555555444321 0000000 000000011111111100 0001111222222211
Q ss_pred HHhcC---CHHHHHHHHHHchhCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 464 YAKCG---SINTAFEVFYHIRDRTTSV------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 464 ~~~~~---~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
....+ ..+.....+.... .|+. ..|......+.+.+..++|...+.+..... +-....|......+..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHhhhhhcccccccCcccccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 11111 1111100000000 1221 235566677888899999998888877642 4456677777778888
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEE--VIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
.|...+|.+.|.... .+.| ++.+..+++.++.+.|+..-|.. ++..+. ..| +...|..++..+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 999999999999988 6799 68899999999999998888877 887775 444 789999999999999999999
Q ss_pred HHHHHHHhccCCCCCch
Q 043580 610 ERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~ 626 (665)
.+.|.-+.++++.+|.-
T Consensus 774 aecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 774 AECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHhhccCCCcc
Confidence 99999999999988753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-08 Score=88.27 Aligned_cols=268 Identities=7% Similarity=-0.022 Sum_probs=200.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHH-HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 043580 382 RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMV-SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAI 460 (665)
Q Consensus 382 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 460 (665)
.|+.....+.+++...|+.+.|+..|++... +.|...+-. ...-.+.+.|+++....+...+.... +.....+-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3788899999999999999999999999876 345443321 12233456778888777777765432 1122222233
Q ss_pred HHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 461 IDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
.......++++.|..+-++.+.. +.+...+-.-...+...|++++|.-.|+..+... +-+...|..++.+|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 34455678899999999888875 3445555555577888999999999999988752 347789999999999999999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHh-hHhh-hcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEPDLKHYGCMV-DLLG-RAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
+|.-+-....+. +.-+..+...+. ..+. ...--++|.+++++.. .+|+ ....+.+...|...|..+.++.++++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999888877753 222666666553 3332 3345688999998875 5665 45667777889999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.+...|+... +..||+++...+.+++|.+.|..++..+.+
T Consensus 464 ~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 464 HLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999998766 899999999999999999999999887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-07 Score=91.87 Aligned_cols=46 Identities=7% Similarity=0.148 Sum_probs=28.9
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHh-hHHHHHHHHhccCChHHHHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEV-TLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~ 178 (665)
....|+++.|..+++... ..|+.. .|..+.......|++-.|...|
T Consensus 454 aid~~df~ra~afles~~---~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE---MGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred ccccCchHHHHHHHHhhc---cCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 345788999988887654 356655 4555555555666655555444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-06 Score=85.85 Aligned_cols=400 Identities=10% Similarity=0.043 Sum_probs=204.2
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-----------CCcchhhHHHHHH
Q 043580 31 RYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCST-----------LDPVACNIMISGY 99 (665)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~ll~~~ 99 (665)
..+..-|+.+.|.+-.+.+... .+|..+..+|.+..+++-|.-.+..|.. .|+.--.+-+.++
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 3455567777777655554433 4788888888888888888877777653 1222222222233
Q ss_pred -HhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 043580 100 -IRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 100 -~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 178 (665)
..-|.+++|+.++.+.++ |..|=..|-..|.+++|.++-+.=-+..+ ..||.....-+...+|.+.|.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 466888888888877654 44555666777888888887765433222 245666666666777888887777
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTM 258 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 258 (665)
+..-...++ ...++. .++....++.+.+.+ ...|......+-..|+++.|+.+++. ...|-++
T Consensus 882 EK~~~hafe-----v~rmL~-----e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~-----A~D~fs~ 944 (1416)
T KOG3617|consen 882 EKAGVHAFE-----VFRMLK-----EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSS-----AKDYFSM 944 (1416)
T ss_pred HhcCChHHH-----HHHHHH-----hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHH-----hhhhhhh
Confidence 654222111 000111 112222233333332 23444444444556777777777665 3345555
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhC----CCCchhHHHHHHHHHHh
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG----FDCYDFIQATIIHFYAA 334 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 334 (665)
++..+-.|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|....... +-.....-..+......
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 56666666666666655442 233444455566666666666666555443210 00000111112222222
Q ss_pred cCCh--HHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------------CCcchHHHHHHHHHhCC
Q 043580 335 CGRI--NLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--------------RDVYSWSAMISGYAQNE 398 (665)
Q Consensus 335 ~g~~--~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~ 398 (665)
.|.- -.|-++|+..- ......+..|-+.|.+.+|+++-=.-.+ .|+...+.-...++...
T Consensus 1019 s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred cCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2211 12222222100 0112233445566666666554322211 25556666667777777
Q ss_pred CchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCCh----hHHHHHHHHHHhcCCHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLND----NLSAAIIDMYAKCGSINTA 473 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~~~~~~A 473 (665)
++++|..++-...+ |...+..| ...+..-..++-+.|.- ..-.|+. .+...+.+.+.++|.+..|
T Consensus 1095 qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 77777777655443 22222222 22222233333333321 1112222 3455666777777877777
Q ss_pred HHHHHHch
Q 043580 474 FEVFYHIR 481 (665)
Q Consensus 474 ~~~~~~~~ 481 (665)
-+-|...-
T Consensus 1165 tKKfTQAG 1172 (1416)
T KOG3617|consen 1165 TKKFTQAG 1172 (1416)
T ss_pred HHHHhhhh
Confidence 76665443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-07 Score=94.69 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=44.4
Q ss_pred HHHhcCC-HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 599 ASRIHGN-VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 599 ~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
-+.+..+ .++|.++++-+.+..|++..++..--.+|.+.|++--|++.+.+
T Consensus 465 kL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 465 KLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3445555 69999999999999999999999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-06 Score=82.24 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=82.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
++-.++..+.+.|+++.|..+++... +..|+ ++.|..-++++...|++++|..++++.. ..||...-...+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 34456667778888888888888887 55774 6667777788888888888888888876 334544444555556
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCc-------hHHH--HHHHHHhcCChhHHHHHHHHH
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGP-------SRVL--LSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~--l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.+.++.++|..++-+-....-+... .|+. =|.+|.++|++.+|++-+..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 6778888888877766543321111 1222 355678888887777655443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-08 Score=93.84 Aligned_cols=98 Identities=20% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHhccCCHHHHHHHHhhccC---CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-eeeHHHHHHHHhhcCChhHH
Q 043580 198 NMYCVCSSLVEARSLFDEMKE---RNIVSWNVMLNGFAKAGLVELARELFERIPS--KD-VVSWGTMIDGYLQVERLSEA 271 (665)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 271 (665)
.+.+..|+++.|...|.+... +|.+.|..-..+|+..|++++|++--.+..+ |+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 456678888888888877664 5666777778888888888888776655543 43 34677788888888888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 043580 272 LTMYRAMLCDGIAP-NDVMIVDLISAC 297 (665)
Q Consensus 272 ~~~~~~m~~~g~~p-~~~~~~~ll~~~ 297 (665)
+.-|.+-++. .| +...+..+..+.
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 8888887763 34 344444454444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-07 Score=92.65 Aligned_cols=575 Identities=13% Similarity=0.033 Sum_probs=287.6
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHhhcCCCC---cchhhHHHHHHHhcCChhhHHHhhhcCCCCCc-----ccHHHHHHH
Q 043580 58 TFIQNSLINLYAKCGLISQAKSMFDSCSTLD---PVACNIMISGYIRNDRLNDAREVFDKTPIKCC-----VSYTSMIMG 129 (665)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ll~~ 129 (665)
...|..|...|...-+...|.+.|++..+.| ...+......|++..+++.|..+.-...+... ..|....-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3478888888888888888999998887754 45677788889999999999888543333221 223334445
Q ss_pred HhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHH
Q 043580 130 FAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEA 209 (665)
Q Consensus 130 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 209 (665)
|.+.+++.+|+.-|+...+..++ |...|..+..+|...|....|.++|.......+. +....--.....+..|++.+|
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 67788888888888888876433 6668888888999999988888888877665432 222222234456677888888
Q ss_pred HHHHhhccC---------CC-cccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH-HHHHHhhcC-C---hhHHHHH
Q 043580 210 RSLFDEMKE---------RN-IVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT-MIDGYLQVE-R---LSEALTM 274 (665)
Q Consensus 210 ~~~~~~~~~---------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-l~~~~~~~~-~---~~~a~~~ 274 (665)
...+..+.. .+ ..++-.+...+.-.|-...|...+++-.+ .+.. +....+... . ...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie----~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE----SFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 888777663 11 11222222333333333333333333211 1111 111100000 0 0122222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccch---h---hHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----ChHH
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAF---G---EGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CG----RINL 340 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 340 (665)
|-... .. .|+.+....+....-+.+.. + .+.+.+-.-. .+..+...+..+...|.+ .| +...
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 32222 11 33333333333322222222 1 0111110000 111122233333332222 22 1234
Q ss_pred HHHHHHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 341 ARLQFELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 341 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
|...+++.++ .+..+|+.|.-. ..-|++.-|.-.|-.-. .....+|..+.-.+.+..+++.|...|...+..
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL- 879 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL- 879 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc-
Confidence 5555655543 334455554433 44466666666654432 225567777777777888888888888877663
Q ss_pred CCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHH--H--cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch--------
Q 043580 415 VKP-NEITMVSVFCAIASSGTLKEGRWAHEYVL--N--NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR-------- 481 (665)
Q Consensus 415 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------- 481 (665)
.| +...+..........|+.-+...++..-. . .|-.++...+-+.......+|+.++-+...+.+.
T Consensus 880 -dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 -DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred -CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 33 33334333333344565666666665522 1 2223333333333334445555544333332222
Q ss_pred --hC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHH----HHHhcccChHHHHHHHHHHhHhhcC
Q 043580 482 --DR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR-NIKLNSITFIGV----LSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 482 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
.. +.+...|.......-+.+.+..|.+...+.+.. ..+-+..+|+.+ ...++..|.++.|...+...-.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~--- 1035 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM--- 1035 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---
Confidence 11 233445555555555556666666655554321 013344444432 2233334444443333222110
Q ss_pred CCCChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 554 VEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
..+..+...-+. ..-.++++++.+.|+++. ...+ ......++.+....+..+.|...+-+...+.|.+.....
T Consensus 1036 -evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll 1113 (1238)
T KOG1127|consen 1036 -EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLL 1113 (1238)
T ss_pred -hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHH
Confidence 111111111111 133466666666666654 1122 233344455555666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.|+-++.-..+-..-....+++
T Consensus 1114 ~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHH
Confidence 6655555444444444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-08 Score=93.75 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHHcC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNS-ITLN--DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
..+.+...+..++... ..|+ ...+..+...|...|+.+.|...|++.... +.+...|+.+...+...|+++.|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666665422 2222 355777888899999999999999998887 44567899999999999999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC
Q 043580 510 YSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD 589 (665)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (665)
+++..+.. +-+...+..+..++...|++++|.+.|++..+ ..|+..........+...++.++|...+++....-+
T Consensus 121 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999853 33566788888888999999999999999985 477433222222334567789999999976542212
Q ss_pred HHHHHHHHHHHHhcCCHHHH--HHHHHHH----hccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 590 VVIWGTLLAASRIHGNVEVG--ERAAKSL----AGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A--~~~~~~~----~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..|.. .......|+...+ ...+.+. .++.|+....|..||.++...|++++|+..|+++++.++
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222321 2233345554333 3222222 355666778899999999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-08 Score=84.90 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL 537 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 537 (665)
.|.-.|...|++..|..-+++..+..| +..+|..+...|.+.|+.+.|.+-|++..... +.+....|....-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 355556666666666666666666533 34466666666666666666666666666643 3355566666666666666
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
+++|...|++........--..+|..+..|..+.|+.+.|...+++.. ..| .+.....+.....+.|++-.|..++++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 666666666666542211135566666666666666666666666654 222 345555666666666666666666666
Q ss_pred HhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 616 LAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
...-.+-....+...+.+-...|+.+.|.++=..+
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66555544454555555566666666665554444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-07 Score=82.01 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHH---HHHHhcCCHHHHHHHHhhcCCCCcchHHHHH---HHHHhCC
Q 043580 325 QATIIHFYAACGRINLARLQFELGIKDHIASWNALI---AGFIRNGMIEDARQLFNNMQKRDVYSWSAMI---SGYAQNE 398 (665)
Q Consensus 325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~ 398 (665)
.-.+...+...|++.+|...|...+..|+..|.++. ..|...|+...|+.-+....+..+..+.+-+ ..+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 345666777778888888888877777777776654 3577777777777777776655444444333 4566778
Q ss_pred CchHHHHHHHHHHHCCCCCCh--h------------HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 043580 399 QPNMALELFHGMVDAGVKPNE--I------------TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMY 464 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (665)
.++.|..-|+...+....-+. . .....+..+.-.|+...++.....+++.. +-+...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 888888888877775321111 0 01122223333444444444444444432 22334444444455
Q ss_pred HhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
...|++..|+.-++...+. ..++..+..+...+...|+.+.++...++.++
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555554444443333 23333444444444555555555555554444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=101.27 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CChHHH
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK--------LNSITF 525 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------p~~~~~ 525 (665)
..+..|...-...++-..|+..+.+..+. +.+......|...|...|.-..|+..++..+....+ ++...-
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 34444555555555555666666666665 334556666667777777777777777776554210 000000
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH 603 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 603 (665)
.. ..+..........++|-.+....+..+|+.+...|.-.|.-.|++++|+..|+.+. .+| |...||.|+..+...
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 00 22333334455566666665543555788999999999999999999999999986 566 678899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+.++|+..|++++++.|.....++.||-.|...|.|+||.+.|-+++...
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987743
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-07 Score=93.84 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
++..+...|...|++++|+++.++.++ ..| .+..|..-+++|-+.|++++|.+.++.+. ..-|...-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 345556677788888888888888874 477 47788888888888888888888888876 223555555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCC--CCCc-----hH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 601 RIHGNVEVGERAAKSLAGLQP--SHGP-----SR--VLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p--~~~~-----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+.|++++|...+......+- .... .| .-.|.+|.+.|++..|++.|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888888877755442 2211 12 3467778889999999888776643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-07 Score=87.11 Aligned_cols=438 Identities=13% Similarity=0.027 Sum_probs=230.1
Q ss_pred HHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC--CCc-ccHHHHHHHHHhcCCHHH
Q 043580 163 SSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--RNI-VSWNVMLNGFAKAGLVEL 239 (665)
Q Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~ 239 (665)
++....|+++.|...|...+...+. +...|+.-..+|...|++++|++=-....+ |+. ..|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 5567889999999999999888755 888999999999999999998876666554 443 478888888999999999
Q ss_pred HHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HhhcccchhhHHHHHH
Q 043580 240 ARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLIS-----ACGRAMAFGEGLQIHS 311 (665)
Q Consensus 240 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~ 311 (665)
|+..|.+-.+. |...++-+..++ ..+.+. |.. .-++..+..+.. .+.....+ ..++.
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~---~~~l~ 153 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAY---VKILE 153 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHH---HHHHH
Confidence 99999988763 344555565555 111111 111 111112211111 11111111 11111
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH---------hcc-------CCchhhHHHHHHHHHhcCC-HHHHHH
Q 043580 312 IIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE---------LGI-------KDHIASWNALIAGFIRNGM-IEDARQ 374 (665)
Q Consensus 312 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---------~~~-------~~~~~~~~~l~~~~~~~~~-~~~a~~ 374 (665)
.+. .+ |+. +..|.+-.++..+.-.+. .+. .|.. ......-..++ .++..
T Consensus 154 ~~~-~~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~- 219 (539)
T KOG0548|consen 154 IIQ-KN--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR- 219 (539)
T ss_pred Hhh-cC--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHHHH-
Confidence 111 11 100 111111111111111110 000 0000 00000000000 00000
Q ss_pred HHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-
Q 043580 375 LFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN- 453 (665)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 453 (665)
...-......+..+..+..+++.|++-+....+.. -+..-++....++...|.+......-....+.|...-
T Consensus 220 -----~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra 292 (539)
T KOG0548|consen 220 -----VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA 292 (539)
T ss_pred -----HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH
Confidence 00011133445566666667777777777666643 2333334444555666665555544444433331100
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHHH
Q 043580 454 -----DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS-ITFIG 527 (665)
Q Consensus 454 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ 527 (665)
...+..+..+|.+.++++.|...|.+......++ ....+....++++...+...-. .|.. .-...
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~ 363 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAYI--NPEKAEEERE 363 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHH
Confidence 0111223345666677777777777655431111 1122223344444444433332 2322 11222
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 604 (665)
-...+.+.|++..|+..|.+++.. .| |...|....-+|.+.|.+..|+.-.+... ..| ....|..=+.++....
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 255667778888888888887754 57 77788888888888888888887766664 233 3444555555666677
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
++++|.+.|+++++.+|++..+...+..++..........++.++
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 788888888888888888877777776666654333334444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-06 Score=77.34 Aligned_cols=409 Identities=11% Similarity=0.069 Sum_probs=220.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHhh
Q 043580 223 SWNVMLNGFAKAGLVELARELFERIPSK---DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDL-ISACG 298 (665)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 298 (665)
-+++.+..+.+..++++|++++....+. +....+.|..+|....++..|-..|+++-. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3667777788888999999988776653 456677888888888999999999998876 45665555432 34556
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcCChHHHHHHHHhcc-CCchhhHHHHHHHHHhcCCHHHHH
Q 043580 299 RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIH----FYAACGRINLARLQFELGI-KDHIASWNALIAGFIRNGMIEDAR 373 (665)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 373 (665)
+.+.+..|+++...|... ....+..+. .....+++..+..+.++.. +.+..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 777788888887776542 112221111 1223344444444444333 233333333334444555555555
Q ss_pred HHHhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH----HHHHHHHHccCcHHHHHHHHHHH
Q 043580 374 QLFNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM----VSVFCAIASSGTLKEGRWAHEYV 445 (665)
Q Consensus 374 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~ 445 (665)
+-|+...+- ....|+..+.. .+.++++.|++...++.++|++-.+..= +-.+.+- ..|+. ..+...
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~S- 238 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQS- 238 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHH-
Confidence 555544332 22334433332 2345555555555555555543211100 0000000 00000 000000
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 446 LNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.-...++.-...+.+.|+++.|.+.+..|..+ ..|+.+...+.-. -..+++....+-+.-+...+ +-..
T Consensus 239 ------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 239 ------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred ------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCCh
Confidence 00112333344567889999999999998876 4566665554322 23455666666666666653 3456
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG-RAGQLEDAEEVIRSMPMKADVVIWGTLLAAS 600 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 600 (665)
.||..++-.||+..-++.|-.++-+-... ...- +...|+.| +++. ..-..++|.+-++.+...-....-...+..-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888888877664332 1111 44444433 3333 3346667766655543110000000111111
Q ss_pred -HhcCCH----HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 601 -RIHGNV----EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 601 -~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
.+..+- -.|++-|++.+++. .+.....+++|+...++..+.+.|+.-.+-..+.
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 111111 12223333333321 2346678899999999999999998876644433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-08 Score=94.94 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--------CCC
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKA 588 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 588 (665)
.+++.+...|.+.|++++|.++++++.+.. +..+ ....++.|...|.+.+++.+|.++|.+.. ..|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 467777777777777777777777766531 2233 34556777888888888888888877754 223
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 589 D-VVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 589 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
+ ..+|..|...|...|++|.|+++.+++.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 4678888888999999999999888885
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-06 Score=85.45 Aligned_cols=390 Identities=12% Similarity=0.074 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHh-C--------CCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchh
Q 043580 22 YELALVSALRYCSAHIAVSQGQQIHSLIFKS-G--------LESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVAC 92 (665)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (665)
+...|..+.+.|.+.++++.|.-++..|... | -.|+ .+-......-...|.+++|+.+|.+....
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3467888899999999999988888877642 1 1232 22223333444679999999999988663
Q ss_pred hHHHHHHHhcCChhhHHHhhhcCCCCC-cccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCCh
Q 043580 93 NIMISGYIRNDRLNDAREVFDKTPIKC-CVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGI 171 (665)
Q Consensus 93 ~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 171 (665)
..|=+.|...|+|++|.++-+.-.+-. ..||..-...+-..++.+.|++.|+..... --..+..|. .++
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p 899 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYP 899 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hCh
Confidence 345566778999999999876543322 246777777777788888888888764211 111111111 111
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 043580 172 WECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKD 251 (665)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (665)
...+.+.+.+. |...|.=-...+-..|+.+.|+.++.... .|-++++..|-.|+.++|-.+-++- .|
T Consensus 900 ~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd 966 (1416)
T KOG3617|consen 900 KQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GD 966 (1416)
T ss_pred HHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--cc
Confidence 11122211111 11222212223334677777777776543 3555666666777777777766543 34
Q ss_pred eeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc---------------chhhHHHHHHHHHHh
Q 043580 252 VVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM---------------AFGEGLQIHSIIVKA 316 (665)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~ 316 (665)
....-.|.+.|-..|++.+|..+|.+.+. |...|+.|-..+ +.-.|-+.|++.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--- 1034 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--- 1034 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---
Confidence 45555677777777888888777766532 333333332221 222222333221
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHH------------Hhcc--CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 043580 317 GFDCYDFIQATIIHFYAACGRINLARLQF------------ELGI--KDHIASWNALIAGFIRNGMIEDARQLFNNMQKR 382 (665)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 382 (665)
| ......+..|-+.|.+.+|.++- .+.+ ..|+...+.-.+.+....++++|..++-...+
T Consensus 1035 g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~- 1108 (1416)
T KOG3617|consen 1035 G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE- 1108 (1416)
T ss_pred c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 1 11233455677777776665443 1222 23556666667777778888888777765432
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHH-CCCCCChh----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVD-AGVKPNEI----TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLS 457 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 457 (665)
|...+. +|+..+..-..++-+.|.- +.-.|+.. .+..+...|.++|.+..|.+-|...-+.
T Consensus 1109 ----~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--------- 1174 (1416)
T KOG3617|consen 1109 ----FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--------- 1174 (1416)
T ss_pred ----HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------
Confidence 222222 2233333333333333321 11234433 3445567788888888777666544221
Q ss_pred HHHHHHHHhcCCHHH
Q 043580 458 AAIIDMYAKCGSINT 472 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~ 472 (665)
-..++++.+.|+.++
T Consensus 1175 l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1175 LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHhcCCcce
Confidence 124555666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-07 Score=79.52 Aligned_cols=306 Identities=12% Similarity=0.061 Sum_probs=179.0
Q ss_pred hhHHHHHHHhcCChhhHHHhhhcCCCC---CcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhcc
Q 043580 92 CNIMISGYIRNDRLNDAREVFDKTPIK---CCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168 (665)
Q Consensus 92 ~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 168 (665)
+.+.+..+.+..++++|++++....+. +....+.|..+|....++..|-+.++.+-.. .|...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY------- 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY------- 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH-------
Confidence 445555555555666655555543322 2334445555555555555555555555443 2333322210
Q ss_pred CChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCC-CcccHHHHHHH--HHhcCCHHHHHHHHh
Q 043580 169 GGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKER-NIVSWNVMLNG--FAKAGLVELARELFE 245 (665)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 245 (665)
-...+.+.+.+.+|+++...|.+. +...-..-+.+ ....+++-.+..+++
T Consensus 84 ---------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 84 ---------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred ---------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 133445666777777777777763 22222222222 234677888888888
Q ss_pred hCCC-CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhH
Q 043580 246 RIPS-KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFI 324 (665)
Q Consensus 246 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (665)
+.+. .+..+.+.......+.|+++.|++-|+...+-|--.....|+..+.. .+.++.+.|++...+++++|+...+..
T Consensus 137 Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 8874 55666666666677899999999999988876433345667666544 466889999999999999886543322
Q ss_pred HH----HHHHHHHhcCCh-HHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHH
Q 043580 325 QA----TIIHFYAACGRI-NLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-----DVYSWSAMISGY 394 (665)
Q Consensus 325 ~~----~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~ 394 (665)
-- ..+++-+ -|+. ..+. ..-+..+|.-...+.+.|+++.|.+.+..|+.+ |+++...+.-.-
T Consensus 216 gIGm~tegiDvrs-vgNt~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 216 GIGMTTEGIDVRS-VGNTLVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred CccceeccCchhc-ccchHHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 10 0000000 0000 0000 000123444445567889999999999999854 777776654332
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEY 444 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 444 (665)
..+++....+-+.-+...+. -...||..++-.||+..-++.|..++.+
T Consensus 288 -~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 288 -MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred -ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23456555555555665533 3346888888888888888888777655
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=97.21 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=65.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCCh
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQL 574 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 574 (665)
..|+++.|++++++. .+.......+..|.+.++++.|.+.++.|. .+..|. +...++.++.. .+++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCchhH
Confidence 345555555544321 233444444555555555555555555554 223332 12222222221 2245
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 043580 575 EDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW-EDAFSIRKEMR 651 (665)
Q Consensus 575 ~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 651 (665)
.+|..+|+++..+ +++.+++.+..++...|++++|...++++++.+|+++.+...++-+....|+. +.+.+++.++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5555555555322 44455555555555555555555555555555555555555555555555554 33444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-07 Score=79.63 Aligned_cols=314 Identities=10% Similarity=0.001 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHH---HHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNAL---IAG 362 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~ 362 (665)
+..-..-+-..+...|++..|+.-|...++.+. .+-..+..-...|...|+...|..-+.+.++..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 334444555666667777777777776665421 1112222334456666766666655555443222222222 345
Q ss_pred HHhcCCHHHHHHHHhhcCCCCcc------------------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDVY------------------SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS 424 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (665)
+.+.|.+++|+.-|+.+.+.++. .....+..+...|+...|++....+.+.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 77888888888888777644221 12233445556778888888888877742 334555556
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChH
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 504 (665)
-..+|...|.+..|+.-++..-+..-.. ...+..+-..+...|+.+.++..+.+..+..|+-...... | +...
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---Y---Kklk 267 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---Y---KKLK 267 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---H---HHHH
Confidence 6677777888877776666655443222 2334445666777777777777777776654443321111 1 1112
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
+..+.++.|.+ ....++|.++.+..+.+.+. .|. ...+..+-.++...|++.+|++
T Consensus 268 Kv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 268 KVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHH
Confidence 22222222221 22334555555555555432 332 2223345555666677777777
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 580 VIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 580 ~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
...+.. ..| |..++..-..+|.-..+++.|+.-|+++.+.+|++..+.
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 766654 334 366666666666666677777777777777777665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-08 Score=87.20 Aligned_cols=147 Identities=8% Similarity=0.075 Sum_probs=108.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 573 (665)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| |...|..+...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC
Confidence 456677777665444322211 11 012235666777777777764 367 78888888888889999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 574 LEDAEEVIRSMP-MKA-DVVIWGTLLAAS-RIHGN--VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 574 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
+++|...+++.. ..| +...+..+..++ ...|+ .++|..+++++++.+|+++..+..|+..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888875 334 677777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCCc
Q 043580 649 EMRDCGMK 656 (665)
Q Consensus 649 ~~~~~~~~ 656 (665)
++++....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 98886543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-06 Score=87.11 Aligned_cols=259 Identities=11% Similarity=-0.007 Sum_probs=159.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChh-HHHHHHHHHH----ccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 043580 391 ISGYAQNEQPNMALELFHGMVDAGVKPNEI-TMVSVFCAIA----SSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMY 464 (665)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 464 (665)
...+...|++++|.+.+++..+. .|+.. .+.. ...+. ..+..+.+.+.+.. .....|+. .....+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHH
Confidence 33456678888888888887775 34332 3221 11222 23444444444433 11222332 3444566788
Q ss_pred HhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HHHHHHHHHhcccChHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLNS--ITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~ 540 (665)
...|++++|...+++.....| +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999888744 456778888889999999999999998887532 1222 245567788889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHH-H--HHhhHhhhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 541 GERYFKSMKSVYNVEPDLKHY-G--CMVDLLGRAGQLEDAEEV---IRS---M-PMKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
|..++++........+..... + .+...+...|....+... ... . ..............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 999999986331111111111 1 223333344433333322 111 1 11111222235666778899999999
Q ss_pred HHHHHHhccCCC---------CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 611 RAAKSLAGLQPS---------HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 611 ~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++.+....-. ........+.++...|++++|.+.+.+++..+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999888543211 23445677788999999999999999988753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-06 Score=85.00 Aligned_cols=467 Identities=13% Similarity=0.062 Sum_probs=235.8
Q ss_pred hHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhh
Q 043580 136 WREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 136 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
...|+..|-+..+..+. =...|..|...|+...|...|.+.|+...+.. ..+........+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555554443221 12356666666666556666777776665554 33445556677777777777777776444
Q ss_pred ccCCCc-----ccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCH
Q 043580 216 MKERNI-----VSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPND 287 (665)
Q Consensus 216 ~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 287 (665)
..+.+. ..|....-.|.+.++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 433221 1222233345566777777777766654 2455666777777777777777777776654 44543
Q ss_pred HHHHHHHHH--hhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHh
Q 043580 288 VMIVDLISA--CGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIR 365 (665)
Q Consensus 288 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 365 (665)
+|.....+ -+..|.+.++...+..+.... .........+.. ++..+...+.-
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE------------------------~~ir~akd~~~ 683 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAE------------------------SVIRDAKDSAI 683 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHH------------------------HHHHHHHHHHH
Confidence 23222222 245566667766666554421 000001111111 11111112222
Q ss_pred cCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc
Q 043580 366 NGMIEDARQLFNNMQK-------R----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT 434 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 434 (665)
.|-..+|...++.-.+ . +...|-.+. .|..+|-... .. .|+......+..-....+.
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhccc
Confidence 2222222222221110 0 111111111 1111221111 00 1222222222111111111
Q ss_pred H---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHHHchhC-CCCcchHHHHHHHHHh
Q 043580 435 L---K---EGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CG----SINTAFEVFYHIRDR-TTSVSPWNAIICGLAM 499 (665)
Q Consensus 435 ~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 499 (665)
. + -+.+.+-.-.+ +..++..+..++.-|.+ ++ +...|...+.+..+. ..+...|+.|... ..
T Consensus 752 l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred CcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 1 1 00011100001 11112222222222221 11 223566667666665 3344456655444 55
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.|++.-+...|-+-+... +-+..+|..+.-.+.+..+++-|...|...+ .+.| |...|-....+....|+.-++.
T Consensus 829 ~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred cchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 567777766666555542 4456677777778888888888888888887 4577 6777766666666778888888
Q ss_pred HHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHH----------HHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 579 EVIRSMP-------MKADVVIWGTLLAASRIHGNVEVGER----------AAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 579 ~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.+|..-. .-|+...|..........|+.+.-+. .+++.++-.|+...+|...+...-+.+.++
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 8776621 11444444433334445555544443 445556677888888888888888888888
Q ss_pred HHHHHHHHHH
Q 043580 642 DAFSIRKEMR 651 (665)
Q Consensus 642 ~A~~~~~~~~ 651 (665)
+|.+...+++
T Consensus 985 ~a~ela~Rli 994 (1238)
T KOG1127|consen 985 AALELATRLI 994 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888777664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-08 Score=81.89 Aligned_cols=90 Identities=9% Similarity=-0.186 Sum_probs=44.0
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+...+...|++++|...|+.+. .. .+...|..+..++...|++++|+..|+++++++|+++..+..+|.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 3444444555555555554443 11 234444444455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhC
Q 043580 642 DAFSIRKEMRDC 653 (665)
Q Consensus 642 ~A~~~~~~~~~~ 653 (665)
+|++.|+++++.
T Consensus 110 eAi~~~~~Al~~ 121 (144)
T PRK15359 110 LAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-07 Score=85.88 Aligned_cols=183 Identities=8% Similarity=-0.073 Sum_probs=126.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---H
Q 043580 452 LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSI---T 524 (665)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~ 524 (665)
.....+..++..+...|+++.|...|+++....|+. ..+..+..++...|++++|...++++.+.. +.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 344566677778888888888888888887764432 356777788888888888888888888753 11222 3
Q ss_pred HHHHHHHhccc--------ChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 525 FIGVLSTCCHA--------GLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 525 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
+..+..++... |+++.|.+.++.+.+. .|+ ...+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44455555543 6788888888888754 563 333322221111 01100 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+...+.+.|++++|+..++++++..|+.+ ..+..++.++...|++++|.++++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999999999988765 56889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-07 Score=91.80 Aligned_cols=222 Identities=13% Similarity=0.010 Sum_probs=174.4
Q ss_pred CCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHH
Q 043580 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIIC 495 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 495 (665)
+|-...-..+...+...|-...|..++++... +..++.+|...|+..+|..+.....+.+|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 33333344556677777888888888877543 456888899999999999988888777788888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 574 (665)
.....--+++|.++.+..... .-..+.......++++++.+.|+.-. .++| ...+|-.+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 777766778888877665432 12222223344789999999998877 5577 788898888888999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 575 EDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..|.+.|.... ..| +...|+++-.+|.+.|+-.+|...++++++.+-++..++....-+..+.|.+++|++.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999998875 455 5688999999999999999999999999999988888887777778999999999999999987
Q ss_pred CCCc
Q 043580 653 CGMK 656 (665)
Q Consensus 653 ~~~~ 656 (665)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=87.73 Aligned_cols=217 Identities=11% Similarity=0.079 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH-HHHHHHHHccCcHH
Q 043580 358 ALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM-VSVFCAIASSGTLK 436 (665)
Q Consensus 358 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~ 436 (665)
.+.+++...|+++.++.-...-..+.......+...+...++-+.++.-+++....+..++..++ ......+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 34455555555554444443333334444444443333323444454444443333322222222 22234455667777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH----HHhcCChHHHHHHHHH
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG----LAMHGDANLTLKIYSD 512 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~ 512 (665)
+|.+++... .+.......+.+|.+.++++.|.+.++.|.+...| .+...+..+ +...+.+..|..+|++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 776665432 34455566777888888888888888888775333 223333333 3333468888888888
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh-HHHHHHHHhCC
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL-EDAEEVIRSMP 585 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 585 (665)
+.+. ..++..+.+.+..++...|++++|.+++.+.. ...| ++.+...++.+....|+. +.+.+++.++.
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 7654 46777888888888888888888888888876 4466 677777777777777777 55667777775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-07 Score=86.14 Aligned_cols=118 Identities=9% Similarity=-0.049 Sum_probs=48.4
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCCh--HH
Q 043580 430 ASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG-SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDA--NL 505 (665)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~ 505 (665)
...+..++|......+++.+. -+..+++....++...| .+++++..++++... +.+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 334444455555554444321 11122222223333333 344455554444443 22233344333333333331 34
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhH
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMK 549 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 549 (665)
++..++++.+.. +-|...|+....++...|+++++++.++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444432 2344444444444444455555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-07 Score=93.64 Aligned_cols=132 Identities=13% Similarity=0.010 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWG 594 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 594 (665)
+..+...+..|.......|.+++|..+++.+. .+.| +......++.++.+.+++++|+..+++.. ..| +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34456666666666666777777777777766 3466 45556666666677777777777766665 334 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+..++.+.|++++|..+|+++...+|+++..+..++.++...|+.++|...|+++.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666777777777777777766666666677777777777777777777776655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-07 Score=78.09 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+.+... ..| |...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHHHHHH
Confidence 444455555666666655555544321 33444455566666666666666666666663 344 6666666666666
Q ss_pred hcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+.|++++|..-+.+.. .. -++...+.+...+.-.|+++.|..++..+....+.++.....|+.+....|++++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6677666666665553 22 345556666666666677777777766666666666666666666666667766666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-08 Score=80.08 Aligned_cols=122 Identities=7% Similarity=-0.064 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 508 KIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.++++.++. .|+. +......+...|++++|...|+... .+.| +...+..++.++...|++++|...++++.
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555553 4543 4556778888999999999999988 5578 78899999999999999999999999986
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.+.++..+..++.++...|+.++|+..+++++++.|+++..+..++.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 334788899999999999999999999999999999999988888776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-05 Score=89.73 Aligned_cols=324 Identities=11% Similarity=-0.019 Sum_probs=188.7
Q ss_pred HHHhcCChHHHHHHHHhcc----CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC----CC---c-----chHHHHHHHH
Q 043580 331 FYAACGRINLARLQFELGI----KDHIASWNALIAGFIRNGMIEDARQLFNNMQK----RD---V-----YSWSAMISGY 394 (665)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~ 394 (665)
.....|+.+.+..+++... ..++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3444566665555554321 11122223334445566777777776664421 11 1 1112233445
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNE----ITMVSVFCAIASSGTLKEGRWAHEYVLNNSI---TL--NDNLSAAIIDMYA 465 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 465 (665)
...|+++.|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678888888888877653111111 2233444556678888888888877754211 11 1133445566778
Q ss_pred hcCCHHHHHHHHHHchhC-----CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hHHHHHHHHHh
Q 043580 466 KCGSINTAFEVFYHIRDR-----TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRN--IKLN--SITFIGVLSTC 532 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~ 532 (665)
..|+++.|...+++.... .++ ...+..+...+...|++++|...+.+..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 888888888887765543 111 1123344556667789999988888765531 1121 23444455667
Q ss_pred cccChHHHHHHHHHHhHhhcCCCCChhHH-----HHHhhHhhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEPDLKHY-----GCMVDLLGRAGQLEDAEEVIRSMPMK--ADV----VIWGTLLAASR 601 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~ 601 (665)
...|+++.|...++.......-......+ ...+..+...|+.+.|...+...... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77889999988888875421111111111 11223445578888888888776521 111 11345666778
Q ss_pred hcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 602 IHGNVEVGERAAKSLAGLQP------SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|+.++|...++++.+... .....+..++.++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999988876422 222346678888999999999999999888754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=77.99 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=110.2
Q ss_pred cCcHHHHHHHHHHHHH---cC-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHH
Q 043580 432 SGTLKEGRWAHEYVLN---NS-ITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 432 ~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 505 (665)
..+.++..+++..+.. .| ..++. .+|..++-+...+|+.+.|...++.+...-|. ..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4456666666666652 33 33444 34445555556666777777777766665322 2222222223445566667
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
|+++++.+.+.+ +.|..++..-+...-..|+..+|++-+....+. +.-|...|.-+.+.|...|++++|.-.++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777776666654 445555655555555556666666666665542 33366666667777777777777766666664
Q ss_pred -CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCchHHH
Q 043580 586 -MKA-DVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 586 -~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
..| ++..+..+...+.-.| +.+-|..+|.+++++.|.+...++-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 334 4444555555544333 4566666666666666654444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-06 Score=80.03 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=142.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
++..+-..+...++.++|+.+..++++ +.|+..| +...-.++...+ +++++...++.+.+.+.+ +..+++....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 455555666778889999999999988 4566554 333334455556 578899999888876533 33345544444
Q ss_pred HHhcCCH--HHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc---Ch
Q 043580 464 YAKCGSI--NTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA---GL 537 (665)
Q Consensus 464 ~~~~~~~--~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 537 (665)
+.+.|+. +++..+++++... +.+..+|+....++...|+++++++.++++++.+ .-|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 5555653 6778888787776 5567788888888889999999999999999876 44555666555444433 21
Q ss_pred H----HHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 538 V----DLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 538 ~----~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
. ++...+..+++ ...| |...|+.+..++...+.. .+...+|...
T Consensus 195 ~~~~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~----------------------------l~~~~~~~~~ 243 (320)
T PLN02789 195 LEAMRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEA----------------------------LVSDPEVSSV 243 (320)
T ss_pred ccccHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcc----------------------------cccchhHHHH
Confidence 1 23444444444 2345 555555555544331110 1223345555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAG------------------RWEDAFSIRKEM 650 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~ 650 (665)
..++...+|+++.+...|+.+|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 55555556666666666666665422 236677777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-06 Score=73.79 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=119.4
Q ss_pred CCCchHHHHHHHHHHH---CC-CCCChhH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 043580 397 NEQPNMALELFHGMVD---AG-VKPNEIT-MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN 471 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (665)
..+.++..+++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+...- +-+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3456777777777653 33 4455543 4455566667777777777777776543 333333333333455667777
Q ss_pred HHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh
Q 043580 472 TAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS 550 (665)
Q Consensus 472 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 550 (665)
+|+++++.+.+. +.|..++-.=+......|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 777777777776 444556666666666677777777777776665 46677777777777777777777777777777
Q ss_pred hcCCCC-ChhHHHHHhhHhhhcC---ChHHHHHHHHhCC
Q 043580 551 VYNVEP-DLKHYGCMVDLLGRAG---QLEDAEEVIRSMP 585 (665)
Q Consensus 551 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 585 (665)
-+.| ++..+..+.+.+.-.| +.+-|.+++.+..
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5567 6666677777665544 4556666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=85.08 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=106.2
Q ss_pred HHHHHH-HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 507 LKIYSD-LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 507 ~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
.++|-+ ....+..+|+.....|.-.|.-.|++++|+..|+.+. .++| |..+||.|.-.++...+.++|++.|.++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 333333 3444545778888888888888999999999999988 5588 7888999999999999999999999887
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----C-----CchHHHHHHHHHhcCChhHHHHH
Q 043580 585 P-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS-----H-----GPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 585 ~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
. .+|. ...+..|+-+|...|.+++|...|-.++.+.+. . ..++..|-.++...++.|-+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6 5564 567788888999999999999999988877654 1 13577777777777877755544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-07 Score=77.23 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
...| +......++..+...|++++|.+.++.+. .+.+...|..+..++...|++++|...++++++.+|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3455 44555566666677777777777776654 22355666667777777777777777777777777777777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|.+.++++.+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=75.43 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=90.0
Q ss_pred CCC-C-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 553 NVE-P-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 553 ~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
++. + +....-.+...+...|++++|..+|+-+. ..| +...|..|..++...|++++|+..|.++..++|+++..+.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 4 45556667778889999999999999875 334 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 629 LLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+++.+|...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998854
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=76.70 Aligned_cols=133 Identities=18% Similarity=0.102 Sum_probs=115.3
Q ss_pred CC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 043580 519 KL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWG 594 (665)
Q Consensus 519 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 594 (665)
.| |... ..+...+...|+-+....+..... ...| +......+++...+.|++.+|+..+++.. .++|...|+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~---~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSA---IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhh---ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 44 4444 666677788888888888888765 2345 77777789999999999999999999986 557999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+..+|.+.|+++.|...|.+++++.|+++.....|+..|.-.|+++.|..++.++...+.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999877654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=86.49 Aligned_cols=189 Identities=13% Similarity=0.148 Sum_probs=162.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 449 SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
+++|-...-..+.+.+...|-...|..+|+++.. |.-.+.+|...|+..+|..+..+..+ -+|+...|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlem-------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEM-------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 4455556667788999999999999999988776 88899999999999999999998888 38999999999
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 606 (665)
........-+++|.++.+....+ .-..+.....+.+++.++.+.++... ..| ...+|..+..+..+.++.
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 99888888889999988876432 33334444556899999999998764 444 788999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.|...|...+.++|++...|..|.-+|.+.|+..+|...+++++..+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999998876
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-06 Score=74.30 Aligned_cols=153 Identities=13% Similarity=0.110 Sum_probs=118.7
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHH
Q 043580 461 IDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 540 (665)
+..|...|+++.+....+.+.. +. ..+...++.+++...+++..+.. +.|...|..+...|...|+++.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567778887776544433322 11 01123567788888888888765 6688899999999999999999
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHh-hhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLL-GRAGQ--LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAK 614 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (665)
|...|++.. .+.| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998 4578 788888888864 67777 599999999986 344 67888889999999999999999999
Q ss_pred HHhccCCCCCchH
Q 043580 615 SLAGLQPSHGPSR 627 (665)
Q Consensus 615 ~~~~~~p~~~~~~ 627 (665)
+++++.|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999998877643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-06 Score=83.50 Aligned_cols=196 Identities=10% Similarity=0.003 Sum_probs=105.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSI-TLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGL 497 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 497 (665)
.+..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++.....|+ ...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444555555666665555555443221 2222 11222233456667777777777776665333 223332 1122
Q ss_pred H----hcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 498 A----MHGDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 498 ~----~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
. ..+....+.+.+.. ..+..|+ ......+...+...|++++|.+.+++..+ ..| +...+..+..+|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHc
Confidence 2 23344444444433 1111232 23344455566677777777777777764 355 456666777777777
Q ss_pred CChHHHHHHHHhCCC-C---CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 572 GQLEDAEEVIRSMPM-K---ADV--VIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 572 g~~~~A~~~~~~~~~-~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
|++++|...+++... . |+. ..|..+...+...|++++|...++++....|.
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 777777777776541 1 221 23445666677777777777777777655553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-06 Score=77.44 Aligned_cols=185 Identities=12% Similarity=-0.002 Sum_probs=130.1
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc----hH
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LN-DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS----PW 490 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 490 (665)
.....+......+...|+++.|...++.+...... |. ...+..+..++...|++++|...++++.+..|+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777788889999999999999999875432 11 24567788999999999999999999988745432 35
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCh-HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH
Q 043580 491 NAIICGLAMH--------GDANLTLKIYSDLEKRNIKLNS-ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY 561 (665)
Q Consensus 491 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 561 (665)
..+..++... |+.+.|.+.++++... .|+. ..+..+..... .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHH
Confidence 5555666554 7889999999999886 4543 22222211100 00 0000 112
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP-M---KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..+...|.+.|++++|...++++. . .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 256677889999999999998875 2 22 3567888999999999999999998888766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-05 Score=67.98 Aligned_cols=190 Identities=15% Similarity=0.050 Sum_probs=128.4
Q ss_pred HHHHccCcHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHH
Q 043580 427 CAIASSGTLKEGRW-AHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 427 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
......++.+.... +.+.+.......+......-...|...|++++|.+..... .+......=...+.+..+.+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHH
Confidence 33333444443332 3333333333333333344455677888888888877763 223333333455667778888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
|.+.+++|.+ -.+..|.+.|..++.+ .+.+..|.-+|+++-+ +..|++.+.+..+.++...|++++|..++
T Consensus 156 A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 156 AEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 8888888887 3466677777777765 3568888889999875 46778888888888888999999999999
Q ss_pred HhCCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccCCCCCc
Q 043580 582 RSMPMK--ADVVIWGTLLAASRIHGN-VEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 582 ~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 625 (665)
+++..+ .++.++..++.+-...|. .+.-.+.+.++....|.++-
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 888633 577888777777666664 56677788888888888765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-05 Score=75.73 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=72.3
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~ 608 (665)
+...|++++|+..++.+... .| |+.......+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666666632 55 55555566666666666667666666664 3343 4555566666666666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 609 GERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|+..++.....+|+++..|..|+.+|..+|+..+|...+.+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666666666666666666666555555554444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0001 Score=82.96 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=163.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----CCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCC---CCC--hhHHHHHHH
Q 043580 361 AGFIRNGMIEDARQLFNNMQK----RDV----YSWSAMISGYAQNEQPNMALELFHGMVDAGV---KPN--EITMVSVFC 427 (665)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~ 427 (665)
..+...|++++|...++.... .+. ...+.+...+...|+++.|...+++.....- .+. ...+..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345567777777777765432 111 2345556667778888888888877664211 111 223445556
Q ss_pred HHHccCcHHHHHHHHHHHHH----cCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC--cchHHHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLN----NSITL---NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR----TTS--VSPWNAII 494 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~l~ 494 (665)
.+...|+++.|...++...+ .+... ....+..+...+...|++++|...+...... .+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67778899988888877654 22111 1223445566677789999998888776553 111 22344456
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChHHH-----HHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHh
Q 043580 495 CGLAMHGDANLTLKIYSDLEKRNIKL-NSITF-----IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMV 565 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 565 (665)
..+...|+++.|...+++.....-.. ....+ ...+..+...|+.+.|..++...... ..... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHH
Confidence 67778899999999888875431111 11111 11123344578889999988776532 11111 11234677
Q ss_pred hHhhhcCChHHHHHHHHhCCC-----C-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 566 DLLGRAGQLEDAEEVIRSMPM-----K-A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~-----~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.++...|++++|...++++.. . + ...+...+..++...|+.++|...+.+++++......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 788889999999999888751 1 1 1235556677788999999999999999887654433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0015 Score=67.30 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 490 WNAIICGLAMHGDAN---LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
.+.|+..+.+.++.. +|+-+++...... +-|..+-..++..|+-.|-...|.++|+.+.-+ .+.-|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence 455667777777655 3444444444432 335556666777777778778888877777655 5555544442 233
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCh
Q 043580 567 LLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRW 640 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 640 (665)
.+...|++..+...+.... ...+..--..++...++.|.+.+..++..---.++-+. ...-......++..++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4455667777777666543 11111111223444456677766666554333322211 11123444556666666
Q ss_pred hHHHHHHHHHH
Q 043580 641 EDAFSIRKEMR 651 (665)
Q Consensus 641 ~~A~~~~~~~~ 651 (665)
+.-...+..+.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 66666665554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-06 Score=88.03 Aligned_cols=233 Identities=10% Similarity=0.096 Sum_probs=154.6
Q ss_pred CCC-hhHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchH
Q 043580 416 KPN-EITMVSVFCAIASSGTLKEGRWAHEYVLN-NSITLND---NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPW 490 (665)
Q Consensus 416 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 490 (665)
.|| ...|...+.-....++.+.|+++.++++. .++.-.. .+|.++++.-..-|.-+...++|+++.+.......|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 344 34566667777777888888888888764 2332222 345566666666677777788888887764445567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhH
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDL 567 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~ 567 (665)
..|...|.+.+..++|.++++.|.++ +......|...+..+.+.++-+.|..++.+..+. -|. .......+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 77888888888888888888888775 3455667888888888888888888888887743 443 4445555666
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCCchHH-HHHHHHHhcCChhH
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ--PSHGPSRV-LLSNIYADAGRWED 642 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-~l~~~~~~~g~~~~ 642 (665)
-.+.|+.+.+..+|+... .+...+.|+.++..-.++|+.+.+..+|++++.+. |.....++ .+...-...|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 667888888888887775 22356778888888888888888888888886554 44443333 22222223366555
Q ss_pred HHHHHHHHHh
Q 043580 643 AFSIRKEMRD 652 (665)
Q Consensus 643 A~~~~~~~~~ 652 (665)
+..+=.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=55.34 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=26.9
Q ss_pred CCCCCcchHHHHHHHHHhcCCchHHHHHHhhcC
Q 043580 53 GLESNTFIQNSLINLYAKCGLISQAKSMFDSCS 85 (665)
Q Consensus 53 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (665)
|++||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888773
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=84.60 Aligned_cols=161 Identities=10% Similarity=0.053 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
.+..+..+|-+.|+.++|..+|+++... +.++.+.|.+.-.|+.. +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 4444555555555555555555555554 33344555555555555 555555555554442 333
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
.+++..+.++|.++.. ..| +...+-.+.+.....- ...--..++..+-..|....++++++.++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHR------------EFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhh------------ccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555552 233 2322222222211110 11223345555667778888999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 614 KSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 614 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.+++.+|++..+..-|+.+|. ++|.+ -..+++.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 9999999999999988988877 44444 3344443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0016 Score=63.07 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=123.6
Q ss_pred chHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 400 PNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFY 478 (665)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 478 (665)
.+.....++++...-..--..+|...++...+..-+..|..+|.++.+.+..+ +..+.+++++.|| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666654322233456677777788888889999999998877766 6677788887666 677888999998
Q ss_pred HchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--
Q 043580 479 HIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-- 553 (665)
Q Consensus 479 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 553 (665)
.-...-+| +.--...+.-+...++-..+..+|++....++.|+. ..|..++.--..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 77666344 444556777788889999999999999988766654 5899999888889999999988888776544
Q ss_pred CCCChhHHHHHhhHhhhcCCh
Q 043580 554 VEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~ 574 (665)
..|....-..+++.|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 333223333445555444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-06 Score=74.26 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 606 (665)
.-+.+.+++.+|+..|.+.+ .+.| |+..|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34567889999999999998 6688 88888888999999999999999988876 445 567899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
++|++.|+++++++|++..+...|..+-.+.+..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988888877766666555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=70.16 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 509 IYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 509 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
.+++.... .| +......+...+...|++++|.+.++.+... .| +...+..+..++...|++++|...+++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555553 44 4455666777888899999999999998753 56 78888889999999999999999998874
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.+.+...+..+..++...|++++|...+++++++.|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 334678888888899999999999999999999999887743
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=53.99 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 553 NVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.9e-05 Score=66.37 Aligned_cols=143 Identities=12% Similarity=0.040 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh--
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR-- 570 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 570 (665)
-...|...|++++|++.++... . ......=...+.+..+.+.|.+.+++|.+- -+..|.+.|+.+|.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHh
Confidence 3456889999999999887622 1 222333344566788999999999999842 355667767766654
Q ss_pred --cCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 571 --AGQLEDAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 571 --~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
.++..+|.-+|+++.. .|++.+.+....++...|++++|..+++.++..+++++.+...++-+-...|+..++.+
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 4689999999999974 58999999999999999999999999999999999999999999888888898876654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=84.38 Aligned_cols=207 Identities=9% Similarity=-0.028 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHH
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLA 498 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 498 (665)
...+..|+..+...++++++.++.+...+.. +-....|-.+...+...++.+++..+ . ++....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~-------------~l~~~~ 94 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N-------------LIDSFS 94 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-------------hhhhcc
Confidence 3456667777777788888887777555543 22223444444466666665555444 2 222333
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
...++..+..+...|.+. .-+...+..+..+|.+.|+.++|..+|+++.+ +.| |+.+.|.++..|... ++++|
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-hHHHH
Confidence 334444444444455552 34456888899999999999999999999995 468 899999999999999 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH--------H------------HHHHhc
Q 043580 578 EEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL--------S------------NIYADA 637 (665)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--------~------------~~~~~~ 637 (665)
.+++.++. ..+...+++..+..+.+++.+.+|++...+.++ + ..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 99998874 336666788888888888888888877653222 2 456677
Q ss_pred CChhHHHHHHHHHHhCCCccCC
Q 043580 638 GRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
++|+++.++++.+++...++.+
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchh
Confidence 8999999999999987665443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-06 Score=68.68 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=77.2
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CCH----HHHHHHHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-ADV----VIWGTLLA 598 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~ 598 (665)
|..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+... |++ .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666777777777775422221 1233334566677777777777777776522 332 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.+...|++++|+..++.. .-.+-.+..+..+|.+|...|++++|++.|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888887653 233444556778888888888888888888765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-05 Score=79.49 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=151.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhccCC--------chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-cchHH
Q 043580 319 DCYDFIQATIIHFYAACGRINLARLQFELGIKD--------HIASWNALIAGFIRNGMIEDARQLFNNMQKR-D-VYSWS 388 (665)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 388 (665)
|.+...|-..+......++.+.|+++.++.+.. -...|.++++....-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 444555666777777777777777777754421 2346777777777777777888888877654 3 34677
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LNDNLSAAIIDMYAKC 467 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 467 (665)
.|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.+.-+.|..++.++++.-.+ -........+.+-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888875 3345566777778888888888888888887765332 1234445556667788
Q ss_pred CCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHH
Q 043580 468 GSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~ 539 (665)
|+.+.+..+|+..... +.....|+..+..-.++|+.+.+..+|++.+..++.|-. ..|...+..--..|+-.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 8888888888877766 445678888888888888888888888888887776633 23444444333344433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-05 Score=79.84 Aligned_cols=133 Identities=11% Similarity=-0.005 Sum_probs=76.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 486 SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
++..+..|.......|++++|..+|+...+. .| +......++..+.+.+++++|....++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 3455555556666666666666666666653 34 333455555566666666666666666653 355 4555555
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
+..++...|++++|..+|+++. ..| +...+..+..++...|+.++|...|+++++.....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 6666666666666666666655 223 25556666666666666666666666665554433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.1e-05 Score=72.36 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 568 (665)
+......+...|+++.|+..++.++..- +.|..........+...++.++|.+.++++.. ..|+ ....-.+..+|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHH
Confidence 3333444556677777777777777652 33455555566677777777888887777773 4664 55566677777
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
.+.|++.+|+.++++.. .+.++..|..|..+|...|+..++.... +..|.-.|+++.|+..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHH
Confidence 77788888877777765 3346777777777777777766665543 3446666777777777
Q ss_pred HHHHHhCC
Q 043580 647 RKEMRDCG 654 (665)
Q Consensus 647 ~~~~~~~~ 654 (665)
+..+.++.
T Consensus 448 l~~A~~~~ 455 (484)
T COG4783 448 LMRASQQV 455 (484)
T ss_pred HHHHHHhc
Confidence 76666653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=74.49 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=96.1
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCCchH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
-+| |...|..|...|...|+...|..-|.+.. ..+++..+..+..++..+. +..++..++++++.++|.+....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 378 89999999999999999999999999986 4467888888888865433 47899999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCccc
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSG 663 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 663 (665)
..|+..+...|++.+|...|+.|++.....+|.-+-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 999999999999999999999999987766665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.5e-06 Score=79.32 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=99.4
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASR 601 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 601 (665)
....++..+...++++.|+.+|+++.+. .|+ ....+++.+...++..+|++++++.. ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666678899999999998865 465 34457888888888899999988876 334 6666666677788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 602 IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+.++++.|+.+.++++++.|++-..|..|+.+|...|++++|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=62.20 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG-RWEDAFSIRKEMRDC 653 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 653 (665)
++.+|..++..+...|++++|+..++++++++|+++..+..+|.+|...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999 799999999998764
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0038 Score=59.32 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=73.8
Q ss_pred HHhcCC-HHHHHHHHHHchhC-CCCcchHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCCh----HHHHHHHH
Q 043580 464 YAKCGS-INTAFEVFYHIRDR-TTSVSPWNAII----CGLAM---HGDANLTLKIYSDLEKRNIKLNS----ITFIGVLS 530 (665)
Q Consensus 464 ~~~~~~-~~~A~~~~~~~~~~-~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~ 530 (665)
+.+.|. -++|.++++.+..- +.|..+-|... .+|.+ .....+-+.+-+-+.+.|++|-. ..-|.+..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444554 66777777777765 23333322222 12221 22344444455555667776632 23344433
Q ss_pred H--hcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 043580 531 T--CCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWG 594 (665)
Q Consensus 531 ~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 594 (665)
+ +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.+++ |+..+++
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 3 345677777776665555 567888888888888888888888888888775 4444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-07 Score=67.39 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 571 AGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|+.++++ .+.+|.++.....+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777777777775 223 345566677888888888888888888 777777777777888889999999999888
Q ss_pred HHHH
Q 043580 647 RKEM 650 (665)
Q Consensus 647 ~~~~ 650 (665)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=74.48 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
....|+..+...++++.|..+|+++.+.. +.....++..+...++-.+|.+++++.+... +.+...+..-...|.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34567777778889999999999999854 4456668888888889999999999999753 45677777777888899
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK 587 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (665)
++++.|.++.+++. .+.| +..+|..|+.+|...|+++.|+-.+..++..
T Consensus 248 ~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999998 5689 7889999999999999999999999998733
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=64.66 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=61.5
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH---GPSRVLLS 631 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 631 (665)
++..++..+.+.|++++|.+.++++. ..|+ ...+..+..++.+.|+++.|...++++....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666677777777666664 1222 2345556666777777777777777777766665 34466677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++.+.|++++|.+.++++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=59.37 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...+...|++++|+..++++++..|+++..+..+|.++...|++++|.+.|+++++...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788999999999999999999999999999999999999999999999999987543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=62.01 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=78.7
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+..++..+...|++++|...++++. ..| +...+..+..++...|++++|...++++....|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35567777888899999999888865 233 4467777888888899999999999999999999988889999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043580 638 GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~ 654 (665)
|++++|.+.++++.+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-06 Score=80.21 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 603 (665)
.-...+...|+++.|+..|+++.+ ..| +...|..+..+|...|++++|+..++++. ..| +...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 344566778999999999999984 477 78888899999999999999999999986 334 677888889999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
|+++.|+..++++++++|+++.....+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998877776664444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=9e-05 Score=61.85 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=78.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhhhcCC
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLN---SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 573 (665)
..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ....-.|..++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 3677777777777777753 222 123344556677788888888888888765 32222 2234456777888888
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 574 LEDAEEVIRSMPMK-ADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 574 ~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
+++|+..++..... ..+..+...+..+.+.|+.++|...|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888776533 345556667777888888888888888763
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-06 Score=49.84 Aligned_cols=35 Identities=34% Similarity=0.614 Sum_probs=31.6
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
.+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.7e-06 Score=73.21 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=83.4
Q ss_pred hhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
.+-+.+.+++.+|+..|.+++ ..| ++..|..-..+|.+.|.++.|++-.+.++.++|.....|..||.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345668899999999999986 445 677788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccC
Q 043580 643 AFSIRKEMRDCGMKRL 658 (665)
Q Consensus 643 A~~~~~~~~~~~~~~~ 658 (665)
|.+.|+++++....+.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 9999999988765443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.7e-05 Score=62.76 Aligned_cols=100 Identities=9% Similarity=-0.064 Sum_probs=82.4
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
|+.+ .....-....-+...|++++|..+|+-+. ..-++..|..|..++...+++++|+..|-.+.-+++++|...++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 5555 23333344555668899999999998875 33467788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.|.+|...|+.+.|++.|+.+++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999988877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-06 Score=48.71 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=28.9
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCC
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIP 153 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 153 (665)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888999999999999999999888887
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-05 Score=66.55 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
....+..++..+...|++++|...++++. ..|+ ...+..++.++.+.|++++|...++++++..|+++..+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34556677777778888888888887765 1221 356778888888999999999999999999998888888888
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHHhCC
Q 043580 632 NIYADAGR--------------WEDAFSIRKEMRDCG 654 (665)
Q Consensus 632 ~~~~~~g~--------------~~~A~~~~~~~~~~~ 654 (665)
.+|...|+ +++|.++++++...+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888776 566777776666544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-06 Score=48.97 Aligned_cols=34 Identities=41% Similarity=0.803 Sum_probs=31.4
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPN 286 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 286 (665)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.6e-05 Score=75.74 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+.......|++++|...++++++++|+ ...|..+|+++...|+.++|.+.++++...+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444433344445555555555555555552 3445555555555555555555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-05 Score=74.27 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
....+...|+++.|++.|+++++.. +.+...|..+..+|...|++++|+..++++.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455667788888888888888764 44666777778888888888888888888874 467 677788888888888
Q ss_pred CChHHHHHHHHhCC-CCCCHHHH
Q 043580 572 GQLEDAEEVIRSMP-MKADVVIW 593 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~~~~~~ 593 (665)
|++++|...++++. ..|+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888875 44543333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.9e-06 Score=48.25 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=29.2
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP 285 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 285 (665)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.2e-05 Score=59.92 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=75.8
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLL 597 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 597 (665)
++..+...+...|++++|.+.|+.+.+...-.| ....+..++.++.+.|++++|...++++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566677778888888888888875411111 23456668888888888888888888775 2232 45677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888889999999999999999888876643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.033 Score=57.94 Aligned_cols=117 Identities=9% Similarity=0.093 Sum_probs=64.9
Q ss_pred HHHHHHhcccChHH---HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHH-H
Q 043580 526 IGVLSTCCHAGLVD---LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-ADVVIWGTLLA-A 599 (665)
Q Consensus 526 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~-~ 599 (665)
+.++..|.+.++.. +|+-+++.... ..| |..+--.++.+|.-.|-+..|.++++.+..+ ...+|...++- .
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 44555666665544 34445555442 345 5555556777777777777777777777644 33444444433 3
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
+...|++..+...++....+..++..-..-++..-.+.|.+.+-.+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 4566777777777777766554443333333333344455444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=67.04 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=95.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHH------------
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGC------------ 563 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~------------ 563 (665)
++...|++++|..+-....+.. ..+......-..++...++.+.|...|++.. .+.|+...-..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHH
Confidence 3455667777666665555532 2222222222223334566677777777666 34554222111
Q ss_pred -HhhHhhhcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 564 -MVDLLGRAGQLEDAEEVIRSMP------MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 564 -l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
=.+-..+.|++.+|.+.+.+.. .+|+...|.....+..+.|+..+|+.--+.++.++|.....+..-+.++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1223446677777777777765 224445555556666677788888888888888887777777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCc
Q 043580 637 AGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~~~~~ 656 (665)
.++|++|.+.++++.+....
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 88888888877777765444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=70.99 Aligned_cols=121 Identities=9% Similarity=0.027 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHcCCCCCh-HHHHHHHHHhcc--------cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 503 ANLTLKIYSDLEKRNIKLNS-ITFIGVLSTCCH--------AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...|..+|++.++. .|+. ..|..+..++.. .++...+.+..++.... ...| ++..|..+...+...|
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-ccCcCChHHHHHHHHHHHhcC
Confidence 45566666666664 4432 333333222211 12234445555544432 2233 6678888877777889
Q ss_pred ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 573 QLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
++++|...++++. ..|+...|..++..+...|+.++|...+++++.++|.+++.
T Consensus 435 ~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999999999986 66888899999999999999999999999999999999974
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=56.83 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888887776543
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=63.48 Aligned_cols=94 Identities=11% Similarity=-0.080 Sum_probs=76.0
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
....+..++..+...|++++|...+++.. ..| ...+|..+..++...|++++|+..+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35667778888888899999999998874 222 2357888999999999999999999999999999998888888
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 043580 632 NIYA-------DAGRWEDAFSIRKEM 650 (665)
Q Consensus 632 ~~~~-------~~g~~~~A~~~~~~~ 650 (665)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888665555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.3e-05 Score=54.99 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|.+.++++.|...+++++.++|+++..+...|.+|...|++++|.+.++++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678889999999999999999999999999999999999999999999999987654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0023 Score=60.36 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=53.4
Q ss_pred Hhccc-ChHHHHHHHHHHhHhhcCCC--C--ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC----CH-HHHHHH
Q 043580 531 TCCHA-GLVDLGERYFKSMKSVYNVE--P--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA----DV-VIWGTL 596 (665)
Q Consensus 531 ~~~~~-~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~-~~~~~l 596 (665)
.|... |+++.|++.|++..+.+.-. + -..++..++..+.+.|++++|.++|++.. ..+ +. ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 45555 66666666666665432111 1 13345556677777777777777777653 111 11 122334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
+-++...||...|...+++..+.+|.-..+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 445666778888888888887777765444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=55.45 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=59.0
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHh
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRI 602 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~ 602 (665)
..+...+...|++++|...++.+.+ ..| +...+..++.++...|++++|.+.+++.. .. .+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3444555556666777777666653 244 34556666666667777777777776654 22 234566666677777
Q ss_pred cCCHHHHHHHHHHHhccCC
Q 043580 603 HGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p 621 (665)
.|+++.|...++++.+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777777665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0005 Score=56.07 Aligned_cols=97 Identities=8% Similarity=-0.081 Sum_probs=77.0
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
..-.+...+...|++++|.++|+.+. .+.| +..-|..|.-++-..|++++|+..+..+. .+.++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44455556677899999999998887 4578 77788888888888999999999988875 334677888888889
Q ss_pred HhcCCHHHHHHHHHHHhccCCCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
...|+.+.|...|+.++...-..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999888766433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.044 Score=52.43 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=74.7
Q ss_pred hcccCh-HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH----hhh---cCChHHH---HHHHHhCCCCC----CHHHHHH
Q 043580 532 CCHAGL-VDLGERYFKSMKSVYNVEP-DLKHYGCMVDL----LGR---AGQLEDA---EEVIRSMPMKA----DVVIWGT 595 (665)
Q Consensus 532 ~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~----~~~---~g~~~~A---~~~~~~~~~~~----~~~~~~~ 595 (665)
+.+.|. -++|+++++.+. .+.| |..+-|.+... |.. ...+.+- ...+++....| +...-|.
T Consensus 389 lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 334444 678888888887 4566 55444432221 111 1111111 12233333332 4456677
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 596 LLAA--SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 596 l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
|..| +...|++.++.-.-..+.+..| ++.++..+|.++....+|+||.+++.++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7766 5688999999999999999999 7888999999999999999999998765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=66.57 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHh---HhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CC-CCH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSM---KSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MK-ADV 590 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~~~ 590 (665)
..|..|...|.-.|+++.|+...+.= .+.||-.. ....+..+.+++.-.|+++.|.+.++... .+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777789999988765542 23334444 45678889999999999999999987753 11 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cC--CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG----LQ--PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
-+-.+|...|.-..++++|+.+..+=+. ++ .....++..|+.+|...|..++|+.+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4556777888888889999988876542 22 344566888999999999999999888776653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.6e-05 Score=53.25 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=48.4
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
++..+...|++++|+..++++. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888999998888876 335 567788888888899999999999999999998864
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.6e-05 Score=55.36 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD-VVIWGTLLAASRIHGNVEVGERAAK 614 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 614 (665)
|+++.|+.+++++.+...-.|+...+..++.+|.+.|++++|..++++....|. ......++.++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 445555555555543301011222333345555555555555555544221121 1222333444555555555555554
Q ss_pred H
Q 043580 615 S 615 (665)
Q Consensus 615 ~ 615 (665)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.1e-05 Score=43.54 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=25.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCC
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGV 151 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 151 (665)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00093 Score=57.71 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN--SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
.+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 466666677777888888888887776432222 34666777777777888888887777774 356 555666666
Q ss_pred hHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 566 DLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
.+|...|+...+..-++... ..+++|...++++++.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 67766666555543333221 22678888999999988887 333444444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00027 Score=64.78 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=38.6
Q ss_pred hcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChh
Q 043580 570 RAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWE 641 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 641 (665)
+.|++++|...|+.+. ..|+ +..+..++.+|...|+++.|...|+++++..|+++ .++..++.++...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3344444444444443 1121 23344444555555555555555555554444432 22334445555555555
Q ss_pred HHHHHHHHHHh
Q 043580 642 DAFSIRKEMRD 652 (665)
Q Consensus 642 ~A~~~~~~~~~ 652 (665)
+|+++|+++++
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00083 Score=62.98 Aligned_cols=134 Identities=11% Similarity=0.159 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (665)
+|..++....+.+..+.|..+|++.++.+ ..+...|...+.. +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56677777777777888888888887543 3345555555555 33356677788898888865 22366777788888
Q ss_pred hhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 568 LGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+.+.|+.+.|..+|++.... | ....|...+.--.+.|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88888899999998887633 3 3358888888888899999999999988888887554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0038 Score=56.97 Aligned_cols=174 Identities=11% Similarity=0.027 Sum_probs=107.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcch----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVSP----WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH- 534 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 534 (665)
....+...|++++|.+.|+.+....|+... .-.++.++.+.++++.|...+++..+....-....+.....+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 444556678888888888888776444321 234556777888888888888888875322222233333333221
Q ss_pred -c---------------Ch---HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 043580 535 -A---------------GL---VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT 595 (665)
Q Consensus 535 -~---------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 595 (665)
. .| ...|++.|+.+.+. -|+ +.-..+|...+..+..+-.... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 22344455555433 343 2333444443333321111111 13
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+..-|.+.|.+.-|+.-++.+++..|+.+.. ...++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556889999999999999999988887654 678889999999999999988665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.8e-05 Score=43.31 Aligned_cols=31 Identities=32% Similarity=0.675 Sum_probs=24.8
Q ss_pred eeHHHHHHHHhhcCChhHHHHHHHHHHHCCC
Q 043580 253 VSWGTMIDGYLQVERLSEALTMYRAMLCDGI 283 (665)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 283 (665)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.4e-05 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
+++++++++|+++.++..||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999964
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.1e-05 Score=53.26 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=24.5
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.|++++|+++|+++... .| +...+..++.+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555533 44 44445555555555555555555555554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=53.97 Aligned_cols=90 Identities=18% Similarity=0.071 Sum_probs=62.7
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS---HGPSRVLLSNIY 634 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 634 (665)
.+..++-..|+.++|+.++++.... + ....+..+...+...|++++|..++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455666777777777777776521 1 1345556777777888888888888888877777 556666777788
Q ss_pred HhcCChhHHHHHHHHHHh
Q 043580 635 ADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~ 652 (665)
...|+.++|.+.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888877765543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=9.4e-05 Score=52.45 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=49.6
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG-NVEVGERAAKSLAGLQP 621 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 621 (665)
++..|..++..+...|++++|+..|++.. .+.+...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567777778888888888888887765 3335667778888888888 68888888888888877
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.082 Score=51.88 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 043580 435 LKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC---GSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKI 509 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 509 (665)
.+++..+++..++.-...+..+|..+.+.--.. ...+.....++++... ..-..+|..++..-.+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 344555555555433333444444333221111 1355566677776665 23345788889988999999999999
Q ss_pred HHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-
Q 043580 510 YSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK- 587 (665)
Q Consensus 510 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 587 (665)
|.+..+.+..+ +....++++.-+| .++.+-|.++|+.-.+.+|- ++..-...++-+...++-..|..+|++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 6667777777666 57889999999998876333 3344456677888899999999999998733
Q ss_pred --C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCChhHHHHHH
Q 043580 588 --A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG----PSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 588 --~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
| ...+|..++.--..-||...+..+-++.....|.+. .....+.+-|.-++.+..-..-+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 2 458999999999999999999999999877766221 12345555666666654444333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=67.90 Aligned_cols=63 Identities=6% Similarity=-0.039 Sum_probs=29.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV----VIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
+...++.+..+|...|++++|+..+++.. ..|+. ..|.++..+|...|++++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444455555555555555555554432 33332 12444555555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0083 Score=49.75 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=93.3
Q ss_pred CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHH
Q 043580 518 IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVI 592 (665)
Q Consensus 518 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~ 592 (665)
..|....-..+..++...|++.+|...|++... |+-- |....-.+.++....+++..|...++++- .+| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 356666666777788888888888888888775 5544 67777777888888888888888887764 222 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
-..+...+...|.++.|+..++.++...|+... ....+..+.++|+.++|..-+..+-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444666777888888888888888887776443 55556677888887777766665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=56.85 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=44.3
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASR 601 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 601 (665)
..+...+...|++++|...|++.... ...| ...++..+..+|...|++++|+..++++. ..| ....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33333344444444444444444422 1011 12234444444444555555555444443 111 2233333333333
Q ss_pred -------hcCCHH-------HHHHHHHHHhccCCCCC
Q 043580 602 -------IHGNVE-------VGERAAKSLAGLQPSHG 624 (665)
Q Consensus 602 -------~~g~~~-------~A~~~~~~~~~~~p~~~ 624 (665)
..|+++ +|...++++++.+|.+.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 455544 66667777777787654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=49.75 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHhHHcCC-CCCHhhHHHHHHHHhccC--------ChHHHHHHHHHHHHHhcCCchhHH
Q 043580 123 YTSMIMGFAQNDCWREALEVFRDMRILGV-IPNEVTLASVISSSVHLG--------GIWECRMLHGLVIKLMIDGFVIIS 193 (665)
Q Consensus 123 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 193 (665)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999987654 234567788999999999999999
Q ss_pred HHHHHHHhc
Q 043580 194 TNLLNMYCV 202 (665)
Q Consensus 194 ~~l~~~~~~ 202 (665)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.088 Score=50.06 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=78.7
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH 603 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (665)
+.+..+.-|...|+...|.++-.+. ++ |+...|...+.+|+..++|++-.++... +.+|.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566667778877777665554 33 7888888889999999999888876654 33557788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
|+..+|..+..++ | +..-+..|.+.|++.+|.+.--
T Consensus 251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 9988888888771 1 1344567888888888876643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.025 Score=54.04 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCC-----CcchHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTT-----SVSPWNAIICGLAM---HGDANLTLKIYSDLEKRNIKLNSITFIGVLS 530 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 530 (665)
.++-.|....+++...++.+.+...+. ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344456666777777777777666511 11112223344445 6778888888877555555677777777665
Q ss_pred Hhcc---------cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH----HHHHHH---HhCC-----C--C
Q 043580 531 TCCH---------AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE----DAEEVI---RSMP-----M--K 587 (665)
Q Consensus 531 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-----~--~ 587 (665)
.|-. ....++|+..|.+.- .+.|+...--.++.++.-.|... +..++- ..+. . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 234678888888765 45676544333444444444322 222222 1111 1 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+-..+.+++.++.-.||+++|.+.++++..+.|..-.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 34555678999999999999999999999999876554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.022 Score=53.64 Aligned_cols=217 Identities=11% Similarity=-0.046 Sum_probs=119.3
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcch-------------HHHH
Q 043580 427 CAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSP-------------WNAI 493 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~l 493 (665)
.++...++.++|..+-..+++..-. +....-.-..++.-.++.+.|...|++.....|+-.. +..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3444556666666655555543211 1111111122334456666777777666665443221 1122
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKR---NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.-.+... .+.| -...|..-.+++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 23445678888888888887763 234455567777777778888888888777776 4566 3556666677777
Q ss_pred hcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHhccCCCCCch----
Q 043580 570 RAGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHG---------------NVEVGERAAKSLAGLQPSHGPS---- 626 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~~~~~---- 626 (665)
..++|++|++-+++.. ... ...++.....++.++. +.+.-...-+.++...|+-...
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~e 412 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKE 412 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHH
Confidence 7888888888887754 111 2233333332332211 1122222223334445543322
Q ss_pred ----HHHHHHHHHhcCChhHHHHHH
Q 043580 627 ----RVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 627 ----~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+.-.+.+|...+++.++.+..
T Consensus 413 aE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 413 AEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 445677777777777776554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.12 Score=48.67 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASR-IHGNVEVGERAAKSLA 617 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 617 (665)
.++| +.+....+..+-...|++..|..--+... ..|....|.-+...-. ..||-.++...+-+++
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 3344 34444444555555555555544443332 3344444444444322 2355555555555554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=62.19 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=88.5
Q ss_pred CCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcc
Q 043580 413 AGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN--SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVS 488 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 488 (665)
.+.+.+...+..+++.+....+.+.+..++...+.. ....-+.+..++++.|...|..+.+..+++.=... -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667777888888888888888888888777654 22233344457888888888888888877665554 57777
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
+++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777777666667766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00023 Score=44.71 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999998888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=58.43 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCCC-CC----CHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMPM-KA----DVVIWG 594 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~ 594 (665)
.|...+....+.|++++|+..|+.+.+. .|+ +..+..++.+|...|++++|...|+.+.. -| .+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555554446678999999999999865 553 35777889999999999999999988862 13 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.++.++...|+.++|...++++++..|++...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77888889999999999999999999987753
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0028 Score=47.80 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred eHHHHHHHHhhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccc--------chhhHHHHHHHHHHhCCCCchhH
Q 043580 254 SWGTMIDGYLQVERLSEALTMYRAMLCDGI-APNDVMIVDLISACGRAM--------AFGEGLQIHSIIVKAGFDCYDFI 324 (665)
Q Consensus 254 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 324 (665)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 999999999999887643 23456677778887777777777
Q ss_pred HHHHHHHHHh
Q 043580 325 QATIIHFYAA 334 (665)
Q Consensus 325 ~~~l~~~~~~ 334 (665)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7776665544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00027 Score=51.56 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL----QPSH---GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+++.+..+|...|++++|+..+++++++ .+++ ..++..+|.+|...|++++|+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888888888888888643 2222 34477899999999999999999998865
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0062 Score=57.45 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=64.7
Q ss_pred HHHHHhhHhhhc-CChHHHHHHHHhCC------CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-----
Q 043580 560 HYGCMVDLLGRA-GQLEDAEEVIRSMP------MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP----- 625 (665)
Q Consensus 560 ~~~~l~~~~~~~-g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----- 625 (665)
++..+...|... |++++|++.|+++. ..+ -...+..+...+.+.|++++|...+++.....-+++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444556677777 88999998888875 111 2345677788899999999999999999764433221
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 626 --SRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 626 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+...+-++...|+...|.+.+++..+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2344556678889999999999988654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=52.21 Aligned_cols=167 Identities=12% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhc
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCC 533 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 533 (665)
....+...|++++|...|+.+...-|+. .+...++.++.+.|+++.|...+++.++. .|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 3445566777888888887777663332 24556667777888888888888887765 2322 22222222222
Q ss_pred c-------------cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043580 534 H-------------AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAAS 600 (665)
Q Consensus 534 ~-------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 600 (665)
. .+...+|...|+.+.+ -|-.+....+|...+..+...-. ..-..+..-|
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~la-~~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRLA-EHELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1 1223344444444443 33334444444444443321100 1112345668
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHH
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~ 645 (665)
.+.|.+..|..-++.+++..|+.+.. ...++.+|.+.|..+.|.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999988654 6778888999999885543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=49.65 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=66.8
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHhcCC
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP----SRVLLSNIYADAGR 639 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~ 639 (665)
.++...|+.+.|++.|.+.. .+..+..||.-..++.-.|+.++|..-+++++++.-+... .+..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35567788888888887765 2336677888888888888888888888888877644432 26677778888888
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
.+.|+.-|+.+-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00071 Score=48.53 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=51.1
Q ss_pred hhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
...|.+.+++++|.++++++. ..| ++..|.....++...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888876 334 66777778888889999999999999999999987775443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.023 Score=56.60 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcC
Q 043580 288 VMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNG 367 (665)
Q Consensus 288 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (665)
.+...+..-+.+...+..|.++|..|-.. ..++.+....+++++|..+-++..+--...|-...+-++...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 44444444455666677777777665432 345666666777777776666655544444555555555555
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 043580 368 MIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDA 413 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 413 (665)
++++|.+.| .+.|+..+|..+++++...
T Consensus 819 rFeEAqkAf------------------hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAF------------------HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHH------------------HHhcchHHHHHHHHHhhhh
Confidence 555555444 3567777777777776543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0043 Score=60.56 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=94.2
Q ss_pred HHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 043580 345 FELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN 418 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 418 (665)
|......+......+++.+....+++.+..++-..... .+.+..+++..|...|..+.++.+++.=..-|+-||
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 33444455566667777777777788888888777643 345667899999999999999999999889999999
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
..+++.++..+.+.|++..|.++...|...+...++.++..-+..+.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887766666665555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0035 Score=58.81 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh-cCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR-AGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
.+|..++....+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|..+|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888889999999999999843 12256666666666444 567777999999986 44678889999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+.+.|+.+.|..+|++++..-|... ..|...+..=.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877665 45788888888899999999999998774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0051 Score=49.37 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIY 634 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~ 634 (665)
.-+....+.|++++|.+.|+.+... | ....-..++.++.+.|+++.|...+++.++++|.++.+ ++..|.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3345556789999999999888622 2 34566778899999999999999999999999998865 55666666
Q ss_pred HhcCC---------------hhHHHHHHHHHHh
Q 043580 635 ADAGR---------------WEDAFSIRKEMRD 652 (665)
Q Consensus 635 ~~~g~---------------~~~A~~~~~~~~~ 652 (665)
..+.. ..+|...|+++++
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 66655 6677777777755
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.2 Score=48.05 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCc---chhhHHHHHHHhcCChhhHHHhhhcCCCC--
Q 043580 44 QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDP---VACNIMISGYIRNDRLNDAREVFDKTPIK-- 118 (665)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-- 118 (665)
++-+.+... |.+...|..|+.-|.-.|..++..++++++..|-| ..|...+++=....++...+.+|.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444443332 67888999999999999999999999999988754 36666666666667787888887765432
Q ss_pred CcccHHHHHHHH
Q 043580 119 CCVSYTSMIMGF 130 (665)
Q Consensus 119 ~~~~~~~ll~~~ 130 (665)
+...|..-+.-.
T Consensus 108 ~ldLW~lYl~YI 119 (660)
T COG5107 108 NLDLWMLYLEYI 119 (660)
T ss_pred cHhHHHHHHHHH
Confidence 344455554433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.32 Score=49.99 Aligned_cols=338 Identities=12% Similarity=0.103 Sum_probs=183.5
Q ss_pred CCCCCCHHHHHH-----HHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh--HHHHHHHHhcc-C--
Q 043580 281 DGIAPNDVMIVD-----LISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI--NLARLQFELGI-K-- 350 (665)
Q Consensus 281 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~-~-- 350 (665)
-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..++.....-+.+..+. +.+.+.++..+ .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 466666655543 3455566677777777766654332222 56666666666665432 22233332211 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 351 DHIASWNALIAGFIRNGMIEDARQLFNNMQKR--------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 351 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
-...+|....+.-...|+.+-|..+++.=... +..-+...+.-....|+++-...++-.+..+ .+...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 23345666777777788888888877653322 3334455556666677777776666655542 111111
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHchhC---CCCcchHHHHHHHHH
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEV-FYHIRDR---TTSVSPWNAIICGLA 498 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~---~~~~~~~~~l~~~~~ 498 (665)
...+ .+...|..++..+.+..-. ..+-+.|-...+...+-.+ ++..... .+-.........++.
T Consensus 582 ~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 FMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 1111 1222333333333321100 1111222222222211111 1110000 111222233333444
Q ss_pred hcCC----------hHHHHHHHHHHHH-cCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH
Q 043580 499 MHGD----------ANLTLKIYSDLEK-RNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL 567 (665)
Q Consensus 499 ~~~~----------~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (665)
+... ..+-+.+.+.+.. .|......+.+-.+.-+...|+..+|.++-.+.+ -||...|-.-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 3332 1112222222222 1223334455556666777888888888877765 5788888888899
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 568 LGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+...++|++-+++-+.... +.-|.-++.+|.+.|+.++|..++-+.-++. -...+|.+.|++.+|.+.-
T Consensus 725 La~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 9999999988888777653 4557778889999999999998887664433 4567888999999988765
Q ss_pred HHH
Q 043580 648 KEM 650 (665)
Q Consensus 648 ~~~ 650 (665)
-+-
T Consensus 794 ~~~ 796 (829)
T KOG2280|consen 794 AEH 796 (829)
T ss_pred HHh
Confidence 443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0072 Score=47.63 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLN--SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+|+.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888888775554 23566677778888888888888888776421111 222223344566
Q ss_pred hhcCChHHHHHHHHhC
Q 043580 569 GRAGQLEDAEEVIRSM 584 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~ 584 (665)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6778888888776543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.19 Score=47.33 Aligned_cols=285 Identities=14% Similarity=0.154 Sum_probs=178.1
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHhhcC---CCCcchHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCChhH--HHHH
Q 043580 355 SWNALIAGFIR--NGMIEDARQLFNNMQ---KRDVYSWSAMISG--YAQNEQPNMALELFHGMVDAGVKPNEIT--MVSV 425 (665)
Q Consensus 355 ~~~~l~~~~~~--~~~~~~a~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l 425 (665)
.|..|-.+++- .|+-..|.++-.+.. ..|....--++.+ -.-.|+++.|.+-|+.|.. .|.... +..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 45566655543 466666766665443 2344444444433 3346888999999988876 333322 3333
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCcc--hHHHHHHHHH--
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTSVS--PWNAIICGLA-- 498 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~--~~~~l~~~~~-- 498 (665)
.-.--+.|+.+.|.++-+..-..- +.-.......++..+..|+++.|+++++.-... .++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444456788888887777765432 122245567788888889999998888766554 33332 2333443322
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCChHH-HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 499 -MHGDANLTLKIYSDLEKRNIKLNSIT-FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 499 -~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
-.-++..|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .|.+.++... .+.+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--
Confidence 23455666665555554 4666543 334456788889999999999988744 6665554332 33455553
Q ss_pred HHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHH
Q 043580 577 AEEVIRSMP----MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-GRWEDAFSIRKEM 650 (665)
Q Consensus 577 A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 650 (665)
+..-+++.. .+| +..+...+..+....|++..|..-.+.+....|.... |..|+.+-... |+-.+++..+-+.
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHHHHH
Confidence 333233221 334 5566777788888899999999999999999998766 66777775544 8988888888666
Q ss_pred HhC
Q 043580 651 RDC 653 (665)
Q Consensus 651 ~~~ 653 (665)
...
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0032 Score=59.26 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=80.6
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.++..++-+|.+.+++.+|+....+.. .+++...+..-..++...|+++.|...|+++++++|++-.+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 467778889999999999999998876 456788888889999999999999999999999999999988888887766
Q ss_pred cCChh-HHHHHHHHHHhC
Q 043580 637 AGRWE-DAFSIRKEMRDC 653 (665)
Q Consensus 637 ~g~~~-~A~~~~~~~~~~ 653 (665)
..++. ...++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 66544 448889988663
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0052 Score=59.50 Aligned_cols=144 Identities=10% Similarity=0.086 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHc-CCCCC-hHHHHHHHHHhccc---------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 502 DANLTLKIYSDLEKR-NIKLN-SITFIGVLSTCCHA---------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 502 ~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|.++-++.. .+.| |+.....+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 456788888888822 23554 44566665555432 23445666666665 5677 7888888888888
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH--HHHHHHHhcCChhHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV--LLSNIYADAGRWEDAFS 645 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 645 (665)
-.++++.|...|++.. ..| ...+|......+...|+.++|.+.++++++++|.-..+-. ..+..|+..+ .++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 8888999999998876 445 4677777778888889999999999999999997665433 2333455544 566777
Q ss_pred HHHH
Q 043580 646 IRKE 649 (665)
Q Consensus 646 ~~~~ 649 (665)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=61.77 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 590 VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
...+..+..++.+.+++..|+....++++++|++...++.-|.+|...|+++.|+..|+++++....
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3466788889999999999999999999999999999999999999999999999999999886543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.026 Score=43.90 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=88.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
..-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-+-|.+.|- .....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34567888888888887763 34455555555555555556666677766554444441 112234555555443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.....+..+..+...|.-++-.++++.+...+..+|.....++.+|.+.|+..+|.++++++-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444556777889999999999999988767777888999999999999999999999999999984
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=53.91 Aligned_cols=89 Identities=11% Similarity=-0.060 Sum_probs=69.7
Q ss_pred CCcccHHHHHHHHh-----hcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccC----------------ChHHHHH
Q 043580 118 KCCVSYTSMIMGFA-----QNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLG----------------GIWECRM 176 (665)
Q Consensus 118 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------------~~~~a~~ 176 (665)
.+-.+|..++..|. +.|..+=....+..|.+-|+.-|..+|+.|++.+-+.. ..+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 34445555555554 34677778888999999999999999999999886422 3456888
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhccCCH
Q 043580 177 LHGLVIKLMIDGFVIISTNLLNMYCVCSSL 206 (665)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 206 (665)
++++|...|+-||..++..|++++++.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999877663
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.02 Score=52.10 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc---CChHHHHHHHHhCC-CCC-CHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA---GQLEDAEEVIRSMP-MKA-DVVI 592 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~~-~~~~ 592 (665)
+-|...|-.|...|...|+.+.|...|....+ +.| |+..+..+..++..+ ....++..+++++. ..| +...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 55778888888999999999999988888874 466 677777777776543 25677888888876 334 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
..-|...+...|++.+|...++.+++..|.+.+-
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 6677777889999999999999998888877663
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.45 Score=48.38 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=135.8
Q ss_pred CCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcC--------CchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcc
Q 043580 152 IPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MID--------GFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIV 222 (665)
Q Consensus 152 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 222 (665)
.|.+..|..+.......-+++.|+..|-..... |++ .+...-. ...-+--|++++|++++-++..+|
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 466667776666655555555555444322111 110 0111111 122233588888888888888777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043580 223 SWNVMLNGFAKAGLVELARELFERIPSK-----DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISAC 297 (665)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (665)
..+..+.+.|++-.+.++++.-... -...|+.+...++....|++|.+.|..-.. ....+.++
T Consensus 765 ---LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 765 ---LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ---hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 4456667778888888877764432 134677788888877788888877765421 11234444
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 043580 298 GRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFN 377 (665)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 377 (665)
.+..++++-..+.. .++.+....-.+.+++.+.|.-++|.+.+-+--.|. ..+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322 345667777788888888888888877664433332 34556777777888877777
Q ss_pred hcCCCCcchHH--------------HHHHHHHhCCCchHHHHHHHHHHH
Q 043580 378 NMQKRDVYSWS--------------AMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 378 ~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
...-|.+.+.- .-|..+.+.|++-.|-+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 66544332211 123334455665556666655543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.058 Score=49.30 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcccchhhHHHHHHHH
Q 043580 257 TMIDGYLQVERLSEALTMYRAMLCD--GIAPNDVMIVDLISACGRAMAFGEGLQIHSII 313 (665)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 313 (665)
.+..-|.+.|.+..|+.-++.+.++ +.+........+..++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566777777777777777654 23334445555666666666666666555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=60.58 Aligned_cols=245 Identities=11% Similarity=0.056 Sum_probs=134.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChh----HHHHHHHHHHccCcHHHHHHHHHHHH--H--cCCCC-ChhHHHHHHH
Q 043580 392 SGYAQNEQPNMALELFHGMVDAGVKPNEI----TMVSVFCAIASSGTLKEGRWAHEYVL--N--NSITL-NDNLSAAIID 462 (665)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~ 462 (665)
.-+|+.|+....+.+|+..++.| ..|.. .|..+-++|...+++++|.++...=+ . .|-.. .......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788888888899998888877 33333 35555666677777777777654421 1 11111 1112223444
Q ss_pred HHHhcCCHHHHHHHHHHchhC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
.+--.|.+++|.-...+-... ......+..+...|...|+.-... .-.+.|-.|+.. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev-----------~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEV-----------T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHH-----------H
Confidence 444455555554332221110 111122223333333222210000 000001111110 0
Q ss_pred ChHHHHHHHHHHhHhh---cCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC-C------CC-CCHHHHHHHHHHHHhc
Q 043580 536 GLVDLGERYFKSMKSV---YNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM-P------MK-ADVVIWGTLLAASRIH 603 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~-~~~~~~~~l~~~~~~~ 603 (665)
..++.|.++|.+-.+. .|-.. --..|..|.+.|.-.|+++.|+..-+.= . .+ .....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 1223444444432211 01111 2456778888888899999998765432 1 11 3456778899999999
Q ss_pred CCHHHHHHHHHHHh----ccCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 604 GNVEVGERAAKSLA----GLQPS--HGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 604 g~~~~A~~~~~~~~----~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|+++.|.+.|++.+ ++.-. .....+.|++.|.-..++++|+.+..+=+.
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 33333 345588999999999999999999876543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=55.57 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCChh
Q 043580 570 RAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG---PSRVLLSNIYADAGRWE 641 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~ 641 (665)
+.|++.+|...|.....+ | .+..+..|+.+++..|+++.|...|..+.+-.|+++ ..++.|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555544311 1 223333455555555555555555555555444433 33555555566666666
Q ss_pred HHHHHHHHHHh
Q 043580 642 DAFSIRKEMRD 652 (665)
Q Consensus 642 ~A~~~~~~~~~ 652 (665)
+|..+|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.16 Score=42.41 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHH
Q 043580 451 TLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LNSITFIG 527 (665)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ 527 (665)
.|+......|...+.+.|+..+|...|++.... -.|......+..+....+++..|..+++++.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 344444445556666666666666666655544 334445555556666666666666666666654310 02334455
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIR 582 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (665)
+...+...|.+..|...|+...+ .-|++..-......+.+.|+.++|..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 56666677777777777777763 35655555555566667776666554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.03 Score=49.40 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=97.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----CCcccHHHH-----
Q 043580 157 TLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----RNIVSWNVM----- 227 (665)
Q Consensus 157 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l----- 227 (665)
..+.+++++.-.+.+.....++..+++...+.++.....|.+.-.+.||.+.|...|+.+.+ -|....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567777778888888888899998888888888888899998999999999999987664 222233332
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 043580 228 LNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDL 293 (665)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 293 (665)
...|.-++++.+|...+.+++. .|+..-|.-.-+..-.|+...|++.++.|+. +.|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 2335566788888888887775 3455556555556667889999999999987 45554444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=51.95 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPSHGPS-----------------RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+|...++.++...|+++-. -..++..|.+.|.+..|..-++.+++
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3567777777777777777544 24567789999999999999999876
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=50.87 Aligned_cols=98 Identities=10% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHchhCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc--------------
Q 043580 475 EVFYHIRDRTTSVSPWNAIICGLAM-----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA-------------- 535 (665)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------- 535 (665)
..|+.......+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 3444443334566667777776654 467777788889999999999999999999877652
Q ss_pred --ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCC
Q 043580 536 --GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 536 --~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (665)
.+-+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2457789999999988 999999999999999876653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.12 Score=45.66 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----CCCCChhHHHHH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVY----NVEPDLKHYGCM 564 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 564 (665)
+.+.++..+...|.+.-.+..+++.++...+.++.....+.+.-.+.||.+.|..+|++..+.. ++.-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556777777788888899999999987656677888888888899999999999999877542 222223333344
Q ss_pred hhHhhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
...|.-++++.+|...+.++... .++...|+-.-+..-.|+...|++.++.+++..|.....-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 55566778888888888887632 34455555555666778999999999999999998776543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0091 Score=53.47 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CC-CCHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MK-ADVVIWGTLL 597 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~l~ 597 (665)
.|+.-+. +.+.|++..|...|....+.+--.+ ....+-.|.+++...|++++|..+|..+. .. .-++.+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4655554 4567789999999999987633233 45567789999999999999999988875 22 3568889999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.+..+.|+.++|...++++++-.|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999998775
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0012 Score=48.14 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=42.5
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-----MK---AD-VVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
..+++.+..+|...|++++|++.+++.. .. |+ ..++..+..++...|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456677777777777777777776654 11 22 456777778888888888888888887654
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.092 Score=51.19 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=90.5
Q ss_pred HHHHHHHHHHch---hCCCC-cchHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 470 INTAFEVFYHIR---DRTTS-VSPWNAIICGLAM---------HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
.+.|..+|.+.. ...|+ ...|..+..++.. ..+..+|.++.++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456777888877 43343 3345555444432 123456677777777765 567777777777777777
Q ss_pred hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 043580 537 LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRS-MPMKADV---VIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 611 (665)
+.+.|...|++.. .+.| ...+|......+.-.|+.++|.+.+++ +...|.. ....-.+..|+.. -.+.|+.
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 7888888888887 5678 466676777777778888888888888 4455543 2223333344443 3566666
Q ss_pred HHHHHh
Q 043580 612 AAKSLA 617 (665)
Q Consensus 612 ~~~~~~ 617 (665)
+|-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.57 Score=44.65 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
.+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++-.. .-++..|...++++.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 3344444444444444433321 34555555555555555555544443221 112344455555555555
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 573 QLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
+..+|..++.++.. ..-+..|.+.|++.+|.+..
T Consensus 252 ~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHH
Confidence 55555555555321 22334445555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.47 Score=43.55 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=40.4
Q ss_pred hhhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 568 LGRAGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
+...++.++|...+.+.. ..+ ....+..+...+...++++.|...+.++....|.....+..++..+...|+.+++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 334455555555554443 111 23444444445555555555555555555555553333444444444444455555
Q ss_pred HHHHHHHh
Q 043580 645 SIRKEMRD 652 (665)
Q Consensus 645 ~~~~~~~~ 652 (665)
..+.+...
T Consensus 257 ~~~~~~~~ 264 (291)
T COG0457 257 EALEKALE 264 (291)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.91 Score=46.85 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=79.2
Q ss_pred HHcCCCCCHhhHHH-----HHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC---HHHHHHHHhhccC
Q 043580 147 RILGVIPNEVTLAS-----VISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS---LVEARSLFDEMKE 218 (665)
Q Consensus 147 ~~~g~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~ 218 (665)
..-|+..+..-|.. +|.-+...+.+..|.++-..+-..-... ..++......+.+..+ .+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34566666655543 4445556666667766665553322222 4555555555555432 2223333333333
Q ss_pred --CCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 219 --RNIVSWNVMLNGFAKAGLVELARELFERIPSK--------DVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 219 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
....+|..+.+.....|+.+-|..+++.=+.. +...+...+.-..+.|+.+-...++-.+..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34567888888888888888888888754431 444566677777788888888777777654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.15 Score=49.80 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 043580 607 EVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~ 626 (665)
..|.+.+.++++.+|-.+.+
T Consensus 363 ~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHHHHhCCCCchh
Confidence 34678888999988877764
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.091 Score=53.36 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS------ITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLK 559 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 559 (665)
+..++....-.||-+.+++.+.+..+.+---.+ -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 444444445556666666666555442211111 123333333332 45678889999998855 67655
Q ss_pred HHHH-HhhHhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-HHHHH
Q 043580 560 HYGC-MVDLLGRAGQLEDAEEVIRSMPM-K-----ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-RVLLS 631 (665)
Q Consensus 560 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~ 631 (665)
.|.. -.+.+...|+.++|++.++++.. + .....+-.+.+++....++++|...+.++.+.+.-+... .+..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 45666778999999999987652 1 233455667788888999999999999998876665444 44666
Q ss_pred HHHHhcCCh-------hHHHHHHHHHHh
Q 043580 632 NIYADAGRW-------EDAFSIRKEMRD 652 (665)
Q Consensus 632 ~~~~~~g~~-------~~A~~~~~~~~~ 652 (665)
-++...|+. ++|.++++++-.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 678888988 888888888755
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.13 Score=51.55 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhccCChhHHH--HHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHh
Q 043580 24 LALVSALRYCSAHIAVSQGQ--QIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIR 101 (665)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 101 (665)
-.++..-.+|.+-++..--. .-++.+.+.|-.|+.. .+...++-+|++.+|.++|.+--..| .-+..|..
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en-----RAlEmyTD 670 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN-----RALEMYTD 670 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh-----hHHHHHHH
Confidence 44666667777776655433 3345666777667664 35677888899999999997754322 23334444
Q ss_pred cCChhhHHHhhhcCCC--------------CCcccHHHHHHHHhhcCChHHHHHHHH------HhHHcCCCC---CHhhH
Q 043580 102 NDRLNDAREVFDKTPI--------------KCCVSYTSMIMGFAQNDCWREALEVFR------DMRILGVIP---NEVTL 158 (665)
Q Consensus 102 ~~~~~~A~~~~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~a~~~~~------~m~~~g~~p---~~~~~ 158 (665)
.+.++.|.+++..-.. .++.-=.+....+...|+.++|..+.- .+.+.+-+. +..+.
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l 750 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPL 750 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHH
Confidence 4445555444432210 011111223344556666666665422 222222222 33445
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHH
Q 043580 159 ASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVE 238 (665)
Q Consensus 159 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (665)
..+..-+.+...+..|-++|..+-.. .++++.+...+++++|..+-+..++--..+|-....-++..++++
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHH
Confidence 55555555666677777777666433 246677777888888888887777633334444555556666666
Q ss_pred HHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC
Q 043580 239 LARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281 (665)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 281 (665)
+|.+ +|.+.|+-.+|..+++++-..
T Consensus 822 EAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 822 EAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 6654 345667777888888777554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=49.43 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD-----CGMKRL 658 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 658 (665)
.....++..+...|+++.|...+++++..+|-+...+..|..+|...|+..+|++.|+++.+ .|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 34566777788999999999999999999999999999999999999999999999998854 455444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.11 Score=47.13 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT---LLAASRIHGNVE 607 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 607 (665)
....|+..+|...|+..... .| +...--.++.+|...|+.+.|..++..+...-...-+.. -+..+.+..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666665532 34 444555566666666666666666666653322222221 111222222222
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+... +++-...+|++......|+..|...|+.++|.+.+-.++.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 22223446666666666666666666666666665555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=56.38 Aligned_cols=65 Identities=11% Similarity=-0.129 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+...|+.+..+|.+.|++++|+..++++++++|++... ++.++.+|..+|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555532 555555555555555555555555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.041 Score=45.38 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 576 (665)
...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|+..|...... .+ |+..+-....+|...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---LKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCCCccchHHHHHHHhCCHHH
Confidence 34455555555555554432 223444445555555556666666666555422 23 34444445566666666666
Q ss_pred HHHHHHhCCCCC
Q 043580 577 AEEVIRSMPMKA 588 (665)
Q Consensus 577 A~~~~~~~~~~~ 588 (665)
|+..|+....+|
T Consensus 124 A~~~f~~a~~~~ 135 (165)
T PRK15331 124 ARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHhCc
Confidence 666665555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.35 Score=41.63 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=101.3
Q ss_pred hcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERY 544 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 544 (665)
..|-+.-|.--|.......|+ +.+||-+.--+...|+++.|.+.|+...+....-+....|.-+ ++.-.|++..|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 334445555555555555454 4567777777788889999999888888754222222233222 34457888888876
Q ss_pred HHHhHhhcCCCCChhHHHHHhhHhh--hcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 545 FKSMKSVYNVEPDLKHYGCMVDLLG--RAGQLEDAEEVI-RSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+...-+. .|+.. |.+| ..|. ..-++.+|..-+ ++.. +.+..-|...+-.+.- |+.. -+.+++++.+...
T Consensus 156 ~~~fYQ~---D~~DP-fR~L-WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 156 LLAFYQD---DPNDP-FRSL-WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHhc---CCCCh-HHHH-HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 6665533 45211 2222 2222 334666776544 4443 3455556554444332 1110 1223333333322
Q ss_pred CC-------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 622 SH-------GPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 622 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
++ ..+|+.|++.|...|+.++|..+|+-++.-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 244888999999999999999999877653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.6 Score=44.78 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHhhcCC-CCcchhhHHHHHH----------HhcCChhhHHHhhhcCCCCCcccH
Q 043580 55 ESNTFIQNSLINLYAKCGLISQAKSMFDSCST-LDPVACNIMISGY----------IRNDRLNDAREVFDKTPIKCCVSY 123 (665)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~----------~~~~~~~~A~~~~~~~~~~~~~~~ 123 (665)
.|.+..|..|...-.+.-.++.|+..|-+... +.......|-..+ +--|++++|++++-.+.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777777777777777777777776655433 1111111111111 123778888888877765543
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhHHcCCCCC----HhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 043580 124 TSMIMGFAQNDCWREALEVFRDMRILGVIPN----EVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNM 199 (665)
Q Consensus 124 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (665)
.|..+.+.|++..+.+++..= |-..| ...++.+...++....++.|.+.+...... ...+.+
T Consensus 766 --Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 345555666666665554331 11111 124555555566656666665555433211 123344
Q ss_pred HhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCC
Q 043580 200 YCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIP 248 (665)
Q Consensus 200 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (665)
+.+..++++-+.+...+++. ......+..++...|.-++|.+.+-+..
T Consensus 832 ly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 44444444444444333332 2233344444555555555555444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=42.67 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh----hcCCCCChhHH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS----VYNVEPDLKHY 561 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~ 561 (665)
...++..+...|+++.|..+++.+.... +-|...|..++.+|...|+...|.+.|+++.+ ..|+.|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777754 44666777777777777777777777776643 34777765543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.01 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
..|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566666677777777777777777766653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.3 Score=42.90 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHH-HHH
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHY-GCM 564 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 564 (665)
..+|...+..-.+....+.|..+|-++.+.| +.++...+++++.-++ .|+...|.++|+.-... .||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777777777888888888888887 5667777777777555 47778888888876643 4543333 334
Q ss_pred hhHhhhcCChHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPMK----ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
+..+.+-++-+.|..+|+....+ .-..+|..++.--..-|+...+..+-+++.+..|.....-
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~e 539 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHH
Confidence 55566778888888888865422 2256788888877888888888888888888888765543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.96 Score=41.38 Aligned_cols=199 Identities=15% Similarity=0.058 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHHHHH-
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNN-SITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNAIIC- 495 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~- 495 (665)
...+......+...+....+...+...... ........+......+...+++..+...+.......++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555556666666666655555442 223333455556666667777778888887777653333 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhHhh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKL----NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDLLG 569 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 569 (665)
.+...|+.+.+...+++.... .| ....+......+...++.+.+...+...... .|+ ...+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHH
Confidence 678889999999999888552 33 2334444444466788999999999998853 443 677888888888
Q ss_pred hcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 570 RAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..++++.|...+.... ..|+ ...+..+...+...|..+.+...+.+.....|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999988876 3344 456666666666777899999999999999888
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.91 Score=40.69 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-----
Q 043580 464 YAKCGSINTAFEVFYHIRDRTTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----- 534 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----- 534 (665)
-.+.|++++|.+.|+.+...-|. ..+.-.++-++.+.++++.|+..+++....-......-|...+.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45667888888888877766222 223444556667778888888888777765322122233333333332
Q ss_pred --cChHHH---HHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHH
Q 043580 535 --AGLVDL---GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIW--GTLLAASRIHGNVE 607 (665)
Q Consensus 535 --~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~ 607 (665)
..|... |..-|+.+..+ -||.. -...|...+..+. +.... ..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 122222 33333333332 33211 1111111111110 00011 23455678888888
Q ss_pred HHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 043580 608 VGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
.|..-++++++--|+.+.. +..+..+|...|-.++|.+.-+- ++.+..+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s 237 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV-LGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCC
Confidence 8888888888877766554 55677778888888888776543 34444333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=48.94 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=76.3
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRI 602 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 602 (665)
.-+.+.|++++|..-|...... +.|. ...|..-+.++.+.++++.|+.-..+.. ..|+ ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4567788888888888888753 2221 2345555666777888888887776665 4442 2333333456777
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH--HHHHHHHhCC
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF--SIRKEMRDCG 654 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~~ 654 (665)
...++.|+.-|+++.+.+|....+....+.+--......+++ +++.++++.|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888888887766555555433333333333 2344454444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.2 Score=41.89 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred HhCC-CchHHHHHHHHHHHC--------CCCCCh-----hHHHHHHHHHHccCcHHHH---HHHHHHHHHcCCCCChhHH
Q 043580 395 AQNE-QPNMALELFHGMVDA--------GVKPNE-----ITMVSVFCAIASSGTLKEG---RWAHEYVLNNSITLNDNLS 457 (665)
Q Consensus 395 ~~~~-~~~~a~~~~~~m~~~--------~~~p~~-----~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~ 457 (665)
...+ +++.|..++++..+. ...|+. .++..++.++...+..+.. ..+++.+.. ..+..+.++
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~ 124 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVF 124 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHH
Confidence 3444 666666666554332 122222 2334445555555444333 233333321 112222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCC
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLA--MHGDANLTLKIYSDLEKRNIKLN 521 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~ 521 (665)
..-++.+.+.++.+.+.+.+.+|....+ ....+...+..+. .......|...+..+....+.|.
T Consensus 125 ~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 125 LLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 3344444445566666666666655422 2334444444331 12233444455555444444443
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0096 Score=34.72 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=41.69 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCCCCCch
Q 043580 606 VEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...|...|+++++..|++.-.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 678888999999999987643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.97 E-value=1 Score=43.48 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCC---CCCChhHHHHHHHHHHc---cCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAG---VKPNEITMVSVFCAIAS---SGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
.++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555555666666655555421 00111111122233333 5555555555555444444445555544444
Q ss_pred HH
Q 043580 463 MY 464 (665)
Q Consensus 463 ~~ 464 (665)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 33
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.2 Score=39.96 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=69.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNI-KL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (665)
-.+.|++++|.+.|+.+..... .| ...+...++-++.+.++++.|+...++..+.+.-+||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~---- 118 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY---- 118 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH----
Confidence 3455666666666666664420 11 233445555566666666666666666665544444422 2222222220
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----------------HHHHHHHHHh
Q 043580 575 EDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----------------RVLLSNIYAD 636 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~ 636 (665)
+.... ..-|. .-...|..-++..+...|++.-. -...+..|.+
T Consensus 119 ------~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 119 ------FFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred ------hccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000 01233444445555555554321 3467778999
Q ss_pred cCChhHHHHHHHHHHhC
Q 043580 637 AGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~~ 653 (665)
.|.+..|..-++++++.
T Consensus 180 r~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 180 RGAYVAAINRFEEVLEN 196 (254)
T ss_pred hcChHHHHHHHHHHHhc
Confidence 99999999999999874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.5 Score=42.79 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+...+..-.+.|+.+.+.-.|++..-. ..-...|-..+.-....|+.+.|..++....+--.+-.+.+...-..-+-
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 46666677777888888888888877653 12233455555555556888888888777665433333332222222334
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHH---HHHHhCC-CCCCHHHH----HHHHHH-HHhc
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAE---EVIRSMP-MKADVVIW----GTLLAA-SRIH 603 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~----~~l~~~-~~~~ 603 (665)
..|+++.|..+++.+.+. . |+ ...-..-+....+.|+.+.+. +++.... .+-+..+. ....+- +.-.
T Consensus 378 ~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 568999999999999985 3 64 333333455566888888888 5554443 22232222 222322 4457
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
++.+.|..++.++.+..|++-..+..+.......+
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 89999999999999999999998888887766655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.093 Score=41.90 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..++..++.++++.|+++....+++..-....+.. ...+. --......|+..++.+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 45667777778888888777777766544311100 00000 0112346788888888888888
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLG 569 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (665)
..|++..|.++.+.+.+.++++-+..+|..|++-..
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888888886667778877766443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.5 Score=48.93 Aligned_cols=312 Identities=11% Similarity=0.034 Sum_probs=175.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-c---CC--chhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCc
Q 043580 327 TIIHFYAACGRINLARLQFELG-I---KD--HIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQP 400 (665)
Q Consensus 327 ~l~~~~~~~g~~~~a~~~~~~~-~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 400 (665)
.+..+-.+++.+..|...++.- . +. ....|..+...|..-+++|....+... ...+...+.. |......|++
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~q-il~~e~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQ-ILEHEASGNW 1465 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHH-HHHHHhhccH
Confidence 4555777888899998888862 1 11 122344555589999999888888774 1223333333 3345667999
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 401 NMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMYAKCGSINTAFEVFYH 479 (665)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 479 (665)
..|...|+.+.+.+ ++...+++.++......+.++...-..+-..... .+.. ..++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999864 4447778888888888888777666544443322 1222 222333344467777777666655
Q ss_pred chhCCCCcchHHHH--HHHHHh--cCChHHHHHHHHHHHHcCCCCC---------hHHHHHHHHHhcccChHHHHHHHHH
Q 043580 480 IRDRTTSVSPWNAI--ICGLAM--HGDANLTLKIYSDLEKRNIKLN---------SITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 480 ~~~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
. .+...|... .....+ ..|.-.-...++.+++.-+.|= ...|..++....-. +.+..
T Consensus 1543 --~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~----- 1612 (2382)
T KOG0890|consen 1543 --D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS----- 1612 (2382)
T ss_pred --c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH-----
Confidence 1 333344433 222222 2232222234444443322220 01222222221111 01111
Q ss_pred HhHhhcCCCCCh------hHHHHHhhHhhhcCChHHHHHHHHhCC----CC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 547 SMKSVYNVEPDL------KHYGCMVDLLGRAGQLEDAEEVIRSMP----MK-----ADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 547 ~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.....++.++. ..|..-+..-....+..+-+--+++.. .. .-..+|-+........|.++.|..
T Consensus 1613 -~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1613 -IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred -HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111344421 112222221111112222222222211 12 245788889999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
.+-++.+.. -+..+.-.++.++..|+...|+.++++.++....
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999988766 5567888899999999999999999999876543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.16 Score=47.19 Aligned_cols=224 Identities=12% Similarity=0.000 Sum_probs=94.1
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHHHhc
Q 043580 395 AQNEQPNMALELFHGMVDAG--VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN--SITLN---DNLSAAIIDMYAKC 467 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~ 467 (665)
....+.++|+..+.+-..+- ..---.+|..+..+.+..|.++++...--.-+.. ....+ ...|..+.+.+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766654421 1112234555566666666666654432222110 00011 11222333333333
Q ss_pred CCHHHHHHHHHHchhC---CC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--ChHHHHHHHHHhcccC
Q 043580 468 GSINTAFEVFYHIRDR---TT---SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK---L--NSITFIGVLSTCCHAG 536 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~ 536 (665)
.++.+++.+-..-... .+ .-.....+..++...+.++++++.|+...+---. | ....+..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3333333333222221 01 0012233444455555566666665554432111 1 1124555555555556
Q ss_pred hHHHHHHHHHHhHhh---cCCCCChhHHH-----HHhhHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSV---YNVEPDLKHYG-----CMVDLLGRAGQLEDAEEVIRSMP----MKAD----VVIWGTLLAAS 600 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~---~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~ 600 (665)
|+++|.-+..+..+. +++.--..-|. .|..++...|....|.+..++.. ..-| ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666655544443221 12221111122 23334445555555555554432 1112 22233444555
Q ss_pred HhcCCHHHHHHHHHHHhc
Q 043580 601 RIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~ 618 (665)
...|+.|.|..-|+++.+
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 555666665555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.33 Score=44.72 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=88.8
Q ss_pred hcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH----HHHHHhcccChHHH
Q 043580 466 KCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI----GVLSTCCHAGLVDL 540 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~ 540 (665)
-.|+..+|...++++.+. +.|..++..-=.+|...|+...-...++++... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666665 555666666666777777777666666666654 234433222 22233445677777
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKA-------DVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
|.+.-++.. .++| |.-...++...+--.|++.++.+++.+-...- .-..|.. .-.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 777666665 4555 55556666666667777777777776654211 1111211 1123344667777777
Q ss_pred HHHH--hccCCCCCchH
Q 043580 613 AKSL--AGLQPSHGPSR 627 (665)
Q Consensus 613 ~~~~--~~~~p~~~~~~ 627 (665)
|..= .+++.++....
T Consensus 270 yD~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHHhhccchhhh
Confidence 7443 34555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.75 Score=36.21 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
.-+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444555555565556665555433 555555556666666666666666666655544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.9 Score=41.11 Aligned_cols=148 Identities=11% Similarity=-0.009 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHH
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHY 561 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~ 561 (665)
..+|..++..+.+.|.++.|...+.++...+... .+.....-+......|+..+|+..++..... .+.. +....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777777888888888888877777643222 2333344455556667778888877777652 1111 11111
Q ss_pred HHHhhHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 562 GCMVDLLGRAGQLEDAEEVI-RSMPMKADVVIWGTLLAASRIH------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
..+...+.. ..+.....- .......-...+..+...+... ++.+.+...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 000000000 0000000112233333333344 7889999999999999999999988888876
Q ss_pred Hhc
Q 043580 635 ADA 637 (665)
Q Consensus 635 ~~~ 637 (665)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.5 Score=38.84 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCCchH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-------MKADV-VIWGTLLAASRIHGNVEVGERAAKSLAG----LQPSHGPSR 627 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~ 627 (665)
.+..+.+.|.+..++++|...+.+-. .-++. ..+...+-.+....|+..|+..++...+ +.|++....
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445555666666666655544432 01221 2233444444555566666666666433 234444445
Q ss_pred HHHHHHHHhcCChhHHHHHH
Q 043580 628 VLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~ 647 (665)
..|..+| ..|+.+++.+++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5554433 455666655544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.3 Score=36.45 Aligned_cols=127 Identities=9% Similarity=-0.024 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLL 568 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (665)
....++..+...+.+.....+++.+...+ ..+...++.++..|++.+. ......++. .++.......+..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456666666677777777777777765 3566677777777776543 333344432 12223333456666
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH-GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
.+.+.++++.-++.++.. +...+..+... ++.+.|++++++ ++++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 677777777777777642 22233333333 677777777765 234445555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.24 E-value=6.2 Score=43.58 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHH----HccCcHHHHHHHH
Q 043580 367 GMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAI----ASSGTLKEGRWAH 442 (665)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 442 (665)
++++.|+.-+..+. ...|...++.-.++|.+.+|+.++ .|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444443 223333344344455555555553 56666655444443 3344555554444
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS--PWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+..-+ ....+.+|..+|++.+|..+-.++... .+.. .-..|+.-+...+++-+|-+++.+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----
Confidence 43321 122445566666666666666555442 1111 1245666666777777777776665542
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMK 549 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 549 (665)
....+..+++...|++|.++-....
T Consensus 1029 ----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2334455667777777777666544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.036 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+..|+.+|.+.|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66789999999999999999998653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=5.1 Score=42.37 Aligned_cols=176 Identities=12% Similarity=0.083 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCee---eHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPSKDVV---SWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
...-|..+.+...++-|+.+-+.-..+... ....-.+.+.+.|++++|...|-+-... +.|+ .+|.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 344455555555666666655544332111 1222233445667777777776665432 3443 234444444
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCch-hhHHHHHHHHHhcCCHHHHHHHHhhc
Q 043580 301 MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHI-ASWNALIAGFIRNGMIEDARQLFNNM 379 (665)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 379 (665)
.....--.+++.+.+.|+. +......++.+|.+.++.+.-.++.+..-.... .-....+..+.+.+-.++|.-+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4555555566666666644 334445677777777777777666654442111 12344555566666666666655544
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 043580 380 QKRDVYSWSAMISGYAQNEQPNMALELFHGM 410 (665)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 410 (665)
.. .......++ -..+++++|++.+..+
T Consensus 490 ~~-he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 33 333333333 3456778888777665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.57 Score=47.72 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHH-HHhcccChHHHHHHHHHHhHhh-cCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVL-STCCHAGLVDLGERYFKSMKSV-YNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
.+.+.|.++++.+.+. -|+...|...- +.+...|+.++|++.|++.... ...+. ....+--++.++.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445566666666553 45444443322 2334456666666666654321 01111 233344455556666666666
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHh
Q 043580 578 EEVIRSMPM--KADVVIWGTLLAA-SRIHGNV-------EVGERAAKSLA 617 (665)
Q Consensus 578 ~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~ 617 (665)
.+.+.++.. +.+...|..+..+ +...|+. ++|..+++++-
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666666652 2233333333333 2345555 56666665553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.5 Score=38.81 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=89.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (665)
.....|+...|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. .-.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777666643 333455566677777777777777777766432 11111222223345555556666
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 576 DAEEVIRSMPMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL--QPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 576 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+...+-++....| |...-..+...+...|+.+.|.+.+-.++.. .-++......|..++...|.-+.+-..+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5556655655455 5666667777777778887777777666543 3445566677777777776444443333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.4 Score=36.98 Aligned_cols=135 Identities=12% Similarity=0.012 Sum_probs=76.0
Q ss_pred HHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCC
Q 043580 140 LEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKER 219 (665)
Q Consensus 140 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 219 (665)
.+.+.-+.+.++.|+...+..+++.+.+.|.... +.++++.++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556677888888888888888888887654 344455555555444333332222 2223333333333332
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHH
Q 043580 220 NIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLC 280 (665)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 280 (665)
=...+..++..+...|++-+|++..+....-+......++.+..+.++...-..+|+-..+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224455666666777777777777665544444555566666666665555555554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.087 Score=42.07 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=33.5
Q ss_pred cCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcCCchhHHHHHHHHH
Q 043580 149 LGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MIDGFVIISTNLLNMY 200 (665)
Q Consensus 149 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 200 (665)
....|+..+..+++.+++..+++..|.++.+...+. +++.+..+|..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345667777777777777777777777777666554 3555566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.49 Score=47.40 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHH--HchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH
Q 043580 461 IDMYAKCGSINTAFEVFY--HIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV 538 (665)
Q Consensus 461 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 538 (665)
.....-.++++++.++.. .+...-| ..-.+.++.-+.+.|-++.|+++..+-.. -.....+.|+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 445556788888766664 2232212 44577778888888888888887433221 23344567888
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 539 DLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 539 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+.|.++.+.. ++...|..|.+...+.|+++-|++.+++.. -+..|+-.|...|+.+.-.++.+.+..
T Consensus 335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8887755443 366789999999999999999999998886 256677778888888777777776654
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 619 LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 619 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
..-. ...-.++.-.|+.++-.+++.+.
T Consensus 402 ~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 3322 22223455678888888777553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=6.3 Score=41.70 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=97.4
Q ss_pred chhhHHHHHHHhcCChhhHHHhhhcCCCCCc---ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHh
Q 043580 90 VACNIMISGYIRNDRLNDAREVFDKTPIKCC---VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSV 166 (665)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 166 (665)
.....-|..+.+...++.|..+-+.-..+.. .....-...+.+.|++++|...|-+-... +.|. .+|.-|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 3445566667777777777777655443221 12333344556778888888777665532 2222 2444454
Q ss_pred ccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcc--cHHHHHHHHHhcCCHHHHHHHH
Q 043580 167 HLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIV--SWNVMLNGFAKAGLVELARELF 244 (665)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 244 (665)
.......--.+++.+.+.|+...-. -+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|..+-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 4455555556677777777543333 34577888888887777777666652 222 2344555555555555555554
Q ss_pred hhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHH
Q 043580 245 ERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAM 278 (665)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 278 (665)
.+... .......+ +-..+++++|++.+..|
T Consensus 487 ~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 44333 12222222 22346677777766554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.1 Score=40.67 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=53.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++...|+.+.|++.|.+++.+-|..+..|..-+++|.-+|+.++|+.-++++++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3457789999999999999999999999999999999999999999999999998843
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.3 Score=44.51 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=99.1
Q ss_pred HHHhhcCChHHHHHHHH--HhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCC
Q 043580 128 MGFAQNDCWREALEVFR--DMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSS 205 (665)
Q Consensus 128 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 205 (665)
+...-+++++.+.++.. .+.. .+ .......++.-+.+.|-.+.|.++-..-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33455678888776664 1221 11 24457778888888888888887643322 12455678899
Q ss_pred HHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCC
Q 043580 206 LVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAP 285 (665)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 285 (665)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+. .-|..|+-.|.-.|+.+...++.+....+|-
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-----KDFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cCccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 999998887766 4558999999999999999999999884 4577788888888888888888777776552
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHS 311 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~ 311 (665)
++..+.++.-.|+.++..+++.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555677776666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.062 Score=49.36 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=81.8
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 604 (665)
-..-|.+.|.+++|+..|.+.. .+.| |+.++..-+.+|.+..++..|..-+..+. .+.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999988 6688 89999999999999999998888777765 2223344555555666678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
+.++|.+-++.++++.|++... -..|....-..|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL----KKSLARINSLRER 214 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH----HHHHHHhcchHhh
Confidence 8999999999999999996553 3344444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.9 Score=44.75 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS----HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
....+|..+...+.+.|+++.|...+.++.+..+. .+.....-++.++..|+..+|.+.+++.+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999876532 455667778999999999999999999988333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.058 Score=31.31 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555555
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.85 Score=38.84 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=47.6
Q ss_pred HhhHhhhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMPMKADVVIWGT-----LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
+...+..+|++++|...++.....|....+.. |.......|.++.|...+....+-. -.+.....-|.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 34445566666666666665553333333322 2334445666666666655332210 01122345566677777
Q ss_pred ChhHHHHHHHHHHhCC
Q 043580 639 RWEDAFSIRKEMRDCG 654 (665)
Q Consensus 639 ~~~~A~~~~~~~~~~~ 654 (665)
+.++|++.|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777766654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.11 Score=45.32 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=65.9
Q ss_pred hHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP-MKADV-VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
+.|....+++.|+..+.+.. ..|.. ..|..=+.++.+..+++.+..--++++++.|+....++.|+..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 34445566777777666654 56766 34455566677788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 043580 644 FSIRKEMRDC 653 (665)
Q Consensus 644 ~~~~~~~~~~ 653 (665)
+..+.++.+.
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 8888888553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=4.4 Score=38.02 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcC-CHHHHHH-HHhhCCCCCeeeHHHHHHHHhhc
Q 043580 188 GFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAG-LVELARE-LFERIPSKDVVSWGTMIDGYLQV 265 (665)
Q Consensus 188 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~ 265 (665)
++..+-...+.++++.++.+....+..-+.++|...-...+.++++.+ +...+.. +...+..++..+-...+.++.+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 344455555666666665433333333333444444444444444432 1223333 23333345555566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043580 266 ERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVK 315 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 315 (665)
++ ..++..+-...+.+. .....+.++...|+. .+...+..+.+
T Consensus 220 ~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 220 KD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 65 344444444444322 123455566666664 45555555554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=3.3 Score=36.45 Aligned_cols=21 Identities=5% Similarity=-0.173 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHHHHhccCCC
Q 043580 602 IHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..+++.+|+.+|++.....-+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555443333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.081 Score=33.03 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+..|+.+|...|++++|+++|+++++...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999988654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.8 Score=35.25 Aligned_cols=131 Identities=7% Similarity=0.010 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcC--CHHHHHHHHhhcCCCCcch
Q 043580 309 IHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNG--MIEDARQLFNNMQKRDVYS 386 (665)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 386 (665)
..+.+.+.+++++...+..+++.+.+.|++.....+++..+-+|.......+-.+.... -..-|.+.+.++. ..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 33444555666666666666666666666666666666555555444443332222211 1223334444332 24
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 043580 387 WSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (665)
+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++..+.+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666777778888888777654221 122234455565555655555555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.066 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+|.+|...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 357899999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.34 Score=45.15 Aligned_cols=219 Identities=10% Similarity=0.062 Sum_probs=113.3
Q ss_pred HHccCcHHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHHH----chhCCCC---cchHHHHHHHHHh
Q 043580 429 IASSGTLKEGRWAHEYVLNN--SITLNDNLSAAIIDMYAKCGSINTAFEVFYH----IRDRTTS---VSPWNAIICGLAM 499 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~---~~~~~~l~~~~~~ 499 (665)
+....+.+.+...|..-... +....-.++..+..+.++.|.++++...--. ..+.... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777666542 1112224566666777777777765543221 1111111 1234445555555
Q ss_pred cCChHHHHHHHHHHHHc-CCCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCC--ChhHHHHHhhHhhhc
Q 043580 500 HGDANLTLKIYSDLEKR-NIKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEP--DLKHYGCMVDLLGRA 571 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~ 571 (665)
.-++.+++.+-+.-... |..| -.....++..++...+.++++++.|+...+--. -.| ...++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443332 2222 112334455566666677777777776654211 111 234566677777777
Q ss_pred CChHHHHHHHHhCC-------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch----------HHH
Q 043580 572 GQLEDAEEVIRSMP-------MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS----------RVL 629 (665)
Q Consensus 572 g~~~~A~~~~~~~~-------~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------~~~ 629 (665)
.++++|.-+..++. .+.- ..+...+.-++...|..-.|.+.-+++.+ -... ...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k----lal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK----LALQHGDRALQARCLLC 251 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH----HHHHhCChHHHHHHHHH
Confidence 77777665554432 1111 12233444556666666666666666533 1100 234
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 043580 630 LSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
++++|...|+.|.|..-|+.++
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 6666777777777776666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.47 Score=42.65 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=74.6
Q ss_pred HHHHHHchhCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC------------
Q 043580 474 FEVFYHIRDRTTSVSPWNAIICGLAM-----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG------------ 536 (665)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------------ 536 (665)
++.|..+.....+-.+|...+..+.. .+..+-..-.++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444434566677777776653 3566777777889999999999999999998776532
Q ss_pred ----hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCC
Q 043580 537 ----LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQ 573 (665)
Q Consensus 537 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (665)
+-+-++.++++|... |+.||.++-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 334588999999987 999999999999999988764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.14 Score=47.19 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=65.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
..-|.++|.+++|+..|...+.. .| |.+++..-..+|.+...+..|..-....... .- -...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 35688999999999999988874 55 8899999999999999998888877766532 22 234444444444455
Q ss_pred CChHHHHHHHHhCC-CCCCHH
Q 043580 572 GQLEDAEEVIRSMP-MKADVV 591 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~~~~ 591 (665)
|+..+|.+-++... ..|...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 66667766666654 556543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=10 Score=40.45 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChH
Q 043580 499 MHGDANLTLKIYSDLEKRN-IKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (665)
...+.+.|...+....... +.+.. .....+.......+..+++...++..... ..+......-+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 3556788888888775543 22222 23333433333332245667776665422 235555555566666888999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 576 DAEEVIRSMPM--KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 576 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
.+...+..|.. .-...-..-+..++...|+.++|...|+++.. + ..+|-.|+
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 88888888862 22334445567777778999999999998744 2 24555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.55 Score=42.25 Aligned_cols=108 Identities=10% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC------------
Q 043580 373 RQLFNNMQ--KRDVYSWSAMISGYAQN-----EQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG------------ 433 (665)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 433 (665)
+..|.... ++|..+|-+.+..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 35555555 45667777777766543 456667777888999999999999999988876543
Q ss_pred ----cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHc
Q 043580 434 ----TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSIN-TAFEVFYHI 480 (665)
Q Consensus 434 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~ 480 (665)
.-.-+.++++.|...|+.||..+-..|+.++++.+..- +..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23457899999999999999999999999999888643 333443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.69 Score=42.76 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=123.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHH----HHhhHhhhcC
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYG----CMVDLLGRAG 572 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 572 (665)
....|+..+|...|+++.+. .+.|...+...-.+|...|+.+.-...++++.. ..+|+...|. .+..++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888899999886 467888888888999999999999999998874 3456654444 4556667899
Q ss_pred ChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCChhHHHHH
Q 043580 573 QLEDAEEVIRSMP-M-KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
-+++|++.-++.. . +.|...-.++...+...|+.+++.++..+-...=... ...|-+.+-.+.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999999986 3 3456666677777888999999999988764322211 23355677778888999999999
Q ss_pred HHHHHhCCCccCCCc
Q 043580 647 RKEMRDCGMKRLPGF 661 (665)
Q Consensus 647 ~~~~~~~~~~~~~~~ 661 (665)
|++=+-...+|+.+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 988777777776653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.11 Score=30.73 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.55 E-value=15 Score=40.89 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=106.5
Q ss_pred hhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 043580 263 LQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLAR 342 (665)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (665)
..+.++.+-+.++++++. .+++..-|. |+- ..++++.|+.-+..+ +...+....+.-.+.|-+..|.
T Consensus 862 ~SqkDPkEyLP~L~el~~--m~~~~rkF~--ID~--~L~ry~~AL~hLs~~-------~~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKK--METLLRKFK--IDD--YLKRYEDALSHLSEC-------GETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhh--chhhhhhee--HHH--HHHHHHHHHHHHHHc-------CccccHHHHHHHHhcccchhhh
Confidence 345566666666666653 233222221 111 123344444333222 2334455555566677777777
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-- 420 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 420 (665)
.++..+.+.-...|.+..+.+...+.+++|.-.|+..-+ ....+.+|...|+|.+|+.+-.++... -+..
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~ 1000 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVI 1000 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHH
Confidence 766555555555666666777777777777777765532 223456677778888888877665431 1111
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
+-..|...+...+++-+|-++..+.... ....+..|++...+++|.++-....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1245566666677777777666655432 1234556677777777777665544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.53 E-value=9.7 Score=38.78 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=97.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCA 428 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 428 (665)
+..+|...+.--...|+.+.+.-+|+...-+ =...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888888888888888888877654 1223433344344447777777776655543222222221111122
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHHchhCCCCcchHHHHHHHH-----Hh
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMYAKCGSINTAF---EVFYHIRDRTTSVSPWNAIICGL-----AM 499 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~l~~~~-----~~ 499 (665)
+-..|+.+.|..+++.+.+.- |+. .+-..-+....+.|+.+.+. .++........+......+.--+ .-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 334568888888888877654 332 33333445556677777776 44444433333333333333222 23
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 45666666666666664 2445555555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.85 Score=38.86 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLN-----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..+.+ .+.| .......-+.+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHHH
Confidence 3555666666666666655542 221 1233333445555566666665555554 3345 3333334455555
Q ss_pred hcCChHHHHHHHHhCC
Q 043580 570 RAGQLEDAEEVIRSMP 585 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~ 585 (665)
+..++++|++-|+++.
T Consensus 180 k~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL 195 (271)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 6666666666655554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.9 Score=39.41 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccCh--
Q 043580 471 NTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGD----ANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGL-- 537 (665)
Q Consensus 471 ~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~-- 537 (665)
.+|..+++.|++. .++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3455566666555 2333344444333 2222 34566777788887776633 234444443333322
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh
Q 043580 538 VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574 (665)
Q Consensus 538 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (665)
..++.++++.+.+. |+++....|..++-...-.+..
T Consensus 198 v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 198 VARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 34778888888887 8888666677665444333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.11 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..+..+|.+|...|++++|++.++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 357899999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.6 Score=41.71 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=55.8
Q ss_pred CCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCCCchHHH
Q 043580 555 EPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVIWGTLLAASRIHGNVEVGERAAKSLAGL-QPSHGPSRVL 629 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~ 629 (665)
+|-..+-..+..++.+.|+.++|++.++++. ..| .......|+.++...+.+.++..++.+.-++ .|++.+..+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 3434455567888888999999999998885 223 2346678888999999999999999887654 4666666554
Q ss_pred HH
Q 043580 630 LS 631 (665)
Q Consensus 630 l~ 631 (665)
-+
T Consensus 336 aA 337 (539)
T PF04184_consen 336 AA 337 (539)
T ss_pred HH
Confidence 43
|
The molecular function of this protein is uncertain. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=10 Score=37.74 Aligned_cols=174 Identities=7% Similarity=0.028 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
+....-+++..++.+....-.+.+..++...+.+-..+..++.+|... ..+.-..+|+++.+.. -|......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 333444555666666666666666666665555555666666666665 5566666666666643 2222222222222
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC---C---hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP---D---LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKADVVIWGTLLAASRI 602 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 602 (665)
...++.+.+..+|.++... +-| + ...|.-|... -..+.+....+..++. ...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2235556666666665542 222 1 1123222221 1234444555544443 11222333334444555
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
..++.+|+++++..++.+..+.-+...++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 6666666666666666665555554444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.6 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=29.5
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
...++.+++..+++.+. -+.| .+..-..-...+...|+|.+|+.+++++.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556666666666666 4466 33333334455566677777777777765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.52 Score=43.30 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
.++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..|+++.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.22 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.++..+|.+|...|++++|.+.|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35789999999999999999999999874
|
... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.71 E-value=17 Score=39.18 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh
Q 043580 499 MHGDANLTLKIYSDLEKR----NIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS 550 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 550 (665)
..|+++.|+.+.+..... -..+....+..+..+..-.|++++|..+.....+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 456666666666555543 1122333445555555556666666666555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.67 E-value=4.9 Score=33.03 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA 430 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 430 (665)
.++..+...+.+.....+++.+...+ ..+....+.++..++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 34444444444445555555444443 133333444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.08 Score=30.72 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=18.2
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.+.| |+..|..+...|...|++++|+
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3466 6777777777777777777765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.22 Score=28.48 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 627 RVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 627 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++.+|.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=5.8 Score=33.20 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHH-----hhHhhh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSI-TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCM-----VDLLGR 570 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 570 (665)
+.+.+..++|+.-|.++.+.|...-+. ............|+...|...|+++-.. .|.+....-+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 356778889999999998887544332 2223344556789999999999998754 3433333222 334567
Q ss_pred cCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 571 AGQLEDAEEVIRSMPMK--A-DVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
.|.+++....++.+... | ....-..|.-+-.+.|++.+|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 89999988888887632 3 233446677778899999999999998876
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.31 Score=30.16 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|+.+|...|+.+.|+++++++++.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.48 Score=39.32 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChhhH
Q 043580 29 ALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDA 108 (665)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 108 (665)
+++.+.+.+.+....++++.+...+...+...++.++..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677888899999999999999888778899999999999999998999998884433 4445667777777777777
Q ss_pred HHhhhcCC
Q 043580 109 REVFDKTP 116 (665)
Q Consensus 109 ~~~~~~~~ 116 (665)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77666553
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.87 E-value=5.8 Score=35.29 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
|..-..+|....++++|...+.+..+...+..++..-. +.++.|.-+.+++.+. .--...|+.....|...|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 33344455566666666666555543211111111111 1233444444444431 111223444555666777
Q ss_pred hHHHHHHHHHHhHhh-cCCCCC--hhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSV-YNVEPD--LKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~-~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
.++.|-..+++.-+. .+++|+ ...|..-.......++...|.+++ ..+...+.+...+++|-..+
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~------------gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY------------GKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH------------HHhhhHhhhhHHhhHHHHHH
Confidence 776666666654321 034442 223333333333444444444444 44455677777777777766
Q ss_pred HHHhc------cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 614 KSLAG------LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 614 ~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+-.. -.|+....+...+-+|....++..|.+.++.--+
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 65532 2233334466666677778899999999977544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.5 Score=40.49 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK-----RNIKLNSITFIGVL 529 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 529 (665)
++..++..+...|+.+.+...++++... +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3455777777777888888877777776 45666777788888888887777777776654 45666555544443
Q ss_pred HH
Q 043580 530 ST 531 (665)
Q Consensus 530 ~~ 531 (665)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.24 Score=28.30 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
.+-.+..++.+.|+.++|...+++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35567888999999999999999875
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.2 Score=36.22 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=43.9
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 570 RAGQLEDAEEVIRSMP-MKADVVIWGT-LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
..++++++..+++.+. ..|+..-... -.+.+...|++++|..+++.+.+-.|..+.....++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 4667777777777664 3343322222 233466777777777777777776666666666666666666663
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.4 Score=36.48 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=59.1
Q ss_pred hHHHHHhhHh---hhcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 559 KHYGCMVDLL---GRAGQLEDAEEVIRSMP-MKADVVIWGT-LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 559 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
.+.+.|++.. .+.++.+++..++..+. ..|....... -.+.+...|++.+|..+++.+.+-.|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4455555544 46678888988888875 4565444333 33457788999999999999888888888877888888
Q ss_pred HHhcCCh
Q 043580 634 YADAGRW 640 (665)
Q Consensus 634 ~~~~g~~ 640 (665)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 8777764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.33 Score=40.73 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
++|+.-+++++.++|+...++..||.+|..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 344444444455555555555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.26 E-value=12 Score=34.42 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++.....|...|.+.+|.++-++++.++|-+...+..|...|...|+.-.|.+-|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 445567788999999999999999999999999999999999999999999988888743
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.17 E-value=16 Score=35.74 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHchhC--CCCcchHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHhcccChHH
Q 043580 467 CGSINTAFEVFYHIRDR--TTSVSPWNAIICGL-AMHGDANLTLKIYSDLEKRNIKLNS----ITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 539 (665)
.|+..++.+.+..+... ++....+-.|+.+- ....++..|+++|+...-. .|-. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57788888888777665 44555677776654 4567888999999887653 4432 23444455667889999
Q ss_pred HHHHHHHHhHhhcCCCCChhH-HHHHhhHhhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEPDLKH-YGCMVDLLGRA---GQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
++..+-.....+|...|-..- +..+...+.+. -..+.-..++..|...-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888877777777677774333 33333333333 34455555666665444567888888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHH-----hcCChhHHHHHHHHH
Q 043580 616 LAGLQPSHGPSRVLLSNIYA-----DAGRWEDAFSIRKEM 650 (665)
Q Consensus 616 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~ 650 (665)
+..+.... ..-...+.+|. -..+.++|.+.+..+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 98887443 33334444443 334566666666544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.39 Score=39.81 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHH
Q 043580 161 VISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELA 240 (665)
Q Consensus 161 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 240 (665)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444445555555555555555555445556666666666666666666666653222 2233455555555666665
Q ss_pred HHHHhhCCC
Q 043580 241 RELFERIPS 249 (665)
Q Consensus 241 ~~~~~~~~~ 249 (665)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.9 Score=35.99 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=50.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHh--hHHHHHHHHhccCChHHHHHHHHHHHHHh
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEV--TLASVISSSVHLGGIWECRMLHGLVIKLM 185 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (665)
..+..+...|++.|+.+.|.+.|.++.+....|... .+..+|+.+.-.+++..+..........-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467788889999999999999999998876555443 56778888888888888887777766554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.98 E-value=25 Score=37.66 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHhccC---CC------CCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQ---PS------HGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
.+-.|+...|...++.+.+.. |. .+..++..|..+...|+.+.|+..|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346788999999998886543 22 24446777877888899999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.32 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
....|+.++...|+.++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888887775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.62 E-value=1.9 Score=37.35 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A 609 (665)
...|-+..|.--|.+.. .+.| -+..||.|.--+...|+++.|.+.|+... ..|. ..+...-.-++.--|+++.|
T Consensus 76 DSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33455555555555544 4456 35556666666666666666666666654 2221 22222222233445666666
Q ss_pred HHHHHHHhccCCCCCc
Q 043580 610 ERAAKSLAGLQPSHGP 625 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~ 625 (665)
.+-+.+-.+.+|++|-
T Consensus 153 q~d~~~fYQ~D~~DPf 168 (297)
T COG4785 153 QDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHhcCCCChH
Confidence 6666666666666653
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.4 Score=38.92 Aligned_cols=58 Identities=5% Similarity=-0.139 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++...|++-++++.-...+...|++..+|+.-+++....=+.++|..-+.++++..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445566777777777777777777777777777777777777777777777766543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.34 E-value=8 Score=31.61 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=28.8
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK 587 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (665)
.++.+++..+++.+. -+.| ....-..-...+...|+|++|..+++++...
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566666666666665 4455 2333333344555666777777777666533
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.54 Score=28.64 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++..|+.+|...|++++|.++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 466788888888888888888888866
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=12 Score=32.32 Aligned_cols=117 Identities=9% Similarity=0.000 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCCCChHHH--HHHHHHhcccChHHHHHHHHHHhHhhcCCCCCh----hHHHHHhhHhhhcCChHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITF--IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDL----KHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 578 (665)
+.....+++...+-....-++ ..+...+...+++++|...++..... ..|. .+--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444455555553211111122 23445677889999999999987743 2222 22234667778899999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 579 EVIRSMPMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 579 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+++....+. .......-+..+...|+-++|...|+++++..++.+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9998876442 233344456778999999999999999998875543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.99 E-value=1 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
...+.-++.+.|++++|....+.+++.+|++..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667889999999999999999999999887533
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.6 Score=25.99 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
|..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.83 E-value=3.2 Score=35.10 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+|+.-|++.. .+.| ...++.++..+|...+.+. |+.. .....+++|...|+++.+
T Consensus 53 dAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~------------~d~~---------~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 53 DAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLT------------PDTA---------EAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhc------------CChH---------HHHHHHHHHHHHHHHHHh
Confidence 3444444444 4577 4577777777776544211 1110 011125677777778888
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 619 LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 619 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+|++..+...|-.. ++|-++..++...
T Consensus 109 ~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 109 EDPNNELYRKSLEMA-------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHH-------HTHHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHH-------HhhHHHHHHHHHH
Confidence 888877765555332 2455555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.8 Score=37.24 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
.+..+..-|++.|+.+.|.+.|.++.+. ...| -...+-.++......+++..+...+.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444445555555555555555554433 2233 1233334444444445555544444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.90 E-value=13 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCC
Q 043580 394 YAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 394 ~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+++.+..++|+.-|..+.+.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~ 89 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGY 89 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCC
Confidence 3456677777777777776653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.6 Score=43.81 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCc--hhHHHHHHHHHhc-cCCHHHHHHHHhhccC--CCc---ccHHHHHHHHHhcCCHHHHHHHHhhC
Q 043580 176 MLHGLVIKLMIDGF--VIISTNLLNMYCV-CSSLVEARSLFDEMKE--RNI---VSWNVMLNGFAKAGLVELARELFERI 247 (665)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~--~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (665)
.....|...|.+-. ...+..+...|.+ .|+..+|........- ++. ...-++...+-+.|...+|.-++...
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 34445555554332 3334455555555 5777777766655442 211 23344555566777777776666554
Q ss_pred CCC-Ce--eeHHHHHHHHhhcCChhHHHHHHHHHHHCC
Q 043580 248 PSK-DV--VSWGTMIDGYLQVERLSEALTMYRAMLCDG 282 (665)
Q Consensus 248 ~~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 282 (665)
... +. ..+-.+..+++..+.+...+..|....+.|
T Consensus 276 ~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 276 LDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred ccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 431 11 124455666667777777777777666543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.74 E-value=1 Score=33.50 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChh
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 641 (665)
|......+...+...|+++.|++.+-.+++.+|+. ......|..++...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55666677777777788888887777777776654 555667777777777643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.65 E-value=22 Score=33.54 Aligned_cols=121 Identities=8% Similarity=0.059 Sum_probs=59.8
Q ss_pred hCCCchHHHHHHHHHHHCC--CCCChhH-----HHHHHHHHHccC-cHHHHHHHHHHHHHc--------CCCCCh-----
Q 043580 396 QNEQPNMALELFHGMVDAG--VKPNEIT-----MVSVFCAIASSG-TLKEGRWAHEYVLNN--------SITLND----- 454 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~--~~p~~~~-----~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~----- 454 (665)
+.|+.+.|..++.+..... ..|+... +-.+.......+ +++.|...+++..+. ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4567777777776655432 2222211 111122223334 666666555554332 112222
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 043580 455 NLSAAIIDMYAKCGSIN---TAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKR 516 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 516 (665)
.++..++.+|...+..+ +|..+++.+....|+ +.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445556666555443 344455555444333 344445555555566777777777777664
|
It is also involved in sporulation []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.61 E-value=18 Score=38.11 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 043580 537 LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA---GQLEDAEEVIRSMPMKADVVIWGTLLAASR----IHGNVEVG 609 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A 609 (665)
+.+.|..++.+..+. | .|+.. ..+..++... .+...|.++|..+...-.......+..+|. ...+.+.|
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 556677777766543 2 22222 2233333322 356677777777664444444444443332 23367888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHhCCCccC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
..+++++.+.. ++.+...++.. +.. ++++.+.-.+..+.+.|.+..
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 88888887776 33333333333 333 777777777777766665443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.61 E-value=3.3 Score=36.89 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHHhccC--CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 043580 591 VIWGTLLAASRIHGNVEV-------GERAAKSLAGLQ--PSH----GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKR 657 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 657 (665)
..+..+.|.|...|+.+. |...|+++.+.. |.. ....+.+|.++.+.|++++|.+.+.++...+-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 445556666666666444 444445554332 222 3557789999999999999999999998865443
Q ss_pred C
Q 043580 658 L 658 (665)
Q Consensus 658 ~ 658 (665)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=23 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG 496 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 496 (665)
.+.+++..|.. +|...+..+....+|..+-...+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 44445555553 3555555554433444444433333
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.4 Score=42.58 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=56.6
Q ss_pred hcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
..|+...|...+..+. .+| .......|.....+.|..-.|-.++.+.+.+....|.+++.+|.+|....+.++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 3567777777666654 333 2334455666666666667777777777777766677777777777777777777777
Q ss_pred HHHHHhCCC
Q 043580 647 RKEMRDCGM 655 (665)
Q Consensus 647 ~~~~~~~~~ 655 (665)
++.++++..
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 777766544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.91 E-value=39 Score=35.63 Aligned_cols=274 Identities=9% Similarity=0.004 Sum_probs=148.2
Q ss_pred HHHHHHHhhcCCC-CcchHHHHHHH-----HHhCCCchHHHHHHHHHHH-------CCCCCChhHHHHHHHHHHccC---
Q 043580 370 EDARQLFNNMQKR-DVYSWSAMISG-----YAQNEQPNMALELFHGMVD-------AGVKPNEITMVSVFCAIASSG--- 433 (665)
Q Consensus 370 ~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~--- 433 (665)
..|.+.++...+. ++..-..+..+ +....+++.|+.+|+.+.+ .|.+ .....+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCc
Confidence 3455555555433 33332222222 2344567777777777766 4422 23334444454432
Q ss_pred --cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHchhCCCCcchHHHHHHHHH----hcCChHHH
Q 043580 434 --TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK-CGSINTAFEVFYHIRDRTTSVSPWNAIICGLA----MHGDANLT 506 (665)
Q Consensus 434 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a 506 (665)
+.+.|..++....+.|.+.. ..+...+..... -.+...|.+.|......+.... +-.+..+|. ...+...|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDA-QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA-IYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchH-HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCcCCCHHHH
Confidence 55667777777777663332 222112211122 2356778888887776533332 222333322 23477888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH---hhh----cCChHHHHH
Q 043580 507 LKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL---LGR----AGQLEDAEE 579 (665)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~~A~~ 579 (665)
..++++..+.| .|...--...+..+.. ++++.+.-.+..+... +..-....-..+... ... ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888887 4443333333344444 6666666555555543 322211111111111 111 235667777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-C--ChhHHHHHHHHHHh
Q 043580 580 VIRSMPMKADVVIWGTLLAASRIH----GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-G--RWEDAFSIRKEMRD 652 (665)
Q Consensus 580 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 652 (665)
.+.+....-+......+..+|..- .+.+.|...+.++.+.. ......|+..+-.- | +...|..++.++.+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777776666666667777665543 36888999998887766 66677777665322 1 26888888888876
Q ss_pred CC
Q 043580 653 CG 654 (665)
Q Consensus 653 ~~ 654 (665)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 44
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.91 E-value=4 Score=35.31 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=54.6
Q ss_pred HhhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCh
Q 043580 567 LLGRAGQLEDAEEVIRSMPMKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRW 640 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 640 (665)
.+.+.|+ ++|.+.|-.+...| +....-..+..|....|.++++.++.+++++.+.+ +..+..|+.+|.+.|++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445555 67777777776443 33333444455666888999999999998876544 56688999999999999
Q ss_pred hHHH
Q 043580 641 EDAF 644 (665)
Q Consensus 641 ~~A~ 644 (665)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=3 Score=38.55 Aligned_cols=61 Identities=23% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+.+-.+|.+.++++.|..+.+.++.+.|+++.-+.-.|.+|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455566777777777777777777777777776667777777777777777777666554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.27 E-value=48 Score=35.95 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=92.3
Q ss_pred HhcCCHHHHHHHHHHchhC------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH-----HHhc
Q 043580 465 AKCGSINTAFEVFYHIRDR------TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL-----STCC 533 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-----~~~~ 533 (665)
...|+++.|.++.+..... .+....+..+..+..-.|++++|..+..+..+..-.-+...+.... ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3457778877777665554 2334556677777778888888888877665542222333222221 2234
Q ss_pred ccChH--HHHHHHHHHhHhhcC-CCC----ChhHHHHHhhHhhhcCChHHHHHHHHhC----C-CCCCH----HHHHHHH
Q 043580 534 HAGLV--DLGERYFKSMKSVYN-VEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSM----P-MKADV----VIWGTLL 597 (665)
Q Consensus 534 ~~~~~--~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~----~~~~~l~ 597 (665)
..|+. .+....|......+. -.| -..++..+..++.+ ++.+..-.... . ..|.+ ..+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 45532 233333333332211 112 12334444444444 33333322222 1 11221 1223566
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCC-Cch-H---HHHHHH-H-HhcCChhHHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSH-GPS-R---VLLSNI-Y-ADAGRWEDAFSIRKE 649 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~-~---~~l~~~-~-~~~g~~~~A~~~~~~ 649 (665)
......|+.++|...+.++..+..+. +.. | ..++++ | ...|+.++|...+.+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 77788999999999988886543333 222 1 122222 2 345787777776654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.05 E-value=1.2 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888888888888888864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.91 E-value=46 Score=35.40 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHhh
Q 043580 193 STNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS-KDVVSWGTMIDGYLQ 264 (665)
Q Consensus 193 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 264 (665)
....|..+...|++++|-...-.|...+...|...+..+...++......++-.-+. -+...|..++..+..
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 344566666777777777777777776666666666666666665555444433332 245567777777665
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.78 E-value=2.4 Score=36.89 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHhhHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSM-PMKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
+.-+..+.+.+.+.+|+...+.- +.+| +...-..+...++-.|+.++|..=++-+-++.|+...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 33445566777777777766543 3455 4455556666777778888887777777777777554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.64 E-value=29 Score=32.86 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcc--c----ChHHHHHHHHHHhHhhcCCCC--ChhHHHHHhhHhhhcCChH
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCH--A----GLVDLGERYFKSMKSVYNVEP--DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 575 (665)
++.+.+++.|.+.|+.-+..+|.+....... . ....+|..+|+.|++.+.+-. +-.++..|+-. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677888888888777666553332222 2 234567888888887633222 23333333222 333333
Q ss_pred ----HHHHHHHhCC---C-CCCHHHHHHHHHHHHh-cCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh-HH
Q 043580 576 ----DAEEVIRSMP---M-KADVVIWGTLLAASRI-HGN--VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE-DA 643 (665)
Q Consensus 576 ----~A~~~~~~~~---~-~~~~~~~~~l~~~~~~-~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 643 (665)
.++.+++.+. . +.+..-+.+-+-++.. ..+ ..++..+++.+.+-.-.-...++-...+++-.++.+ +.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 3333444433 2 2233233222223222 212 346666777665544333333333333455444444 66
Q ss_pred HHHHHHHHhCCCccCCCccc
Q 043580 644 FSIRKEMRDCGMKRLPGFSG 663 (665)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~ 663 (665)
.+.+.++.+. +++.+++.|
T Consensus 237 ~~~i~ev~~~-L~~~k~~~~ 255 (297)
T PF13170_consen 237 VEEIKEVIDE-LKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHH-HhhCcccCh
Confidence 6666666442 445555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.41 E-value=13 Score=37.94 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERY 544 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 544 (665)
.+.|+++.|.++..+. .+..-|..|..+..+.++...|.+.+.+..+ |..|+-.+...|+.+....+
T Consensus 648 l~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 3445555555444333 2233455555555555555555555554433 33344444444544433333
Q ss_pred HHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 545 FKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
-....+. |. -|. -..+|...|+++++.+++.+-
T Consensus 715 a~~~~~~-g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQ-GK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhh-cc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 3333332 21 111 122344556666666655544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.37 E-value=7 Score=36.20 Aligned_cols=102 Identities=11% Similarity=0.085 Sum_probs=67.9
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.|.+.+..+...++..-....+++++...+-+++.. .++... ...++.+ -.-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 344444445555555555567777777777766654 122111 1222222 234677888888888888999999
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
++++.++..+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988888877666543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.20 E-value=28 Score=32.25 Aligned_cols=66 Identities=6% Similarity=-0.050 Sum_probs=42.2
Q ss_pred CCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHH-hcCCchhHHHHHHHHHhccCCHHHHHHHHhh
Q 043580 150 GVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKL-MIDGFVIISTNLLNMYCVCSSLVEARSLFDE 215 (665)
Q Consensus 150 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 215 (665)
|-.++..+...++..++..+++..-.++++..... +...|...|...|+.....|+..-..++.++
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34556666666666666667776666666666555 4556666666677777777766666555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.02 E-value=5 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
-++.+-+..+....+.|++......+++|.+.+++..|.++|+.++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 345555666667778888888888889998899999999988888754 2224445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.68 E-value=55 Score=35.06 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 043580 257 TMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRA 300 (665)
Q Consensus 257 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (665)
.+|-.+.+.|++++|.++.++.... .......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5667778888888888888555433 455556667777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.52 E-value=24 Score=31.06 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMV 565 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 565 (665)
.+..++.+.+.+...+++...++-++.+ +-|..+-..+++.+|-.|++++|..-++... .+.|+ ..+|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445667777888888888887777763 4466677788888899999999988887776 33552 45566665
Q ss_pred hHhhhcCChHHHHH-HHHhCC-----CCCCHHHHHHHHHHHH-hc-CCHHHHHHHHHHHhccCCCCC
Q 043580 566 DLLGRAGQLEDAEE-VIRSMP-----MKADVVIWGTLLAASR-IH-GNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 566 ~~~~~~g~~~~A~~-~~~~~~-----~~~~~~~~~~l~~~~~-~~-g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+ +.+.. +|.--. ..|.+.-...+..+.. +. |.-+.+..+-+++.+.-|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 54 22222 222211 1133333334444432 33 345556666677777666543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.38 E-value=6.8 Score=38.48 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=89.0
Q ss_pred HHHHHHhcCChHHHHHHHHH-HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc
Q 043580 493 IICGLAMHGDANLTLKIYSD-LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA 571 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (665)
-|.--...|+...|-+-+.. +....-.|+...+... .....|+++.+...+...... +.....+..+++......
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhch
Confidence 34445567887777654444 4443334554444333 456789999999988887742 334567788888888899
Q ss_pred CChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 572 GQLEDAEEVIRSMPMK--ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 572 g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
|++++|..+-+.|... .++.............|-++++....++++.++|....-+.
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 9999999998888622 34444444444456677889999999999988876554443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.05 E-value=36 Score=32.36 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc-----C--ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 043580 537 LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA-----G--QLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGN 605 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 605 (665)
+..+|..+|++..+. |..+.......+...|... - +...|...+.++...-+......+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666554 4333222233333333332 1 223566666665433344555555544432 236
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCCc
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG---------------RWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 656 (665)
.++|...|+++-+... ......++ .+...| +...|...+......|..
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7777777777777665 55555665 455444 666777777776665543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.51 E-value=3.1 Score=31.33 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC---------chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG---------PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..+.||+..|.+.+.+..+...... .....++.++...|++++|.+.++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577888888888877765433222 22456777888999999999999998763
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.32 E-value=12 Score=27.95 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=33.0
Q ss_pred HHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHH
Q 043580 98 GYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLAS 160 (665)
Q Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 160 (665)
.+..+|++++|..+.+....||...|-.|-. .+.|-.+.+..-+.+|..+| .|...+|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3445566666666666665555555544433 34455566666666666665 444444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.28 E-value=64 Score=34.65 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHhccCCCC---Cch-H-----HHHHHHHHhcCChhHHHHHHHHHH
Q 043580 603 HGNVEVGERAAKSLAGLQPSH---GPS-R-----VLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~---~~~-~-----~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
.|+..+.......+..+-... ... | ..+...|...|+.++|.+...+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 788777666666665433322 322 3 345556888999999999887764
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.19 E-value=0.78 Score=42.71 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV-VIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|.++.|++.|...+ .+.| ....|..-..++.+.+++..|+.-+.... .+||. ..|-.-..+....|+.++|.
T Consensus 126 n~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3455555555555555 2344 34444444555555555555555444433 22221 12222233334445555555
Q ss_pred HHHHHHhccC
Q 043580 611 RAAKSLAGLQ 620 (665)
Q Consensus 611 ~~~~~~~~~~ 620 (665)
..++.+.+++
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 5555554433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.15 E-value=4.9 Score=30.15 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
+..+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3445556666677788888888888888888888888888888887523 33336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.1 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..+..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999988764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=53 Score=33.08 Aligned_cols=163 Identities=6% Similarity=0.003 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGL 497 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 497 (665)
|.....+++..+.......-.+.+-.++...| -+...+..++.+|... ..+.-..+|+++.+..-+......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444455555555555555555555555433 2333444555555555 44455555555544322222222222222
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLN-----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
...++.+.+...|.+....=++.. ...|.-+...- ..+.+....+...+....|...-...+.-+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 222555555555555544321110 01233332211 23455555555555554344444455555556666667
Q ss_pred ChHHHHHHHHhCC
Q 043580 573 QLEDAEEVIRSMP 585 (665)
Q Consensus 573 ~~~~A~~~~~~~~ 585 (665)
++++|++++....
T Consensus 220 N~~eai~Ilk~il 232 (711)
T COG1747 220 NWTEAIRILKHIL 232 (711)
T ss_pred CHHHHHHHHHHHh
Confidence 7777777776554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.3 Score=37.22 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=31.3
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 569 GRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+.++.+.|.+++.+.. ..| ....|-.+...-.+.|+++.|.+.+++.++++|.+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34555555666655554 212 4455555555555666666666666666666655543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.59 E-value=11 Score=30.16 Aligned_cols=72 Identities=8% Similarity=0.002 Sum_probs=48.2
Q ss_pred CCChhHHHHHhhHhhhcCC---hHHHHHHHHhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 555 EPDLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPM--KA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.++..+--.+..++.+..+ ..+.+.+++++.. .| .......|.-++.+.++++.+.++.+.+++.+|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4555666666777766554 4455566666542 23 33445556667888888888888888888888887764
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.59 E-value=8.3 Score=30.80 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 587 KADVVIWGTLLAASRIHGN---VEVGERAAKSLAG-LQPSHG-PSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++..+--.+.+++.++.+ ..+.+.+++.+.+ -.|... ...+.|+-.+.+.++|++++++.+.+++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4666777788888887764 6778888998886 445443 4466788889999999999999999988654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.07 E-value=5.9 Score=36.63 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred HHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 043580 343 LQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-D-----VYSWSAMISGYAQNEQPNMALELFHGMVDAGVK 416 (665)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 416 (665)
+-|..|......+...++..-....+++.++..+-.+... + ..+-.+.+..+.+ -++++++.++..=+.-|+-
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence 3445555555555556666656667777777777666532 1 1122233333332 3677888888888888999
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNN 448 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (665)
||..++..++..+.+.+++.+|..+.-.+...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.01 E-value=37 Score=30.30 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=31.3
Q ss_pred hhcCChHHHHHHHHhCC---CCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 569 GRAGQLEDAEEVIRSMP---MKADVVIW------GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~---~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
...+++.+|+.+|++.. ...+..-| -.-+-++...+|.-.+...+++..+++|.-..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34566777777766653 11111111 112222333467777777777777888876555
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.86 E-value=77 Score=33.86 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 571 AGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
.++.++|+++.++ ..|...|..|+..+...-.+-.++
T Consensus 674 l~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 674 LRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred hhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 3444444444433 367888888887776655444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.63 E-value=41 Score=30.58 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH---CCC--CCChhHHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCChh
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVD---AGV--KPNEITMVSVFCAIASSGTLKEGRWAHEYVLN-----NSITLNDN 455 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 455 (665)
+...++..+.+.+++++.++.|.+|.. ..+ .-+....+.++.-.+...+.+....+++.-.+ .+-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 334456666666666666666665542 111 12233445555544444444433333332221 11111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC-----CC-C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR-----TT-S-------VSPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLN 521 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~ 521 (665)
+-+.|...|...|.+.+..++++++... +. | ...|..-|..|...++-.+...++++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 2345666777777777777777766554 11 1 1246666777777777777777777665432 2233
Q ss_pred hHHHHHHHHHh-----cccChHHHHHHHHHHhHhhcCC--CCC---hhHHHHHhhHhhhcC
Q 043580 522 SITFIGVLSTC-----CHAGLVDLGERYFKSMKSVYNV--EPD---LKHYGCMVDLLGRAG 572 (665)
Q Consensus 522 ~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g 572 (665)
+... .++.-| .+.|.+++|..-|-+..+.+.- .|. ..-|-.|++.+.+.|
T Consensus 227 PlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 227 PLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3333 233333 3467777766544433332111 231 122445556665554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.24 E-value=14 Score=33.72 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
+..-..+.+++++|+..+.++...|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 44455666777777777777777776666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.84 E-value=14 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 043580 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA 316 (665)
Q Consensus 267 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 316 (665)
+.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466777778877889999999999999999999999999999877743
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.83 E-value=65 Score=32.30 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=25.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchh
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFG 304 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 304 (665)
++.++..+++++.+...|.......++.....+.+.|...
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 5566777777777776666555555666666666655443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.60 E-value=1.2 Score=43.71 Aligned_cols=100 Identities=7% Similarity=0.030 Sum_probs=71.0
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCCC-hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEPD-LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g 604 (665)
-+..+...+.++.|..++.+++ .+.|| ...|..-..++.+.+++..|+.=+.++. ..|. ...|..=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556677788899999999888 55884 5555555677888888888887666654 3343 233444445666777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
.+.+|...|++...+.|+++.+...+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 88888888888888999888764444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.35 E-value=11 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 043580 589 DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A 609 (665)
++..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.31 E-value=2.8 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=8.4
Q ss_pred HhhHhhhcCChHHHHHHH
Q 043580 564 MVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~ 581 (665)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444444444444444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.30 E-value=36 Score=30.94 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLP 659 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 659 (665)
.-+++.+.++..+.++..++.+--+++..-+.++.-+.+-.++++.++.+..
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 4444555555555555555555555555555555555555555555544443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.01 E-value=90 Score=33.46 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHhcCChhhHHHhhhcCC---CCCcccHHHHHHHHhhc
Q 043580 94 IMISGYIRNDRLNDAREVFDKTP---IKCCVSYTSMIMGFAQN 133 (665)
Q Consensus 94 ~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 133 (665)
++|--+.|+|++++|.++..+.. ......+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 35666778888888888883332 23334566666666654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 64/396 (16%), Positives = 122/396 (30%), Gaps = 120/396 (30%)
Query: 16 NLQNSDYELALVSALRYCS-AHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLI 74
LQ L + S + + + +IHS+ ++ L +++ Y C L+
Sbjct: 201 MLQK----LLYQIDPNWTSRSDHSSNIKLRIHSI--QAEL--RRLLKS---KPYENCLLV 249
Query: 75 ------SQAKSMFD-SCSTL----DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSY 123
++A + F+ SC L + + + + L+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------- 300
Query: 124 TSMIMGFAQNDCWREALEVFRDMRILGV----IPNEVT----LA-SVISSSVHLG-GIWE 173
E + + L +P EV S+I+ S+ G W+
Sbjct: 301 -------------DEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 174 CRMLHGLVIKL--MIDGFVIISTNLLNMYCVCSSLVEARSLFDEM----KERNI------ 221
H KL +I+ + N+L E R +FD + +I
Sbjct: 346 -NWKHVNCDKLTTIIESSL----NVLEPA-------EYRKMFDRLSVFPPSAHIPTILLS 393
Query: 222 VSWN--------VMLNGFAKAGLVEL-ARELFERIPSKDVVSWGTMIDGYLQVE------ 266
+ W V++N K LVE +E IP YL+++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------SIYLELKVKLENE 442
Query: 267 -----RLSEALTMYRAMLCDGIAPN--DVMIVDLISACGRAMAFGEGLQIHSIIVKAGFD 319
+ + + + D + P D I G + E + ++ D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLD 499
Query: 320 CYDFIQATIIHF-YAACGRINLARLQFELGI-KDHI 353
+ F++ I H A ++ +L K +I
Sbjct: 500 -FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 86/682 (12%), Positives = 187/682 (27%), Gaps = 238/682 (34%)
Query: 3 LDHFHSVFNSQKANLQNSDYELAL-----VSALRYCSAHIAVSQGQQIHSLIFKSGLESN 57
D V + K+ L + + + VS +S+ +++ + L N
Sbjct: 33 FD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRIN 90
Query: 58 -TFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTP 116
F+ + + + S M+ DRL + +VF K
Sbjct: 91 YKFLMSPI---KTEQRQPSMMTRMYIEQ-----------------RDRLYNDNQVFAKYN 130
Query: 117 IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRM 176
VS + R+AL R + + +
Sbjct: 131 ----VSRLQPYLKL------RQALLELRPAKNVLI------------------------- 155
Query: 177 LHGLVIKLMIDGFVIISTNLLNMYCVC--SSLVEARSLFDEMKERNI---VSWNVMLNGF 231
G ++ G + + + + + W + N
Sbjct: 156 -DG-----VL-G--------------SGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 232 AKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIV 291
+ ++E+ ++L +I + L++ + L R +L N ++++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVL 250
Query: 292 DLISACGRAMAFGEGLQIHSIIVKAGFD--C-----------YDFIQA------TIIHFY 332
+ ++ A F+ C DF+ A ++ H
Sbjct: 251 LNVQ--------------NAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 333 A-------------------------ACGRINLARLQFELGIKDHIASWN---------- 357
I+D +A+W+
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 358 -ALIAGFIRNGMIEDARQLFNNMQ--------KRDVYS--WSAMISGYAQNEQPNMALEL 406
+I + + R++F+ + + S W +I + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----SDVMVVVNK 410
Query: 407 FH--GMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN-SITL---NDNLSAAI 460
H +V+ K + I++ S++ + L+ H ++++ +I +D+L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLEL--KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 461 IDMYAKCGSINTAFEVF--YHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLE---- 514
+D Y F +H++ + L ++ D
Sbjct: 469 LDQY---------FYSHIGHHLK--------------NIEHPERMTLFRMVFLDFRFLEQ 505
Query: 515 K-RNIKLNSITFIGVLSTCCHAGLVDLG-------------ERYFKSMKS-VYNVEPDLK 559
K R+ +L+T L L ER ++ + +E +L
Sbjct: 506 KIRHDSTAWNASGSILNT-----LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 560 HYGCMVDLLGRAGQLEDAEEVI 581
DLL A L +E I
Sbjct: 561 CSKYT-DLLRIA--LMAEDEAI 579
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 2e-08
Identities = 10/104 (9%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 341 ARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKR-------DVYSWSAMISG 393
+ + + A + + A L + + ++A++ G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 394 YAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKE 437
+A+ + + + DAG+ P+ ++ + +
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 4e-07
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 7/190 (3%)
Query: 401 NMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAI 460
MA L A P E + + +L + ++ A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 461 IDMYAKCGSINTAFEVFYHIRDRTT-----SVSPWNAIICGLAMHGDANLTLKIYSDLEK 515
+ A + + ++ +NA++ G A G + + ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 516 RNIKLNSITFIGVLSTCCHAG-LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL 574
+ + +++ L ER + M L ++ RA L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVL 252
Query: 575 EDAEEVIRSM 584
+ +V +
Sbjct: 253 KAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 11/137 (8%), Positives = 33/137 (24%), Gaps = 8/137 (5%)
Query: 218 ERNIVSWNVMLNGFAKAGLVELARELFERIPSK-------DVVSWGTMIDGYLQVERLSE 270
+ LA L + + + ++ G+ + E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 271 ALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQ-IHSIIVKAGFDCYDFIQATII 329
+ + + G+ P+ + + GR ++ + + G A ++
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 330 HFYAACGRINLARLQFE 346
+
Sbjct: 244 SEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 17/172 (9%), Positives = 45/172 (26%), Gaps = 24/172 (13%)
Query: 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQ 61
S +E L L+ +++ Q ++ L
Sbjct: 71 LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL 130
Query: 62 NSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLNDAREVFDKTPIKCCV 121
+ + A + L K +
Sbjct: 131 LAFFKCCLLTDQLPLAHHL------------------------LVVHHGQRQKRKLLTLD 166
Query: 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWE 173
Y ++++G+A+ ++E + V ++ G+ P+ ++ A+ +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 6e-06
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 327 TIIHFYAACGRINLA-------RLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNM 379
++ LA Q + + +NA++ G+ R G ++ + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 380 QKR----DVYSWSAMISGYAQNEQPNMALE-LFHGMVDAGVKPNEITMVSVFC 427
+ D+ S++A + + +Q +E M G+K + +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 17/248 (6%), Positives = 54/248 (21%), Gaps = 17/248 (6%)
Query: 136 WREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWE-CRMLHGLVIKLMIDGFVIIST 194
+ + L + + + +L + + +
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 195 --NLLNMYCVCSSLVEARSLFDEMKER----NIVSWNVMLNGFAKAG-LVELARELFERI 247
++ + + E + +K+ +++S+ L + E++
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 248 PSKDVVSWGTMIDGYLQVERLSEALTMYRAML----CDGIAPNDVMIVDLISACGRAMAF 303
+ + L E + L + P V L+
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 304 GEGLQIHSIIVKAGFDCYDFIQA-----TIIHFYAACGRINLARLQFELGIKDHIASWNA 358
++H + + + + +K W
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEK 347
Query: 359 LIAGFIRN 366
+ +R
Sbjct: 348 ALCRALRE 355
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 665 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.18 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.87 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.83 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.23 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.16 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.63 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.49 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.35 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.11 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.32 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.68 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.78 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.99 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.19 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.94 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.8 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.35 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.68 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.53 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.82 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.55 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.36 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.77 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.36 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.23 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 83.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.51 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.62 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.66 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.58 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.17 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=342.21 Aligned_cols=501 Identities=10% Similarity=-0.027 Sum_probs=307.8
Q ss_pred HHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHH
Q 043580 99 YIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLH 178 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 178 (665)
..+.|.+..+...+..++.++...|+.++..|.+.|++++|..+|++|.+ ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777777777777777888889999999999999999999998885 4677788888888888888888888888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Q 043580 179 GLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTM 258 (665)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 258 (665)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.++. +.-...+..+|+.+
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHH
Confidence 77653 3567778888888888888888888888754322200 0000000000 00112346788888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcccchhhHHH--H-HHHHHHhCCCCchhHHHHHHHHHHh
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPN-DVMIVDLISACGRAMAFGEGLQ--I-HSIIVKAGFDCYDFIQATIIHFYAA 334 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (665)
+.+|.+.|++++|+++|++|.+. .|+ ...+..+...+...+..+.+.. + +..+...+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------- 267 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED----------------- 267 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-----------------
Confidence 99999999999999999998874 343 3444444443333222211110 0 11221111
Q ss_pred cCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 335 CGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
..+...+|+.++..|.+.|++++|.++|+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+
T Consensus 268 --------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 268 --------------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp --------------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 122223444455555666666666666666654 4566666666666666666666666666665
Q ss_pred CCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHH
Q 043580 413 AGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWN 491 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 491 (665)
.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++... +.+..+|+
T Consensus 334 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 334 ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 43 2345566666666666666666666666666432 334556666666677777777777777666554 33455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhh
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGR 570 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 570 (665)
.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .| ++.+|..++.+|.+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHH
Confidence 77777777777777777777766653 445666666777777777777777777776643 34 56667777777777
Q ss_pred cCChHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 571 AGQLEDAEEVIRSMP-------MKAD--VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.|++++|.++++++. ..|+ ..+|..++.+|.+.|++++|...+++++++.|+++..+..++.+|...|+++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 777777777766663 2454 5666777777777777777777777777777776666777777777777777
Q ss_pred HHHHHHHHHHhCC
Q 043580 642 DAFSIRKEMRDCG 654 (665)
Q Consensus 642 ~A~~~~~~~~~~~ 654 (665)
+|.+.++++++..
T Consensus 568 ~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 568 LAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=339.84 Aligned_cols=466 Identities=9% Similarity=0.012 Sum_probs=361.8
Q ss_pred hhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHH
Q 043580 131 AQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEAR 210 (665)
Q Consensus 131 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 210 (665)
...|.+..+...+..+. .++...|+.++..+.+.|++++|..+++.+... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555555443 357889999999999999999999999999854 457788889999999999999999
Q ss_pred HHHhhcc--CCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHH
Q 043580 211 SLFDEMK--ERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDV 288 (665)
Q Consensus 211 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 288 (665)
++|+.+. .++..+++.++.+|.+.|++++|.++|+++...+.. ..++.+.++ ...|.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLM-----------QDGGIKLEAS 201 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccccc-----------cccccchhHH
Confidence 9999984 577888999999999999999999999864433211 111111111 1235667888
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCC
Q 043580 289 MIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGM 368 (665)
Q Consensus 289 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (665)
++..++..+.+.|++++|...|+++.+.+. .+...+..+...+...+..+.+.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~-------------------------- 254 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDL-------------------------- 254 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHH--------------------------
Confidence 999999999999999999999999988752 23333333333222221111110
Q ss_pred HHHHHHH-HhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 369 IEDARQL-FNNMQKR----DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 369 ~~~a~~~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
+..+ +..+... ...+|+.++..|.+.|++++|.++|+++.+. +++..++..++..+.+.|++++|..+++
T Consensus 255 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 255 ---VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp ---HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0000 1112111 2345666788888999999999999998875 5889999999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.+.+.+ +.+..++..++.++.+.|++++|..+++.+... +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+.
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 330 KILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 999876 346788999999999999999999999999876 4567799999999999999999999999999864 4567
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
.+|..++.+|.+.|++++|.++|+++.+. .| +..+|..++.+|.+.|++++|.++++++. .+.++.+|..++..
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARL---FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 89999999999999999999999999853 56 88999999999999999999999999986 44578999999999
Q ss_pred HHhcCCHHHHHHHHHHHhcc------CCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGL------QPSH-GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|.+.|++++|...++++++. +|+. ...+..++.+|.+.|++++|.+.++++.+.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999887 5554 56789999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-26 Score=229.56 Aligned_cols=372 Identities=11% Similarity=0.110 Sum_probs=256.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGR 337 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 337 (665)
...+.+.|++++|.+.++++.+. .| +...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455666666666666666553 23 33344444445556666666666666665543 3445556666666666666
Q ss_pred hHHHHHHHHhcc--CC-chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 043580 338 INLARLQFELGI--KD-HIASWNALIAGFIRNGMIEDARQLFNNMQK--R-DVYSWSAMISGYAQNEQPNMALELFHGMV 411 (665)
Q Consensus 338 ~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 411 (665)
+++|...|++.+ .| +..+|..+..++.+.|++++|.+.|+.+.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666665432 22 334566666677777777777777766542 2 34456667777777788888888887777
Q ss_pred HCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchH
Q 043580 412 DAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPW 490 (665)
Q Consensus 412 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 490 (665)
+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++.....| +..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 642 2345667777777777888888888887777654 23345667777788888888888888877766634 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 491 NAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 491 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
..+...+...|++++|...++++.+.+ +.+..++..+...+.+.|++++|.+.|+++.+. .| +..++..++.++.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHH
Confidence 778888888888888888888887753 335667778888888888888888888888754 45 6777888888888
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 570 RAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
..|++++|...++++. ..| +..++..++.++.+.|++++|...++++++++|+.+..+..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888775 223 567778888888888888888888888888888888888888887776653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-26 Score=226.84 Aligned_cols=353 Identities=12% Similarity=0.108 Sum_probs=310.2
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHH
Q 043580 294 ISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIE 370 (665)
Q Consensus 294 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 370 (665)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|+++.|...++..+ +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445677899999999999998875 4455677788889999999999999987544 456778999999999999999
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHccCcHHHHHHHHHHHH
Q 043580 371 DARQLFNNMQK--R-DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE-ITMVSVFCAIASSGTLKEGRWAHEYVL 446 (665)
Q Consensus 371 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 446 (665)
+|...|+.+.+ | +...|..+..++.+.|++++|...|+++.+. .|+. ..+..+...+...|++++|...++.+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998753 3 5567999999999999999999999999985 4554 456667788889999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 043580 447 NNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITF 525 (665)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 525 (665)
+.. +.+...+..+...+...|++++|...|+++....| +...|..+...+...|++++|...+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 864 33467888999999999999999999999988744 46688899999999999999999999999864 4467889
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRI 602 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 602 (665)
..+...+...|++++|.+.|+++.+ ..| ++.++..++.++.+.|++++|.+.++++. .+.+..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999985 467 68899999999999999999999999986 45688999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 603 HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++++..
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=235.98 Aligned_cols=185 Identities=9% Similarity=0.133 Sum_probs=165.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCc---------HHHHHHHHHHHHHcCCCCChh
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGT---------LKEGRWAHEYVLNNSITLNDN 455 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 455 (665)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. .+.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788889999999999999999999999999999999999999886553 678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
+|+++|.+|++.|++++|.++|++|... .|+..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999876 78889999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR 570 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (665)
+.|+.++|.++|++|.+. +..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 999999999999999988 999999999998888765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=235.49 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=168.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCC---------hHHHHHHHHHHHHHhcCCchh
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGG---------IWECRMLHGLVIKLMIDGFVI 191 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 191 (665)
..++.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHH
Q 043580 192 ISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEA 271 (665)
Q Consensus 192 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 271 (665)
+|++||.+|++.|++++|.++|++|.+.+ ..||..+|++||.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCHHHH
Confidence 99999999999999999999999887543 346688899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 043580 272 LTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAAC 335 (665)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (665)
.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+++.++..++..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999888888888888877654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=218.72 Aligned_cols=424 Identities=11% Similarity=-0.006 Sum_probs=292.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccc
Q 043580 224 WNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAM 301 (665)
Q Consensus 224 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 301 (665)
+......+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+...|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666666543 555566666666666666666666666666532 223455666666666666
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH---h-ccCCchhhHHHH---HHHHHhcCCHHHHHH
Q 043580 302 AFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFE---L-GIKDHIASWNAL---IAGFIRNGMIEDARQ 374 (665)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~-~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 374 (665)
++++|...++.+.+.+. ++.......+..+........+.+.+. . ...|+...+..- ............+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 66666666666665542 222222222222222222222211110 0 000000000000 000000111111111
Q ss_pred HHhhcCC---------C-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCC--------ChhHHHHHHHH
Q 043580 375 LFNNMQK---------R-DVYSWSAMISGYAQ---NEQPNMALELFHGMVD-----AGVKP--------NEITMVSVFCA 428 (665)
Q Consensus 375 ~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~ 428 (665)
.+..... + +...+......+.. .|++++|+..|+++.+ ....| +...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222111 1 13344444554554 8999999999999887 32222 23466777888
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTL 507 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 507 (665)
+...|++++|...++.+.+.... ...+..+..++...|++++|...++++... +.+...+..+...+...|++++|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999887644 778888999999999999999999998887 446778899999999999999999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 508 KIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..++++.+.. +.+...+..+...+...|++++|...++++.+. .| +..++..++.+|...|++++|...++++.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999864 446788999999999999999999999999864 56 67889999999999999999999998875
Q ss_pred ---CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 586 ---MKAD----VVIWGTLLAASRI---HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 586 ---~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+. ...|..++.++.. .|++++|...++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 1122 3488899999999 99999999999999999999999999999999999999999999999988654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-23 Score=212.84 Aligned_cols=446 Identities=10% Similarity=0.004 Sum_probs=299.7
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHh
Q 043580 122 SYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYC 201 (665)
Q Consensus 122 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (665)
.+......+.+.|++++|...|+++.+.+ |+..+|..+..++...|+++.|...++.+++.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45566777888889999999999988865 688888888888888899999988888888775 345567777888888
Q ss_pred ccCCHHHHHHHHhhccCC---CcccHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHhhcCChhHHHHH
Q 043580 202 VCSSLVEARSLFDEMKER---NIVSWNVMLNGFAKAGLVELARELFERIPS----KDVVSWGTMIDGYLQVERLSEALTM 274 (665)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 274 (665)
..|++++|...|+.+.+. +......++..+........+.+.+..+.. ++...+..-.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------- 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK--------------- 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh---------------
Confidence 888888888888777642 222222222222222111111111111110 0000000000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchh
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIA 354 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (665)
.........|+.......+..+........ ...+.+..
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~ 187 (514)
T 2gw1_A 150 -ERKDKQENLPSVTSMASFFGIFKPELTFAN-----------------------------------------YDESNEAD 187 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSS-----------------------------------------CCSSCHHH
T ss_pred -HHHhhccCCchhHHHHHHHhhcCHHHHHHH-----------------------------------------hcCCcHHH
Confidence 000000112222211111111110000000 00011122
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 043580 355 SWNALIAGFIR---NGMIEDARQLFNNMQK----------------R-DVYSWSAMISGYAQNEQPNMALELFHGMVDAG 414 (665)
Q Consensus 355 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 414 (665)
.+......+.. .|++++|...|+.+.+ + +...+..+...+...|++++|+..++++.+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 23333333332 5556666665555433 1 34467778888888888888888888888754
Q ss_pred CCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHH
Q 043580 415 VKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAI 493 (665)
Q Consensus 415 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l 493 (665)
|+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++... +.+...+..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 336777778888888888888888888887654 334567788889999999999999999998877 4456788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLG 569 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~ 569 (665)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.|+ ...+..++.++.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864 456788899999999999999999999998864222222 338889999999
Q ss_pred h---cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 570 R---AGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 570 ~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
. .|++++|...++++. .+.+...+..+..++...|++++|...+++++++.|+++..+..+.
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9 999999999999875 3346788899999999999999999999999999999888766553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=210.48 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=309.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043580 222 VSWNVMLNGFAKAGLVELARELFERIPS---KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACG 298 (665)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (665)
..+..+...+.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4566777778888888888888887753 356778888888888888888888888887742 335667777777888
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCC------chhhHHHHHHHHHhcCCHHHH
Q 043580 299 RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKD------HIASWNALIAGFIRNGMIEDA 372 (665)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a 372 (665)
..|++++|...++ .... .|+ .....+..+...+....+...++..+.. ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 8888888888885 3222 121 1122233444455556677776654331 111223444555666677777
Q ss_pred HHHHhhcCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHHccC
Q 043580 373 RQLFNNMQKRDVY---SWSAMISGYAQN--------EQPNMALELFHGMVDAGVKPNE--------ITMVSVFCAIASSG 433 (665)
Q Consensus 373 ~~~~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~ 433 (665)
...+......+.. ....+...+... |++++|+.+++++.+. .|+. ..+..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 6666665554433 333333333322 4788999999998874 3442 24566667788889
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSD 512 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 512 (665)
++++|...++.+.+.. |+...+..+...+...|++++|...++++... +.+..++..+...+...|++++|...+++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999998865 44777888999999999999999999998876 44567889999999999999999999999
Q ss_pred HHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----C
Q 043580 513 LEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----K 587 (665)
Q Consensus 513 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 587 (665)
+.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|...++++.. .
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99864 446778899999999999999999999999865 56 678899999999999999999999988751 1
Q ss_pred ----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 588 ----ADVVIWGTLLAASRIH----------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 588 ----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.....+.....++... |++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223345556677777 99999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 043580 654 GM 655 (665)
Q Consensus 654 ~~ 655 (665)
..
T Consensus 492 ~~ 493 (537)
T 3fp2_A 492 AR 493 (537)
T ss_dssp C-
T ss_pred CC
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-22 Score=201.37 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=245.3
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHh
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIR 365 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 365 (665)
+...+..+...+.+.|++++|...++.+.+.. + .+...+..+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p-------------------------------~~~~~~~~l~~~~~~ 72 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-P-------------------------------DNYIAYYRRATVFLA 72 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C-------------------------------ccHHHHHHHHHHHHH
Confidence 34455555555566666666666666555542 2 234444555555555
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh----hHHHHH------------H
Q 043580 366 NGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNE----ITMVSV------------F 426 (665)
Q Consensus 366 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l 426 (665)
.|++++|...|+.+.+ .+..++..+..+|.+.|++++|...|+++.+. .|+. ..+..+ .
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555432 24556666667777777777777777776663 3332 233222 4
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHH
Q 043580 427 CAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
..+...|++++|...++.+.+.. +.+...+..++.+|.+.|++++|...|+++... +.+..+|..+...+...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44777888899998888887754 345677888899999999999999999988876 5567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHH------------HHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHh
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGV------------LSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLL 568 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 568 (665)
|+..++++.... +.+...+..+ ...+...|++++|..+|+++.+. .|+ ...+..++.++
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 999999998753 3344444444 78899999999999999999864 564 45788899999
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH------------HH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN------------IY 634 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~ 634 (665)
.+.|++++|...++++. .+.+...|..++.+|...|++++|...++++++++|+++..+..++. .|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999975 34478999999999999999999999999999999999999999984 45
Q ss_pred HhcC-----ChhHHHHHHHH-HHhCCCccCC
Q 043580 635 ADAG-----RWEDAFSIRKE-MRDCGMKRLP 659 (665)
Q Consensus 635 ~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 659 (665)
...| +.+++++.|++ .+.....+.+
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 5556 66788888886 5555444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=198.02 Aligned_cols=440 Identities=10% Similarity=0.018 Sum_probs=283.3
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 043580 121 VSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMY 200 (665)
Q Consensus 121 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (665)
..|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|+++.|...++.+.+.. +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777777653 2355677777777777777777777777777665 33556666677777
Q ss_pred hccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeeeHHHHHHHHhhcCChhHHHHH
Q 043580 201 CVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSK------DVVSWGTMIDGYLQVERLSEALTM 274 (665)
Q Consensus 201 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 274 (665)
...|++++|.+.|+.+. .+.......+..+...+..++|...++.+... ........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 77777777777775332 22112222233334444445555555554331 112233334444444444444433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHh-hcc-cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCc
Q 043580 275 YRAMLCDGIAPNDVMIVDLISAC-GRA-MAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDH 352 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 352 (665)
+..... ..+....+...+... ... +++..
T Consensus 183 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------------------------- 213 (537)
T 3fp2_A 183 VNTSSN--YDTAYALLSDALQRLYSATDEGYLV----------------------------------------------- 213 (537)
T ss_dssp SCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHH-----------------------------------------------
T ss_pred Hhhccc--cccHHHHHHHHHHHHHHhhhhhhHH-----------------------------------------------
Confidence 322211 122211111111111 100 00000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCCCC----------cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHH
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQKRD----------VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
..|++++|..+++.+.+.+ ..++..+...+...|++++|...++++.+. .|+...+
T Consensus 214 ------------a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 279 (537)
T 3fp2_A 214 ------------ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSY 279 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHH
Confidence 0122333333333333221 113455666777788888888888888874 4556777
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcC
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHG 501 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 501 (665)
..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|...++++... +.+...+..+...+...|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 778888888888888888888887764 335667888889999999999999999988876 445678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhc------
Q 043580 502 DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRA------ 571 (665)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~------ 571 (665)
++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+...-.+ ....+..+..++...
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999999874 55677888999999999999999999999876411111 122344556777777
Q ss_pred ----CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 572 ----GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 572 ----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
|++++|...++++. .+.+...+..+..++...|++++|...+++++++.|+.+....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999986 3446788999999999999999999999999999999877543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-21 Score=196.58 Aligned_cols=298 Identities=11% Similarity=0.075 Sum_probs=255.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCA 428 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 428 (665)
+...+..+...+.+.|++++|..+|+.+.+ .+...+..+..++...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 455677888888899999999999987653 367889999999999999999999999999864 4456788889999
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCCHHHHHHHHHHchhC-CCCcchHHH
Q 043580 429 IASSGTLKEGRWAHEYVLNNSITLND---NLSAAI------------IDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNA 492 (665)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 492 (665)
+...|++++|...++.+.+... .+. ..+..+ ...+...|++++|...|+++... +.+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999987542 222 344434 45589999999999999999887 446778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHH-------
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCM------- 564 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l------- 564 (665)
+..+|...|++++|..+++++.+.. +.+..++..+...|...|++++|...|+++... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 567889999999999999999999999999854 67 45555555
Q ss_pred -----hhHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 565 -----VDLLGRAGQLEDAEEVIRSMP-MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 565 -----~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+..+.+.|++++|...++++. ..|+ ...+..++.++.+.|++++|+..+++++++.|+++..+..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 889999999999999999986 3344 44788889999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCC
Q 043580 634 YADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 634 ~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|...|++++|.+.++++++...
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 9999999999999999988643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-17 Score=176.73 Aligned_cols=540 Identities=11% Similarity=0.063 Sum_probs=354.3
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHHhcCChh
Q 043580 27 VSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYIRNDRLN 106 (665)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 106 (665)
..|+.-+-+.+++.....+++.-+..| ..++.++|+|...|..+++-.+. ...-|..-=..++.-||..+++.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~------fL~~n~~yd~~~vgkyce~rDp~ 915 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER------FLRENPYYDSRVVGKYCEKRDPH 915 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH------HhhccCcccHHHHHHHHHhcCcc
Confidence 345555566667777778888888888 77888999999999877654431 12223333345566778777777
Q ss_pred hHHHhhhcCCCCCcccHHHHHHHHhhcCChHHH-HHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHh
Q 043580 107 DAREVFDKTPIKCCVSYTSMIMGFAQNDCWREA-LEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLM 185 (665)
Q Consensus 107 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 185 (665)
-|.-.+++ ...-.-||....+++-+..- .-++++ -|...|..++. .+-+.-+++.++.....
T Consensus 916 la~iay~~-----g~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~-----~~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 916 LACVAYER-----GQCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLL-----ESNPYRRPLIDQVVQTA 978 (1630)
T ss_pred hHHHHhcc-----cCCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhc-----CCcHHHHHHHHHHHHhh
Confidence 77666654 22334455555555554432 222222 14555655542 12233344555544444
Q ss_pred c--CCchhHHHHHHHHHhccCCHHHHHHHHhhccC-CC-----cccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Q 043580 186 I--DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE-RN-----IVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGT 257 (665)
Q Consensus 186 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (665)
+ ..++.-....+++|...|.+.+|+++++.+.- ++ ...-+.++.+..+. +..+..+..++...-+ ...
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~e 1054 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APD 1054 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHH
Confidence 2 22344445667788888888888888887773 22 23445566666555 4455555555554322 444
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 043580 258 MIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGR 337 (665)
Q Consensus 258 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 337 (665)
+...+...|.+++|..+|++.. -.......++. ..+++++|.++.+.. .++.++..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 6777778888888888888752 12222233332 566788888777654 346777888888888888
Q ss_pred hHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 043580 338 INLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+++|...|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+. .
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 88888888765 6667777888888888888888888876543 23444556888888888777533332 2
Q ss_pred CCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHH
Q 043580 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIIC 495 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 495 (665)
.|+...+..+...|...|++++|..+|..+ ..|..+..+|.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF 1258 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHH
Confidence 456666777888888888888888888875 35778888888888888888888877 34577888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc--C
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA--G 572 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g 572 (665)
+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++... ++.| ....|.-|..+|.+. +
T Consensus 1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHH
Confidence 88888888877775543 34455666778888888888888888887777 5566 566776676666653 4
Q ss_pred ChHHHHHHHHhCC-CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CCCCCchHHHHHHH
Q 043580 573 QLEDAEEVIRSMP-MK------ADVVIWGTLLAASRIHGNVEVGERAAKSLAGL------------QPSHGPSRVLLSNI 633 (665)
Q Consensus 573 ~~~~A~~~~~~~~-~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~ 633 (665)
+..++.++|..-. .+ -+...|..+...|.+.|+++.|....-+-... .+.++..++..+..
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 6666666665443 22 24567888888888888888888444333222 45666667766666
Q ss_pred HHhcC
Q 043580 634 YADAG 638 (665)
Q Consensus 634 ~~~~g 638 (665)
|....
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 66555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-16 Score=167.63 Aligned_cols=536 Identities=10% Similarity=0.065 Sum_probs=333.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCC-C-----CcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhc
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCST-L-----DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQN 133 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 133 (665)
--...+.+|..+|...+|.++++++.- + +....+.++..-.+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 345677788888888888888888762 2 223455555555554 3344444444443222 44466777788
Q ss_pred CChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHH
Q 043580 134 DCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLF 213 (665)
Q Consensus 134 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 213 (665)
|.+++|..+|++... .....+.++. ..+++++|.++.+.. .+..+|..+..++...|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888888888521 1222233322 567788887777754 34677888888888888888888888
Q ss_pred hhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 043580 214 DEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIV 291 (665)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 291 (665)
... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++..... . .|+...+.
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 654 5566777888888888888888888876543 33344455888888888877543332 1 34556666
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHH
Q 043580 292 DLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIED 371 (665)
Q Consensus 292 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (665)
.+...|...|+++.|..+|... ..|..++..+.+.|+++.|.+.+++. .+..+|..+..+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHH
Confidence 7888888888888888888774 47788888888888888888888766 455788888888888888888
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 043580 372 ARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS--SGTLKEGRWAHEYVLNNS 449 (665)
Q Consensus 372 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 449 (665)
|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|+-+...+++ .++..+..+.|..- .+
T Consensus 1269 A~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--in 1344 (1630)
T 1xi4_A 1269 AQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VN 1344 (1630)
T ss_pred HHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence 8887765 33355667788888999999999999997776533 2223344444444443 34444444444322 22
Q ss_pred CC------CChhHHHHHHHHHHhcCCHHHHHHH-------------HHHchhCCCCcchHHHHHHHHHhcC---------
Q 043580 450 IT------LNDNLSAAIIDMYAKCGSINTAFEV-------------FYHIRDRTTSVSPWNAIICGLAMHG--------- 501 (665)
Q Consensus 450 ~~------~~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~--------- 501 (665)
++ -+...|..++..|.+.|+++.|... |........++..|...+..|...+
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~ 1424 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM 1424 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHH
Confidence 22 2446677888889999999888732 2333333455566666666665555
Q ss_pred ------ChHHHHHHHHHHHHcC----------CCCChHHHHHHHHHhcccChHHHHHHHHHHhHh------hcCCCC-Ch
Q 043580 502 ------DANLTLKIYSDLEKRN----------IKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS------VYNVEP-DL 558 (665)
Q Consensus 502 ------~~~~a~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~p-~~ 558 (665)
|++++.+++.+.-... ...+...=..+...+....+++.-..-.+.... ...+.- ..
T Consensus 1425 ~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheL 1504 (1630)
T 1xi4_A 1425 VLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHEL 1504 (1630)
T ss_pred HhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhH
Confidence 6666666655211000 011111111222233333332211111111000 000011 11
Q ss_pred hHHHHHhh-HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 559 KHYGCMVD-LLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 559 ~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.-+..++. +|.+.|+|..|.+++++... |...+.+..++|+.+.+++++.-..+. ++...+......|...
T Consensus 1505 l~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l 1576 (1630)
T 1xi4_A 1505 IEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDL 1576 (1630)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhcc
Confidence 12233443 44455999999999988763 556678888999999998888888776 4555555444455555
Q ss_pred CChhHHHH
Q 043580 638 GRWEDAFS 645 (665)
Q Consensus 638 g~~~~A~~ 645 (665)
=+++-+++
T Consensus 1577 ~~pd~vle 1584 (1630)
T 1xi4_A 1577 LRPDVVLE 1584 (1630)
T ss_pred CCchHHHH
Confidence 55555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-19 Score=175.45 Aligned_cols=303 Identities=11% Similarity=0.029 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcc---CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHh
Q 043580 323 FIQATIIHFYAACGRINLARLQFELGI---KDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQ 396 (665)
Q Consensus 323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 396 (665)
..+..+...+...|+++.|...++..+ +.+...+..+...+...|++++|...++...+ .+...+..+...+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 345555666666666666666665432 22344555555666666666666666655432 234455555666666
Q ss_pred CCCchHHHHHHHHHHHCCCCC---C-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKP---N-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
.|++++|...|+++.+. .| + ...+..+.... . ...+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 66666666666665553 23 1 11111110000 0 0001112455666666666
Q ss_pred HHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...++++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666554 3344556666666666666666666666666543 345556666666666666666666666666643
Q ss_pred cCCCC-ChhHHH------------HHhhHhhhcCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 043580 552 YNVEP-DLKHYG------------CMVDLLGRAGQLEDAEEVIRSMP-MKAD-V----VIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 552 ~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
.| +...+. .++..+.+.|++++|...++++. ..|+ . ..+..+..++...|++++|...
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 ---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 34 233222 22455666677777777666654 2222 2 2233455666667777777777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 777777677666666777777777777777777776666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-18 Score=170.72 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=245.4
Q ss_pred CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcc--CC-chhhHHHHHHH
Q 043580 286 NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGI--KD-HIASWNALIAG 362 (665)
Q Consensus 286 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~ 362 (665)
|...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+++.|...+++.+ .| +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45667788888999999999999999999875 4567788899999999999999999998754 23 56788999999
Q ss_pred HHhcCCHHHHHHHHhhcCCCCc---c---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHH
Q 043580 363 FIRNGMIEDARQLFNNMQKRDV---Y---SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLK 436 (665)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 436 (665)
+...|++++|...|+...+.++ . .+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998865544 2 2322211000 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+|...++.+.+.. +.+...+..+..++...|++++|...++++... +.+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 234456667777778888888888888877776 44566777888888888888888888888877
Q ss_pred cCCCCChHHHH------------HHHHHhcccChHHHHHHHHHHhHhhcCCCCC-h----hHHHHHhhHhhhcCChHHHH
Q 043580 516 RNIKLNSITFI------------GVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-L----KHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 516 ~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~ 578 (665)
.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 53 33333332 2366688899999999999999865 453 3 33556888999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
..++++. .+.+...|..++.++...|++++|...++++++++|+++..+..|+.++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999986 33478899999999999999999999999999999999998888877765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=169.87 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=199.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHH
Q 043580 350 KDHIASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVF 426 (665)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 426 (665)
+.+...+..+...+...|++++|.++|+.+.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777777777888888887777643 244566667777777788888888887777643 33455666666
Q ss_pred HHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCcchHHHHHHHHHhcCChH
Q 043580 427 CAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRT-TSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 427 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 504 (665)
..+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777777777776643 2334566677777777778888877777777653 33556666777777777788
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC-------CCCChhHHHHHhhHhhhcCChHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-------VEPDLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 577 (665)
+|...+++..+.. +.+...+..+...+...|++++|...++++.+... ...+..++..++.+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8877777777653 44566777777777777777777777777765311 012456777777777777777777
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCh
Q 043580 578 EEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY-ADAGRW 640 (665)
Q Consensus 578 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 640 (665)
...++++. .+.+...|..+..++...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77777764 2335667777777777777777788777777777777777777777776 444543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=168.45 Aligned_cols=267 Identities=12% Similarity=0.032 Sum_probs=230.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 043580 382 RDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAII 461 (665)
Q Consensus 382 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (665)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467788888889999999999999999998764 3445566677788899999999999999998864 34567788889
Q ss_pred HHHHhcC-CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 462 DMYAKCG-SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 462 ~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
..+...| ++++|...|+++... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 999999999999887 4456789999999999999999999999999874 445677888999999999999
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHH
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM-----------KADVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~ 607 (665)
+|.+.++++. ...| +...+..++.++...|++++|...++++.. +.....+..++.++...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 4467 788899999999999999999999988751 234678899999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 608 VGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|...+++++++.|+++..+..++.+|...|++++|.+.++++++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=172.77 Aligned_cols=283 Identities=12% Similarity=-0.044 Sum_probs=221.6
Q ss_pred hcCCHHHHHH-HHhhcCCC-------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHH
Q 043580 365 RNGMIEDARQ-LFNNMQKR-------DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLK 436 (665)
Q Consensus 365 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 436 (665)
..|++++|.. .++..... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 66644321 34567778888888888888888888888753 345667777788888888888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc-chHHH---------------HHHHHHhc
Q 043580 437 EGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV-SPWNA---------------IICGLAMH 500 (665)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~---------------l~~~~~~~ 500 (665)
+|...++.+.+.. +.+...+..+..+|...|++++|...++++....|+. ..+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888888887765 3456777888888888999999999888888764432 22221 23334488
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 501 GDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .| +..++..++.+|...|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999864221 5788999999999999999999999999864 67 6889999999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCChhHHHH
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-----------GPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
..++++. .+.+...+..++.++.+.|++++|...+++++++.|++ ...+..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999986 34568899999999999999999999999999999888 6789999999999999999999
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 9875544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-17 Score=154.46 Aligned_cols=398 Identities=12% Similarity=0.115 Sum_probs=178.0
Q ss_pred hcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhccCChHHHHHHHHH
Q 043580 101 RNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHLGGIWECRMLHGL 180 (665)
Q Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 180 (665)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445666666666666443 36666777777777777777777542 4666777777777777777777776666
Q ss_pred HHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Q 043580 181 VIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMID 260 (665)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 260 (665)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6553 3345666777778888888877776665 366678888888888888888888888876 47888888
Q ss_pred HHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 043580 261 GYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINL 340 (665)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 340 (665)
++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 888888888888888887 2678888888888888888888554332 33444556678888999999999
Q ss_pred HHHHHHhccCCc---hhhHHHHHHHHHh--cCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhCCCchHHHHHH
Q 043580 341 ARLQFELGIKDH---IASWNALIAGFIR--NGMIEDARQLFNNMQK--------RDVYSWSAMISGYAQNEQPNMALELF 407 (665)
Q Consensus 341 a~~~~~~~~~~~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (665)
|..+++.++..+ ...|+-|.-.|++ -+++.+.++.|..-.. .+...|..+...|...++++.|..+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t- 304 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT- 304 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH-
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-
Confidence 999998876544 3455656555554 3455666666654321 2677899999999999999988875
Q ss_pred HHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc
Q 043580 408 HGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV 487 (665)
Q Consensus 408 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 487 (665)
|.++ +|+...-..+.....+..+.+--.+.....+.. .+...+.|+.++...=+...+..+|++.... |-+
T Consensus 305 --m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l-~l~ 375 (449)
T 1b89_A 305 --MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL-PLV 375 (449)
T ss_dssp --HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCT-TTT
T ss_pred --HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCc-HHH
Confidence 4443 344444444444555555544333333333321 2233555666666666666666666555442 222
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHH
Q 043580 488 SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 488 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
..|-.-+ +..+...+-+.+.++.-. .-|..++..-+.+|..-+....|.+
T Consensus 376 ~~yl~~v----~~~n~~~vnealn~l~ie--eed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 376 KPYLRSV----QNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHHH----HTTCCHHHHHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHHH----HHhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 2222111 122333333333333211 3455556666666666665555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-16 Score=160.28 Aligned_cols=352 Identities=8% Similarity=0.019 Sum_probs=242.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC
Q 043580 265 VERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR----AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CG 336 (665)
Q Consensus 265 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 336 (665)
.+++++|+..|+...+.| +...+..+-..+.. .+++++|...++...+.| +......+...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444555555555444432 22333333333433 445555555555544433 33334444444444 44
Q ss_pred ChHHHHHHHHhccCC-chhhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHh----CCCchHHHHH
Q 043580 337 RINLARLQFELGIKD-HIASWNALIAGFIR----NGMIEDARQLFNNMQK-RDVYSWSAMISGYAQ----NEQPNMALEL 406 (665)
Q Consensus 337 ~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 406 (665)
+++.|...+++.... ++..+..+...|.. .+++++|.+.|+...+ .++..+..+...|.. .+++++|+.+
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 555555555443322 33445555555555 5667777777766543 356677777777776 7888888888
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHH
Q 043580 407 FHGMVDAGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFY 478 (665)
Q Consensus 407 ~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 478 (665)
|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88887754 44556666666654 678888888888887654 34455566667766 889999999999
Q ss_pred HchhCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC---hHHHHHHHHHHhHh
Q 043580 479 HIRDRTTSVSPWNAIICGLAMH-----GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG---LVDLGERYFKSMKS 550 (665)
Q Consensus 479 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 550 (665)
+..+. .++..+..+...|... +++++|+.++++..+.| +...+..+...|...| ++++|.++|++..+
T Consensus 284 ~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 284 KSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88765 4566777788888877 89999999999999865 4456677777776655 88999999999886
Q ss_pred hcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC
Q 043580 551 VYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 551 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 622 (665)
. .++..+..|..+|.. .+++++|.+.+++.....++..+..+...|.. .++.++|...++++.+..|+
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4 467788889999988 89999999999998766678889999999988 89999999999999999854
Q ss_pred ---CCchHHHHHHHHHh
Q 043580 623 ---HGPSRVLLSNIYAD 636 (665)
Q Consensus 623 ---~~~~~~~l~~~~~~ 636 (665)
++.....|+.++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 67767777766554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-16 Score=158.15 Aligned_cols=363 Identities=11% Similarity=0.017 Sum_probs=300.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHH
Q 043580 271 ALTMYRAMLCDGIAPNDVMIVDLISACGR----AMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAA----CGRINLAR 342 (665)
Q Consensus 271 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 342 (665)
++..++...+.| +...+..+-..+.. .++++.|...++...+.| +...+..+...|.. .++.+.|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455555555543 55666666666666 789999999999998875 56778888899998 89999999
Q ss_pred HHHHhccCC-chhhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHH
Q 043580 343 LQFELGIKD-HIASWNALIAGFIR----NGMIEDARQLFNNMQKR-DVYSWSAMISGYAQ----NEQPNMALELFHGMVD 412 (665)
Q Consensus 343 ~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 412 (665)
..+++.... ++..+..|...|.. .+++++|...|+...+. ++..+..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999876543 56677788888888 88999999999987654 67788888888887 7899999999999998
Q ss_pred CCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHchhCC
Q 043580 413 AGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFYHIRDRT 484 (665)
Q Consensus 413 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 484 (665)
.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++....
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~- 252 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ- 252 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence 75 56677777777777 899999999999998875 45566777778876 88999999999998875
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc-----ChHHHHHHHHHHhHhhcCCC
Q 043580 485 TSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA-----GLVDLGERYFKSMKSVYNVE 555 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 555 (665)
.+...+..+...|.. .+++++|++++++..+.| +...+..+...|... +++++|..+|++..+.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---- 325 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---- 325 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----
Confidence 456677778888877 899999999999998865 455667777777776 8999999999999864
Q ss_pred CChhHHHHHhhHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 556 PDLKHYGCMVDLLGRAG---QLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 556 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
-+...+..+..+|...| ++++|++.+++.....++..+..+...|.. .+++++|...++++.+.. ++..+.
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 25567888888888766 889999999998766788999999999998 899999999999998864 578899
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 629 LLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 629 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
.|+.+|.. .+++++|.+.|+++.+.|.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998 8999999999999998774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=162.47 Aligned_cols=263 Identities=8% Similarity=-0.095 Sum_probs=206.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455566666777777777777777776643 2345566666677777777777777777776653 3345666777778
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC-cchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDRTTS-VSPWNAI--------------IC-GLAMHGDANLTLKIYSDLEKRNIKLNSITFIG 527 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 527 (665)
+...|++++|...++++....|+ ...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 88888888888888887776333 3333333 22 3677889999999999999875 557788999
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 604 (665)
+...+...|++++|.+.++++.+. .| +..++..++.++...|++++|...++++. .+.+...+..+..++...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 56 68889999999999999999999999975 3346888999999999999
Q ss_pred CHHHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPS------------HGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
++++|...++++++..|+ .+..+..++.+|...|++++|.++++++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999 678899999999999999999999876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-18 Score=166.23 Aligned_cols=261 Identities=11% Similarity=-0.045 Sum_probs=203.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456777777777777777777777777653 3355667777777777778888887777777654 334567777888
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCC-c----------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHHHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTS-V----------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL--NSITFIGVL 529 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 529 (665)
+|...|++++|...++++....|+ . ..+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 888888888888888887765332 1 223345788889999999999999999874 22 678899999
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 606 (665)
..+...|++++|...|+++.+. .| +..++..++.+|...|++++|+..++++. .+.+...|..++.+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999864 66 78899999999999999999999999986 334688999999999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 607 EVGERAAKSLAGLQPS------------HGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
++|...+++++++.|+ ....+..|+.++...|+.+.|.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998887 356789999999999999999888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-15 Score=158.44 Aligned_cols=408 Identities=11% Similarity=0.045 Sum_probs=276.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043580 220 NIVSWNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISA 296 (665)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (665)
+...|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|+...+...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5567888887 4778999999999998875 4 4557888889999999999999999999874 4777766666643
Q ss_pred h-hcccchhhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhccC-Cch---hhH
Q 043580 297 C-GRAMAFGEGLQ----IHSIIVKA-GFDC-YDFIQATIIHFYAA---------CGRINLARLQFELGIK-DHI---ASW 356 (665)
Q Consensus 297 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 356 (665)
. ...|+.+.|.+ +|+..... |..+ +..++...+....+ .|+++.|..+|++.+. |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34567777665 66655543 4433 44566666665554 5677788888876554 221 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCh--------
Q 043580 357 NALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMV------DAG---VKPNE-------- 419 (665)
Q Consensus 357 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~-------- 419 (665)
..........|. ..+..++. .+.+++..|..+++.+. +.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 222111100110 01111111 01234555555555422 111 23331
Q ss_pred hHHHHHHHHHHc----cCcH----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 043580 420 ITMVSVFCAIAS----SGTL----KEGRWAHEYVLNNSITLNDNLSAAIIDMYAK-------CGSIN-------TAFEVF 477 (665)
Q Consensus 420 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 477 (665)
..+...+..... .++. +.+..+++.++... +.++..+..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 222222221111 1222 36667788877653 3456677777777765 68877 899999
Q ss_pred HHchh-C-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 478 YHIRD-R-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS--ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 478 ~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
++... . +.+...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--- 384 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--- 384 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 99986 4 445778999999999999999999999999985 5542 4788888888889999999999999985
Q ss_pred CCC-ChhHHHHHhhH-hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc----
Q 043580 554 VEP-DLKHYGCMVDL-LGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP---- 625 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 625 (665)
..| +...|...+.. +...|+.++|..+|++.. ..| ++..|..++..+.+.|+.++|..++++++...|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 345 34444433333 336899999999999876 234 6888999999999999999999999999998877665
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.+...+......|+.+.+.++.+++++.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57677778888899999999999987743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=163.28 Aligned_cols=370 Identities=10% Similarity=-0.069 Sum_probs=204.6
Q ss_pred CeeeHHHHHHHHhhcCChhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHhhcccchhhHHHHHHHHHHhCC----
Q 043580 251 DVVSWGTMIDGYLQVERLSEALTMYRAMLCD-----G--IAP-NDVMIVDLISACGRAMAFGEGLQIHSIIVKAGF---- 318 (665)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 318 (665)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...+++..+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888999998888876531 1 122 345677777777777777777777766654210
Q ss_pred ---CCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHH
Q 043580 319 ---DCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQK--R-DVYSWSAMIS 392 (665)
Q Consensus 319 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 392 (665)
.....++.....++...| .+++++|...|++..+ | ++..+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~-----------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG-----------------------------GNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC-----------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc-----------------------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 011222222222222221 2234555555544331 1 3333333333
Q ss_pred H---HHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHH----ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 043580 393 G---YAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIA----SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYA 465 (665)
Q Consensus 393 ~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (665)
+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.++|.+.++...... +.+..++..+...|.
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 2 233455566666666665532 222333333333332 2345556666666665543 233445556666677
Q ss_pred hcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAM-------------------HGDANLTLKIYSDLEKRNIKLNSITF 525 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~p~~~~~ 525 (665)
..|++++|...+++.....|+ ..++..+..+|.. .+..+.|...+++..+.. +.+...+
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 777777777777666655333 3344444444322 223567778888877764 4456678
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCCChh----HHHHHhhH-hhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK----HYGCMVDL-LGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAA 599 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~ 599 (665)
..+...+...|++++|+..|++..+. .|+.. .+..+... +...|++++|+..+++.. ..|+...+.
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----- 409 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----- 409 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-----
Confidence 88888899999999999999988854 34322 23333332 346788999999888865 455433322
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCCcccc
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPGFSGV 664 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 664 (665)
+....+..+++++++.+|+++.++..||.+|...|++++|++.|+++++.|...+...+|+
T Consensus 410 ----~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ----KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234566778888899999999999999999999999999999999999998888888875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-16 Score=148.98 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=180.8
Q ss_pred hcCCHHHHHHHHhhcCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHH
Q 043580 365 RNGMIEDARQLFNNMQKRDV----YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRW 440 (665)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 440 (665)
..|++..|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444444333221 1223344555555555555544432 123344455555555555555555655
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043580 441 AHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK 519 (665)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 519 (665)
.++.+...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++++.+. .
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 555555544333 334455566778888888888888877 366778888888999999999999999999886 3
Q ss_pred CChHHH---HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHH
Q 043580 520 LNSITF---IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIW 593 (665)
Q Consensus 520 p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 593 (665)
|+.... ...+..+...|++++|..+|+++.+. .| ++..++.++.++.+.|++++|...++++. .+.++.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 554311 12334444568999999999999975 56 78899999999999999999999999976 33478899
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 594 GTLLAASRIHGNVEV-GERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
..++..+...|+.++ +..+++++++++|+++.+.. ...+.+.+++|..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999865 67899999999999887543 455566666665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=162.28 Aligned_cols=275 Identities=13% Similarity=0.055 Sum_probs=206.6
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHH-HHHHHHHCCC-CC--ChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 368 MIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALE-LFHGMVDAGV-KP--NEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
.++.+...|+.+...++. ++...|++++|+. .+++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443332 3345588999998 8876654321 11 34567788899999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS 522 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 522 (665)
.+.+.. +.+...+..+..++...|++++|...|+++... +.+..++..+...+...|++++|...++++.... +.+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 166 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYA 166 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTG
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Confidence 999864 445678888999999999999999999999887 4467789999999999999999999999999864 2233
Q ss_pred HHHHH---------------HHHHhcccChHHHHHHHHHHhHhhcCCCC---ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 523 ITFIG---------------VLSTCCHAGLVDLGERYFKSMKSVYNVEP---DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 523 ~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
..+.. .+..+...|++++|...++++.+. .| +..++..++.+|...|++++|...++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33221 233344889999999999999865 44 4788999999999999999999999998
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 585 P--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 585 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
. .+.+...|..++.++...|++++|+..+++++++.|+++..+..++.+|...|++++|.+.++++++..
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6 334688999999999999999999999999999999999999999999999999999999999998753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=160.06 Aligned_cols=234 Identities=11% Similarity=-0.012 Sum_probs=197.4
Q ss_pred ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHH
Q 043580 418 NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICG 496 (665)
Q Consensus 418 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 496 (665)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++... +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34558888899999999999999999998875 345788899999999999999999999999887 4457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----------hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLN-----------SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMV 565 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 565 (665)
|...|++++|...++++.+.. |+ ...+..+...+...|++++|..+++++.+...-.++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998853 32 12233457889999999999999999997611112588999999
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
.+|...|++++|++.++++. .+.+..+|..++.++...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999986 3457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 043580 644 FSIRKEMRDCG 654 (665)
Q Consensus 644 ~~~~~~~~~~~ 654 (665)
.+.++++++..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-15 Score=153.18 Aligned_cols=412 Identities=11% Similarity=0.038 Sum_probs=277.5
Q ss_pred CCchhHHHHHHHHHhccCCHHHHHHHHhhccC--C-CcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHH
Q 043580 187 DGFVIISTNLLNMYCVCSSLVEARSLFDEMKE--R-NIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDG 261 (665)
Q Consensus 187 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 261 (665)
+.+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|+++.. |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 335566666776 3667788888888887775 3 334677777888888888888888888765 566666666643
Q ss_pred H-hhcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHhCCCCchhHH
Q 043580 262 Y-LQVERLSEALT----MYRAMLCD-GIAP-NDVMIVDLISACGR---------AMAFGEGLQIHSIIVKAGFDCYDFIQ 325 (665)
Q Consensus 262 ~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 325 (665)
. ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..++.........+
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34677777665 77766543 5555 45566666665443 68899999999999883111112233
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhh-------cC------CCC--------c
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNN-------MQ------KRD--------V 384 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~--------~ 384 (665)
..........|. ..+..++. .+.+++..|..++.. +. .++ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322222111111 11111111 012334444443332 11 111 1
Q ss_pred chHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCChhHHHHHHHHHHc-------cCcHH-------HHHHHH
Q 043580 385 YSWSAMISGYAQN----EQP----NMALELFHGMVDAGVKPNEITMVSVFCAIAS-------SGTLK-------EGRWAH 442 (665)
Q Consensus 385 ~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~ 442 (665)
..|...+...... ++. ..+..+|++..... +-+...|......+.. .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2444444332222 232 36778898888752 3345566666666654 68876 888999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043580 443 EYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV--SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL 520 (665)
Q Consensus 443 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 520 (665)
+...+.-.+.+...+..++..+.+.|++++|..+|+++....|+. ..|..++..+.+.|+.++|..+|++..+.. +.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~ 388 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT 388 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 888763334457788889999999999999999999999886653 478888888999999999999999999853 22
Q ss_pred ChHHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC--CHHH
Q 043580 521 NSITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA--DVVI 592 (665)
Q Consensus 521 ~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~ 592 (665)
+...+...+.. +...|+.++|..+|++..+. .| ++..|..++..+.+.|+.++|..+|+++.. .| ....
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 34444333322 33589999999999999865 57 688999999999999999999999999862 22 2448
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
|...+......|+.+.+..+.+++.+..|+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 888888888999999999999999999885
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-16 Score=149.58 Aligned_cols=376 Identities=10% Similarity=0.062 Sum_probs=144.1
Q ss_pred ccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHC
Q 043580 202 VCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCD 281 (665)
Q Consensus 202 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 281 (665)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566666777776664443 6666777777777777777766543 44456666666676777777777755555442
Q ss_pred CCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHH
Q 043580 282 GIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIA 361 (665)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 361 (665)
.+++.+.+.++.+|.+.|+++++.++++ .|+...+..+...|...|.++.|...|... ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3445566666667777777666666553 244456666667777777777777666644 46777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHH
Q 043580 362 GFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWA 441 (665)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 441 (665)
++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777766 3666777777777777777777544332 222223344566677777777777777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHHHchhCC------CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 442 HEYVLNNSITLNDNLSAAIIDMYAKC--GSINTAFEVFYHIRDRT------TSVSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
++...... +-...+|+.+.-+|++- +++.+..+.|..-...+ .+...|..+.-.|...++++.|..+ |
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---M 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---H
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---H
Confidence 77665443 33445566555555543 23333444443222222 2455688888888888888877763 4
Q ss_pred HHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--------
Q 043580 514 EKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------- 585 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 585 (665)
.++ +|+......+.....+..+.+--.+...-.... .| ...+-|..++...=+...+.+++++..
T Consensus 306 ~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 306 MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 442 333222223333333333333222222222211 33 235555555555556666666665553
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 586 -----MKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 586 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
...+...=.++-..|....|++.-....
T Consensus 379 l~~v~~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 379 LRSVQNHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2223333334444556666665444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=152.88 Aligned_cols=249 Identities=10% Similarity=0.036 Sum_probs=204.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 043580 392 SGYAQNEQPNMALELFHGMVDAGVKPNE--ITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGS 469 (665)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (665)
......|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 445668999999999887644 34443 3445677899999999999876644 234566788889999999999
Q ss_pred HHHHHHHHHHchhC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 470 INTAFEVFYHIRDR--TT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 470 ~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
.++|.+.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998764 24 455677788999999999999999987 5677889999999999999999999999
Q ss_pred HhHhhcCCCCChhHH---HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 547 SMKSVYNVEPDLKHY---GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 547 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
++.+. .|+.... ..++..+...|++++|..+++++. .+.++..|+.++.++.+.|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99965 5753221 223344555699999999999986 456889999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 043580 622 SHGPSRVLLSNIYADAGRWED-AFSIRKEMRDCGM 655 (665)
Q Consensus 622 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 655 (665)
+++.++..++.++...|+.++ +.++++++++...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999976 5789999877543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=144.00 Aligned_cols=196 Identities=12% Similarity=0.013 Sum_probs=161.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 043580 451 TLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVL 529 (665)
Q Consensus 451 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 529 (665)
+++...+..+...+.+.|++++|...|++.... +.+...+..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667778888899999999999999998887 4556788889999999999999999999999864 44677888899
Q ss_pred HHhccc-----------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 043580 530 STCCHA-----------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGT 595 (665)
Q Consensus 530 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 595 (665)
..+... |++++|+..+++..+. .| +...+..+..+|...|++++|+..++++. . .++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 9999999999999954 78 78899999999999999999999999975 5 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-16 Score=143.61 Aligned_cols=219 Identities=9% Similarity=-0.038 Sum_probs=162.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----C----cchHHHH
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT----S----VSPWNAI 493 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~----~~~~~~l 493 (665)
+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+++.....| + ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444555555555555554444 4444555556666666666666666666554411 1 3567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+...|++++|...+++.... .|+. ..+...|++++|...++++.. ..| +...+..++.++...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 77888888888888888888774 4543 345566888999999998874 466 6778888999999999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 573 QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 573 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
++++|...++++. .+.+...|..++.++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998875 34467888899999999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 043580 651 RDCG 654 (665)
Q Consensus 651 ~~~~ 654 (665)
++..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-15 Score=150.20 Aligned_cols=380 Identities=9% Similarity=-0.014 Sum_probs=229.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHhhCCC-----------C-CeeeHHHHHHHHhhcCChhHHHHHHHHHHHC-----C-
Q 043580 221 IVSWNVMLNGFAKAGLVELARELFERIPS-----------K-DVVSWGTMIDGYLQVERLSEALTMYRAMLCD-----G- 282 (665)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g- 282 (665)
...|+.+...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+- +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45789999999999999999999987532 2 3568999999999999999999999987642 1
Q ss_pred CCC-CHHHHHHHHHHhh--cccchhhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhcc--CC-ch
Q 043580 283 IAP-NDVMIVDLISACG--RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHF---YAACGRINLARLQFELGI--KD-HI 353 (665)
Q Consensus 283 ~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~--~~-~~ 353 (665)
..+ ...++.....++. ..+++++|...|+...+.. +.++..+..+..+ +...++.+.|.+.+++.+ .| +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 111 3455555544444 3467999999999999875 3344444444444 345577777877776543 23 34
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHH
Q 043580 354 ASWNALIAGFIR----NGMIEDARQLFNNMQ---KRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSV 425 (665)
Q Consensus 354 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 425 (665)
..+..+...+.. .|++++|.+.++... ..+..++..+...|...|++++|+..+++..+. .|+ ...+..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 455555444443 456777888887654 335667778888888888888888888888774 344 3344444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH
Q 043580 426 FCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN 504 (665)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 504 (665)
..++...+.... ... . ..........+.++.|...+++.... +.+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 333322111000 000 0 00011111223467788888887776 455778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChH--HHHHHHH-HhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 505 LTLKIYSDLEKRNIKLNSI--TFIGVLS-TCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
+|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+....... ...+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHH
Confidence 9999999999865333221 2233322 2346799999999999988 457754332222 23334444
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 582 RSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 582 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
++.. .+.++.+|..++.++...|++++|+..|++++++.|..|.+...+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4433 3346789999999999999999999999999999999988766655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-15 Score=145.26 Aligned_cols=232 Identities=11% Similarity=0.005 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHH
Q 043580 419 EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGL 497 (665)
Q Consensus 419 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 497 (665)
...+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++... +.+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3456677788899999999999999998865 346677888999999999999999999999887 44567889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHH--------------HH-HhcccChHHHHHHHHHHhHhhcCCCC-ChhHH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGV--------------LS-TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHY 561 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 561 (665)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+. .| +..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 175 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM---NPNDAQLH 175 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH---STTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh---CCCCHHHH
Confidence 99999999999999999863 2233333333 33 478899999999999999865 56 78899
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
..++.+|...|++++|...++++. .+.+...|..++..+...|++++|...++++++..|+++..+..++.+|...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986 334688899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
+++|.+.++++++...
T Consensus 256 ~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999987543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=140.36 Aligned_cols=235 Identities=11% Similarity=-0.024 Sum_probs=191.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC----hhHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT--LN----DNLSA 458 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 458 (665)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356667777788888888888888887766 66777777888888888888888888887653321 12 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV 538 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 538 (665)
.+...+...|++++|...|++.....|+ ...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 8888999999999999999998886555 245666788999999999998853 33566788899999999999
Q ss_pred HHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 539 DLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 539 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
++|...++++.+. .| +..++..++.+|...|++++|...++++. .+.+...|..+..++...|++++|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999864 56 78889999999999999999999999886 344688899999999999999999999999
Q ss_pred HhccC------CCCCchHHHHHH
Q 043580 616 LAGLQ------PSHGPSRVLLSN 632 (665)
Q Consensus 616 ~~~~~------p~~~~~~~~l~~ 632 (665)
++++. |++...+..|..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 777766666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-15 Score=138.64 Aligned_cols=248 Identities=10% Similarity=-0.013 Sum_probs=170.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hhHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLN--DNLSAAIIDM 463 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 463 (665)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445566666777777777777766642 22333555666666677777777777776665321111 1236677777
Q ss_pred HHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
+...|++++|...|++.... +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877776 3455678888888888888888888888887752 345566666663444455888899
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCCHHH
Q 043580 543 RYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMP----MKAD------VVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 543 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~ 608 (665)
+.|+++.+. .| +...+..+..++...|+ +++|...++++. ..|+ ...|..+...+...|++++
T Consensus 163 ~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888888854 66 57777778888888787 777888777764 2233 2567778888899999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 609 GERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
|...++++++++|+++.++..++.+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999988887776655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-14 Score=143.48 Aligned_cols=342 Identities=10% Similarity=0.024 Sum_probs=184.3
Q ss_pred HhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHHhccCCchhhHHHHHHHHHhcC-----
Q 043580 296 ACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRI---NLARLQFELGIKDHIASWNALIAGFIRNG----- 367 (665)
Q Consensus 296 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 367 (665)
.+.+.|++++|.+.++...+.|. ...+..+...|...|+. ++|...|++....++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 33444555555555555555442 12222333334444554 56666666555445555555555444443
Q ss_pred CHHHHHHHHhhcCCC-CcchHHHHHHHHHhCCCch---HHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 368 MIEDARQLFNNMQKR-DVYSWSAMISGYAQNEQPN---MALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 368 ~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
++++|...|+...++ ++..+..+...|...+..+ .+.+.+......|. ......+...+...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 556677766665433 4556666666666654433 34444554444442 2334444555555554444333333
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCC-cchHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCG---SINTAFEVFYHIRDRTTS-VSPWNAIICGLAMH----GDANLTLKIYSDLEK 515 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 515 (665)
.+.+.-...++..+..+..+|...| +.++|.+.|++.....+. ...+..+...|... +++++|+.+|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3332222233336666777777777 777777777777665333 23335555555443 57777777777776
Q ss_pred cCCCCChHHHHHHHHH-h--cccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC-----ChHHHHHHHHhCCCC
Q 043580 516 RNIKLNSITFIGVLST-C--CHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG-----QLEDAEEVIRSMPMK 587 (665)
Q Consensus 516 ~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 587 (665)
.| +...+..+... + ...+++++|.++|++..+. | ++..+..|..+|. .| ++++|...|++.. .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 33444444444 2 3467777888877777654 3 5666666776666 44 7778888887777 5
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
.++..+..|...|.. ..|+++|...++++.+ +.++.....|+.+|.. ..++++|...|+++.+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 567777777766655 3377788888877765 3456667777777764 4577777777777776664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=135.46 Aligned_cols=243 Identities=9% Similarity=-0.080 Sum_probs=189.1
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 043580 396 QNEQPNMALELFHGMVDAGVK---PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINT 472 (665)
Q Consensus 396 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (665)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888888775321 134566777788888888888888888887764 3356778888999999999999
Q ss_pred HHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 473 AFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 473 A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
|...|+++... +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998886 445778999999999999999999999999985 455555555555667779999999999888764
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-AD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
..++...+ .++..+...++.++|...++++... |. ...+..++.++...|++++|...++++++++|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 22344444 4777788888899999999887633 32 578889999999999999999999999999998765
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 043580 626 SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788999999998887
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=133.73 Aligned_cols=200 Identities=8% Similarity=-0.065 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|+++... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345667778888889999999888888776 3456678888888999999999999999988864 44677888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.++++++.+. +..| +...+..++.+|...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998852 3567 57788888999999999999999998875 334678888899999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...++++++..|++...+..++.++...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999998899999999999999999999999987654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-14 Score=134.18 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=193.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc----hHHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS----PWNAIICG 496 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~ 496 (665)
.+......+...|++++|...++.+.+... .+...+..+..+|...|++++|...+++....+++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 455667788899999999999999988642 3445778888999999999999999999988643433 38889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 575 (665)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.. ...| +...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 4567899999999999999999999999998 4577 7888888883444556999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCCC-----chHHHHHHHHHhcCChhH
Q 043580 576 DAEEVIRSMP--MKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQ---PSHG-----PSRVLLSNIYADAGRWED 642 (665)
Q Consensus 576 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~~-----~~~~~l~~~~~~~g~~~~ 642 (665)
+|.+.++++. .+.+...+..+..++...|+ +++|...+++++++. |+.. ..+..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999986 33457888888999988888 888999999998776 4422 468889999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 043580 643 AFSIRKEMRDCGMK 656 (665)
Q Consensus 643 A~~~~~~~~~~~~~ 656 (665)
|.+.++++++....
T Consensus 240 A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 240 ADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999886543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=129.97 Aligned_cols=219 Identities=11% Similarity=-0.033 Sum_probs=157.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCcchHHHHHHHHHh
Q 043580 424 SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAK----CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM 499 (665)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (665)
.+...+...|++++|...++...+. .+...+..+...|.. .+++++|...|++.... .+...+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhC
Confidence 3333444444444444444444441 122334445555666 66777777777666664 255666677777777
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh-
Q 043580 500 ----HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR- 570 (665)
Q Consensus 500 ----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 570 (665)
.+++++|+..+++..+.+ +...+..+...|.. .+++++|.++|++..+. + +...+..+..+|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcC
Confidence 788888888888877754 56677777777777 88888888888888764 3 55667777788877
Q ss_pred ---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCC
Q 043580 571 ---AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD----AGR 639 (665)
Q Consensus 571 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 639 (665)
.+++++|...+++.....++..+..+...+.. .+++++|+..++++.+..| +..+..|+.+|.. .++
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 88888888888887654567778888888888 8899999999999988766 6678888999988 899
Q ss_pred hhHHHHHHHHHHhCCC
Q 043580 640 WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 640 ~~~A~~~~~~~~~~~~ 655 (665)
+++|.+.++++.+.|.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-16 Score=165.06 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=110.7
Q ss_pred chhhHHHHHHHhcCChhhHHHhhhcCC-------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHH
Q 043580 90 VACNIMISGYIRNDRLNDAREVFDKTP-------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVI 162 (665)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 162 (665)
.+||+||.+||+.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999997653 6899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHH
Q 043580 163 SSSVHLGGI-WECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSL 212 (665)
Q Consensus 163 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 212 (665)
.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998877665444444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-15 Score=134.87 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|+++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344555666777777777777777777665 3345667777777777888888888888777753 44566777777777
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|.+.++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888887754 44 56777777788888888888888887765 334567777777788888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+..++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888888888877788888888888888888888888776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=130.18 Aligned_cols=199 Identities=10% Similarity=-0.024 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...++++... +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 345666777788888888888888877765 3345677778888888888888888888888764 44667788888888
Q ss_pred ccc-ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 043580 533 CHA-GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 533 ~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 608 (665)
... |++++|...++++.+. +..| +...+..++.++...|++++|...++++. .+.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888888762 3455 46778888888888888888888888875 33357788888888888999999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 609 GERAAKSLAGLQP-SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 609 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988888 888888888888888889998888888887643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-14 Score=123.46 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=142.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGC 563 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 563 (665)
.+...|..+...+...|++++|++.|++.++.. +-+...+..+..++.+.|++++|...++..... .| +...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 455678888888888888888888888888864 446778888888999999999999999988854 56 6777888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
+...+...++++.|...+++.. .+.+...+..+..++...|++++|+..++++++++|+++..+..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999988875 33467888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 043580 642 DAFSIRKEMRDCGM 655 (665)
Q Consensus 642 ~A~~~~~~~~~~~~ 655 (665)
+|++.|+++++...
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999988654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=157.69 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
..+|+++|++|++.|++++|.++|..|.+. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345666677777777777777776655421 567777777777777777777777777777777777777777777
Q ss_pred HHHhcccCh-HHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc
Q 043580 529 LSTCCHAGL-VDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA 571 (665)
Q Consensus 529 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (665)
|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence 777777776 46677777777776 7777777777776655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-13 Score=133.59 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=189.7
Q ss_pred HHHhccCCHHHHHHHHhhccC-CCcccHHHHHHHHHhcCCH---HHHHHHHhhCCCCCeeeHHHHHHHHhhcC-----Ch
Q 043580 198 NMYCVCSSLVEARSLFDEMKE-RNIVSWNVMLNGFAKAGLV---ELARELFERIPSKDVVSWGTMIDGYLQVE-----RL 268 (665)
Q Consensus 198 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 268 (665)
..+.+.|++++|.+.|+...+ .+...+..+...|...|+. ++|...|++..+.+...+..|...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 344445555555555555443 2222333333333444444 55666665555445555666655444443 56
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccch---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 043580 269 SEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAF---GEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQF 345 (665)
Q Consensus 269 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 345 (665)
++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. +.....+...|...+.++.
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~----- 159 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ----- 159 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG-----
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc-----
Confidence 67777777776655332 233333333332222 223333333333221 2222222233333222222
Q ss_pred HhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCChhHH
Q 043580 346 ELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNE---QPNMALELFHGMVDAGVKPNEITM 422 (665)
Q Consensus 346 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~ 422 (665)
..+.+..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+
T Consensus 160 ----------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 160 ----------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp ----------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred ----------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 2233444555555556666666777776666 6667777776666655 2232222
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHH-H--Hh
Q 043580 423 VSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICG-L--AM 499 (665)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~--~~ 499 (665)
..+...|... ....+++++|...|++.. +.++..+..+... + ..
T Consensus 217 ~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 217 DSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGG
T ss_pred HHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCC
Confidence 2222222221 011146666666666665 3455555555555 3 35
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC-----hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG-----LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR---- 570 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 570 (665)
.+++++|+++|++..+.| +...+..+...|. .| ++++|.++|++.. .-++..+..|..+|..
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCC
Confidence 677777777777777765 4555555665555 44 7888888887764 1256677777777765
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCChhHHH
Q 043580 571 AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--DAGRWEDAF 644 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~ 644 (665)
..++++|...+++.....++.....|...|.. ..|.++|...++++.+..+. .....+..+.. ..++..+|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHH
Confidence 34788888888877655556666667766653 45788888888888776543 33344444432 234667777
Q ss_pred HHHHHHHh
Q 043580 645 SIRKEMRD 652 (665)
Q Consensus 645 ~~~~~~~~ 652 (665)
++.++.+.
T Consensus 413 ~~~~~~~~ 420 (452)
T 3e4b_A 413 RLVQQELA 420 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=139.38 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPN-EITMVSVFCAIASSGT-LKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
..|..+...+...|++++|+..++++.+. .|+ ...|..+..++...|+ +++|...++.+++..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------------
Confidence 45666777777777777777777777763 333 3344444444555553 555555555554433
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
+.+...|..+..++...|++++|+..++++++.. +-+...|..+..++...|++++|+
T Consensus 163 ---------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 163 ---------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHH
Confidence 2233344444444444455555555555554432 224444444444555555555555
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHhhHhhh-cCChHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHH
Q 043580 543 RYFKSMKSVYNVEP-DLKHYGCMVDLLGR-AGQLEDA-----EEVIRSMP-MKA-DVVIWGTLLAASRIHG--NVEVGER 611 (665)
Q Consensus 543 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~~~A~~ 611 (665)
..++++.+. .| +...|+.+..+|.. .|..++| +..++++. ..| +...|..+...+...| ++++|+.
T Consensus 221 ~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 221 QYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 555555432 44 44445555555444 3333444 23344432 122 3444444444444444 3455555
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.++++ +.+|+++.++..|+.+|.+.
T Consensus 298 ~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 298 QLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 55544 44555555555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=134.79 Aligned_cols=244 Identities=9% Similarity=0.064 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCC-hhHHHHHHH
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQK---RDVYSWSAMISGYAQNEQ-PNMALELFHGMVDAGVKPN-EITMVSVFC 427 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 427 (665)
...|..+...+...|++++|+..++.... .+..+|+.+..++...|+ +++|+..|+++.+. .|+ ...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 45788888999999999999999998763 366789999999999997 99999999999985 444 444444444
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLT 506 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 506 (665)
++. ..|++++|+..|+++... +.+...|..+..++...|++++|
T Consensus 175 ~~~-----------------------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 175 LVE-----------------------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHH-----------------------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHH-----------------------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 444 445555555555555554 33455677777777777777777
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHhcc-cChHHHH-----HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC--ChHHH
Q 043580 507 LKIYSDLEKRNIKLNSITFIGVLSTCCH-AGLVDLG-----ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG--QLEDA 577 (665)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A 577 (665)
+..++++++.. +-+...|+.+..++.. .|..++| +..+++... +.| +...|..+..++...| ++++|
T Consensus 220 l~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 220 LQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHH
Confidence 77777777754 4466677777777777 4554555 577888774 478 6788888888888877 68899
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 043580 578 EEVIRSMPMKA-DVVIWGTLLAASRIHG--------N-VEVGERAAKSL-AGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 578 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+.++++...| +...+..++.+|.+.| + +++|+.+++++ .+++|.....|..++..+...
T Consensus 296 ~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 296 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 98888874334 5677888888888764 3 58999999999 999999999998888776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=131.22 Aligned_cols=180 Identities=8% Similarity=0.010 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...++++... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455666666777777777777766655 3345677778888888888888888888888764 45677888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|...++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..+..++...|++++|
T Consensus 136 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999998864 55 68888899999999999999999998875 334678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 610 ERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
...+++++++.|+++..+..++.+....
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999999999998887776554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=123.54 Aligned_cols=229 Identities=9% Similarity=-0.075 Sum_probs=179.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHH
Q 043580 383 DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS----SGTLKEGRWAHEYVLNNSITLNDNLSA 458 (665)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 458 (665)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445666667777777777777777777762 234555666666666 777777777777777765 556667
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHchhCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 043580 459 AIIDMYAK----CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITFIGVLS 530 (665)
Q Consensus 459 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 530 (665)
.+...|.. .+++++|...|++.... .+..++..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777887 88888888888888775 366778888888888 899999999999998865 5667777777
Q ss_pred Hhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043580 531 TCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI 602 (665)
Q Consensus 531 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 602 (665)
.|.. .+++++|..+|++..+. .++..+..+..+|.. .+++++|...+++.....+...+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7777 89999999999998864 256778888899988 99999999999987644457888888889988
Q ss_pred ----cCCHHHHHHHHHHHhccCCCCCc
Q 043580 603 ----HGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 603 ----~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
.+++++|...++++.++.|++..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998886544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-13 Score=123.95 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=151.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence 4556667777777777777777777766542 1122 334445555
Q ss_pred HHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHH
Q 043580 464 YAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLG 541 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 541 (665)
|...|++++|.+.++++... +.+...+..+...+...|++++|.++++++...+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665554 2345567777777778888888888888877633344 456777788888888999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 542 ERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 542 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
...++++.+. .| +...+..++.+|...|++++|...++++. .+.+...+..+...+...|+.++|...++++.+
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999888854 56 67888889999999999999999998875 334677788888889999999999999999999
Q ss_pred cCCCCCchHHH
Q 043580 619 LQPSHGPSRVL 629 (665)
Q Consensus 619 ~~p~~~~~~~~ 629 (665)
..|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998775443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=128.40 Aligned_cols=221 Identities=12% Similarity=0.018 Sum_probs=183.7
Q ss_pred HccCcHHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHH
Q 043580 430 ASSGTLKEGRWAHEYVLNNSIT---LNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANL 505 (665)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 505 (665)
...|++++|...++.+.+.... .+...+..+...+...|++++|...|+++... +.+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3457899999999999876421 23567888999999999999999999999887 4457789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 506 TLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 506 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999874 456789999999999999999999999999864 6754444455556677899999999997765
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 586 --MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH----GPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 586 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+++...+ .++..+...++.++|...++++++..|.. +..+..++.+|...|++++|.+.++++++...
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 33344444 46777888899999999999999887753 57789999999999999999999999988653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=120.72 Aligned_cols=192 Identities=10% Similarity=-0.009 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYA 465 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (665)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444444444444444444444321 1122333333333344444444444444433332 112233333444444
Q ss_pred hc-----------CCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 466 KC-----------GSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 466 ~~-----------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
.. |++++|...+++.....| +...+..+...+...|++++|+..+++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666666555423 34455556666666666666666666666654 55556666666666
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhC
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (665)
..|++++|+..|+++.+. .| +...+..+..++...|++++|...+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666643 45 4555666666666666666666665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=118.54 Aligned_cols=205 Identities=14% Similarity=0.053 Sum_probs=152.5
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc
Q 043580 422 MVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH 500 (665)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 500 (665)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++... +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3344444445555555555555544432 223445566677777777778887777777665 33556777888888888
Q ss_pred -CChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 501 -GDANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 501 -~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHH
Confidence 899999999988887333343 567888888899999999999999998864 56 688888999999999999999
Q ss_pred HHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 578 EEVIRSMP--MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 578 ~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
...++++. .+ .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99998875 33 4677777777778899999999999999999999988865544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=141.45 Aligned_cols=263 Identities=11% Similarity=-0.015 Sum_probs=177.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-h----hHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChhHHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGVKPN-E----ITMVSVFCAIASSGTLKEGRWAHEYVLNN----SI-TLNDNLSA 458 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 458 (665)
.+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...++...+. +. ......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34445555666666666666655532 22 1 23445555556666666666666655432 11 11224556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhC----C---CCcchHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDR----T---TSVSPWNAIICGLAMHGD-----------------ANLTLKIYSDLE 514 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~ 514 (665)
.+...|...|++++|...+++.... . ....++..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6667777777777777777665543 1 112356677777777888 788887777765
Q ss_pred Hc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 515 KR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 515 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
+. +-.+ ...++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|...++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1111 2346777888888899999999999888753111112 3377888899999999999999988875
Q ss_pred C----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHH
Q 043580 586 M----KA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKEMR 651 (665)
Q Consensus 586 ~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 651 (665)
. .. ...++..+...+...|++++|...+++++++.++.. ..+..++.+|...|++++|.+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 256778888889999999999999999987755443 368889999999999999999999987
Q ss_pred hC
Q 043580 652 DC 653 (665)
Q Consensus 652 ~~ 653 (665)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=140.74 Aligned_cols=209 Identities=10% Similarity=-0.017 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSI-NTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDL 513 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 513 (665)
+.+...++..... .+.+...+..+...+...|++ ++|.+.|++.....| +...|..+..+|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444433322 233556777788888888898 999998888877634 4678899999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHhccc---------ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc--------CChH
Q 043580 514 EKRNIKLNSITFIGVLSTCCHA---------GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA--------GQLE 575 (665)
Q Consensus 514 ~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~ 575 (665)
.+. .|+...+..+...+... |++++|++.|++..+. .| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 985 57778899999999999 9999999999999864 77 788999999999998 9999
Q ss_pred HHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 576 DAEEVIRSMP-MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 576 ~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
+|+..++++. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999986 344 78999999999999999999999999999999999999999999999999999999765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=138.34 Aligned_cols=295 Identities=12% Similarity=0.016 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----cchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-hh
Q 043580 353 IASWNALIAGFIRNGMIEDARQLFNNMQK--R-D----VYSWSAMISGYAQNEQPNMALELFHGMVDA----GVKPN-EI 420 (665)
Q Consensus 353 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~ 420 (665)
...+......+...|++++|...|+...+ + + ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566667777777777777766542 2 2 235566666677777777777777665432 11111 23
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCC--------------------HHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAAIIDMYAKCGS--------------------INTAFE 475 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~--------------------~~~A~~ 475 (665)
.+..+...+...|++++|...+....+. +..+ ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445555666666666666666665432 1110 12345555556666666 666665
Q ss_pred HHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHHHHHHHHHhcccChHHHHHH
Q 043580 476 VFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLN----SITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 476 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
.+.+.... .++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554332 111 12345555555566666666666655543210 111 1245555555556666666666
Q ss_pred HHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 043580 544 YFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----VVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 544 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.+++..+...-.++ ..++..++.+|...|++++|...++++. ..++ ..++..+..++...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66555432100111 3445555555566666666666555543 0111 3344555555556666666666
Q ss_pred HHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHHHH
Q 043580 612 AAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 612 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
.+++++++.+.... .+..++.++...|+...+..-+
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 66666665555532 2445555555555555443333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=132.88 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=182.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHH
Q 043580 390 MISGYAQNEQPNMALELFHGMVDAGVKPN-----EITMVSVFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAA 459 (665)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 459 (665)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++...+. +..+ ....+..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445556666666666666666542 22 234455556666666666666666665431 1111 1345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGD--------------------ANLTLKIYSD 512 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 512 (665)
+...+...|++++|...+++.... .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777777888888888877776554 122 2266777777888888 8888888877
Q ss_pred HHHc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhcCChHHHHHHHHh
Q 043580 513 LEKR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRS 583 (665)
Q Consensus 513 ~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (665)
.... +..+ ....+..+...+...|++++|...+++..+...-.+ ...++..++.++...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 1111 234677788888899999999999998875311111 234788889999999999999999988
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHH
Q 043580 584 MP----MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 584 ~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
.. ..++ ..++..+...+...|++++|...+++++++.|... ..+..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 75 1122 56778888999999999999999999988765443 3678899999999999999999999
Q ss_pred HHhCC
Q 043580 650 MRDCG 654 (665)
Q Consensus 650 ~~~~~ 654 (665)
+++..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 98753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-13 Score=116.94 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=148.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+..+|..+...|...|++++|++.|++..+. +.+..++..+..++...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 4567888999999999999999999998887 4456788999999999999999999999998864 4566778888888
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 608 (665)
+...++++.|...+.+.... .| +...+..+..+|.+.|++++|++.++++. .+.+...|..++.++.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999999854 67 78889999999999999999999999986 33478899999999999999999
Q ss_pred HHHHHHHHhccCCCCCc
Q 043580 609 GERAAKSLAGLQPSHGP 625 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~ 625 (665)
|+..++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=137.63 Aligned_cols=265 Identities=8% Similarity=-0.064 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcc--CCc-----hhhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------Cc
Q 043580 321 YDFIQATIIHFYAACGRINLARLQFELGI--KDH-----IASWNALIAGFIRNGMIEDARQLFNNMQKR---------DV 384 (665)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~ 384 (665)
....+......+...|+++.|...+++.+ .|+ ...+..+...+...|++++|...++..... ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445556666777777777777776533 222 235666667777777777777766654311 23
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHccCc--------------------HHHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGV-KPN----EITMVSVFCAIASSGT--------------------LKEGR 439 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~ 439 (665)
.++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3566666777777777777777776654210 011 2355556666667777 77777
Q ss_pred HHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHH
Q 043580 440 WAHEYVLNN----SITLN-DNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTL 507 (665)
Q Consensus 440 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~ 507 (665)
..+....+. +..+. ..++..+...|...|++++|...+++.... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 776665432 11111 234556666777777777777777766554 111 125666666777777777777
Q ss_pred HHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhHHHHHhhHhhhcCChHHHH
Q 043580 508 KIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 508 ~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543100 11 34566666677777777777777776654311111 1445666777777777777777
Q ss_pred HHHHhCC
Q 043580 579 EVIRSMP 585 (665)
Q Consensus 579 ~~~~~~~ 585 (665)
..+++..
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=139.64 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=145.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
..+++.|...+...|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+. .| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4578888888889999999999999888863 446778999999999999999999999999854 78 688999999
Q ss_pred hHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 643 (665)
.+|...|++++|++.++++. ..| +...|..++.++...|++++|+..++++++++|+++..+..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999886 344 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 043580 644 FSIRKEMRDC 653 (665)
Q Consensus 644 ~~~~~~~~~~ 653 (665)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=115.83 Aligned_cols=221 Identities=8% Similarity=-0.026 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 043580 401 NMALELFHGMVDAGVKPNEITMVSVFCAIA-------SSGTL-------KEGRWAHEYVLNNSITLNDNLSAAIIDMYAK 466 (665)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (665)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777766632 223344444444443 23554 6777777777663223344567777777788
Q ss_pred cCCHHHHHHHHHHchhCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc-ccChHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDRTTS-VS-PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC-HAGLVDLGER 543 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~ 543 (665)
.|++++|..+|+++....|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888777554 33 67778888888888888888888888754 344455544333322 2588888888
Q ss_pred HHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 544 YFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA--DVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 544 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
+|++..+. .| +...|..++..+.+.|++++|..+|+++.. .| ....|..++....+.|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888754 45 677788888888888888888888888753 33 3567777788888888888888888888
Q ss_pred hccCCCCCch
Q 043580 617 AGLQPSHGPS 626 (665)
Q Consensus 617 ~~~~p~~~~~ 626 (665)
++..|++...
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=113.31 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 4445555556666666666666655432 335556666667777777777777777777643 44 566677777777
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 646 (665)
...|++++|.+.++++. .+.+...+..++.++...|++++|...++++++..|+++..+..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777764 3346677778888888888888888888888888888888888888888888999999888
Q ss_pred HHHHHhCC
Q 043580 647 RKEMRDCG 654 (665)
Q Consensus 647 ~~~~~~~~ 654 (665)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 88887754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=130.60 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=161.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC-----cchHH
Q 043580 425 VFCAIASSGTLKEGRWAHEYVLNN----SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS-----VSPWN 491 (665)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~ 491 (665)
....+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+.+.... .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334556667777777777777642 1111 2245667777888888888888887776654 111 23577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHH
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYG 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 562 (665)
.+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|.+.+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888999988888887753111 11 2367788888899999999999998887521 1214 466788
Q ss_pred HHhhHhhhcCChHHHHHHHHhCC------CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMP------MKA-DVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.++.+|.+.|++++|...+++.. ..| ....+..+...+...|+ +++|+.++++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999988875 112 12234567777888888 88888888877 444555566888999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 043580 633 IYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~~~ 652 (665)
+|...|++++|.++++++++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999977
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-12 Score=116.81 Aligned_cols=191 Identities=12% Similarity=-0.030 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRT--TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+..+......+...|++++|...|++..... ++...+..+..++...|++++|+..+++..+.. +.+...+..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 3445555555555666666666665555542 344444445555555555555555555555532 2233445555555
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-Ch-------hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DL-------KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD---VVIWGTLLAA 599 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~ 599 (665)
+...|++++|...+++..+. .| +. ..|..+...+...|++++|++.++++. ..|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555532 34 23 234444455555555555555555543 2232 2334444444
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+... +...++++..+.+..+..+.. ......+.+++|++.++++++...
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4322 223334444444433222221 123333445999999999988654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=130.88 Aligned_cols=183 Identities=9% Similarity=-0.055 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 469 SINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDA-NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
.++++...++......| +...+..+...+...|++ ++|+..+++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777666534 567888899999999999 99999999999874 4467899999999999999999999999
Q ss_pred HhHhhcCCCCChhHHHHHhhHhhhc---------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CCHH
Q 043580 547 SMKSVYNVEPDLKHYGCMVDLLGRA---------GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH--------GNVE 607 (665)
Q Consensus 547 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~~ 607 (665)
+.. .+.|+...+..+..+|... |++++|+..++++. .+.+...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999 5578888999999999999 99999999999986 344788999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 608 VGERAAKSLAGLQP---SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 608 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+..++++++++| +++..+..++.+|...|++++|.+.|+++++...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-11 Score=116.33 Aligned_cols=215 Identities=10% Similarity=-0.037 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHHHchh-CCC-CcchHHHHHHHHHh
Q 043580 436 KEGRWAHEYVLNNSITLNDNLSAAIIDMYA-------KCGSI-------NTAFEVFYHIRD-RTT-SVSPWNAIICGLAM 499 (665)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~ 499 (665)
+.|..+|+.++... +.++..+..++..+. +.|++ ++|..+|++... ..| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887653 445566766766665 35876 899999999998 455 45589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-hH-HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh-hcCChH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLN-SI-TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG-RAGQLE 575 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 575 (665)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|++..+ ..| +...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999984 554 44 799999999999999999999999985 455 5566655444432 369999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCChhHHHHHHHH
Q 043580 576 DAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGL---QPS-HGPSRVLLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 576 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 649 (665)
+|..+|+++. .+.+...|..++..+.+.|++++|..+++++++. .|+ ....+..++..+...|+.++|.+++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999986 3347889999999999999999999999999985 554 566788899999999999999999999
Q ss_pred HHhCCCc
Q 043580 650 MRDCGMK 656 (665)
Q Consensus 650 ~~~~~~~ 656 (665)
+++...+
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9886553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=130.86 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=124.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHc------CC
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDA-------GVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNN------SI 450 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 450 (665)
..++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...++.+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346677777777888888888888777652 11122234444555555555555555555555432 11
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Ch
Q 043580 451 TL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NS 522 (665)
Q Consensus 451 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~ 522 (665)
.+ .... +..+...+...|++++|...++++.+. +-.| ..
T Consensus 107 ~~~~~~~---------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 107 HPAVAAT---------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp CHHHHHH---------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ChHHHHH---------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 11 1233 444444445555555555555444432 1111 22
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----------
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM---------- 586 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 586 (665)
..+..+...+...|++++|.++++++.+.. +..| ...++..++.+|...|++++|...++++..
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345555556666666666666666655321 1123 344556666666666666666666655531
Q ss_pred CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 587 KA-------DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 587 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+ ....+..+...+...+.+.++...++++....|.....+..++.+|...|++++|.++++++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01 01112222233344556666677777777777888888888888888888888888888888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=131.27 Aligned_cols=264 Identities=10% Similarity=0.006 Sum_probs=164.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-Cc----chHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-ChhHHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQK--R-DV----YSWSAMISGYAQNEQPNMALELFHGMVDA----GVKP-NEITMVSVF 426 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll 426 (665)
+...+...|++++|...|+...+ + +. ..+..+...|...|++++|+..+++..+. +..| ....+..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33344444555555554444331 1 11 24455555555555666655555554432 1111 123344455
Q ss_pred HHHHccCcHHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCC-----------------HHHHHHHHHHchhC-
Q 043580 427 CAIASSGTLKEGRWAHEYVLNN----SIT-LNDNLSAAIIDMYAKCGS-----------------INTAFEVFYHIRDR- 483 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~- 483 (665)
..+...|++++|...+....+. +-. .....+..+...|...|+ +++|.+.+++....
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555666666666666555432 111 122355566667777777 77777776665442
Q ss_pred ---C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc
Q 043580 484 ---T---TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 484 ---~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
. .....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 11235677777888888888888888877653211 11 2367788888899999999999998877531
Q ss_pred CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 553 NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 553 ~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
.-.. ...++..++.+|...|++++|...++++.. .+ ...++..+..++...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 256778889999999999999999988751 11 24577788889999999999999999998877
Q ss_pred CC
Q 043580 621 PS 622 (665)
Q Consensus 621 p~ 622 (665)
+.
T Consensus 374 ~~ 375 (411)
T 4a1s_A 374 XX 375 (411)
T ss_dssp CH
T ss_pred hh
Confidence 64
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-09 Score=112.02 Aligned_cols=219 Identities=9% Similarity=-0.027 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHc
Q 043580 402 MALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGR-WAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHI 480 (665)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 480 (665)
.+..+|++.... ++-....|.....-+...|+.+.|. .+++..... .+.+...+...+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2334455555555566667777775 777777653 2344555666777777788888888888777
Q ss_pred hhC-----------CCC------------cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHhccc-
Q 043580 481 RDR-----------TTS------------VSPWNAIICGLAMHGDANLTLKIYSDLEKR-NIKLNSITFIGVLSTCCHA- 535 (665)
Q Consensus 481 ~~~-----------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~- 535 (665)
... .|+ ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 653 121 235777777778889999999999999876 2 22334444333333333
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMK-A----DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A 609 (665)
++.+.|.++|+...+. .| +...+...++.....|+.+.|..+|+++... | ....|...+.--.+.|+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp SCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4589999999999876 34 5667778888888899999999999998732 3 346788888888889999999
Q ss_pred HHHHHHHhccCCCCCch
Q 043580 610 ERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 610 ~~~~~~~~~~~p~~~~~ 626 (665)
..+.+++.+..|+++..
T Consensus 561 ~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 99999999999998763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=112.06 Aligned_cols=208 Identities=9% Similarity=-0.006 Sum_probs=165.9
Q ss_pred CChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHH
Q 043580 417 PNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIIC 495 (665)
Q Consensus 417 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 495 (665)
.++..+......+...|++++|...++...+...+++...+..+..++...|++++|...+++.....| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888889999999999999999999887556777777799999999999999999999998745 4568899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHh
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNS-------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMV 565 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 565 (665)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999999864 3345 457788888899999999999999998 45775 56788888
Q ss_pred hHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
.+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.....|+.+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 233322 122344443332 445677999999999999999999988887776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-10 Score=111.08 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=70.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHH-----
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKL----NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYG----- 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----- 562 (665)
.+...+...|++++|...+++........ ...++..+...+...|++++|...+++......-......+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 34444455555555555555544321110 112344444445555555555555555443211000111111
Q ss_pred HHhhHhhhcCChHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHH
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMPMK-AD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLL 630 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l 630 (665)
..+..+...|++++|...+++.... |. ...+..+...+...|++++|...++++.+..+... ..+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1222344555555555555554311 11 12334444555555555555555555544332211 134445
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 043580 631 SNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+.++...|++++|.+.++++.+
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=120.36 Aligned_cols=232 Identities=6% Similarity=-0.082 Sum_probs=167.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CC---C-ChhHHH
Q 043580 390 MISGYAQNEQPNMALELFHGMVDAG-VKPN----EITMVSVFCAIASSGTLKEGRWAHEYVLNNS--IT---L-NDNLSA 458 (665)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~-~~~~~~ 458 (665)
....+...|++++|+..|++..+.- -.++ ...+..+...+...|+++.|...+....+.. .. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777766531 0122 2455666667777777777777777765421 11 1 124567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhC---CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHHHH
Q 043580 459 AIIDMYAKCGSINTAFEVFYHIRDR---TTSV----SPWNAIICGLAMHGDANLTLKIYSDLEKR----NI-KLNSITFI 526 (665)
Q Consensus 459 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~ 526 (665)
.+...|...|++++|...+++.... .++. .++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888999999999888887654 1221 36788889999999999999999988772 22 23456788
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCC--CC-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNV--EP-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPMKA-DVVIWGTLLAA 599 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 599 (665)
.+...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++....| ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999998753111 22 23345678888999999 999999999986544 34567788899
Q ss_pred HHhcCCHHHHHHHHHHHhccCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p 621 (665)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999976543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-12 Score=122.09 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=148.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC----hh
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDA----GVKP-NEITMVSVFCAIASSGTLKEGRWAHEYVLNNSIT-LN----DN 455 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 455 (665)
.+..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+....+.... ++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555544321 1111 1223444455555556666666555555431100 11 22
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHchhC---CC----CcchHHHHHHHHHhcCChHHHHH
Q 043580 456 LSAAIIDMYAKCGS--------------------INTAFEVFYHIRDR---TT----SVSPWNAIICGLAMHGDANLTLK 508 (665)
Q Consensus 456 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~ 508 (665)
++..+...+...|+ +++|...+++.... .+ ....+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45556666666666 66776666655432 11 12356677778888888888888
Q ss_pred HHHHHHHcCC-CCC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHH
Q 043580 509 IYSDLEKRNI-KLN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEE 579 (665)
Q Consensus 509 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (665)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8887765310 111 236778888888999999999999887753111111 5677888999999999999999
Q ss_pred HHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 580 VIRSMPM----KAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 580 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
.++++.. .++ ..++..+...+...|++++|...+++++++.++.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9988751 122 4577788899999999999999999999887653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-11 Score=106.07 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+..+...+...|++++|...++++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34566778888999999999999998877 4456778889999999999999999999999864 557788889999999
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
..|++++|.+.++++.+. .| +...+..++.++...|++++|...++++. .+.+...+..++..+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999864 55 78889999999999999999999999875 3346788999999999999999999
Q ss_pred HHHHHHhccCCCCCchH
Q 043580 611 RAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~ 627 (665)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=121.02 Aligned_cols=224 Identities=10% Similarity=-0.013 Sum_probs=144.6
Q ss_pred HHHccCcHHHHHHHHHHHHHcCC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCC-----cchHHHHH
Q 043580 428 AIASSGTLKEGRWAHEYVLNNSI-TL----NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR---TTS-----VSPWNAII 494 (665)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~l~ 494 (665)
.+...|++++|...++...+... .+ ...++..+...|...|+++.|...+.+.... .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 33455666666666666543211 01 1234556667777777777777777665543 111 23566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCC-ChhHHHHHhh
Q 043580 495 CGLAMHGDANLTLKIYSDLEKR----NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEP-DLKHYGCMVD 566 (665)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~ 566 (665)
..|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+... ..| ...++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777888888888877776653 1111 124667777888888888888888888775111 234 4667778888
Q ss_pred HhhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 567 LLGRAGQLEDAEEVIRSMP----M--KAD-VVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
+|.+.|++++|...+++.. . .|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 8888888888888887764 1 122 2344555555667777 77777777763 2334444557788999999
Q ss_pred cCChhHHHHHHHHHHh
Q 043580 637 AGRWEDAFSIRKEMRD 652 (665)
Q Consensus 637 ~g~~~~A~~~~~~~~~ 652 (665)
.|++++|.+.++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=122.48 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=147.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQK--------R---DVYSWSAMISGYAQNEQPNMALELFHGMVDA------G 414 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 414 (665)
+..++..+...+...|++++|...++.+.+ . ....+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999988764 2 3457888999999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHHccCcHHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 043580 415 VKP-NEITMVSVFCAIASSGTLKEGRWAHEYVLNN------SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS 486 (665)
Q Consensus 415 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 486 (665)
-.| ....+..+...+...|++++|...++.+.+. +..| ....+..+...+...|++++|.+.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 222 3456777778888889999998888887653 1111 1233444455555555555555555444331
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc------CCCC-Ch
Q 043580 487 VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY------NVEP-DL 558 (665)
Q Consensus 487 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p-~~ 558 (665)
++.... +..| ...++..+...+...|++++|.++++++.+.. ...+ ..
T Consensus 183 -----------------------~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 183 -----------------------YQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp -----------------------HHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred -----------------------HHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 000000 1111 22345555666666666666666666655320 1112 11
Q ss_pred hH------HHHHhhHhhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 559 KH------YGCMVDLLGRAGQLEDAEEVIRSMPM-KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 559 ~~------~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.. +..+...+...+.+.+|...++.... .| ...++..+..+|...|++++|...+++++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12 22233334455666666666766652 23 5677888999999999999999999999988775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-09 Score=109.12 Aligned_cols=418 Identities=9% Similarity=-0.004 Sum_probs=267.1
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHhhcCC---hhHHHHHHHHHHHCC-CCCCHHHHH
Q 043580 219 RNIVSWNVMLNGFAKAGLVELARELFERIPS--K-DVVSWGTMIDGYLQVER---LSEALTMYRAMLCDG-IAPNDVMIV 291 (665)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~~~ 291 (665)
.|..+|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.++ ++.+..+|++..... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4667899999999889999999999998875 3 44567777777777888 999999999988753 247888777
Q ss_pred HHHHHhhcccch--------hhHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCChHHHHHHHHhccCC
Q 043580 292 DLISACGRAMAF--------GEGLQIHSIIVK-AGF-DCY-DFIQATIIHFYAA---------CGRINLARLQFELGIKD 351 (665)
Q Consensus 292 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~ 351 (665)
..+....+.++. +.+.++|+..+. .|. .++ ..++...+..... .++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777665554443 334466666554 355 443 4566666665442 23456677777765532
Q ss_pred ch----hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCC---------
Q 043580 352 HI----ASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD--AGVK--------- 416 (665)
Q Consensus 352 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~--------- 416 (665)
.. .+|......--..+. ..+.+++.+ ...+++.|...+.++.. .++.
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 11 222221111000000 001111111 01122333333333221 0110
Q ss_pred ------C--C---h---hHHHHHHHHHHccC-------cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-
Q 043580 417 ------P--N---E---ITMVSVFCAIASSG-------TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF- 474 (665)
Q Consensus 417 ------p--~---~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~- 474 (665)
| + . ..|...+.---..+ ..+.+..+++.++... +....++...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 0 11222221111111 1234556777776642 446677777788888889999996
Q ss_pred HHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------hHHHHHHHHHh
Q 043580 475 EVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---------KLN------------SITFIGVLSTC 532 (665)
Q Consensus 475 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~ 532 (665)
.+|++.....| +...|...+....+.|+++.|.++|++++.... .|+ ...|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999887644 455677788888899999999999999987410 142 23577777777
Q ss_pred cccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhc-CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRA-GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
.+.|+.+.|..+|.++.+. .-.+....|...+..-.+. ++.+.|..+|+... .+.+...|...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 7889999999999999864 0112344555444444444 45899999999886 334677788888888889999999
Q ss_pred HHHHHHHhccCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 610 ERAAKSLAGLQPS---HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 610 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
..+|++++...|+ ....+..+...-...|+.+.+.++.+++.+.-.+
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999998884 4455777777788899999999999999886543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-09 Score=107.13 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=165.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHHccCcHHHHHHHHHHHHHcC--C---CC-ChhHH
Q 043580 389 AMISGYAQNEQPNMALELFHGMVDAGV-KPN----EITMVSVFCAIASSGTLKEGRWAHEYVLNNS--I---TL-NDNLS 457 (665)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~ 457 (665)
.....+...|++++|+..|++..+... .++ ...+..+...+...|+++.|...+....+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455677777777777777665311 122 2345666677777788888877777765421 1 11 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHH
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEK-----RNIKLNSITF 525 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 525 (665)
..+..+|...|++++|.+.|++.... .++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 67888888899999998888877654 122 23577788889999999999999998876 32 3336678
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCC--C-ChhHHHHHhhHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVE--P-DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMPMKAD-VVIWGTLLA 598 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 598 (665)
..+...+.+.|++++|...+++..+...-. | ....+..+...|...|+ +.+|+..+++....|+ ...+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 889999999999999999999988652221 2 23446667777778888 9999999998654433 456677888
Q ss_pred HHHhcCCHHHHHHHHHHHhcc
Q 043580 599 ASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.|...|++++|...++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-11 Score=111.77 Aligned_cols=191 Identities=9% Similarity=0.005 Sum_probs=128.9
Q ss_pred HHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChHHHHHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---KL--NSITFIGVL 529 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p--~~~~~~~l~ 529 (665)
..|...|++++|...|.+.... ..+ ..+|+.+..+|...|++++|+..+++..+... .+ -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456667777777777665543 111 34677777777888888888887777765311 11 134677888
Q ss_pred HHhccc-ChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CH-----HHHHH
Q 043580 530 STCCHA-GLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DV-----VIWGT 595 (665)
Q Consensus 530 ~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~-----~~~~~ 595 (665)
..|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|+..++++. ..| .. ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 9999999999988754110111 3568888999999999999999998875 222 21 25778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHHh
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----RVLLSNIYA--DAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 652 (665)
++.++...|++++|+..++++++++|+.... +..|+.++. ..+++++|++.|+++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8888999999999999999999999987654 334555554 45678888888865543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.4e-11 Score=124.22 Aligned_cols=165 Identities=11% Similarity=0.090 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...++.+..+|.+.|++++|++.|++..+..| +..+|..+..+|.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46678888899999999999999998888744 46688889999999999999999999998864 44677899999999
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 609 (665)
...|++++|++.|++..+. .| +...|..+..+|...|++++|++.++++. ..| +...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999854 78 68899999999999999999999999876 344 678899999999999999999
Q ss_pred HHHHHHHhccCCC
Q 043580 610 ERAAKSLAGLQPS 622 (665)
Q Consensus 610 ~~~~~~~~~~~p~ 622 (665)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999998876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=105.87 Aligned_cols=189 Identities=9% Similarity=-0.084 Sum_probs=133.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-hHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI-KLN-SITFI 526 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~ 526 (665)
+...+..+...+.+.|++++|...|+++....|+ ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3345556677777888888888888888776443 45677777888888888888888888887531 111 34566
Q ss_pred HHHHHhcc--------cChHHHHHHHHHHhHhhcCCCC-ChhHH-----------------HHHhhHhhhcCChHHHHHH
Q 043580 527 GVLSTCCH--------AGLVDLGERYFKSMKSVYNVEP-DLKHY-----------------GCMVDLLGRAGQLEDAEEV 580 (665)
Q Consensus 527 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 580 (665)
.+..++.. .|++++|+..|+++.+. .| +.... ..++.+|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777777 88888888888888865 45 33333 4567788888888888888
Q ss_pred HHhCC-CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCChhH
Q 043580 581 IRSMP-MKA----DVVIWGTLLAASRIH----------GNVEVGERAAKSLAGLQPSHGPS---RVLLSNIYADAGRWED 642 (665)
Q Consensus 581 ~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~ 642 (665)
++++. ..| ....+..++.++... |++++|+..++++++..|+++.. ...+..++...+++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 88875 223 245677777777765 88888999999888888888644 4455556666555554
Q ss_pred HH
Q 043580 643 AF 644 (665)
Q Consensus 643 A~ 644 (665)
+.
T Consensus 251 ~~ 252 (261)
T 3qky_A 251 DA 252 (261)
T ss_dssp CT
T ss_pred hh
Confidence 43
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=114.59 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc-----CCCC-
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY-----NVEP- 556 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p- 556 (665)
+..+...+...|++++|...+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +-.|
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444444444455555555544444432 0011 23345555555555666666666555554320 0122
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----------CC-CHHHHHHHHHHHHhc------CCHHHHHHHHHHHhcc
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----------KA-DVVIWGTLLAASRIH------GNVEVGERAAKSLAGL 619 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~ 619 (665)
...++..++.+|...|++++|...++++.. .+ ....|..+....... ..+..+...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 344555566666666666666666555430 11 112222222222221 1233444444444444
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.|.....+..|+.+|...|++++|.++++++++.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666778888888888888888888887663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=102.87 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=81.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChH
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 575 (665)
...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+. .| ++.+|..+..+|...|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 3445555555555554432 22 2334445556666666666666666666633 55 5666666666666666666
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 576 DAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGER-AAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 576 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
+|+..++++. ..| ++..|..+...+.+.|++++|.. +++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666666654 233 45666666666666666654443 3466777777777666666666666664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=123.14 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=130.1
Q ss_pred HhcCCHHHHHHHHHHch--------hC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 465 AKCGSINTAFEVFYHIR--------DR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
...|++++|.+.+++.. .. +.+...+..+..++...|++++|+..+++..+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66778888888888776 43 3445677777888888888888888888888753 44667788888888888
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
|++++|++.|+++.+. .| +...+..+..+|.+.|++++ ++.++++. .+.+...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888754 67 67778888888888888888 88887775 334677788888888888888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 613 AKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888766555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=106.79 Aligned_cols=169 Identities=8% Similarity=-0.017 Sum_probs=138.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhH
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN---SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKH 560 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 560 (665)
.+...+..+...+...|++++|+..|+++.+.. +.+ ...+..+..++...|++++|+..|+++.+.+.-.| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445667778888999999999999999999864 223 56788899999999999999999999997622223 2456
Q ss_pred HHHHhhHhhh--------cCChHHHHHHHHhCC-CCC-CHHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 043580 561 YGCMVDLLGR--------AGQLEDAEEVIRSMP-MKA-DVVIW-----------------GTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 561 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~~-~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 613 (665)
+..+..++.. .|++++|+..++++. ..| +...+ ..++.++...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7788889988 999999999999986 223 22333 56688899999999999999
Q ss_pred HHHhccCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 043580 614 KSLAGLQPSHG---PSRVLLSNIYADA----------GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 614 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 654 (665)
+++++..|+++ ..+..++.+|... |++++|++.++++++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999965 4688999999977 89999999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-09 Score=97.39 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=77.7
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
...|++++|...|+++.+ ..| +...+..+.....-.+.. ......+...+.+.|+++.|+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRL---------------AKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp -CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHcCcHHHHHH
Confidence 346788999999999884 367 344433222111110000 0112356777899999999999
Q ss_pred HHHHHhccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 043580 612 AAKSLAGLQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRL 658 (665)
Q Consensus 612 ~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 658 (665)
.++++++..|+++ ..+..++.+|.+.|++++|++.++.+...+....
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999986 5588999999999999999999999988765443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=100.38 Aligned_cols=103 Identities=11% Similarity=-0.084 Sum_probs=94.9
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 6788 68888899999999999999999999986 34478999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|.+|...|++++|++.|+++++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.5e-11 Score=99.66 Aligned_cols=125 Identities=9% Similarity=-0.056 Sum_probs=107.5
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g 604 (665)
|...+...|++++|+..++... ...| +...+..+..+|.+.|++++|++.++++. .. .+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999887 4467 56777789999999999999999999986 33 47899999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHhCCC
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSI-RKEMRDCGM 655 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 655 (665)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. ++++++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887776 588877544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-09 Score=98.85 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=129.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKRDVY-SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEG 438 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 438 (665)
++-..-.|.+..+..-...+...+.. .-.-+.++|...|++.... .-.|....+..+ ..|...+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l-a~~~~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY-VQFLDTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH-HHHHTTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH-HHHhccc----H
Confidence 34445567777777655555433222 2223446666666665311 122332222222 2222222 4
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 439 RWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT---SVSPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
...++...+.+ .++...+..+..++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555554433 33344444566666667777777777766655432 344555666666777777777777777665
Q ss_pred cCCCC-----ChHHHHHHHHHhcc--cC--hHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCC
Q 043580 516 RNIKL-----NSITFIGVLSTCCH--AG--LVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPM 586 (665)
Q Consensus 516 ~~~~p-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (665)
. .| +..+...++.++.. .| ++.+|..+|+++.+. .|+..+...+..++...|++++|.+.++.+..
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 44 24444555544222 23 666677777776533 34422323333366666777777776664431
Q ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 587 ------------KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 587 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
+.++.++..++......|+ .|.++++++.+..|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1244555455555555565 6666777777777766653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-09 Score=104.39 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=149.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCh----hHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC--CC-h
Q 043580 387 WSAMISGYAQNEQPNMALELFHGMVDAGV-KPNE----ITMVSVFCAIASSGTLKEGRWAHEYVLNN----SIT--LN-D 454 (665)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~ 454 (665)
++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.. |. .
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44455556666777777666666543210 1111 22344555666777777777777766532 221 22 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HHHH-
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS------VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS-ITFI- 526 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~- 526 (665)
..+..+...+...|++++|...+++.....+. ..++..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 34555777788888888888888776654221 235667777888889999999988887754212211 1121
Q ss_pred ----HHHHHhcccChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC---CH-H
Q 043580 527 ----GVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA---DV-V 591 (665)
Q Consensus 527 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~~-~ 591 (665)
..+..+...|++++|..++++.... ...+. ...+..+..++...|++++|...++++. ..+ +. .
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 2334466889999999999888743 11111 2245677888889999999999988764 111 22 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.+..+..++...|+.++|...+++++++.+.
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5566677788999999999999999876553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-10 Score=91.79 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=95.1
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 600 (665)
.+..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|...++++. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 3455566666677777777777776643 34 55666667777777777777777777664 334566777778888
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888888888899999988888887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=98.15 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhH-
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDL- 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 567 (665)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++... .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44555666677777777777777766643 345667777777888888888888888887644 3443333322222
Q ss_pred hhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCChhHH
Q 043580 568 LGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 643 (665)
+...+...+|+..+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 122233445777777765 334 68889999999999999999999999999999986 45899999999999999999
Q ss_pred HHHHHHHHh
Q 043580 644 FSIRKEMRD 652 (665)
Q Consensus 644 ~~~~~~~~~ 652 (665)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-09 Score=94.04 Aligned_cols=173 Identities=7% Similarity=-0.069 Sum_probs=142.5
Q ss_pred HHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC----hHHHHHHHHHHh
Q 043580 473 AFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG----LVDLGERYFKSM 548 (665)
Q Consensus 473 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 548 (665)
|.+.|++..+. .++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|.++|++.
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44555555553 566777788888888899999999999988865 56677778888877 6 899999999998
Q ss_pred HhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 043580 549 KSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKAD----VVIWGTLLAASRI----HGNVEVGERAAKSL 616 (665)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 616 (665)
.+. -++..+..|..+|.. .+++++|+..+++.....+ +..+..|...|.. .++.++|+..++++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 753 267788888888887 8899999999999874433 7889999999988 88999999999999
Q ss_pred hccCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 043580 617 AGLQPSHGPSRVLLSNIYADA-G-----RWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 617 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 655 (665)
.++ |.++..+..|+.+|..- | ++++|.+.|+++.+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 77788899999998754 3 89999999999988775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-09 Score=97.14 Aligned_cols=239 Identities=7% Similarity=-0.030 Sum_probs=149.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 043580 394 YAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTA 473 (665)
Q Consensus 394 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 473 (665)
..-.|++..++.-...+ ..........-+.+++...|++... ..-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34567777777633222 1111222333344666666665431 11122222333333332 222 6
Q ss_pred HHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 474 FEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 474 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
...|++.... .++..++..+..++...|++++|++++.+.+..+-. -+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776655 355555667777888888888888888887765521 34566777788888888888888888888754
Q ss_pred cCCCC-----ChhHHHHHhhH--hhhcC--ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Q 043580 552 YNVEP-----DLKHYGCMVDL--LGRAG--QLEDAEEVIRSMPMK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGL-- 619 (665)
Q Consensus 552 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 619 (665)
.| +..+...|+.+ ....| ++.+|..+|+++..+ |+..+...++.++.+.|++++|...++.+.+.
T Consensus 166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 24555555555 33334 888888888887644 55333344445778888888888888877765
Q ss_pred --------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 620 --------QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 620 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7888888887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=102.53 Aligned_cols=164 Identities=12% Similarity=-0.020 Sum_probs=137.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHH-
Q 043580 485 TSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGC- 563 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~- 563 (665)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 445567777888889999999999999998864 446778889999999999999999999999854 675443332
Q ss_pred HhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCC
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH--GPSRVLLSNIYADAGR 639 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 639 (665)
....+...++.++|...+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ...+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3334667888899999998875 44478899999999999999999999999999999998 7889999999999999
Q ss_pred hhHHHHHHHHHHh
Q 043580 640 WEDAFSIRKEMRD 652 (665)
Q Consensus 640 ~~~A~~~~~~~~~ 652 (665)
.++|...+++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-10 Score=117.26 Aligned_cols=161 Identities=11% Similarity=-0.029 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
.|++++|.+.+++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46788888888888776 3346678888888888888888888888888764 445677888888888888888888888
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH---GNVEVGERAAKSLAGL 619 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 619 (665)
++..+. .| +...+..+..+|...|++++|.+.++++. .+.+...+..+..++... |++++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888854 66 67788888888888888888888888875 334577788888888888 8888888888888888
Q ss_pred CCCCCchHHHHH
Q 043580 620 QPSHGPSRVLLS 631 (665)
Q Consensus 620 ~p~~~~~~~~l~ 631 (665)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 888888777765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=97.65 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=117.8
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCC-cchHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTS-VSPWNA----------------IICGLAMHGDANLTLKIYSDLEKRNIKLNSIT 524 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 524 (665)
..+...|++++|...|++.....|+ ...|.. +..++...|++++|+..+++.++.. +.+...
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3445556666666666655554222 334444 8888999999999999999999864 457788
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ--LEDAEEVIRSMPMKADV--VIWGTLLAA 599 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~ 599 (665)
+..+...+...|++++|+..|+++.+. .| +...+..+..+|...|+ .+.+...++... .|++ ..+.....+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 999999999999999999999999954 78 78899999998876654 455666666665 3433 345556777
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+...|++++|+..+++++++.|+..
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCHH
Confidence 8889999999999999999999743
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=102.30 Aligned_cols=173 Identities=8% Similarity=-0.081 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCC---CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----h
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRT---TS----VSPWNAIICGLAMH-GDANLTLKIYSDLEKRNIKL-N----S 522 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~ 522 (665)
++..+..+|...|++++|...+++..... .+ ..++..+...|... |++++|+..+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44555556666666666666665554431 11 23566777777775 88888888888877632111 1 3
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC---h-----hHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCH---
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD---L-----KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADV--- 590 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~--- 590 (665)
.++..+...+...|++++|+..|++..+. .|+ . ..+..++.++...|++++|...+++.. ..|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 46777888888899999999999988854 332 1 146777888888899999999998875 33431
Q ss_pred ---HHHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 591 ---VIWGTLLAASR--IHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 591 ---~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
..+..++.++. ..+++++|+..++++..++|.....+..+-
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 13444555554 456788999999888888887655444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-10 Score=90.18 Aligned_cols=101 Identities=7% Similarity=0.014 Sum_probs=63.8
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+.| ....+...+..|.+.|++++|++.|+++. .+.+...|..+..++.+.|++++|+..++++++++|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 445 34555566666666666666666666654 223556666666666666666666666666666666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 043580 631 SNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|.+|...|++++|++.|+++++..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 666666666666666666666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=101.36 Aligned_cols=201 Identities=11% Similarity=-0.006 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHccCcHHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-----CC--
Q 043580 420 ITMVSVFCAIASSGTLKEGRWAHEYVLNN------SITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-----TT-- 485 (665)
Q Consensus 420 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-- 485 (665)
..+..+...+...|++++|...+..+.+. +-.| ...++..+...|...|++++|...+.+.... .+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555556666666666666666665543 1112 2345666777777777777777777766554 11
Q ss_pred --CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHHHHHHHHHhcccChHHHHHHHHHHhHhhc----
Q 043580 486 --SVSPWNAIICGLAMHGDANLTLKIYSDLEKR------NIKL-NSITFIGVLSTCCHAGLVDLGERYFKSMKSVY---- 552 (665)
Q Consensus 486 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 552 (665)
...++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2345777778888888888888888887764 1122 34577888888999999999999998887531
Q ss_pred --CCCC-ChhHHHHHhhHhhhcC------ChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 553 --NVEP-DLKHYGCMVDLLGRAG------QLEDAEEVIRSMPMK-A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 553 --~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
...+ ....+..+...+...+ .+.++...++..... | ...++..+..++...|++++|..+++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1233 3444444444443333 344444455554422 2 45678889999999999999999999998753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-09 Score=86.29 Aligned_cols=131 Identities=13% Similarity=0.190 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+. .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 45667777778888888888888887754 446667777888888888888888888888754 45 56778888888
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 888899999998888875 33467788888888999999999999999998888763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=93.35 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=78.2
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+...|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4566 56667777777788888888888887765 33467777777778888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|++.|+++++..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=97.41 Aligned_cols=160 Identities=10% Similarity=-0.012 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHH----------------HHHHhcccChHHHHHHHHHHhHhhc
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKL-NSITFIG----------------VLSTCCHAGLVDLGERYFKSMKSVY 552 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 552 (665)
+......+...|++++|+..|++..+. .| +...+.. +..++...|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 344556678899999999999999986 44 4556666 888999999999999999999964
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhccCCCCCchH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN--VEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.| +...+..+..+|...|++++|+..++++. .+.+...|..++.++...|+ .+.+...++++....|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 78 78999999999999999999999999986 33478899999988876654 456677777776543322 236
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 628 VLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 628 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+.++.++...|++++|++.|+++++...
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 6788899999999999999999987654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-08 Score=91.43 Aligned_cols=180 Identities=9% Similarity=0.100 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH-
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGL----AMH---GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD- 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~- 539 (665)
+++++++.++.+... +.+..+|+.-...+ ... +++++++.+++++.+.. +-|...|+.-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 555555555555554 33344454433333 333 56667777777776653 446666666665666666665
Q ss_pred -HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC-HHH
Q 043580 540 -LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ------LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN-VEV 608 (665)
Q Consensus 540 -~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-~~~ 608 (665)
++++.++++.+. .| |...|+....++.+.|+ ++++++.++++. .+-+...|+.+...+.+.|+ .+.
T Consensus 163 ~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 163 AKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 677777777643 55 66666665555555554 666777766654 23366667777666666665 344
Q ss_pred HHHHHHHHhccC---CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 609 GERAAKSLAGLQ---PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 609 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+.+++++++ |.++.++..|+.+|.+.|+.++|.++++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555666666655 66667777777777777777777777777765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-09 Score=85.10 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+......|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..++++. .+.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46777788899999999999999999854 77 78899999999999999999999999986 44578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...|++++|+..++++++++|+++.++..|+.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999888887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=107.13 Aligned_cols=153 Identities=12% Similarity=0.000 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHH
Q 043580 500 HGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAE 578 (665)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 578 (665)
.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.. ...| +...+..++.+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887753 4457788888888899999999999999988 4577 6888888999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 043580 579 EVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA---GRWEDAFSIRKEMRDC 653 (665)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 653 (665)
+.++++. .+.+...+..+..++...|++++|...++++++++|+++..+..++.++... |++++|.+.++++++.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998875 3346788888889999999999999999999999999988899999999999 9999999999998886
Q ss_pred CCc
Q 043580 654 GMK 656 (665)
Q Consensus 654 ~~~ 656 (665)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=91.65 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLL 568 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 568 (665)
+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|+..+++..+. .| +...+..++.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 4455666677777777777776653 556677777777777777777777777777754 45 566777777777
Q ss_pred hhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 569 GRAGQLEDAEEVIRSMP-MKA-D----------------VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
...|++++|.+.++++. ..| + ...+..+..++...|++++|...+++++++.|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777664 112 1 2566677777777777777777777777777765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=106.23 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
..+..+...+...|++++|...|+++... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAE 512 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444445555555555555555555444 2333445555555555555555555555555532 223444555555555
Q ss_pred ccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 043580 534 HAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-VVIWGTLLAASRI 602 (665)
Q Consensus 534 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 602 (665)
+.|++++ ++.|+++.+. .| +...|..+..+|.+.|++++|++.++++. ..|+ ...+..+..++..
T Consensus 513 ~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555 5555555532 44 44455555555555555555555555554 2332 3344444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=87.74 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=79.3
Q ss_pred CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 553 NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 553 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.+.| +...+..+...+.+.|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4566 56666677777888888888888887765 33467777788888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|++.++++++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888877653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=98.45 Aligned_cols=193 Identities=8% Similarity=-0.069 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHh
Q 043580 454 DNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
...+..+...+...|++++|...|++.....| +...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677788888889999888888877634 56678888888999999999999999988763 44667888888899
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
...|++++|...|++..+. .| +...+...+....+..+...... .......++......+.. + ..|+.++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 9999999999999988754 44 22222222222222222112122 222233334444333322 2 3789999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADA-GRWEDAFSIRKEMRDC 653 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 653 (665)
.++++++++|++......+..++.+. +.+++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999888888888777777 7799999999888663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=85.98 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+..+...+...|++++|...|++..+. .| +..++..++.++...|++++|...+++.. .+.+...|..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34666677778888888888888888754 56 67788888888888999999999888875 33467888899999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 652 (665)
+...|++++|...+++++++.|+++..+..++.+ +...|++++|.+.+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999998887554444 8888999999999988754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=95.75 Aligned_cols=134 Identities=11% Similarity=0.015 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTL 596 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 596 (665)
+.+...+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 445567778888899999999999999999865 78 78899999999999999999999999987 44765544333
Q ss_pred H-HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 597 L-AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 597 ~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
. ..+...++.+.|+..++++++.+|+++..+..|+.+|...|++++|++.++++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3 3367788889999999999999999999999999999999999999999999988654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-08 Score=91.14 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HHHHHHHHHhcccChHHHHHHHHHHhHhhcC--CCCC--h
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNS------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN--VEPD--L 558 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 558 (665)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677888888888888877765322 22 1233455566778899999999988874311 1111 4
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD-----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------ 623 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------ 623 (665)
.+++.++..|...|++++|...++++. ..|+ ..++..++.+|...|++++|+..+++++++.++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478889999999999999999998865 1122 2578889999999999999999999998765431
Q ss_pred CchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043580 624 GPSRVLLSNIYADAGRWEDA-FSIRKEMRD 652 (665)
Q Consensus 624 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 652 (665)
...+..+|.+|...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45578899999999999999 787888765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-08 Score=92.11 Aligned_cols=220 Identities=8% Similarity=0.005 Sum_probs=157.3
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHc-cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIAS-SGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFE 475 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 475 (665)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887765321 11 111 46677777666553 456778899999988
Q ss_pred HHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHHHHHHHHHhcccChHHHHHH
Q 043580 476 VFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNI---KLN--SITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 476 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
.|.+.... ..+ ..+|+.+...|...|++++|+..+++..+.-. .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877654 111 23677888889999999999999988765311 121 3567888888988 99999999
Q ss_pred HHHHhHhhcCCC--C--ChhHHHHHhhHhhhcCChHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 043580 544 YFKSMKSVYNVE--P--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM----KAD----VVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 544 ~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.|++..+...-. + ...++..+..+|.+.|++++|+..++++.. .+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987542111 1 146788899999999999999999998751 122 2356677777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCChhHHHH
Q 043580 612 AAKSLAGLQPSHGPS-----RVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 645 (665)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99987654 33445544 5677766665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-09 Score=90.43 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=68.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH-hhhcCCh-
Q 043580 498 AMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL-LGRAGQL- 574 (665)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 574 (665)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34455666666666665543 334555666666666666666666666666543 34 45555555555 5555665
Q ss_pred -HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 575 -EDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 575 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
++|...++++. .+.+...+..+..++...|++++|...+++++++.|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 66666665554 2224555555666666666666666666666666666544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-08 Score=90.34 Aligned_cols=160 Identities=9% Similarity=-0.084 Sum_probs=119.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHH
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNI-KLNS----ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGC 563 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 563 (665)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776421 1221 12334666677788999999999998863111223 236888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-------MK-A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRV 628 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 628 (665)
++.+|...|++++|...++++. .. + ...++..++.+|.+.|++++|+..+++++++.+.. +..+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988875 11 1 23477889999999999999999999998776543 45688
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 043580 629 LLSNIYADAGR-WEDAFSIRKEMRD 652 (665)
Q Consensus 629 ~l~~~~~~~g~-~~~A~~~~~~~~~ 652 (665)
.+|.+|...|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-06 Score=80.74 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=166.0
Q ss_pred CchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---C
Q 043580 399 QPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG--TLKEGRWAHEYVLNNSITLNDNLSAAIIDMY----AKC---G 468 (665)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 468 (665)
..++|+.+++.++. +.|+..| ++.--..+...+ +++++...++.++..+.+ +..+++.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 34567777777776 3454443 344444555555 777777777777665432 223333222222 333 7
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh------HH
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN--LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL------VD 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~ 539 (665)
++++++.+++.+... +.+..+|+.-...+...|+++ ++++.++++++.. +-|...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 889999999998886 556778888888888888888 9999999999875 5577778776666666666 89
Q ss_pred HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043580 540 LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLED-AEEVIRSMPM-----KADVVIWGTLLAASRIHGNVEVGERA 612 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 612 (665)
++++.++.+... .| |...|+.+..++.+.|+..+ +.++++++.. ..++..+..++.++.+.|+.++|+++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999854 88 89999999999988887555 5567777652 34788899999999999999999999
Q ss_pred HHHHhc-cCCCCCchHHHHHH
Q 043580 613 AKSLAG-LQPSHGPSRVLLSN 632 (665)
Q Consensus 613 ~~~~~~-~~p~~~~~~~~l~~ 632 (665)
++++.+ .+|-...++...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999986 89988887766554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=79.05 Aligned_cols=101 Identities=9% Similarity=-0.065 Sum_probs=89.4
Q ss_pred CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CCchHHH
Q 043580 555 EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS--HGPSRVL 629 (665)
Q Consensus 555 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 629 (665)
.| +...+..++..+...|++++|...++++. .+.+...|..+..++...|++++|...++++++..|+ +...+..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45 56778888899999999999999998875 3346788889999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCCC
Q 043580 630 LSNIYADA-GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 630 l~~~~~~~-g~~~~A~~~~~~~~~~~~ 655 (665)
++.+|... |++++|++.++++.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 999999999999987654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=81.58 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|...|++..+ ..| +...+..++.+|...|++++|...++++. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344566667777777777777777777763 355 66777777777777788888887777765 334567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
.++...|++++|...++++++.+|++...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=81.55 Aligned_cols=97 Identities=8% Similarity=-0.061 Sum_probs=67.8
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455566666677777777777776654 23356667777777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 043580 636 DAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~ 654 (665)
..|++++|++.++++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 7777777777777776643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-08 Score=88.98 Aligned_cols=185 Identities=11% Similarity=-0.001 Sum_probs=136.8
Q ss_pred hcCCHHHHHHHHHHchhCCC-CcchHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCh---------------
Q 043580 466 KCGSINTAFEVFYHIRDRTT-SVSPWNAI-------ICGLAMHGDANLTLKIYSDLEKRNIKLNS--------------- 522 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------------- 522 (665)
..++...|.+.|.++....| ....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888888888888887644 35577766 4555555555555555555444 22211
Q ss_pred -------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCH----H
Q 043580 523 -------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADV----V 591 (665)
Q Consensus 523 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 591 (665)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2234456778889999999999999874 3573336667778889999999999999877644433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQ--PS-HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+..+..++...|++++|+..|+++..-. |. .+...+.++.++.++|+.++|...|+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67888899999999999999999997533 54 445688999999999999999999999988654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=87.14 Aligned_cols=157 Identities=9% Similarity=-0.004 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-hcc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLST-CCH 534 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 534 (665)
...+...+...|++++|...|++.... +.+...+..+...+...|++++|+..+++..... |+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344566777888888888888887766 4456677888888888888888888888876643 344333222211 111
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCCHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD---VVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A 609 (665)
.+....|...+++..+. .| +...+..+..++...|++++|...++++. ..|+ ...+..++.++...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223467778777754 67 67888888888888899999988888765 3443 45788888888888888888
Q ss_pred HHHHHHHhc
Q 043580 610 ERAAKSLAG 618 (665)
Q Consensus 610 ~~~~~~~~~ 618 (665)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=82.53 Aligned_cols=101 Identities=7% Similarity=-0.064 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+.+.|++++|...|+++... .| ++..|..+..+|...|++++|+..|+++. .+.++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3457778888899999999999999999954 78 78999999999999999999999999986 334678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.++...|++++|+..+++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999865
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=96.57 Aligned_cols=197 Identities=8% Similarity=-0.009 Sum_probs=151.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 431 SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
..|++++|.++++...+.... . .+...++++.|...|... ...|...|++++|...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHH
Confidence 467888999999888654211 1 111257888888887654 45788899999999999
Q ss_pred HHHHHcCC---CC--ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCC--CC--ChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 511 SDLEKRNI---KL--NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNV--EP--DLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 511 ~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
.+..+... .+ -..+|..+...|...|++++|+..|++..+.+.- .| ...++..+..+|.. |++++|+..+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 88775421 11 1347888889999999999999999988754211 12 24578889999988 9999999999
Q ss_pred HhCCC------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCChhHHHHHH
Q 043580 582 RSMPM------KA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP------SRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 582 ~~~~~------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
++... .+ ...++..+...+...|++++|+..+++++++.|+... .+..++.++...|++++|++.+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88751 11 1467888999999999999999999999998776543 4667788888999999999999
Q ss_pred HHHH
Q 043580 648 KEMR 651 (665)
Q Consensus 648 ~~~~ 651 (665)
++++
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9997
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-08 Score=79.90 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|...+++.... .| +...+..++.++...|++++|...+++.. .+.+...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 3456667777778888888888888888754 45 67778888888888888888888888775 334577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChh
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWE 641 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 641 (665)
.++...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999998999999999888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=96.07 Aligned_cols=127 Identities=10% Similarity=-0.058 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----------------hhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..+..+...+.+.|++++|+..|++..+. .|+ ..+|..+..+|.+.|++++|+..++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555666666666666665533 342 4788889999999999999999999886
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDA-FSIRKEMRD 652 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 652 (665)
.+.+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| .+.|++|.+
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888999999999999999999999999999999999999999999999999999 556776643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-09 Score=86.29 Aligned_cols=106 Identities=9% Similarity=-0.042 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|+++... .| +...|..+..+|...|++++|+..++++. .+.++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4456777788888999999999999998854 67 78888999999999999999999999876 334678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
.++...|++++|+..+++++++.|+++.....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 99999999999999999999999998875433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-08 Score=77.65 Aligned_cols=114 Identities=14% Similarity=0.201 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLA 598 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 598 (665)
...+..+...+...|++++|.++++++.+. .| +..++..++.++...|++++|...++++. .+.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 456666777777788888888888887754 45 56777778888888888888888887765 3346777888888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888999999999999999889988888888888776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-07 Score=83.90 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
+..+...+...|++++|...|++... ++...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 44566777788888888888887764 667778888888888888888888888887764 446667777888888888
Q ss_pred hHHHHHHHHHHhHhhcC-------------CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 043580 537 LVDLGERYFKSMKSVYN-------------VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASR 601 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 601 (665)
++++|.+.|++..+... ..| ....+..++.+|...|++++|...++++. ..|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------- 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP----------- 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------
Confidence 88888888888775311 111 22677778888888888888888887764 33443
Q ss_pred hcCCHHHHHHHHHHHhccCC
Q 043580 602 IHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~p 621 (665)
..+..+.|...+++.....|
T Consensus 155 ~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp GGGHHHHHHHHHHTTCCCCC
T ss_pred ccchHHHHHHHHHhcccccc
Confidence 22345556555555544433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-06 Score=83.68 Aligned_cols=373 Identities=11% Similarity=0.017 Sum_probs=208.5
Q ss_pred ccC-CHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHhhcCC-hhHHHHHHHH
Q 043580 202 VCS-SLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPS--KDVVSWGTMIDGYLQVER-LSEALTMYRA 277 (665)
Q Consensus 202 ~~g-~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 277 (665)
+.| +++.|..+|+.+.+ .+-. |+++.+..+|++... |++..|..-+....+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 345 36666666665543 1111 889999999988775 777777777777666653 4556777877
Q ss_pred HHHC-CCCC-CHHHHHHHHHHhh----cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 043580 278 MLCD-GIAP-NDVMIVDLISACG----RAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKD 351 (665)
Q Consensus 278 m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 351 (665)
.... |..| +...|...+..+. ..++.+.+..+|+..+.........++......-.. .+...+..++..
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~---- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGD---- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHH----
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHH----
Confidence 7654 4333 5566666666554 246677888888888873222122222222221111 112222222211
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHhCC-C------chHHHHHHHHHHHCCCCCChh
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQ----KRDVYSWSAMISGYAQNE-Q------PNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~m~~~~~~p~~~ 420 (665)
.. +.+..|..+++.+. ..+...|...+.--...+ . .+.+..+|+++.... +-+..
T Consensus 149 -----------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~ 214 (493)
T 2uy1_A 149 -----------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEE 214 (493)
T ss_dssp -----------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred -----------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHH
Confidence 00 11222222222211 112334444443322211 1 234567788877643 33455
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHHchhC----------CCCcch
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTA-FEVFYHIRDR----------TTSVSP 489 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~----------~~~~~~ 489 (665)
.+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++. ..+.+..... ......
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 6666666667788888888888888877 333332222 2221111111 1111111000 011234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc-cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH-AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
|...+....+.++.+.|..+|++. ... ..+...|...+..-.. .++.+.|..+|+...+.+ | ++..+...++.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~~~~~~~~yid~ 363 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CCCHHHHHHHHHH
Confidence 666667777778899999999988 321 2244444432222222 336899999999998763 4 45556667777
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 568 LGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
..+.|+.+.|..+++++. .....|...+.--...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999984 3567788888777788999999998888863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=80.00 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=83.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
.+..++..+.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567788889999999999999886 3347888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 043580 638 GRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 638 g~~~~A~~~~~~~~~~~ 654 (665)
|++++|++.++++++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=80.80 Aligned_cols=161 Identities=6% Similarity=-0.153 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043580 453 NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHG----DANLTLKIYSDLEKRNIKLNSITFIGV 528 (665)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l 528 (665)
++..+..+...|...+++++|...|++.... .++..+..|...|.. + ++++|+++|++..+.| +...+..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3444555666666677777777777776664 345566666666666 5 7888888888887754 55667777
Q ss_pred HHHhcc----cChHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhh----cCChHHHHHHHHhCCCC-CCHHHHHHH
Q 043580 529 LSTCCH----AGLVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGR----AGQLEDAEEVIRSMPMK-ADVVIWGTL 596 (665)
Q Consensus 529 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l 596 (665)
...|.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|...+++.... +++..+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 777776 78899999999988743 443 6788888888887 78899999999887633 566677788
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHhccCC
Q 043580 597 LAASRIH-G-----NVEVGERAAKSLAGLQP 621 (665)
Q Consensus 597 ~~~~~~~-g-----~~~~A~~~~~~~~~~~p 621 (665)
...|... | +.++|...++++.+...
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8877653 3 89999999999887643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-07 Score=79.56 Aligned_cols=204 Identities=12% Similarity=-0.051 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CC-hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--hHHHHHH
Q 043580 386 SWSAMISGYAQNEQPNMALELFHGMVDAGVK-PN-EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND--NLSAAII 461 (665)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 461 (665)
.+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...++.+.+....... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 4445556666677777777777777664211 11 134445555666666666666666666554322111 1222223
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHhcccChHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSI-TFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 540 (665)
.++...+.. . ...|..+...+...|++++|+..|+++++. .|+.. .......
T Consensus 86 ~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~---------- 138 (225)
T 2yhc_A 86 LTNMALDDS-----A----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR---------- 138 (225)
T ss_dssp HHHHHHHC-----------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------
T ss_pred HHHHhhhhh-----h----------hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------
Confidence 333222110 0 001112223334567889999999998875 44432 2221111
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKS 615 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 615 (665)
...+...+. .....++..|.+.|++++|+..++++. ..|+ ...+..+..++.+.|+.++|+..+++
T Consensus 139 l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 139 LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 001111111 122356778889999999999999876 2243 25688889999999999999999999
Q ss_pred HhccCCCCCc
Q 043580 616 LAGLQPSHGP 625 (665)
Q Consensus 616 ~~~~~p~~~~ 625 (665)
+....|++..
T Consensus 210 l~~~~~~~~~ 219 (225)
T 2yhc_A 210 IAANSSNTLE 219 (225)
T ss_dssp HHHCCSCCCC
T ss_pred HHhhCCCchh
Confidence 9998888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-09 Score=93.57 Aligned_cols=127 Identities=12% Similarity=-0.042 Sum_probs=90.9
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-C----------------hhHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-D----------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
+..+...+...|++++|+..|++..+. .| + ..++..+..+|...|++++|+..++++.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDF---FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444555555555555555555532 22 2 2678888889999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 043580 586 MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF-SIRKEMRDCG 654 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 654 (665)
.+.+...+..+..++...|++++|+..++++++++|+++..+..++.++...++.+++. ..++.+...|
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33477889999999999999999999999999999999999999999999999988887 6666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=79.97 Aligned_cols=95 Identities=5% Similarity=-0.091 Sum_probs=65.8
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP-------SRVL 629 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 629 (665)
..+..++..+.+.|++++|++.|+++. .+.+...|..+..+|...|++++|+..++++++++|+... ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345566777777777777777777664 2235666777777777777777777777777777776653 3556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+|.+|...|++++|++.|++.++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677777777777777777777653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-08 Score=83.44 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|++..+. .| +...|..+..+|...|++++|+..++++. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4557788888889999999999999998854 67 78888899999999999999999998876 334688888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
.++...|++++|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999886655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.5e-08 Score=78.72 Aligned_cols=97 Identities=7% Similarity=-0.042 Sum_probs=61.1
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 45555666666666666666666666553 2234556666666666666666666666666666666666666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 043580 635 ADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~ 653 (665)
...|++++|.+.++++++.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-06 Score=81.56 Aligned_cols=160 Identities=11% Similarity=-0.005 Sum_probs=123.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDRTTSVS-------PWNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIG 527 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 527 (665)
.+..+...|++++|...+++.....+... .+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999999887633222 2234566667778999999999999984322 22 236888
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhc----CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CCC-CHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVY----NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MKA-DVVIWG 594 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~ 594 (665)
+...|...|++++|..+|+++.+.. +..+ ...++..++.+|.+.|++++|...+++.. ..+ -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988522 1222 24578899999999999999999998875 112 267889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhcc
Q 043580 595 TLLAASRIHG-NVEVGERAAKSLAGL 619 (665)
Q Consensus 595 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 619 (665)
.++.++.+.| ++++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 479999999999754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=82.18 Aligned_cols=122 Identities=7% Similarity=0.040 Sum_probs=101.4
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH-
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA-SRIHGNV- 606 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~- 606 (665)
+...|++++|...+++..+. .| +...+..++.+|...|++++|...++++. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678889999999988854 56 78889999999999999999999999876 33467788888888 7788998
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 607 -EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 607 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
++|+..++++++.+|+++..+..++.+|...|++++|.+.++++++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999887554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=82.26 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLA 598 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 598 (665)
...+..+...+...|++++|...|+++... .| +...|..+..+|...|++++|+..++++. .+.++..+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345666777888899999999999998854 67 78888889999999999999999998876 3346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
++...|++++|+..+++++++.|+++.......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999999999887655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=82.76 Aligned_cols=131 Identities=9% Similarity=-0.042 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCC-C---
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKA-D--- 589 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~--- 589 (665)
...+..+...+...|++++|...+++..... +..| ...++..+...|...|++++|...+++.. ..+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3445555555555566666555555554311 1122 34455556666666666666666665543 111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 590 -VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG------PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 590 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...+..+...+...|++++|...+++++++.+... ..+..++.++...|++++|.+.++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23455566666667777777777776664432211 1135667777777777777777776655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-06 Score=79.52 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHchhC-CCCcchHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH------
Q 043580 469 SINTAFEVFYHIRDR-TTSVSPWNAIICGLAMH-G-DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD------ 539 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~------ 539 (665)
.+++++++++.+... +.+..+|+.-...+... + +++++++.++++.+.. +-|...|+.-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 366666666666665 33445566555555554 5 6677777777777653 345566665555555545444
Q ss_pred --HHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC-------hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-
Q 043580 540 --LGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ-------LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNV- 606 (665)
Q Consensus 540 --~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~- 606 (665)
++++.++++.+. .| |...|+....++.+.++ ++++++.++++. .+-+...|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 777777777754 56 67777777766666665 567777776664 333667777766666665542
Q ss_pred -------------------HHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 607 -------------------EVGERAAKSLAGLQ------PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 607 -------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
........++.... +..+.+...|+.+|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22333333333222 45566688999999999999999999999864
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=74.58 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+..+...+...|++++|...+++.... .| +...+..++.++...|++++|...++++. .+.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555566666666666665533 34 45555555555555566666665555543 22244555555555
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSN 632 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 632 (665)
+...|++++|...++++++..|+++..+..++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555566666666666665555555555444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=72.56 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=85.2
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778888899999999999998875 33477888888999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 043580 636 DAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|++++|.+.++++.+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=76.00 Aligned_cols=110 Identities=9% Similarity=-0.101 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAA 599 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 599 (665)
..+......+.+.|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..++++. .+.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777788888899999988888854 66 67888888999999999999999888875 33467888889999
Q ss_pred HHhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 043580 600 SRIHGNVEVGERAAKSLAGLQ------PSHGPSRVLLSNIYA 635 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 635 (665)
+...|++++|+..++++++++ |++......+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 877777776665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=78.65 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=68.0
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..+...+...|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45566666777777777777777777664 2235666777777777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~ 654 (665)
...|++++|++.|+++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 77777777777777776643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=74.44 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=89.6
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
...+..++..+...|++++|.+.++++. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5778889999999999999999999986 33468889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 043580 636 DAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 636 ~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|++++|.+.++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-05 Score=80.68 Aligned_cols=353 Identities=9% Similarity=-0.027 Sum_probs=209.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccc-hhhHHHHHHHHHHh-CCC-CchhHHHHHHHHHH----hcCCh
Q 043580 266 ERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMA-FGEGLQIHSIIVKA-GFD-CYDFIQATIIHFYA----ACGRI 338 (665)
Q Consensus 266 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~ 338 (665)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |.. .+..++...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999873 5788888888877766653 45667778777764 433 35566666666544 24567
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHH---hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 043580 339 NLARLQFELGIKDHIASWNALIAGFI---RNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
+.+..+|++.+......+..+-..|. .......+..++... . +.+..|..+++.+...--
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~---------------~--~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT---------------L--PIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH---------------h--HHHHHHHHHHHHHHHHHh
Confidence 77888887765422222222222221 111122222222211 1 123334444443332100
Q ss_pred CCChhHHHHHHHHHHcc--C-----cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc
Q 043580 416 KPNEITMVSVFCAIASS--G-----TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS 488 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 488 (665)
..+...+...+.--... + ..+.+..+++.++... +.+..++...+..+.+.|+.+.|..++++.... |...
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 01222333333222111 1 1345667888887753 445677777888888999999999999999887 6544
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRN---------IKL---NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP 556 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 556 (665)
.... .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+++ .. -.+
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~ 317 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGV 317 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC
Confidence 3222 22222122222 22222210 011 1245666666666778899999999998 32 112
Q ss_pred ChhHHHHHhhHhhhcC-ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAG-QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+...|...+..-...+ +.+.|..+|+... .+.++..|...+.-..+.|+.+.|..+++++ +.....+......
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4455544443333334 6999999998875 3234566777777778899999999999998 3345556677766
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 043580 634 YADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 634 ~~~~g~~~~A~~~~~~~~~ 652 (665)
-...|+.+.+.+++++.++
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6778999999999998875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.6e-07 Score=83.73 Aligned_cols=163 Identities=10% Similarity=-0.015 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHH
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVS-------PWNAIICGLAMHGDANLTLKIYSDLEKRNI---KLN--SIT 524 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~ 524 (665)
+...+..+...|++++|.+.+.......+... .+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34466778889999999999887776533221 233455667788899999999999876421 111 347
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-----hhHHHHHhhHhhhcCChHHHHHHHHhCCC-----C--C-CHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-----LKHYGCMVDLLGRAGQLEDAEEVIRSMPM-----K--A-DVV 591 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~--~-~~~ 591 (665)
++.+...|...|++++|..+++++.+.....|+ ..++..++.+|...|++++|...+++... . . -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999999998742222332 25888899999999999999999988751 1 1 267
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 043580 592 IWGTLLAASRIHGNVEVG-ERAAKSLAGL 619 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 619 (665)
+|..++.++.+.|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788999999999999999 8889988753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=76.73 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=90.6
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. ..| +...+..+..++...|++++|+..++++++..|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 57788889999999999999999999975 334 7888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.+.++++++...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999987643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=77.34 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL-------QPSHGPSR----VLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
..|..+..++.+.|++++|+..+++++++ +|++...| +.+|.++...|++++|++.|+++++.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888899999999999988888 99999999 99999999999999999999999774
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-07 Score=76.05 Aligned_cols=106 Identities=9% Similarity=-0.061 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTL 596 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 596 (665)
..+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++.. .+.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444445555555555555555554 22343 3444444444455555555555444433 11234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
..++...|++++|...++++++++|++...+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44445555555555555555555554444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-07 Score=74.51 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=86.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKAD----VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
+...+..++..+...|++++|...+++.. ..|+ ...|..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 67788888999999999999999998875 4566 677888888899999999999999999999999988899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+|...|++++|.+.++++++...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=73.99 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=90.5
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..++..+...|++++|...++++. .+.+...+..+..++...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 56778889999999999999999999875 3347888999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
...|++++|.+.++++.+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-07 Score=74.42 Aligned_cols=112 Identities=9% Similarity=-0.145 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 043580 519 KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGT 595 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 595 (665)
+.+...+..+...+...|++++|...|++..+. .| +...+..++.++...|++++|...++++. .+.+...|..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 345677888888888889999999998888854 56 67888888999999999999999888875 3346788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHH
Q 043580 596 LLAASRIHGNVEVGERAAKSLAGLQPS-----HGPSRVLLSNI 633 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 633 (665)
+..++...|++++|+..+++++++.|+ +......+..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 44444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-06 Score=73.58 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDL 567 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 567 (665)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 35556666777777777777777777653 445667777777777788888888888877754 45 56777778888
Q ss_pred hhhcCChHHHHHHHHhCC--CCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhc
Q 043580 568 LGRAGQLEDAEEVIRSMP--MKADVVIWGTLL--AASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 618 (665)
+...|++++|...++++. .+.+...+..+. ..+...|++++|+..+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887765 223444553333 336677888888888877643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-07 Score=90.47 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=77.9
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
..+|..+..+|.+.|++++|+..++++. .+.+...|..+..+|...|++++|+..++++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999998876 34478889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHH
Q 043580 636 DAGRWEDAFS-IRKEMR 651 (665)
Q Consensus 636 ~~g~~~~A~~-~~~~~~ 651 (665)
..|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988774 455443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.5e-07 Score=73.35 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-Ch---hHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C---HHHHHHHHH
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DL---KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D---VVIWGTLLA 598 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 598 (665)
+...+...|++++|...|+++.+. .| +. ..+..++.++...|++++|...++++. ..| + +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555566666666666665543 33 22 345555555555666666665555543 112 2 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 599 ASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
++...|++++|...++++++..|+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555566666666666655555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-07 Score=88.30 Aligned_cols=148 Identities=8% Similarity=-0.085 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHh
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLL 568 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (665)
.+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ..+|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3455555566666677777766666653 333221 222333333332211 13788899999
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH-HHhcCChhHHHH
Q 043580 569 GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI-YADAGRWEDAFS 645 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 645 (665)
.+.|++++|+..++++. .+.+...|..+..+|...|++++|+..++++++++|+++..+..|+.+ ....+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 334788999999999999999999999999999999999999999888 445578889999
Q ss_pred HHHHHHhCCCc
Q 043580 646 IRKEMRDCGMK 656 (665)
Q Consensus 646 ~~~~~~~~~~~ 656 (665)
.|+++......
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 99998776543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=93.23 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=100.5
Q ss_pred HHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 043580 528 VLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHG 604 (665)
Q Consensus 528 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 604 (665)
+...+.+.|++++|++.+++..+. .| +...+..++.+|.+.|++++|++.++++. ..| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344567789999999999999864 77 68899999999999999999999999876 334 6788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNI--YADAGRWEDAFSIRK 648 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 648 (665)
++++|+..+++++++.|++...+..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 889999999999997
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=75.33 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=43.7
Q ss_pred cChHHHHHHHHHHhHhhcCC-CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNV-EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|+..++++. .+.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555521 10 23 34445555555555555555555555543 2223445555555555555555555
Q ss_pred HHHHHHhccCCCCCc
Q 043580 611 RAAKSLAGLQPSHGP 625 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~ 625 (665)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=82.97 Aligned_cols=137 Identities=12% Similarity=-0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC--hhHHHHHhhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD--LKHYGCMVDL 567 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 567 (665)
...+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344667788889999999999888764 354445566666788899999999999866532 1121 3467788999
Q ss_pred hhhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 568 LGRAGQLEDAEEVIRSMPMK---A--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
+...|++++|+..|++.... | ....+.....++.+.|+.++|...|+++...+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999988522 3 3457778888999999999999999999999998 66555553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-08 Score=84.37 Aligned_cols=123 Identities=7% Similarity=-0.109 Sum_probs=94.8
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C----------------H
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D----------------V 590 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~ 590 (665)
......|+++.+.+.++..... .+ ....+..+...+...|++++|+..++++. ..| + .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ----------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444556666666666544432 23 45667788999999999999999999875 222 2 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 78889999999999999999999999999999999999999999999999999999999987643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.4e-05 Score=69.72 Aligned_cols=231 Identities=11% Similarity=0.038 Sum_probs=154.9
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhH-HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEIT-MVSVFCAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC-G-SI 470 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 470 (665)
.+.+..++|+++++++... .|+..| ++.--..+...+ .++++..+++.++.... -+..+++.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCCh
Confidence 3344556777777777763 444433 333334444455 47777777777776542 2334454444444444 5 77
Q ss_pred HHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh----
Q 043580 471 NTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDAN--------LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL---- 537 (665)
Q Consensus 471 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 537 (665)
++++++++++... +.+..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8888999888886 455667776665555555555 8999999999875 5577788888777777765
Q ss_pred ---HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCCh--------------------HHHHHHHHhCCC-------
Q 043580 538 ---VDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQL--------------------EDAEEVIRSMPM------- 586 (665)
Q Consensus 538 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~------- 586 (665)
++++++.++++... .| |...|+.+-..+.+.|+. .+..+...++..
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78889999888854 78 788888877777766653 344455555542
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCCchHHHHHH
Q 043580 587 -KADVVIWGTLLAASRIHGNVEVGERAAKSLA-GLQPSHGPSRVLLSN 632 (665)
Q Consensus 587 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 632 (665)
.+++..+..++..|...|+.++|.++++.+. +.+|-...++...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2577888899999999999999999999986 778876665555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.1e-07 Score=71.06 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=75.6
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAAS 600 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 600 (665)
.+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|+..++++. ..| +...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445566777888888999888888854 67 78888888888889999999999888875 334 677888888889
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 601 RIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 601 ~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
...|++++|+..++++++++|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999987653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=78.20 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcC-----C----------CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYN-----V----------EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP- 585 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (665)
..+......+.+.|++++|+..|.+...... - .| +..+|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556666677777777777777777664200 0 12 23445555555555666666665555543
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 586 -MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 586 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
.+.+...|..++.++...|++++|...++++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222455555555555566666666666666666655555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-06 Score=84.80 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=132.8
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCc------------------chHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTTSV------------------SPWNAIICGLAMHGDANLTLKIYSDLEKRN-IKLNS 522 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~ 522 (665)
..+.+.|++++|.+.|..+....++. .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666777777666665542211 125667788888888888888887766421 11121
Q ss_pred ----HHHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-------CC
Q 043580 523 ----ITFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-------MK 587 (665)
Q Consensus 523 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 587 (665)
.+.+.+...+...|+++.|..+++...... +..+ ...++..++..|...|++++|..+++++. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 133344445566788999998888775421 2333 35677889999999999999999988764 12
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 588 A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-------GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 588 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+ ....+..++..|...|++++|..+++++....+.. ...+..++..+...|++++|.+.+.++.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 24678888899999999999999999997654322 23366778888899999999999888865
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-07 Score=73.62 Aligned_cols=96 Identities=7% Similarity=-0.001 Sum_probs=72.5
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH-------GPSRVL 629 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 629 (665)
..+..++..+...|++++|...++++. .+.+...+..+..++...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777777777777777777764 33456777777777888888888888888888777765 666778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++.+|...|++++|.+.++++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=82.28 Aligned_cols=110 Identities=8% Similarity=-0.157 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLL 597 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 597 (665)
+...+..+...+...|++++|+..|++..+. .| +...|..++.+|.+.|++++|+..++++. ..| +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777778888888888888888888754 66 67788888888888888888888888865 334 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
.++...|++++|+..++++++++|+++..+..+++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 888888888888888888888888776544433333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-06 Score=84.20 Aligned_cols=171 Identities=8% Similarity=-0.057 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccC
Q 043580 468 GSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGD----------ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAG 536 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 536 (665)
...++|.+.++.+....| +..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344678888888888644 45577776666766666 899999999999875 557788888888888888
Q ss_pred --hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-------
Q 043580 537 --LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG-QLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIH------- 603 (665)
Q Consensus 537 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 603 (665)
+++++++.++++.+. .| |...|+.-..++.+.| .++++++.++++. ..| +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999965 78 8889998888888888 8999999999987 334 788898888887663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhH
Q 043580 604 -------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWED 642 (665)
Q Consensus 604 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 642 (665)
+.++++++.+++++.++|++..+|..++.++...+++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-06 Score=73.78 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=48.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhc---CCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----H
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVY---NVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----V 590 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~ 590 (665)
.+..+...+...|++++|...+++..+.. +-.| ....+..+..++...|++++|...+++.. ..++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 44444555555555555555555544321 1111 13345555555555666666655555543 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.++..+..++...|++++|...+++++++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23455556666666666666666666544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=75.56 Aligned_cols=186 Identities=8% Similarity=-0.007 Sum_probs=135.1
Q ss_pred hcCCH-HHHHHHHHHchhCCCC-cchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHHHHHHHHHhc
Q 043580 466 KCGSI-NTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGD----------ANLTLKIYSDLEKRNIKLNSITFIGVLSTCC 533 (665)
Q Consensus 466 ~~~~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 533 (665)
+.|.+ ++|++.++.+....|+ ..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34444 4678888888776443 3455554333333332 567888888888764 557777777777776
Q ss_pred ccC--hHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC-hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc----
Q 043580 534 HAG--LVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ-LEDAEEVIRSMP--MKADVVIWGTLLAASRIH---- 603 (665)
Q Consensus 534 ~~~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 603 (665)
..+ ++++++.+++++.+. .| |...|+.-..++...|. ++++++.++++. ..-+...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 666 478889999888854 77 78888887777777787 588888888876 334677787777776655
Q ss_pred ----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCC
Q 043580 604 ----------GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA-----------GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 604 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 655 (665)
+.++++++.+++++..+|++..++..+..++... +.++++++.++++++...
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4578899999999999999999988777777766 457889999988887543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-05 Score=72.93 Aligned_cols=181 Identities=9% Similarity=0.015 Sum_probs=107.6
Q ss_pred HHHHHHHHHHchhC-CCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh-HHHHHHHH
Q 043580 470 INTAFEVFYHIRDR-TTSVSPWNAIICGLAMHG--DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL-VDLGERYF 545 (665)
Q Consensus 470 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 545 (665)
++++..+++.+... +.+..+|+.-...+...+ ++++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555554 344556665555555555 3567777777777654 4455666655555555565 46677777
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhc--------------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-----
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRA--------------GQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH----- 603 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 603 (665)
+++.+. .| |...|+....++.+. +.++++++.++++. .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777643 55 566666555554443 34666777666664 333566666555554443
Q ss_pred ------CCHHHHHHHHHHHhccCCCCCchHHHHHHH---HHhcCChhHHHHHHHHHHhCC
Q 043580 604 ------GNVEVGERAAKSLAGLQPSHGPSRVLLSNI---YADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 604 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.++++++.+++++++.|++.-.+..++.+ ....|..++..+.+.++++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 346788888888888888774333333222 123567778888888877644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=68.16 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC---CHHHHHH
Q 043580 521 NSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA---DVVIWGT 595 (665)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~ 595 (665)
+...+..+...+...|++++|...+++..+. .| +...+..++.++...|++++|...++++. ..| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3445666677777778888888888877754 45 56777778888888888888888887765 223 4777888
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhccCCCCC
Q 043580 596 LLAASRIH-GNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 596 l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+..++... |++++|...++++++..|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888888765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-07 Score=86.24 Aligned_cols=93 Identities=8% Similarity=-0.041 Sum_probs=82.4
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
..| +..+|..+..+|.+.|++++|+..++++. ..| +...|..+..++...|++++|+..++++++++|++...+..|
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345 67889999999999999999999999876 334 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHH
Q 043580 631 SNIYADAGRWEDAFSI 646 (665)
Q Consensus 631 ~~~~~~~g~~~~A~~~ 646 (665)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-07 Score=77.05 Aligned_cols=96 Identities=8% Similarity=-0.004 Sum_probs=71.6
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-M------------------KA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGL 619 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 619 (665)
.+...+..+.+.|++++|+..|++.. . .| ....|..+..++.+.|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34556677778888888888877764 1 11 2356777777788888888888888888888
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 620 QPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 620 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+|+++..+..+|.+|...|++++|.+.|+++++...
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 888888888888888888888888888888776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=73.85 Aligned_cols=130 Identities=14% Similarity=0.035 Sum_probs=91.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC----hhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCC----HH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD----LKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKAD----VV 591 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~ 591 (665)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666677777777777666543111111 2466677778888888888888877764 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.+..+..++...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66777888889999999999999887654322 345778999999999999999999998763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=69.02 Aligned_cols=96 Identities=5% Similarity=0.022 Sum_probs=67.5
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C----CCC----HHHH
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M----KAD----VVIW 593 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~ 593 (665)
.+..+...+.+.|++++|+..|++..+. .| +...|..+..+|...|++++|++.+++.. . .++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4555666677777777777777777643 56 56667777777777777777777776654 1 111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
..++.++...|++++|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67778888889999999999998887775
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-07 Score=72.50 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=69.4
Q ss_pred hcCChHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 570 RAGQLEDAEEVIRSMPMK----A-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
..|++++|+..++++... | +...+..++.++...|++++|+..++++++++|+++..+..++.+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 467888999999887632 4 45678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 043580 645 SIRKEMRDCG 654 (665)
Q Consensus 645 ~~~~~~~~~~ 654 (665)
+.++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=68.67 Aligned_cols=111 Identities=5% Similarity=-0.031 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C----CCC----HHH
Q 043580 523 ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M----KAD----VVI 592 (665)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~ 592 (665)
..+..+...+...|++++|...|++..+. .| +...+..++.+|...|++++|...++++. . .++ ...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34555666667777777777777777653 44 56667777777777777777777777764 1 122 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA 637 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 637 (665)
+..+..++...|++++|...++++++..| ++.....++.+....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 77888888899999999999999998888 455566666554433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-06 Score=67.37 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=74.9
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP-MKAD-V---VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH---GPSRVLLSN 632 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 632 (665)
+..++..+...|++++|...++++. ..|+ . ..+..++.++...|++++|+..++++++..|++ +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3456677888889999988888875 2232 2 477778888888899999999999998888888 666888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 043580 633 IYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|...|++++|++.++++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999988887753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-06 Score=80.34 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDRTTSV----------------SPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLN 521 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 521 (665)
..+...|.+.|++++|...|++.....|+. ..|..+..++.+.|++++|+..+++.++.. +.+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 344444555555555555555544442222 344445555555555555555555555542 234
Q ss_pred hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHH
Q 043580 522 SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDA 577 (665)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (665)
...+..+..+|...|++++|+..|+++.+. .| +...+..+..++...|++++|
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555532 44 444455555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-07 Score=72.53 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=79.2
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------GPSRV 628 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 628 (665)
+...+..+...+...|++++|++.++++. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667788888889999999999998875 33477889999999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKE 649 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~ 649 (665)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999999988888776643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.3e-06 Score=64.45 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.++..|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357778888888999999999999999999999999999999999999999999999999888764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.5e-06 Score=67.14 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=86.5
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 610 (665)
.+++++|.++|++..+. + .|+ .. |...|...+..++|.+.+++.....++..+..|...|.. .+|+++|.
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35677788888877765 3 222 22 777777777777888888877655677778888888777 78888888
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 043580 611 RAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 655 (665)
..++++.+. .++.....|+.+|.. .+++++|.+.++++.+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888776 567778888888888 8889999999988888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-07 Score=72.96 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=57.0
Q ss_pred cccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043580 533 CHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGER 611 (665)
Q Consensus 533 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 611 (665)
.+.+.+++|.+.+++..+. .| +...|..+..++...++++.+...++ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHH
Confidence 3455667777777776643 66 66677767666666665442222111 1456666
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCC
Q 043580 612 AAKSLAGLQPSHGPSRVLLSNIYADAG-----------RWEDAFSIRKEMRDCG 654 (665)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~ 654 (665)
.|+++++++|+...++..||.+|...| ++++|+++|+++++.+
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 666666666666666666666666553 5666666666665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.8e-06 Score=84.93 Aligned_cols=117 Identities=10% Similarity=0.018 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHH
Q 043580 462 DMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDL 540 (665)
Q Consensus 462 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 540 (665)
..+.+.|++++|.+.+++..+..| +...|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345556666666666666555422 34455555666666666666666666665542 2344555555555666666666
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhH--hhhcCChHHHHHHHH
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDL--LGRAGQLEDAEEVIR 582 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 582 (665)
|.+.|+++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666665533 34 33444444444 455555555555555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=85.47 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=93.3
Q ss_pred hcccChHHHHHHHHHHhHhhc--CC---CC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVY--NV---EP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGT 595 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 595 (665)
+...|++++|..++++..+.. -+ .| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777777665431 11 23 35678888888888999999988887764 2243 456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 596 LLAASRIHGNVEVGERAAKSLAG-----LQPSHGPS---RVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 596 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
|...|...|++++|+.+++++++ +.|++|.+ ...|+.++.++|++++|...|+++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999864 57887765 4578888999999999999999998844
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-06 Score=70.53 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=76.0
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC-------------hhHHHHHhhHhhhcCChHHHHHHHHhCC-C----
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD-------------LKHYGCMVDLLGRAGQLEDAEEVIRSMP-M---- 586 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 586 (665)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 333444555566666666666666533 332 2378888888888888888888887765 4
Q ss_pred ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 587 ---KAD-VVIW----GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 587 ---~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
.|+ ...| .....++...|++++|+..|+++++++|++.....-+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 664 5678 8999999999999999999999999999988764444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.1e-06 Score=65.99 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=41.0
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 541 GERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 541 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
|+..|++.. ...| +...+..++.+|...|++++|+..++++. .+.+...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455444 2344 45555555555555555555555555543 22234455555555555555555555555555
Q ss_pred ccCCC
Q 043580 618 GLQPS 622 (665)
Q Consensus 618 ~~~p~ 622 (665)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 55543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=60.50 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCC
Q 043580 587 KADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 660 (665)
++++..+..+..++...++ .++|..+++++++++|+++.....||..+.+.|++++|+..|+++++.... .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3577888888888765555 799999999999999999999999999999999999999999999987665 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.4e-06 Score=61.09 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=62.7
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566677777778888888888877764 2335677778888888888888888888888888888888888888877
Q ss_pred HhcC
Q 043580 635 ADAG 638 (665)
Q Consensus 635 ~~~g 638 (665)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-06 Score=82.10 Aligned_cols=99 Identities=7% Similarity=-0.058 Sum_probs=79.9
Q ss_pred hhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 043580 558 LKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-D---------------VVIWGTLLAASRIHGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 620 (665)
...+..+...|.+.|++++|+..|+++. ..| + ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4455556666666666666666666554 112 1 5788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 621 PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 621 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
|+++.+++.++.+|...|++++|++.|+++++....
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999887543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-05 Score=78.24 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=121.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNS----------------ITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPD 557 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 557 (665)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999999886422111 23778899999999999999999998764333332
Q ss_pred h----hHHHHHhhHhhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----
Q 043580 558 L----KHYGCMVDLLGRAGQLEDAEEVIRSMP-------MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ----- 620 (665)
Q Consensus 558 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 620 (665)
. .+.+.+...+...|++++|..++++.. ..+ ...++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 234455566677899999999987764 222 35678889999999999999999999986432
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 621 -PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 621 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|....++..++.+|...|++++|..++++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22234578899999999999999999999876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=79.34 Aligned_cols=151 Identities=11% Similarity=-0.021 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc
Q 043580 455 NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH 534 (665)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 534 (665)
..+..+...+.+.|++++|...|++.....|+... +...++.+++...+. ...|..+..+|.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 34677888999999999999999998775343221 222333333332221 2367888888999
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAA-SRIHGNVEVGE 610 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~A~ 610 (665)
.|++++|+..+++..+. .| +...|..+..+|...|++++|...|+++. ..| +...+..+... ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999854 67 78889999999999999999999999986 445 44555555555 34456788899
Q ss_pred HHHHHHhccCCCCCc
Q 043580 611 RAAKSLAGLQPSHGP 625 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~ 625 (665)
..++++++..|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=6.3e-06 Score=80.13 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|++.|+++++...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4577889999999999999999999999999999999999999999999999999999999988643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-05 Score=77.64 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccCh----------HHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhh
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGL----------VDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLG 569 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 569 (665)
...++|++.+++++..+ +-+...|+.-...+...|+ ++++++.++.+.+. .| +..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 34578899999999964 4456677776666666666 89999999999965 78 8889999888898
Q ss_pred hcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-------
Q 043580 570 RAG--QLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG-NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADA------- 637 (665)
Q Consensus 570 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 637 (665)
+.| +++++++.++++. ..-+...|+.-..++.+.| .++++++.++++++.+|++..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999987 4457889999999999999 899999999999999999999999999998875
Q ss_pred -------CChhHHHHHHHHHHhCCC
Q 043580 638 -------GRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 638 -------g~~~~A~~~~~~~~~~~~ 655 (665)
+++++|++++++++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567999999999987644
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-06 Score=68.97 Aligned_cols=132 Identities=9% Similarity=-0.031 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC----ChhH
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIK-LN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP----DLKH 560 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~ 560 (665)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555444432100 11 13555666666677777777777776654311111 1445
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP----MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+..+..++...|++++|...+++.. ... ....+..+...+...|++++|...+++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6667777778888888888777654 111 234567777888888999999999988876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.6e-06 Score=67.04 Aligned_cols=124 Identities=11% Similarity=0.001 Sum_probs=89.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChH----------HHHHHHHHHhHhhcCCCC-ChhHHHHHh
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLV----------DLGERYFKSMKSVYNVEP-DLKHYGCMV 565 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 565 (665)
..+.+.+++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++..+ +.| +...|..+.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 346678899999999999975 55888898888888888765 588888888874 477 677888888
Q ss_pred hHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFS 645 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 645 (665)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++..+...+- ..++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 888776653 34331 1137899999999999999999865433332 2344555
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
+.-++..
T Consensus 140 l~~~~~~ 146 (158)
T 1zu2_A 140 LHAEAYK 146 (158)
T ss_dssp HHHHHHH
T ss_pred ccCcccc
Confidence 5544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=61.39 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|++.++++++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999886543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-05 Score=60.16 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 576 DAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 576 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
+|+..++++. ..| +...+..+..++...|++++|+..++++++++|+++..+..++.+|...|++++|++.++++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555565553 233 67778888888888888888888888888888888888888888888888888888888887664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=58.87 Aligned_cols=111 Identities=10% Similarity=-0.063 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHH
Q 043580 501 GDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLED 576 (665)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 576 (665)
+++++|+++|++..+.| .|+.. +...|...+..++|.++|++..+. -++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 44444 777777778888899999998864 467788888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (665)
|.+.+++.....++..+..|...|.. .+|.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998766788889999999988 899999999999998864
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.8e-05 Score=56.05 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
+...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567888889999999999999999999999999999999999999999999999999999988643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.6e-05 Score=57.78 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=58.9
Q ss_pred HhhHhhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP-MKA-DVV-IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
.+..+...|++++|...++++. ..| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4566778888888888888875 233 566 78888888888999999999999999999988876532 455
Q ss_pred hHHHHHHHHH
Q 043580 641 EDAFSIRKEM 650 (665)
Q Consensus 641 ~~A~~~~~~~ 650 (665)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 6666666443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00016 Score=68.03 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 588 ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.++.+|..+...+...|+++.|...+++++.++|+ ...+..+|+++.-.|++++|.+.++++...+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45566666655556667777777777777777654 34456667777777777777777777766544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.4e-05 Score=57.40 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 595 TLLAASRIHGNVEVGERAAKSLAGLQPSHGP-SRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 595 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
..+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|++.++++++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3566788999999999999999999999999 9999999999999999999999999886543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=7.3e-05 Score=56.79 Aligned_cols=68 Identities=7% Similarity=-0.114 Sum_probs=49.5
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+...+..++.+|...|++++|+..++++. .+.+...|..+..++...|++++|+..+++++++.|+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 56677777777777888888888777765 223566777777788888888888888888877665443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.52 E-value=9e-06 Score=77.54 Aligned_cols=224 Identities=9% Similarity=0.078 Sum_probs=132.0
Q ss_pred CcchhhHHHHHHHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhc
Q 043580 88 DPVACNIMISGYIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVH 167 (665)
Q Consensus 88 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 167 (665)
.+..|..|.++..+.++..+|++-| ++..|+..|..++....+.|.+++-++.+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4667889999999999888887655 334567789999999999999999999888877653333 333456666776
Q ss_pred cCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhC
Q 043580 168 LGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERI 247 (665)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (665)
.+++.+.++++ -.|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|+++.|.+.-++.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66654332221 123333334455555555555555555544432 222222334444444444332221
Q ss_pred CCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHH
Q 043580 248 PSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQAT 327 (665)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (665)
.++.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++.+.+++.-.... .....+++.
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 3567788888888888887776555444432 222 11235556667777777776666554211 234455566
Q ss_pred HHHHHHhc
Q 043580 328 IIHFYAAC 335 (665)
Q Consensus 328 l~~~~~~~ 335 (665)
+.-.|++-
T Consensus 269 LaILYsKY 276 (624)
T 3lvg_A 269 LAILYSKF 276 (624)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhc
Confidence 65555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00019 Score=70.68 Aligned_cols=62 Identities=6% Similarity=-0.071 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHG---PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.+++.|..+|...|++++|+.+++++++ +.|+++ ..+..||.+|..+|++++|..+++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566666667777777777777776653 345554 3477888888888888888888888866
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00022 Score=71.55 Aligned_cols=122 Identities=8% Similarity=-0.104 Sum_probs=81.2
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhc----C-CCC-ChhHHHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRN---IKLN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVY----N-VEP-DLKHYGC 563 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~ 563 (665)
+...|++++|+.++++.++.. +.|+ ..+++.+...|...|++++|..++++...-+ | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445566666666666554321 1221 2467777778888888888887777765421 2 234 3566888
Q ss_pred HhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 043580 564 MVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGTLLAASRIHGNVEVGERAAKSLAG 618 (665)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 618 (665)
|+..|...|++++|+.+++++. ..|+ ..+...+..++...|.+++|+.+|+++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999988888764 2232 23445566667788889999999988865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0029 Score=59.57 Aligned_cols=138 Identities=8% Similarity=-0.011 Sum_probs=91.4
Q ss_pred CCcchHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHhcc--------cChHHHHHHHHHHhHh
Q 043580 485 TSVSPWNAIICGLA--MHG---DANLTLKIYSDLEKRNIKLN-SITFIGVLSTCCH--------AGLVDLGERYFKSMKS 550 (665)
Q Consensus 485 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~ 550 (665)
.+...|...+.+.. ..+ +..+|..+|++.++. .|+ ...|..+..+|.. ..........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45556666665533 222 246677777777774 454 3344433333321 0011111122222221
Q ss_pred hcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 551 VYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 551 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
. ...| ++.+|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|.+.+++++.++|..++
T Consensus 270 ~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 L-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp C-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred c-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 1 2334 78889888888888899999999999986 5588888888889999999999999999999999998865
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.009 Score=45.88 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
+.-.|..++..++..+... ..+..-+|-++--....-+-+-..+.++.+-+-|.+.+-. ....++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc---
Confidence 3456888888888888876 3355556666665555666666777777776554444411 11233445544433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+....+..+..+...|.-++-..++..++..+|-++.....++.+|.+.|+..+|.++++++-++|++
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34455566778889999999999999987777778888999999999999999999999999999985
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00041 Score=68.43 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=50.6
Q ss_pred hhhcCChHHHHHHHHhCC------CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCc---hHHH
Q 043580 568 LGRAGQLEDAEEVIRSMP------MKA----DVVIWGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHGP---SRVL 629 (665)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~ 629 (665)
+.+.|++++|+.++++.. ..| ...+++.++.+|...|++++|+.+++++++ +.|++|. .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334555566655555432 111 134556666666666666666666666643 2344443 3667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 043580 630 LSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 630 l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|+.+|..+|++++|..+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777777765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=69.07 Aligned_cols=211 Identities=10% Similarity=0.083 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHH
Q 043580 20 SDYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGY 99 (665)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~ 99 (665)
.-|...|..++.++.+.|.+++-.+++....+. .-++.+=+.|+-+|++.++..+.++++. .||......+..-+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 345567899999999999999999988876665 3455666789999999999877554433 36666677788888
Q ss_pred HhcCChhhHHHhhhcCC------------------------CCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCH
Q 043580 100 IRNDRLNDAREVFDKTP------------------------IKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNE 155 (665)
Q Consensus 100 ~~~~~~~~A~~~~~~~~------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 155 (665)
-..|.++.|.-+|..+. ..++.+|..+-.+|...+.+.-|.-+--.+.- .||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH-
Confidence 88888888888877653 13456777777777777776666555444442 111
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHHhcCCchhHHHHHHHHHhccCCHHHHHHHHhhccC----C-------CcccH
Q 043580 156 VTLASVISSSVHLGGIWECRMLHGLVIKLMIDGFVIISTNLLNMYCVCSSLVEARSLFDEMKE----R-------NIVSW 224 (665)
Q Consensus 156 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~ 224 (665)
-...++..|-..|.+++-..+++..... -.....+++.|.-.|++- ++++..+.++..-. | +...|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 1223445556666666666666554421 134566777777767665 34444444444332 1 23356
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 043580 225 NVMLNGFAKAGLVELARE 242 (665)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~ 242 (665)
.-++-.|.+-..++.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 666666666666665543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00063 Score=54.73 Aligned_cols=93 Identities=12% Similarity=-0.015 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG---QLEDAEEVIRSMP-MK-A--DVVIWGTLLAASRIHGNVE 607 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~ 607 (665)
.+....+.+.|.+..+. + .++..+...+..++.+.+ +.++++.++++.. .. | ..+.+..+.-++.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566677777766553 2 257888888888888887 6668888888875 22 4 3667778888889999999
Q ss_pred HHHHHHHHHhccCCCCCchHHH
Q 043580 608 VGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 608 ~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
+|.++++++++.+|++..+...
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999988775443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0015 Score=58.74 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CChhHH
Q 043580 575 EDAEEVIRSMP-MKAD---VVIWGTLLAASRI-----HGNVEVGERAAKSLAGLQPSH-GPSRVLLSNIYADA-GRWEDA 643 (665)
Q Consensus 575 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 643 (665)
..|...++++. ..|+ ...|..++..|.+ -|+.++|...|+++++++|+. ...++.++..++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 44444444443 3343 3455555555555 377777777777777777764 67777777777664 777777
Q ss_pred HHHHHHHHhCCCccCCC
Q 043580 644 FSIRKEMRDCGMKRLPG 660 (665)
Q Consensus 644 ~~~~~~~~~~~~~~~~~ 660 (665)
.+++++++.......|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 77777777766554344
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0017 Score=63.98 Aligned_cols=93 Identities=13% Similarity=-0.062 Sum_probs=68.5
Q ss_pred cChHHHHHHHHHHhHhhc--CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVY--NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVIWGTLLA 598 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~ 598 (665)
.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467788888777765421 1223 24678888888999999999998888864 2243 456888999
Q ss_pred HHHhcCCHHHHHHHHHHHhc-----cCCCCCchH
Q 043580 599 ASRIHGNVEVGERAAKSLAG-----LQPSHGPSR 627 (665)
Q Consensus 599 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 627 (665)
.|...|++++|+.+++++++ +.|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999964 467777643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0026 Score=48.38 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=55.4
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
+..-+..|+..+.+.|+++.|...++.+. ..+....+..|..++.+.|+++.|...+++++++.|+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666667777777777666653 113467788999999999999999999999999999998765
Q ss_pred HHHH
Q 043580 628 VLLS 631 (665)
Q Consensus 628 ~~l~ 631 (665)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0072 Score=44.54 Aligned_cols=74 Identities=7% Similarity=-0.054 Sum_probs=56.9
Q ss_pred ChhHHHHHhhHhhhcCC---hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQ---LEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
|+..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..++++++.+|. ......+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 67778888887765544 688998888876 3346777888888899999999999999999999998 44344443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=50.68 Aligned_cols=67 Identities=7% Similarity=-0.096 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 588 ADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQ-P-SHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 588 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
++..+...+.+++.+++ ++++++.+++.+++.+ | ++..+++.|+-+|.+.|++++|+++++.+++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 4556666666666665 5 345556666666666677777776666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0033 Score=61.99 Aligned_cols=100 Identities=12% Similarity=-0.065 Sum_probs=74.3
Q ss_pred HHHhcccChHHHHHHHHHHhHhhc--CCCC----ChhHHHHHhhHhhhcCChHHHHHHHHhCC---------CCCC-HHH
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVY--NVEP----DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---------MKAD-VVI 592 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 592 (665)
+..+.+.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888876431 1233 24568888889999999999999988764 2243 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAG-----LQPSHGPSRV 628 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 628 (665)
++.|...|...|++++|+.+++++++ +.|++|.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88899999999999999999999964 5788876543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0047 Score=46.90 Aligned_cols=66 Identities=11% Similarity=-0.072 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQ-------PSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+..-...++..+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..+++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556688899999999999999999998753 2334568899999999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.06 Score=58.69 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 043580 465 AKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLE 514 (665)
Q Consensus 465 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 514 (665)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3345555555544332 233455555555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=1.2 Score=45.83 Aligned_cols=329 Identities=10% Similarity=-0.032 Sum_probs=159.8
Q ss_pred HhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHH
Q 043580 262 YLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKA-GFDCYDFIQATIIHFYAACGRINL 340 (665)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 340 (665)
..+.|++..+..+...+...-+. .-..|..+...+. ....+ ++...+.+. +.+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 34567777777766655432221 2223433333221 11223 333333333 222233444555666666777776
Q ss_pred HHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh
Q 043580 341 ARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI 420 (665)
Q Consensus 341 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 420 (665)
...++.. .+.+...-.....+....|+..+|......+=.. ....++.+-.+|..+.+.|......
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------------CCCCcHHHHHHHHHHHHCCCCCHHH
Confidence 6665544 3334444444556666667655554433332100 0011233333444444333221111
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcch---HHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDN-LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSP---WNAIICG 496 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~l~~~ 496 (665)
.+ .-+......|+...+..+... ++++.. ....++..+.. ...+....... +++... +..-+.-
T Consensus 157 ~~-~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~---p~~~~~~~~~~---~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 157 YL-ERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANN---PNTVLTFARTT---GATDFTRQMAAVAFAS 224 (618)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHC---GGGHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhC---hHhHHHHHhcc---CCChhhHHHHHHHHHH
Confidence 11 112233334444444433322 222221 22223332222 22222222221 122221 1112222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChH----HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcC
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSI----TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAG 572 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (665)
+. ..+++.|...+....... ..+.. ....+.......+...++...+...... .++.......+....+.|
T Consensus 225 la-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 225 VA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence 23 348899999998887654 23332 3334444555556345666666665432 344444445555556789
Q ss_pred ChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 573 QLEDAEEVIRSMPMKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 573 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
+++.|...|+.+...+ ......-+..++...|+.++|..+|+++.+ + ..+|-.|
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 9999999999997542 344455677778889999999999999975 2 2445555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.083 Score=40.77 Aligned_cols=92 Identities=14% Similarity=-0.016 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED---AEEVIRSMPMK--A--DVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~ 608 (665)
.....+.+-|...... +. |+..+-..++.++.+..+... ++.+++++... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555443 32 666777777778887776655 77788776533 3 34556677778999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 043580 609 GERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 609 A~~~~~~~~~~~p~~~~~~~~ 629 (665)
|..+++.+++.+|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999998775443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0073 Score=54.33 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhHhhcCCCCC---hhHHHHHhhHhhh-----cCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHh-cC
Q 043580 537 LVDLGERYFKSMKSVYNVEPD---LKHYGCMVDLLGR-----AGQLEDAEEVIRSMP-MKA--DVVIWGTLLAASRI-HG 604 (665)
Q Consensus 537 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~g 604 (665)
....|...+++..+ +.|+ ...|..|...|.. .|+.++|.+.|++.. ..| +..++......++. .|
T Consensus 178 ~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777774 4775 5578888888888 489999999999886 555 36777777777777 48
Q ss_pred CHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 605 NVEVGERAAKSLAGLQPSH-GPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
+.+.+.+.+++++...|.. |. +.+...+.-++|..++.++-+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999988885 33 123334455677777765543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.44 Score=39.37 Aligned_cols=101 Identities=9% Similarity=0.087 Sum_probs=48.4
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHH
Q 043580 364 IRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHE 443 (665)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 443 (665)
...|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+...++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 3445555555555544 2445566666666666666666666654432 2233333334444444333333
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 444 YVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
.....| -++.....+...|+++++.++|.+..
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 332222 12333344445566666666554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.015 Score=44.80 Aligned_cols=81 Identities=9% Similarity=-0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHhcCChhHHHHHH
Q 043580 575 EDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEV---GERAAKSLAGLQ-P-SHGPSRVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 575 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 647 (665)
..+.+-+.+.. ..++..+--.+.+++.++.+... ++.+++.+.... | ..-...+.|+-.+.+.|+|++|+++.
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444332 34888888899999999887655 999999988876 5 45566889999999999999999999
Q ss_pred HHHHhCCC
Q 043580 648 KEMRDCGM 655 (665)
Q Consensus 648 ~~~~~~~~ 655 (665)
+.+++...
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 99988544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.45 Score=36.75 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
-+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334444444444444444443322 2444444444445555555555555544444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.64 Score=50.51 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHH
Q 043580 326 ATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALE 405 (665)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 405 (665)
..++..+.+.|..+.|.++.+. | ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555555544321 0 111233456677777777766553 45677777777788888888887
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHch
Q 043580 406 LFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIR 481 (665)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 481 (665)
.|.++.. |..+...+...++.+...++.+.....|. ++....+|.+.|++++|.+++.++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7776533 33344444445555554444444433321 2333444556677777766655443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.035 Score=43.90 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHhcccChH------HHHHHHHHHhHhhcCCCCCh-hHHHHHhhH------hhhcCChHHHHHHHHhCC
Q 043580 519 KLNSITFIGVLSTCCHAGLV------DLGERYFKSMKSVYNVEPDL-KHYGCMVDL------LGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 519 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~ 585 (665)
+-|..+|-..+....+.|++ ++..++|++... .++|+. ..+...+.. +...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34677888888888878888 888888888876 455542 122222222 123478888888887774
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHH
Q 043580 586 --MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRV 628 (665)
Q Consensus 586 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 628 (665)
.+.-...|.....--.+.|++..|..++.+++++.|.......
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 2223566655555566888888888888888888887665443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.16 Score=39.86 Aligned_cols=72 Identities=7% Similarity=-0.048 Sum_probs=45.2
Q ss_pred CCChhHHHHHhhHhhhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 555 EPDLKHYGCMVDLLGRAGQL---EDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
.|+..+--.++.++.++.+. .+++.+++++. ..| .......|.-++.+.|++++|.++.+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45666666666666666543 35666666654 223 34455556666777777777777777777777777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.054 Score=56.66 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.-|...|+++.|+.+.++++..-|++-.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44667899999999999999999999999999999999999999999888776
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.02 E-value=2.2 Score=39.52 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCChHHHHHHHHH
Q 043580 456 LSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK----IYSDLEKRNIKLNSITFIGVLST 531 (665)
Q Consensus 456 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~ 531 (665)
+|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.. +++-..+.++++|......++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345566678888888888887644322 3444555544433 34555667778888877777777
Q ss_pred hcccChHH-HHHHHHHHhHh---hcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043580 532 CCHAGLVD-LGERYFKSMKS---VYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGN 605 (665)
Q Consensus 532 ~~~~~~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 605 (665)
+.....-+ .=..+.+++.+ .+|-.| ++.....+...|.+.+++.+|...|= ....+++..+..++.-+...+.
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 76544311 11222222221 124334 88899999999999999999998883 2233444677666655444432
Q ss_pred HHHHHHHHHHHhccCCCCCchHH-HHHHHHHhcCChhHHHHHHHHHHh
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRV-LLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|.....+. ..+--|.-.++...|..+++...+
T Consensus 183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 333347888999999987766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.073 Score=41.20 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=48.2
Q ss_pred CCChhHHHHHhhHhhhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 555 EPDLKHYGCMVDLLGRAGQL---EDAEEVIRSMP-MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.|++.+--.++.++.+..+. .+++.+++++. ..| ....+..|.-++.+.|++++|.++.+.+++.+|++..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 35566666666677666543 45666666654 223 355666677778888888888888888888888876643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.091 Score=41.57 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChH-HHHHHHHHhc------ccChHHHHHHHHHHhHhh
Q 043580 485 TSVSPWNAIICGLAMHGDA------NLTLKIYSDLEKRNIKLNSI-TFIGVLSTCC------HAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 485 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~------~~~~~~~a~~~~~~~~~~ 551 (665)
.|+.+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+..+. ..++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666776 6666677766664 355432 2222222221 135666667777766553
Q ss_pred cCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 552 YNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
.-.. ...|-..+..-.+.|+.+.|.+++.+..
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2222 4555555555566777777777776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.61 E-value=6 Score=42.54 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=129.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC----Ccc--hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-------CCChhHHHHHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQKR----DVY--SWSAMISGYAQNEQPNMALELFHGMVDAGV-------KPNEITMVSVF 426 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll 426 (665)
.-+....|+.+++..+++..... +.. .-..+.-+....|..+++.+++.......- .+....-..+-
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566778888888888776542 222 222333444555655567777766554321 01111112222
Q ss_pred HHHHccCc-HHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCCh
Q 043580 427 CAIASSGT-LKEGRWAHEYVLNNSITL-NDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDA 503 (665)
Q Consensus 427 ~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 503 (665)
-++...|. -+++...+..+....-.. ....-.++...+.-.|+.+....++..+.+...+ +.-...+.-++...|+.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 23333332 234444454444322110 0111223444555667777777777766654222 22233344455577888
Q ss_pred HHHHHHHHHHHHcCCCCChHH--HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHH
Q 043580 504 NLTLKIYSDLEKRNIKLNSIT--FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVI 581 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (665)
+.+..+++.+.... .|.... -..+.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+..++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888877631 222221 123345677788877777788887753 2223333334444444566666666666
Q ss_pred HhCCCCCCHHHHHHHHHHH--HhcCC-HHHHHHHHHHHhc
Q 043580 582 RSMPMKADVVIWGTLLAAS--RIHGN-VEVGERAAKSLAG 618 (665)
Q Consensus 582 ~~~~~~~~~~~~~~l~~~~--~~~g~-~~~A~~~~~~~~~ 618 (665)
+.+....++.+-.....++ ...|+ ..+++..+.++..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6554333444433333332 23333 2566667776653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.7 Score=35.90 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 463 MYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344556666666665544 3345566666666666666666666655443 233333444455555544
Q ss_pred HHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043580 543 RYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSL 616 (665)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 616 (665)
++-+..... | -++.-..++.-.|+++++.+++.+...-|... ......|-.+.|.++.+++
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 443333322 1 13333344555666666666666654322111 1122355566666666555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.13 Score=41.73 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCCCChH--HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCCh-------hHHHHHhhHhhhcCChHHHHHHHHhCC--
Q 043580 517 NIKLNSI--TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDL-------KHYGCMVDLLGRAGQLEDAEEVIRSMP-- 585 (665)
Q Consensus 517 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (665)
|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|+++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444333 23333455556666676666666655432223331 244455666666666666666666542
Q ss_pred ----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 586 ----M-KADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 586 ----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
. .++..+ .+. ..... ..-.. .+.+....+.++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~--~~~----~~ss~-------p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRP--STG----NSAST-------PQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccc--ccc----ccCCC-------ccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 111100 000 00000 00001 1223356788999999999999999998764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.09 E-value=11 Score=40.49 Aligned_cols=267 Identities=10% Similarity=0.020 Sum_probs=144.6
Q ss_pred HHHHHHhcCChHHHHHHHHhccC----Cc--hhhHHHHHHHHHhcCCHHHHHHHHhhcCC-CC----------cchHHHH
Q 043580 328 IIHFYAACGRINLARLQFELGIK----DH--IASWNALIAGFIRNGMIEDARQLFNNMQK-RD----------VYSWSAM 390 (665)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l 390 (665)
..-+....|+.+.+...++.-+. .+ ...-..+.-+....|..+++..++..... .+ ...-..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 33445667777778877776554 12 22223344456666666667666655432 12 1112233
Q ss_pred HHHHHhCCC-chHHHHHHHHHHHCCCCCChhHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHH
Q 043580 391 ISGYAQNEQ-PNMALELFHGMVDAGVKPNEITMV--SVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSA--AIIDMYA 465 (665)
Q Consensus 391 ~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 465 (665)
.-+++-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+.. .+.-++.
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 334443443 2466677766665321 1111122 22233456677777777777776532 222332 3333444
Q ss_pred hcCCHHHHHHHHHHchhCCCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHH
Q 043580 466 KCGSINTAFEVFYHIRDRTTSVSPWN---AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGE 542 (665)
Q Consensus 466 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 542 (665)
..|+.+.+..+++.+........-|. ++..+|+..|+......+++.+.+.. ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 67888888888887776422222233 34456778889887777888888742 222222333333444456666666
Q ss_pred HHHHHhHhhcCCCCChhHHHHHhhHhhhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043580 543 RYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQL-EDAEEVIRSMPMKADVVIWGTLLAASR 601 (665)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~ 601 (665)
++++.+.+. ..|.+..-..++-+....|.. .+|++++..+...++..+-..-+.++.
T Consensus 615 rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 776665542 345444444444444445543 678888888876677666555554444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.78 E-value=1.2 Score=43.88 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC---CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCC----
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP---MK-AD----VVIWGTLLAASRIHGNVEVGERAAKSLAG---LQPSHG---- 624 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~---- 624 (665)
....|+..|...|++.+|..++..+. .. .+ ...+...+..|...+|+.+|..+++++.. -.+.++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567888888899999998888865 11 11 34556667778888999999999888732 122222
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 625 PSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
.++...|..+...++|.+|-+.|.++.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3466788888888999999888887754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.23 E-value=1.8 Score=34.02 Aligned_cols=82 Identities=11% Similarity=-0.058 Sum_probs=58.4
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCChhHHHHHHH
Q 043580 574 LEDAEEVIRSM-PMKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPS-HGPSRVLLSNIYADAGRWEDAFSIRK 648 (665)
Q Consensus 574 ~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 648 (665)
+....+-+.+- ...|+..+--.+.+++.++.+ ..+++.+++.+....|. .-...+.|+-.+.+.|+|++|+++.+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444332 335778887888888888775 45788888888877774 44557788888889999999998888
Q ss_pred HHHhCCC
Q 043580 649 EMRDCGM 655 (665)
Q Consensus 649 ~~~~~~~ 655 (665)
.+++...
T Consensus 102 ~lL~~eP 108 (144)
T 1y8m_A 102 TLFEHER 108 (144)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 8877544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.99 E-value=1 Score=34.89 Aligned_cols=69 Identities=9% Similarity=-0.075 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 586 MKADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPS-HGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 586 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..|++.+--.+.+++.++.+ ..+++.+++.+....|. .-..++.|+-.+.+.|++++|+++.+.+++..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 33677777777777777664 45677777777766663 34556777777888888888888887776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.30 E-value=2.9 Score=37.08 Aligned_cols=118 Identities=11% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChh----HHHHHhhHhhhc
Q 043580 496 GLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLK----HYGCMVDLLGRA 571 (665)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 571 (665)
...+.|+.+.+++.+..-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556778888888877777764 557777777888888888888888888887743 66433 33333332
Q ss_pred CChHHHHH-HHHhCC----CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhccCCCCC
Q 043580 572 GQLEDAEE-VIRSMP----MKADVVIWGTLLAAS--RIHGNVEVGERAAKSLAGLQPSHG 624 (665)
Q Consensus 572 g~~~~A~~-~~~~~~----~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 624 (665)
+.... +|.--. ......-...++.+. ...|+.++|..+-.++.+.-|..+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11221 121111 112223334445553 356888888888888877766544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.67 Score=44.83 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 593 WGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 593 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
...++.++...|++++++..++.++..+|-+...+..|..+|...|+..+|++.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677888888888888888888888888888888888888888888888887744
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=2.8 Score=44.01 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred HhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC
Q 043580 531 TCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP 585 (665)
Q Consensus 531 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (665)
-|...|+++.|+++-++.. .+.| +..+|..|+.+|...|+++.|+-.+..++
T Consensus 346 FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445677777777777776 3466 57777777777777777777777777764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=23 Score=36.37 Aligned_cols=348 Identities=11% Similarity=-0.053 Sum_probs=175.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcccchh
Q 043580 226 VMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMYRAMLCDG-IAPNDVMIVDLISACGRAMAFG 304 (665)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~ 304 (665)
..+..+.+.+++...+..+.. ...+...-.....+....|+..+|....+.+=..| ..|+ .+..++..+.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~------ 147 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWR------ 147 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHH------
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHH------
Confidence 344555666677766665555 22233334445566666777666666666654443 2222 2333333333
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhh-HHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 043580 305 EGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIAS-WNALIAGFIRNGMIEDARQLFNNMQKRD 383 (665)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 383 (665)
+.|......++.. +......|+...|..+.... .++... ...++..+. +...+....... .++
T Consensus 148 ----------~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l-~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~ 211 (618)
T 1qsa_A 148 ----------ASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQM-PADYQTIASAIISLAN---NPNTVLTFARTT-GAT 211 (618)
T ss_dssp ----------HTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTC-CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCC
T ss_pred ----------HCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhC-CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCC
Confidence 3332222222222 24445556666666555433 222221 222222222 222333333322 111
Q ss_pred cc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHH----HHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 043580 384 VY---SWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVS----VFCAIASSGTLKEGRWAHEYVLNNSITLNDNL 456 (665)
Q Consensus 384 ~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (665)
.. .+...+.-+.+ .+++.|...+....... ..+...... +.......+...++...+....... .+...
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 287 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHH
Confidence 11 12222333333 37788999988876543 223332222 2223333442444555555543322 33333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhccc
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTS-VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHA 535 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 535 (665)
..-.+....+.|+++.|...|..+.....+ .....-+..++...|+.++|..+|+.+... . ..|..+. ..+.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHc
Confidence 444555556789999999999999875322 333445666778899999999999998752 2 2233332 1222
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-Chh-----HHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLK-----HYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVG 609 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 609 (665)
|..-. . ....+.+ ... .-..-+..+...|....|...+..+....+......+.......|..+.+
T Consensus 361 g~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 361 GEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp TCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHH
Confidence 21000 0 0000111 000 11123455667898999988877765445555555555556778888888
Q ss_pred HHHHHHHh
Q 043580 610 ERAAKSLA 617 (665)
Q Consensus 610 ~~~~~~~~ 617 (665)
+....+..
T Consensus 433 v~~~~~~~ 440 (618)
T 1qsa_A 433 VQATIAGK 440 (618)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 77766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=1.9 Score=35.03 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhC---CCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDR---TTSV-------SPWNAIICGLAMHGDANLTLKIYSDLEK 515 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 515 (665)
+-.-+..+...|.++.|+-+.+.+... .++. .++..+..++...+++.+|...|++.+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334456667777777777666654433 2332 1344555666666666666666666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.35 E-value=9.4 Score=43.05 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 043580 358 ALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGM 410 (665)
Q Consensus 358 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 410 (665)
.++..+...+.++.+.++..-.. .++.....+..++...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666666666666554443 34444445566677777777777777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.68 E-value=0.89 Score=40.30 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 600 SRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 600 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..+.|+.+.|+..++..++.+|.+......|.+++|-.|+|+.|.+-++-+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666566666666666666666655555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.53 E-value=17 Score=33.36 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCChHHHHHHHHHh
Q 043580 457 SAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLK----IYSDLEKRNIKLNSITFIGVLSTC 532 (665)
Q Consensus 457 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~ 532 (665)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|.. +++-..+.+++++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566677888888888887654332 3445566554444 455556667888887777777766
Q ss_pred cccChHH-HHHHHHHHhHh---hcCCCC--ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 043580 533 CHAGLVD-LGERYFKSMKS---VYNVEP--DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH--- 603 (665)
Q Consensus 533 ~~~~~~~-~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 603 (665)
.....-+ .=.++.+++.+ ..+-.| ++.....+...|.+.|++.+|...|--. ...++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCC
Confidence 5532111 11122222221 113223 7889999999999999999999877522 112455565555554444
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
|...++--++ ...+--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4332222211 1122236678899999988887654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.27 E-value=18 Score=33.44 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=83.3
Q ss_pred HHhccCCH---HHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHHH
Q 043580 199 MYCVCSSL---VEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTMY 275 (665)
Q Consensus 199 ~~~~~g~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 275 (665)
.....|++ =+|.+.+ .++..-|.+.+++++|++++.. -...+.+.|+...+-++-
T Consensus 21 ~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34455666 5555544 3555667778888888887632 233455667766555443
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHhhcccchh-hHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 043580 276 ----RAMLCDGIAPNDVMIVDLISACGRAMAFG-EGLQIHSII----VKAG--FDCYDFIQATIIHFYAACGRINLARLQ 344 (665)
Q Consensus 276 ----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (665)
+-..+.++++|......++..+.....-+ .-..+.+.+ .+.| ...++.....+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55556678888888777777766544311 112222222 2223 334566667777777777777777776
Q ss_pred HHhccCCchhhHHHHHHHHH
Q 043580 345 FELGIKDHIASWNALIAGFI 364 (665)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~ 364 (665)
|-.+-.+++..+..++--+.
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHH
Confidence 65555555455544444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.82 E-value=2.7 Score=30.55 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+ +.+...+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 345556666667778888888888888888888888888888888765 3333456666553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.55 E-value=19 Score=33.00 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHhccCCHHHHHHHHhhccCCCcccHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHhhcCChhHHHHH----
Q 043580 199 MYCVCSSLVEARSLFDEMKERNIVSWNVMLNGFAKAGLVELARELFERIPSKDVVSWGTMIDGYLQVERLSEALTM---- 274 (665)
Q Consensus 199 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---- 274 (665)
.-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3444566666666543 556667777888888877642 23445566776665554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcccchh-hHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 043580 275 YRAMLCDGIAPNDVMIVDLISACGRAMAFG-EGLQIHSIIV----KAG--FDCYDFIQATIIHFYAACGRINLARLQFEL 347 (665)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 347 (665)
++...+.+++++......++..+.....-+ .-.++.+.++ +.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 555566788888888888887765532211 1223333333 222 224566677777777777777777766654
Q ss_pred ccCCchhhHHHHHH
Q 043580 348 GIKDHIASWNALIA 361 (665)
Q Consensus 348 ~~~~~~~~~~~l~~ 361 (665)
+-..+...+..++-
T Consensus 160 ~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 160 GTHDSMIKYVDLLW 173 (312)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHH
Confidence 44334444444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.36 E-value=6.1 Score=28.52 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=29.6
Q ss_pred HHhcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHH
Q 043580 99 YIRNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLA 159 (665)
Q Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 159 (665)
+..+|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..+| .|....|.
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344555555555555555555544444332 34555566666666666554 33444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=3.8 Score=39.49 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh----hcCCCCChhHHH
Q 043580 492 AIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS----VYNVEPDLKHYG 562 (665)
Q Consensus 492 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~ 562 (665)
.++..+...|++.+++..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|++.+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34555666777777777777766643 44666777777777777777777777776543 347777766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.77 E-value=9.3 Score=27.82 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhC
Q 043580 267 RLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAG 317 (665)
Q Consensus 267 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 317 (665)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445677788888888899999999999999999999999999998887653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.36 E-value=18 Score=30.80 Aligned_cols=53 Identities=6% Similarity=0.046 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 359 LIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 359 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
.+.++.+.|..+....+...+.+++..+-...+.++.+.+. ..+...+..+.+
T Consensus 132 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 132 AAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33333333333333333333334444444445555555443 344444444444
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.23 E-value=3.3 Score=33.11 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhcc--------C-------------ChhHHHHHHHHHHHhCCCCC-cc
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAH--------I-------------AVSQGQQIHSLIFKSGLESN-TF 59 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~-------------~~~~a~~~~~~~~~~~~~~~-~~ 59 (665)
|++.|..-..+..++-+.. ...+..+|..|.+. + ....+..+|..|.+.|+-.. +.
T Consensus 25 PL~~w~~YI~W~e~~~P~g--~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~Al 102 (152)
T 4a1g_A 25 PLGEWERYIQWVEENFPEN--KEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSP 102 (152)
T ss_dssp HHHHHHHHHHHHHTTCSSC--THHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHH
T ss_pred CHHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHH
Confidence 7788877776666655433 23466777777552 0 11235556666666554333 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHH
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISG 98 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~ 98 (665)
.|..-...+-..|++.+|.++|+...+.+......|.+.
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 141 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQ 141 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 445555555566666666666666665555555544443
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=83.81 E-value=1.7 Score=35.30 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=50.7
Q ss_pred cchhhhHhhhhhhhcCCCCCCHHHHHHHHHHhhccC---------------------ChhHHHHHHHHHHHhCCCCC-cc
Q 043580 2 PLDHFHSVFNSQKANLQNSDYELALVSALRYCSAHI---------------------AVSQGQQIHSLIFKSGLESN-TF 59 (665)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------------~~~~a~~~~~~~~~~~~~~~-~~ 59 (665)
|++.|..-..+...+-+.......+..+|..|.+.- ....+..+|..|.+.|+-.. +.
T Consensus 18 PL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~Al 97 (164)
T 2wvi_A 18 PLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQ 97 (164)
T ss_dssp THHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHH
T ss_pred ChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHH
Confidence 888888766666554432222233455676666641 11235556666666554333 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHH
Q 043580 60 IQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMIS 97 (665)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~ 97 (665)
.|..-...+-..|++..|.++|+...+.+......|-.
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 44555555556666666666666665554444444433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.51 E-value=7.4 Score=43.88 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLG 569 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (665)
...++..+...+.++.+.++..- .+.+...--.+..++...|++++|.+.|++... ++..+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~-------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh--------
Confidence 34455556666666665543321 233443334455566677777777777776543 332211100
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc-----hHHHHHHHHHhcCChhHH
Q 043580 570 RAGQLEDAEEVIRSMP-MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP-----SRVLLSNIYADAGRWEDA 643 (665)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A 643 (665)
....+-..+..... ...-...|..++..+.+.|.++.+.++.+.+++..+.+.. .+..+-+.+...|++++|
T Consensus 880 --~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 880 --AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp --SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred --hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00011111111111 1123345667777777888888888888888765543332 355566777788888888
Q ss_pred HHHHHHHHhCCC
Q 043580 644 FSIRKEMRDCGM 655 (665)
Q Consensus 644 ~~~~~~~~~~~~ 655 (665)
...+-.+-+...
T Consensus 958 y~aL~~~pd~~~ 969 (1139)
T 4fhn_B 958 HVALMVLSTTPL 969 (1139)
T ss_dssp GHHHHHHHHSSS
T ss_pred HHHHHhCCCHHH
Confidence 777766655444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.62 E-value=4.1 Score=39.91 Aligned_cols=91 Identities=7% Similarity=0.043 Sum_probs=44.8
Q ss_pred HHHHHhhHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CCch----HH
Q 043580 560 HYGCMVDLLGRAGQLEDAEEVIRSMP-----MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPS--HGPS----RV 628 (665)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~----~~ 628 (665)
+...+++.|.+.|++++|.+.+.++. .+.-...+-..+..+...+|+..+...++++..+... ++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44455555556666666666555553 1122344455555555566666666666665432211 1111 12
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
.-|.++...++|.+|.+.|-++
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333345556666666665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.66 E-value=11 Score=27.21 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHH
Q 043580 38 AVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIM 95 (665)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 95 (665)
+.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||..+|.+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 45566666666665553 222222223445556666666666666666665555544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=81.58 E-value=23 Score=29.88 Aligned_cols=34 Identities=3% Similarity=0.087 Sum_probs=14.9
Q ss_pred hcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 043580 378 NMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVD 412 (665)
Q Consensus 378 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 412 (665)
.+..++...-...+.++.+.|. ..+...+..+..
T Consensus 146 ~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 146 ALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3334444444444444444443 334444444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.17 E-value=5.6 Score=30.73 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 505 LTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 505 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
+..+-++.+....+.|++......+.+|.+.+|+..|.++|+.++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34455566666778888888888899999999999999999888864 3444556766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 665 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.76 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.73 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.67 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.27 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.93 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.19 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.31 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.42 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.61 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.7e-21 Score=189.79 Aligned_cols=372 Identities=11% Similarity=0.107 Sum_probs=246.1
Q ss_pred HHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 043580 260 DGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRIN 339 (665)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (665)
..+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+...+..+..++.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34445555555555555555421 1133444444555555555555555555555543 223344455555555555555
Q ss_pred HHHHHHHhccC---CchhhHHHHHHHHHhcCCHHHHHHHHhhc---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 043580 340 LARLQFELGIK---DHIASWNALIAGFIRNGMIEDARQLFNNM---QKRDVYSWSAMISGYAQNEQPNMALELFHGMVDA 413 (665)
Q Consensus 340 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 413 (665)
+|...++.... .+..............+....+....... ..................+....+...+......
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 55555543221 12222222333333333333333322222 1224444455555566667777777777766654
Q ss_pred CCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHH
Q 043580 414 GVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNA 492 (665)
Q Consensus 414 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 492 (665)
. +-+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...+.+.... +.....+..
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 2 2344556666777778888888888888877654 234466777888888888888888888887775 444566777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhc
Q 043580 493 IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRA 571 (665)
Q Consensus 493 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 571 (665)
+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|.+.++..... .| +...+..++.++...
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---CCccchhhhHHHHHHHHC
Confidence 8888888889999999988888753 345677888888888889999999988888754 45 677888888888888
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 043580 572 GQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGR 639 (665)
Q Consensus 572 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 639 (665)
|++++|++.++++. ..| +..++..++.++...|++++|+..++++++++|+++.++..||.+|.+.||
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999988865 344 567788888888899999999999999999999988888899998888875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.1e-21 Score=189.51 Aligned_cols=355 Identities=12% Similarity=0.094 Sum_probs=294.0
Q ss_pred HHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccC---CchhhHHHHHHHHHhcCCHH
Q 043580 294 ISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIK---DHIASWNALIAGFIRNGMIE 370 (665)
Q Consensus 294 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 370 (665)
...+.+.|++++|.+.++++.+.. +.+...+..+..++.+.|++++|...+++.+. .+..++..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 445677899999999999999875 45677888899999999999999999987553 34678889999999999999
Q ss_pred HHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 043580 371 DARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLN 447 (665)
Q Consensus 371 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (665)
+|...+...... +..............+....+........... .................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999887643 33444455555556666777766666655543 33444444555666777778888877777766
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 043580 448 NSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFI 526 (665)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 526 (665)
.. +.....+..+...+...|++++|...+++.....| +...+..+...+...|++++|+..+++....+ +.+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 33456677788999999999999999999887644 56688999999999999999999999999875 56677888
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 603 (665)
.+...+.+.|++++|...|+++.+ +.| +..++..++.++...|++++|.+.++... .+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 899999999999999999999985 478 78899999999999999999999998876 446788899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|++++|+..++++++++|+++.++..+|.+|...|++++|++.|+++++...
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.6e-15 Score=140.29 Aligned_cols=245 Identities=15% Similarity=-0.008 Sum_probs=152.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 043580 388 SAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKC 467 (665)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (665)
-.....+.+.|++++|+..|+++.+.. +-+...+..+..++...|+++.|...+....+.. +-+...+..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345666778888888888888888753 2235566666777777777777777777776654 22345566666777777
Q ss_pred CCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKS 547 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 547 (665)
|++++|.+.++......|+............. ..+.......+..+...+.+.+|...+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 77777777777666543322110000000000 00000011111222334556667777776
Q ss_pred hHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 548 MKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
..+...-.++..++..++.++...|++++|+..+++.. .+.+...|..++.++...|++++|+..++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 66441122245666777777777778888877777764 2235667777777777888888888888888877887777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 626 SRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 626 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
++..||.+|...|++++|++.|+++++.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777888888888888888888777663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.8e-14 Score=133.59 Aligned_cols=269 Identities=13% Similarity=0.052 Sum_probs=199.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHcc
Q 043580 356 WNALIAGFIRNGMIEDARQLFNNMQKR---DVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASS 432 (665)
Q Consensus 356 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 432 (665)
.-.....+.+.|++++|...|+.+.+. ++.+|..+..++...|++++|+..|++..+.. +-+...+..+...+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 335667789999999999999987643 56689999999999999999999999998853 23456777888899999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 043580 433 GTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSD 512 (665)
Q Consensus 433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 512 (665)
|++++|.+.++....... +............. ..+.......+..+...+...+|.+.+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTP--AYAHLVTPAEEGAG-----------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TCHHHHHHHHHHHHHTST--TTGGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhcc--chHHHHHhhhhhhh-----------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999999877542 21110000000000 00011111122233445567788888888
Q ss_pred HHHcCC-CCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-
Q 043580 513 LEKRNI-KLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA- 588 (665)
Q Consensus 513 ~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 588 (665)
...... .++...+..+...+...|++++|+..+++.... .| +..+|..++.+|...|++++|.+.++++. ..|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 776432 235667888888999999999999999999854 67 68889999999999999999999999876 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----------HHHHHHHHHhcCChhHHHHHH
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----------RVLLSNIYADAGRWEDAFSIR 647 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~~ 647 (665)
+...|..++.+|.+.|++++|+..++++++++|++... +..+..++...|+.+.+....
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67889999999999999999999999999999987654 355777788888877665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6.4e-11 Score=110.69 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=156.1
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHchhC-CCCcchHHHHHHHHH
Q 043580 421 TMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCG-SINTAFEVFYHIRDR-TTSVSPWNAIICGLA 498 (665)
Q Consensus 421 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 498 (665)
.+..+...+.+.+..++|...++.+++.+ +-+...++....++...| ++++|+..++.+... +.+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34455556667778888888888888764 333456666777777665 478888888887666 445667888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCC----
Q 043580 499 MHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQ---- 573 (665)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 573 (665)
..|++++|++.++++++.. +.+...|..+...+...|++++|++.++++.+. .| +...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchh
Confidence 8888888888888888754 446777888888888888888888888888743 67 67777777666655544
Q ss_pred --hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch--HHHHHHHHHhc--CChhHHHH
Q 043580 574 --LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS--RVLLSNIYADA--GRWEDAFS 645 (665)
Q Consensus 574 --~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~A~~ 645 (665)
+++|++.+.++. ..| +...|..+...+... ..+++...++++.++.|+.... +..++.+|... ++.+.+.+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 567777776654 334 566677666654443 3577777888887777765443 44566666443 66777777
Q ss_pred HHHHHHh
Q 043580 646 IRKEMRD 652 (665)
Q Consensus 646 ~~~~~~~ 652 (665)
.++++.+
T Consensus 279 ~~~ka~~ 285 (315)
T d2h6fa1 279 ILNKALE 285 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=9.2e-10 Score=105.63 Aligned_cols=195 Identities=13% Similarity=0.033 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhC-----CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHH
Q 043580 458 AAIIDMYAKCGSINTAFEVFYHIRDR-----TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKL----NSIT 524 (665)
Q Consensus 458 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~ 524 (665)
..+...+...|++..+...+...... .+. ...+..+...+...|+++.+...+.......... ....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 34445555666666666655544332 011 1133444555666677777776666665432111 1233
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-----ChhHHHHHhhHhhhcCChHHHHHHHHhCCC-C-----CCHHHH
Q 043580 525 FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-----DLKHYGCMVDLLGRAGQLEDAEEVIRSMPM-K-----ADVVIW 593 (665)
Q Consensus 525 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~ 593 (665)
+......+...++...+...+........-.. ....+..+...+...|++++|...+++... . .....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 44444555566666666666655543211111 123344555666677777777777776641 1 123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh------ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLA------GLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD 652 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 652 (665)
..+..++...|++++|...+++++ +..|.....+..++.+|...|++++|.+.++++++
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556667777777777777777775 33444455667777777777777777777777655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.8e-11 Score=108.28 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=133.2
Q ss_pred CCchHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 398 EQPNMALELFHGMVDAGVKPN---EITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 398 ~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.+.+.++.-+++........+ ..++..+..++.+.|++++|...|+..++.. +-++.++..+..+|.+.|++++|.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 345566666777665422111 1345555677777888888888888887754 334567777888888888888888
Q ss_pred HHHHHchhCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 475 EVFYHIRDRTT-SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 475 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
..|+++....| +..++..+..++...|++++|...+++..+.. +.+......+..++.+.+..+.+..+.......
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 88888777633 45577777778888888888888888877753 334444444444455556555555555554432
Q ss_pred CCCChhHHHHHhhHhhhcCC----hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 554 VEPDLKHYGCMVDLLGRAGQ----LEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
.++...+.. +..+..... .+.+...+.... ..| ...+|..++..+...|++++|...+++++..+|++...+
T Consensus 169 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 -DKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp -CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred -chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222222 222221111 222222211111 112 234566677777888888888888888888888765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.1e-10 Score=103.89 Aligned_cols=226 Identities=10% Similarity=0.066 Sum_probs=166.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-HHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 043580 385 YSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEI-TMVSVFCAIASSG-TLKEGRWAHEYVLNNSITLNDNLSAAIID 462 (665)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (665)
..++.+...+.+.+.+++|+.+++++++. .|+.. .|.....++...| ++++|...++..++.. +-+..++..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 36777778888999999999999999994 56554 4566666666665 5899999999998875 345677888889
Q ss_pred HHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc------c
Q 043580 463 MYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH------A 535 (665)
Q Consensus 463 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~ 535 (665)
.+.+.|++++|++.++++... +.+..+|..+...+...|++++|++.++++++.+ +-+...|+.+...+.+ .
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 999999999999999999887 5567789999999999999999999999999964 4466677766555443 3
Q ss_pred ChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh--cCCHHH
Q 043580 536 GLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP----MKADVVIWGTLLAASRI--HGNVEV 608 (665)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~--~g~~~~ 608 (665)
+.+++|++.+.++.+. .| +...|..+...+...| .+++.+.++... ...+...+..++..|.. .++.+.
T Consensus 200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 4478899999888854 78 7788887777665544 466666665543 22345556666655533 244445
Q ss_pred HHHHHHHHhc
Q 043580 609 GERAAKSLAG 618 (665)
Q Consensus 609 A~~~~~~~~~ 618 (665)
+...++++.+
T Consensus 276 ~~~~~~ka~~ 285 (315)
T d2h6fa1 276 KEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.9e-10 Score=101.40 Aligned_cols=216 Identities=11% Similarity=0.026 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHH
Q 043580 435 LKEGRWAHEYVLNNSITL---NDNLSAAIIDMYAKCGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIY 510 (665)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 510 (665)
.+.+...++++....... ...++..+..+|.+.|++++|...|++.... +.++.+|..+..++...|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344444555554432211 1246667888999999999999999999887 455778999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC
Q 043580 511 SDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA 588 (665)
Q Consensus 511 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 588 (665)
+++.+.. +.+..++..+..++...|++++|...|++..+. .| +......+..++.+.+..+.+..+..... ..+
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999864 446678888999999999999999999999865 56 55555555556666666555555444332 112
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASR----IHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
....+. ++..+. ..+..+.+...+.......|+....+..||.+|...|++++|.+.|+++++..+
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 222222 122222 233455555555555666777778889999999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=5.7e-09 Score=99.90 Aligned_cols=287 Identities=11% Similarity=-0.023 Sum_probs=180.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-C-----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhHHHHHH
Q 043580 360 IAGFIRNGMIEDARQLFNNMQK--R-D-----VYSWSAMISGYAQNEQPNMALELFHGMVDAGV-KPN----EITMVSVF 426 (665)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~--~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll 426 (665)
...+...|++++|+++++...+ | + ...+..+..++...|++++|+..|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445555666666666554321 1 1 12455566677777777777777776654211 111 12344455
Q ss_pred HHHHccCcHHHHHHHHHHHHH----cCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC------cchHHHH
Q 043580 427 CAIASSGTLKEGRWAHEYVLN----NSITLND---NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTS------VSPWNAI 493 (665)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l 493 (665)
..+...|++..+...+..... ....... ..+..+...+...|+++.+...+.......+. ...+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 566677777777777766543 1112111 24455667788888888888888776654111 2234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCCC----hHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC--ChhHHHHHh
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRN--IKLN----SITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP--DLKHYGCMV 565 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~ 565 (665)
...+...++...+...+.+..... .... ...+......+...|+++.|...++.......-.+ ....+..++
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 666778888888888877665421 1111 22455566677888999999999998774311111 234556688
Q ss_pred hHhhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC---------chHH
Q 043580 566 DLLGRAGQLEDAEEVIRSMP-------MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG---------PSRV 628 (665)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~ 628 (665)
.++...|++++|...++++. ..| ....+..+..++...|++++|...+++++++.+... ....
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 89999999999999998864 223 345677888899999999999999999987654322 1233
Q ss_pred HHHHHHHhcCChhHHHHH
Q 043580 629 LLSNIYADAGRWEDAFSI 646 (665)
Q Consensus 629 ~l~~~~~~~g~~~~A~~~ 646 (665)
.+...+...++.+++.+-
T Consensus 339 ~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhcCCChHHHHH
Confidence 444556677877777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.3e-11 Score=115.65 Aligned_cols=231 Identities=8% Similarity=-0.071 Sum_probs=165.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 043580 397 NEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSG--TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAF 474 (665)
Q Consensus 397 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 474 (665)
.|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+.+.........+......+...+.+++|.
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 345678888888887743 224444555555555544 57888888888887654333333445567777889999999
Q ss_pred HHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcC
Q 043580 475 EVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYN 553 (665)
Q Consensus 475 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 553 (665)
..++.+... +.+..+|+.+...+...|++++|...+++..+. .|+. ..+...+...+..+++...+......
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~-- 237 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG-- 237 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--
Confidence 999998887 445678888889999999888776655444332 1211 12223344456666777777777643
Q ss_pred CCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 043580 554 VEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLL 630 (665)
Q Consensus 554 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 630 (665)
.| +...+..++..+...|++++|...+.+.. ..| +...|..++.++...|++++|+..++++++++|+...+|..|
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 45 66677778888888999999999988876 344 567788889999999999999999999999999988888888
Q ss_pred HHHHHh
Q 043580 631 SNIYAD 636 (665)
Q Consensus 631 ~~~~~~ 636 (665)
+..+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=1.4e-08 Score=94.52 Aligned_cols=189 Identities=8% Similarity=-0.022 Sum_probs=144.3
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCc--chHHHHHHHHHhcCChHHHHHHHH
Q 043580 434 TLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSV--SPWNAIICGLAMHGDANLTLKIYS 511 (665)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 511 (665)
..+++..++++.++...+.+...+...+..+.+.|+++.|..+|+++....|.. ..|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456778888888766555566677778888888999999999999888764432 367888888888899999999999
Q ss_pred HHHHcCCCCChHHHHHHHHH-hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC----
Q 043580 512 DLEKRNIKLNSITFIGVLST-CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP---- 585 (665)
Q Consensus 512 ~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 585 (665)
++.+.+ +.+...|...+.. +...|+.+.|..+|+.+... .| ++..+...++.+.+.|+++.|..+|++..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 988764 3444555444433 33467889999999998864 45 67888888888889999999999998864
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 586 MKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 586 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
..| ....|...+.--...|+.+.+..+++++.+..|+....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 122 24578888877788899999999999998888877553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=8.7e-11 Score=111.55 Aligned_cols=251 Identities=10% Similarity=-0.055 Sum_probs=175.6
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhHH-H---HHHHHH-------HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 395 AQNEQPNMALELFHGMVDAGVKPNEITM-V---SVFCAI-------ASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 395 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~---~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
...+..++|++++++..+ ..|+..+. + .++..+ ...|.++++..+++.+.+.. +-+...+..+..+
T Consensus 40 ~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 334445789999988887 35665442 1 222222 23445677888888887654 3344455555555
Q ss_pred HHhcC--CHHHHHHHHHHchhC-CCCcchHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHH
Q 043580 464 YAKCG--SINTAFEVFYHIRDR-TTSVSPWNA-IICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVD 539 (665)
Q Consensus 464 ~~~~~--~~~~A~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 539 (665)
+...+ ++++|...+.++... +++...+.. ....+...+.++.|+..+++++... +-+...|..+...+...|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 55544 578888888888776 344555543 4456677888999999888888764 446777888888888888888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 043580 540 LGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLA 617 (665)
Q Consensus 540 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 617 (665)
+|...++..... .|+. ..+...+...+..+++...+.... .++....+..++..+...|+.++|...+.++.
T Consensus 196 ~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777666655532 3311 122333455666777777766653 33445556667778888999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 618 GLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 618 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..+|++..++..+|.+|...|++++|.+.++++++...
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999988643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=1.8e-08 Score=93.71 Aligned_cols=184 Identities=8% Similarity=-0.096 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHchhC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 468 GSINTAFEVFYHIRDR--TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 468 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
+..++|..+|++.... +.+...|...+..+...|+.+.|..++++++..........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3467888999988764 33455788888889999999999999999998642233457889999999999999999999
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHh-hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLL-GRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQP 621 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 621 (665)
+++.+ ..| +...|...+... ...|+.+.|..+++++. .+.+...|...+..+...|++++|..+|++++...|
T Consensus 158 ~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99984 456 566666555543 34689999999999987 334688999999999999999999999999999877
Q ss_pred CCCc----hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 622 SHGP----SRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 622 ~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
.++. .+...+..-...|+.+.+.++++++.+.-
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6553 46667777778899999999999987743
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=2.4e-09 Score=92.91 Aligned_cols=114 Identities=8% Similarity=-0.169 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 043580 520 LNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTL 596 (665)
Q Consensus 520 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 596 (665)
|+...+.-....+.+.|++++|+..|+++... .| ++.+|..++.+|.+.|++++|+..++++. ..| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 45555555566666666666666666666533 45 55666666666666666666666666654 233 45556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
+.++...|++++|+..++++++++|+....+..++..+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 6666666666666666666666666555444444443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1e-08 Score=79.15 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 043580 529 LSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGN 605 (665)
Q Consensus 529 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 605 (665)
...+.+.|++++|+..|++..+. .| ++..|..++.+|.+.|++++|+..++++. .+.++..|..++.++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34455566666666666666643 55 55566666666666666666666666654 23355566666666666666
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHH
Q 043580 606 VEVGERAAKSLAGLQPSHGPSRVLLSNI 633 (665)
Q Consensus 606 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 633 (665)
+++|+..++++++++|+++.++..++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666666655555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.8e-09 Score=81.12 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=86.1
Q ss_pred HHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCh
Q 043580 563 CMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRW 640 (665)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 640 (665)
.-+..+.+.|++++|+..|+++. .+.++..|..+..++.+.|++++|+..++++++++|+++..+..+|.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 35677889999999999999986 4457889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCc
Q 043580 641 EDAFSIRKEMRDCGMK 656 (665)
Q Consensus 641 ~~A~~~~~~~~~~~~~ 656 (665)
++|++.++++++....
T Consensus 88 ~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999886543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=5.4e-09 Score=80.03 Aligned_cols=91 Identities=10% Similarity=-0.033 Sum_probs=83.0
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
...++..+.+.|++++|+..++++. ..| ++..|..++.++.+.|++++|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456778889999999999999986 345 68999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHH
Q 043580 639 RWEDAFSIRKEMR 651 (665)
Q Consensus 639 ~~~~A~~~~~~~~ 651 (665)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=6e-08 Score=82.41 Aligned_cols=123 Identities=9% Similarity=-0.053 Sum_probs=93.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+...|+++.|++.|+++ .+|+..+|..+..+|...|++++|++.|++..+. .| ++..|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence 45567788888888888753 2567777888888888888888888888888854 67 6778888888888888
Q ss_pred ChHHHHHHHHhCC--CCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 043580 573 QLEDAEEVIRSMP--MKA----------------DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH 623 (665)
Q Consensus 573 ~~~~A~~~~~~~~--~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 623 (665)
++++|+..|++.. .++ ...++..+..++.+.|++++|.+.+++++++.|+.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888888887753 110 13456677777888888888888888888888874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=2.8e-08 Score=91.47 Aligned_cols=192 Identities=9% Similarity=-0.003 Sum_probs=116.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHchhC---CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--ChHHHHH
Q 043580 460 IIDMYAKCGSINTAFEVFYHIRDR---TTS----VSPWNAIICGLAMHGDANLTLKIYSDLEKRNIK---L--NSITFIG 527 (665)
Q Consensus 460 l~~~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~ 527 (665)
....|...|++++|.+.|.+.... ..+ ..+|..+..+|.+.|++++|.+.+++..+.-.. + ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345566667777777666665543 111 235666777777777787777777765542111 1 1234555
Q ss_pred HHHHhc-ccChHHHHHHHHHHhHhhc---CCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC---C----C-HHHH
Q 043580 528 VLSTCC-HAGLVDLGERYFKSMKSVY---NVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK---A----D-VVIW 593 (665)
Q Consensus 528 l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~----~-~~~~ 593 (665)
+...|. ..|++++|++.+++..+.. +-.+ ...++..++..|...|++++|.+.++++. .. + . ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555664 4588888888888776421 1112 24457778888888899999998888764 11 1 1 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHHh--cCChhHHHHHHHHHH
Q 043580 594 GTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-----RVLLSNIYAD--AGRWEDAFSIRKEMR 651 (665)
Q Consensus 594 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~~ 651 (665)
...+.++...|+++.|...++++.+++|..+.. ...|+.++.. .+++++|++.|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455556778889999999999998888865543 2345555544 345778887775543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=4.3e-08 Score=80.71 Aligned_cols=118 Identities=11% Similarity=0.047 Sum_probs=99.8
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIH 603 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 603 (665)
.....|.+.|++++|+..|+++.+. .| +...|..++.+|...|++++|++.|+++. .+.+...|..++.++...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 3455778999999999999999964 78 78899999999999999999999999986 444678999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCChhHHHHHH
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA--DAGRWEDAFSIR 647 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~ 647 (665)
|++++|+..+++++.++|+++..+..+..+.. ..+.+++|....
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999998888776643 445566666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=2e-08 Score=86.82 Aligned_cols=95 Identities=8% Similarity=-0.040 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 043580 486 SVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCM 564 (665)
Q Consensus 486 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 564 (665)
+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++. .+.| +..+|..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHH
Confidence 33344444555555555555555555555543 3344555555555555555555555555555 3455 45555555
Q ss_pred hhHhhhcCChHHHHHHHHhC
Q 043580 565 VDLLGRAGQLEDAEEVIRSM 584 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~ 584 (665)
+.+|...|++++|+..++++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.3e-08 Score=81.44 Aligned_cols=95 Identities=9% Similarity=-0.040 Sum_probs=86.2
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAG 638 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 638 (665)
+...+..|.+.|++++|+..|+++. .+.+...|..++.++...|++++|+..++++++++|++..++..+|.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3345678889999999999999986 44578899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 043580 639 RWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 639 ~~~~A~~~~~~~~~~~~ 655 (665)
++++|.+.+++++....
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999988643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=6.2e-08 Score=82.34 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=81.7
Q ss_pred hhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHH
Q 043580 565 VDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAF 644 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 644 (665)
...+...|++++|++.|+++. +|++.+|..++.++...|++++|+..|+++++++|+.+..+..+|.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 566778999999999999864 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 043580 645 SIRKEMRDC 653 (665)
Q Consensus 645 ~~~~~~~~~ 653 (665)
+.|++++..
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=4.7e-08 Score=75.40 Aligned_cols=107 Identities=13% Similarity=-0.013 Sum_probs=87.5
Q ss_pred HHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC---ChHHHHHHHHhCCC-CCCH---HHHHHHH
Q 043580 526 IGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG---QLEDAEEVIRSMPM-KADV---VIWGTLL 597 (665)
Q Consensus 526 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~---~~~~~l~ 597 (665)
..++..+...+++++|.+.|++.... .| ++.++..++.++.+.+ ++++|+.+++++.. .|++ .+|..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45677888889999999999999854 77 7889999999998755 45579999999763 3433 4788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 043580 598 AASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYA 635 (665)
Q Consensus 598 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 635 (665)
.+|.+.|++++|+..++++++++|++..+...+..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987766655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.8e-07 Score=76.37 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=73.3
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.+|..++.+|.+.|++++|+..++++. ..| ++..|..++.++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457778899999999999999999886 344 788999999999999999999999999999999999999888888776
Q ss_pred cCChhHH
Q 043580 637 AGRWEDA 643 (665)
Q Consensus 637 ~g~~~~A 643 (665)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=1.3e-05 Score=72.08 Aligned_cols=232 Identities=10% Similarity=-0.056 Sum_probs=137.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 043580 384 VYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDM 463 (665)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (665)
+..+..+...+.+.+++++|++.|++..+.| +...+..|-..+...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G------------------------------- 47 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG------------------------------- 47 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-------------------------------
Confidence 4455555666666677777777777666654 222222222222210
Q ss_pred HHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHH-HHHHHHhcccChH
Q 043580 464 YAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAM----HGDANLTLKIYSDLEKRNIKLNSITF-IGVLSTCCHAGLV 538 (665)
Q Consensus 464 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~ 538 (665)
.....+...|...+...... .++.....+...+.. .++.+.|...++...+.|.......+ .............
T Consensus 48 ~~~~~d~~~a~~~~~~a~~~-~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 48 QGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCcchhHHHHHHhhcccccc-cccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchh
Confidence 00133444455554444442 122223333333322 34667777777777766522211111 1111112234456
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 043580 539 DLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGE 610 (665)
Q Consensus 539 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 610 (665)
..+...+..... ..+...+..|...|.. ..+...+...++......+......+...+.. ..++++|+
T Consensus 127 ~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 127 KKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence 667776666553 2356666777777764 45667777777776655677777778777765 56899999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 043580 611 RAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 656 (665)
..|+++.+.. ++..+..||.+|.. ..++++|.+.|+++.+.|.+
T Consensus 203 ~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 203 ARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9999998874 67788999999875 44899999999999888753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.5e-08 Score=73.65 Aligned_cols=94 Identities=10% Similarity=-0.059 Sum_probs=81.1
Q ss_pred HHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCCC--chHHHHHHHH
Q 043580 562 GCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHG---NVEVGERAAKSLAGLQPSHG--PSRVLLSNIY 634 (665)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~ 634 (665)
..+++.+...+++++|.+.|++.. .+.++.++..+..++.+.+ ++++|+.+++++++.+|++. .+++.||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999986 4568899999999998755 45679999999999888664 4789999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 043580 635 ADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 635 ~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.+.|++++|+++|+++++...
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999988653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.5e-07 Score=72.44 Aligned_cols=93 Identities=8% Similarity=0.002 Sum_probs=75.5
Q ss_pred HHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch-------HHHHH
Q 043580 561 YGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS-------RVLLS 631 (665)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~ 631 (665)
+..+...|.+.|++++|+..|+++. .+.+...|..+..+|.+.|++++|+..++++++++|+++.. +..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4567778888899999999888876 33467888888999999999999999999999988888764 44566
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 043580 632 NIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
.++...+++++|++.+++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6778888999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4.9e-07 Score=74.90 Aligned_cols=113 Identities=7% Similarity=-0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043580 524 TFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIH 603 (665)
Q Consensus 524 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 603 (665)
.+......+.+.|++++|+..|.+..+.....+.... .-...... ....+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhch----hHHHHHHHHHHHHHhh
Confidence 3444555667777777777777776654221111000 00000000 0123577788899999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 604 GNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 604 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
|++++|+..++++++++|+++.++..+|.+|...|++++|++.|+++++...
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.43 E-value=1.3e-06 Score=72.15 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=77.4
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.+|..+..+|.+.|++++|+..++++. .+.+...|..++.++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356678889999999999999999886 445788899999999999999999999999999999999998888888777
Q ss_pred cCChh-HHHHHHHHHHh
Q 043580 637 AGRWE-DAFSIRKEMRD 652 (665)
Q Consensus 637 ~g~~~-~A~~~~~~~~~ 652 (665)
.+... ...+.+.+|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 66543 45555555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=6.1e-07 Score=82.22 Aligned_cols=173 Identities=8% Similarity=-0.056 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHhcccChHHHHHH
Q 043580 469 SINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKR----NIKL-NSITFIGVLSTCCHAGLVDLGER 543 (665)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 543 (665)
++++|.++|.+ ....|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+
T Consensus 32 ~~~~Aa~~y~~-------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~ 98 (290)
T d1qqea_ 32 KFEEAADLCVQ-------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (290)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHH-------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45666666554 456788999999999999988763 1112 23578889999999999999999
Q ss_pred HHHHhHhhcCCCC----ChhHHHHHhhHhhh-cCChHHHHHHHHhCC------CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043580 544 YFKSMKSVYNVEP----DLKHYGCMVDLLGR-AGQLEDAEEVIRSMP------MKA--DVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 544 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
.+++......-.. ...++..++..|.. .|++++|++.++++. ..+ ...++..++..+...|++++|+
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 9998765321111 24556677777754 699999999998874 111 2356788899999999999999
Q ss_pred HHHHHHhccCCCCCch-------HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 611 RAAKSLAGLQPSHGPS-------RVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
..++++....|..+.. +...+.++...|+++.|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999988877643 4566777888999999999998887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=6.7e-07 Score=74.17 Aligned_cols=87 Identities=7% Similarity=-0.066 Sum_probs=63.8
Q ss_pred ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 043580 557 DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MK-ADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIY 634 (665)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 634 (665)
+...|..+..+|.+.|++++|+..++++. .. .++..|..++.++...|++++|+..++++++++|++..+...|..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667777788888888888888887765 33 36777888888888888888888888888888888877777776666
Q ss_pred HhcCChhHH
Q 043580 635 ADAGRWEDA 643 (665)
Q Consensus 635 ~~~g~~~~A 643 (665)
.+.....++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.35 E-value=1.1e-06 Score=71.11 Aligned_cols=63 Identities=10% Similarity=-0.097 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 592 IWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 592 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+|..+..+|.+.|++++|+..++++++++|++..+++.+|.+|...|++++|+..|+++++.+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455666667777777777777777777777777777777777777777777777777776654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6.1e-08 Score=96.40 Aligned_cols=117 Identities=12% Similarity=-0.040 Sum_probs=60.7
Q ss_pred cChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043580 535 AGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAA 613 (665)
Q Consensus 535 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 613 (665)
.+.++.++..+.... ++.| +...+..+...+.+.|+.++|...+++.........+..++..+...|++++|+..|
T Consensus 99 ~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC----------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344555554444433 5556 566677777777777887777766655431112345667777788888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 614 KSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 614 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+++++++|+++..|..||.+|...|+..+|...|.+++...
T Consensus 176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888777643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=6.5e-07 Score=74.21 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
....|..+..++.+.|++++|+..++++++++|+++.++..+|.+|...|++++|++.|+++++...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4456778889999999999999999999999999999999999999999999999999999998654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=1.8e-06 Score=69.94 Aligned_cols=78 Identities=14% Similarity=0.016 Sum_probs=68.4
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD 636 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 636 (665)
.+|..++.+|.+.|++++|++.++++. .+.+..+|..++.++...|++++|+..++++++++|++..+...+..+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 467789999999999999999999976 444789999999999999999999999999999999999887777665443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.27 E-value=1.1e-06 Score=70.30 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 605 NVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 605 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
++++|...|+++++++|++..++..|+.. .+|.+++.++.+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46899999999999999998877777654 467777777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.23 E-value=3.9e-06 Score=69.20 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 591 VIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
..|..+..+|.+.|++++|+..++++++++|++..++..++.+|...|++++|++.|+++++...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35667888899999999999999999999999999999999999999999999999999988654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.16 E-value=6.1e-06 Score=62.43 Aligned_cols=86 Identities=7% Similarity=0.006 Sum_probs=42.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcC
Q 043580 494 ICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAG 572 (665)
Q Consensus 494 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (665)
...+.+.|++++|+..+++.+... +-+...|..+..++.+.|++++|+..|++..+. .| +...+..++.+|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHHCC
Confidence 344444555555555555555432 223444555555555555555555555555432 44 4455555555555555
Q ss_pred ChHHHHHHHHh
Q 043580 573 QLEDAEEVIRS 583 (665)
Q Consensus 573 ~~~~A~~~~~~ 583 (665)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.00084 Score=59.63 Aligned_cols=227 Identities=9% Similarity=-0.097 Sum_probs=121.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCChhHHHHHH
Q 043580 352 HIASWNALIAGFIRNGMIEDARQLFNNMQKR-DVYSWSAMISGYAQ----NEQPNMALELFHGMVDAGVKPNEITMVSVF 426 (665)
Q Consensus 352 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 426 (665)
|+..+..|...+.+.+++++|.+.|+...+. +...+..|...|.. ..+...|...+......+.. .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence 4566777888888999999999999987543 66667677777765 45677788887777765521 2222222
Q ss_pred HHHH----ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCC
Q 043580 427 CAIA----SSGTLKEGRWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGD 502 (665)
Q Consensus 427 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 502 (665)
..+. ...+.+.+...++...+.|..... ..+...+... ......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~---~~l~~~~~~~-----------------------------~~~~~~ 125 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGC---ASLGGIYHDG-----------------------------KVVTRD 125 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHC-----------------------------SSSCCC
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHH---HhhcccccCC-----------------------------Ccccch
Confidence 2221 234455555555555554422111 1111111110 001223
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHhcc----cChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCCh
Q 043580 503 ANLTLKIYSDLEKRNIKLNSITFIGVLSTCCH----AGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQL 574 (665)
Q Consensus 503 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 574 (665)
...+...+..... ..+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..++
T Consensus 126 ~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 126 FKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred hHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccch
Confidence 3334444444333 2233333334333332 34455555555555432 244444455555543 4567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 043580 575 EDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (665)
++|...|++....-++..+..|...|.. ..|.++|...++++.+..
T Consensus 199 ~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 7777777766544455666666666654 336677777777776554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=1.1e-05 Score=66.72 Aligned_cols=121 Identities=15% Similarity=0.064 Sum_probs=85.6
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNV 606 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 606 (665)
.........|++++|.+.|.+... +.+.... . .+...........-++. .....+..++.++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l----~-~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALR---EWRGPVL----D-DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT---TCCSSTT----G-GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---hCccccc----c-cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 344566778999999999999884 3442210 0 00000011111111111 1235677889999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 043580 607 EVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRD-----CGMKRLP 659 (665)
Q Consensus 607 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 659 (665)
++|+..++++++++|.+...|..|+.+|...|++++|++.|+++.+ .|+++.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999844 5776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.98 E-value=8.9e-06 Score=66.00 Aligned_cols=89 Identities=13% Similarity=0.004 Sum_probs=63.0
Q ss_pred hhHhhhcCChHHHHHHHHhCC----CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------
Q 043580 565 VDLLGRAGQLEDAEEVIRSMP----MKA----------DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSH------- 623 (665)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------- 623 (665)
+..+...|++++|++.|++.. ..| ....|+.+..+|...|++++|...+++++++.|+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 334445566666666665543 111 13567778888888888888888888887654422
Q ss_pred ----CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043580 624 ----GPSRVLLSNIYADAGRWEDAFSIRKEMRDC 653 (665)
Q Consensus 624 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 653 (665)
...+..+|.+|...|++++|++.|+++++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124678999999999999999999998874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=7.8e-06 Score=59.49 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=58.3
Q ss_pred hHHHHHhhHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 043580 559 KHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVL 629 (665)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 629 (665)
..+-.++..+.+.|++++|+..++++. ..+ ...++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334466777778888888888777763 112 25678889999999999999999999999999999988877
Q ss_pred HHHH
Q 043580 630 LSNI 633 (665)
Q Consensus 630 l~~~ 633 (665)
++..
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=3.2e-06 Score=67.47 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=72.9
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGE 610 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 610 (665)
|.+.+.+++|+..|+...+. .| ++..+..+..+|...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHH
Confidence 34556667777777777643 66 56666666666665555444433 234568899
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCC
Q 043580 611 RAAKSLAGLQPSHGPSRVLLSNIYADAGR-----------WEDAFSIRKEMRDCGM 655 (665)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~ 655 (665)
..++++++++|+++.++..+|.+|...|+ +++|.+.|+++++...
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 99999999999999999999999988764 6889999999887554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.7e-05 Score=60.42 Aligned_cols=93 Identities=5% Similarity=0.031 Sum_probs=59.8
Q ss_pred HHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-C---CCC-----HHHHHHH
Q 043580 527 GVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-M---KAD-----VVIWGTL 596 (665)
Q Consensus 527 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~-----~~~~~~l 596 (665)
.+...+...|++++|+..|++..+. .| +...+..+..+|.+.|++++|++.++++. . .+. ..+|..+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445566666666666666666643 55 56666666666666666666666666654 0 111 2355566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 597 LAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 597 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
...+...+++++|+..+++++...|+
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77777888888888888888877664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0081 Score=54.25 Aligned_cols=135 Identities=6% Similarity=-0.020 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCchHHHHHHhhcCCCCcchhhHHHHHHH
Q 043580 21 DYELALVSALRYCSAHIAVSQGQQIHSLIFKSGLESNTFIQNSLINLYAKCGLISQAKSMFDSCSTLDPVACNIMISGYI 100 (665)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 100 (665)
|+..-...+...|-+.|.++.|..++..+ .-|..++..+.+.+++..|.+.+.+.. ++.+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 34444445555666666666666666532 234455556666666666655555442 3445555555555
Q ss_pred hcCChhhHHHhhhcCCCCCcccHHHHHHHHhhcCChHHHHHHHHHhHHcCCCCCHhhHHHHHHHHhcc
Q 043580 101 RNDRLNDAREVFDKTPIKCCVSYTSMIMGFAQNDCWREALEVFRDMRILGVIPNEVTLASVISSSVHL 168 (665)
Q Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 168 (665)
+......|.- ..............++..|-..|.+++...+++..... -.++...++-++..+++.
T Consensus 81 ~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 81 DGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 5444333211 11111112223344555555555555555555544322 123334444454444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=4.7e-06 Score=82.48 Aligned_cols=130 Identities=8% Similarity=-0.059 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHchhC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDR-TTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYF 545 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 545 (665)
.+.++.|+..+....+. +++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34445554444443333 2334455666666666677776666665554321 1235556666666677777777777
Q ss_pred HHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 043580 546 KSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP--MKADVVIWGTLLAASRI 602 (665)
Q Consensus 546 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 602 (665)
++..+ +.| +...|+.|+.++...|+..+|+..|.+.. .+|.+.++..|...+.+
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 77763 366 56667777777777777777777766654 34566666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=2.5e-05 Score=69.03 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=89.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLE 575 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 575 (665)
..+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.|+...+. .| +...+..+..++...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345688888888888888864 557788888899999999999999999998854 77 4666666666665555555
Q ss_pred HHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchH
Q 043580 576 DAEEVIRSMP--MKA-DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSR 627 (665)
Q Consensus 576 ~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 627 (665)
++..-..... ..| ....+......+...|+.++|...++++.++.|+.+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 5443322211 223 223333445557788999999999999999888877653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2.9e-05 Score=56.34 Aligned_cols=68 Identities=10% Similarity=-0.077 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCC-------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 589 DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHG-------PSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+...+..++..+.+.|++++|+..+++++++.|.++ .++..||.+|.+.|++++|++.++++++....
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 345566788999999999999999999998766543 35788999999999999999999999987543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.017 Score=51.99 Aligned_cols=135 Identities=7% Similarity=0.045 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHhhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccCCchhhHHHHHHHHH
Q 043580 285 PNDVMIVDLISACGRAMAFGEGLQIHSIIVKAGFDCYDFIQATIIHFYAACGRINLARLQFELGIKDHIASWNALIAGFI 364 (665)
Q Consensus 285 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 364 (665)
||..-...+...|.+.|.++.|..+|..+. -+..++..+.+.++++.|...+.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 444444455555666677777766665332 2334455555555555555544432 13334555555555
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhHHHHHHHHHHcc
Q 043580 365 RNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGVKPNEITMVSVFCAIASS 432 (665)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 432 (665)
+.....-+.-+ ......++.....++..|-..|.+++.+.+++..... -.++...++.++..+++.
T Consensus 81 ~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 81 DGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 44444332111 1111113333344555555555555555555544322 133333444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=1.4e-05 Score=70.66 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=89.7
Q ss_pred hcccChHHHHHHHHHHhHhhcCCCC-ChhHHHHHhhHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 043580 532 CCHAGLVDLGERYFKSMKSVYNVEP-DLKHYGCMVDLLGRAGQLEDAEEVIRSMP-MKA-DVVIWGTLLAASRIHGNVEV 608 (665)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 608 (665)
..+.|++++|+..+++..+. .| |...+..++.+|+..|++++|...++... ..| +...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45679999999999999954 88 89999999999999999999999999986 445 45555555555555555444
Q ss_pred HHHHHHHHhc-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043580 609 GERAAKSLAG-LQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCG 654 (665)
Q Consensus 609 A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 654 (665)
+.....+... ..|.....+...+.++...|+.++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 4333332222 234444556677888999999999999999998854
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.49 E-value=0.00018 Score=57.86 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=65.1
Q ss_pred HHhcccChHHHHHHHHHHhHhhcCCCCC----------hhHHHHHhhHhhhcCChHHHHHHHHhCC--------CCCC--
Q 043580 530 STCCHAGLVDLGERYFKSMKSVYNVEPD----------LKHYGCMVDLLGRAGQLEDAEEVIRSMP--------MKAD-- 589 (665)
Q Consensus 530 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-- 589 (665)
..+...|++++|++.|++..+...-.|+ ..+|+.+..+|...|++++|...+++.. ..++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556677777777766643222221 2457777888888888888887776653 1121
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCc
Q 043580 590 ---VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGP 625 (665)
Q Consensus 590 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 625 (665)
...+..++.+|...|++++|+..|++++++.|+...
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 235677889999999999999999999988765443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0015 Score=53.36 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHh----hcCCCCChhH
Q 043580 489 PWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKS----VYNVEPDLKH 560 (665)
Q Consensus 489 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 560 (665)
.+..+...+...|++++|+..+++++... +-+...|..++.+|...|+.++|++.|+++.+ ..|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45566677777777777777777777753 44667777777777777777777777777643 2377776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.19 E-value=0.012 Score=42.61 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=102.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhhcCChHH
Q 043580 497 LAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGRAGQLED 576 (665)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (665)
+...|..++..+++.+... ..+..-|+.++--....-+-+...+.++.+-+-|.+.|-.- ...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 4556888888888888876 34555666666666666677777888888776655555211 2234455554433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 043580 577 AEEVIRSMPMKADVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYADAGRWEDAFSIRKEMRDCGMK 656 (665)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 656 (665)
+....+..+..+..+|.-++-..+++.+.+.+.-+|+....++.+|.+.|...+|-+++.++-+.|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445566777889999999999999988877777888999999999999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.0054 Score=47.16 Aligned_cols=84 Identities=7% Similarity=-0.100 Sum_probs=57.0
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCChhH
Q 043580 571 AGQLEDAEEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQPSHGPSRVLLSNIYAD----AGRWED 642 (665)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 642 (665)
..+.++|.+++++....-++.....|...|.. ..|.++|..+++++.+. .++.....|+.+|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHH
Confidence 34556666666665444455555555555543 34678888888888764 456677888888776 457889
Q ss_pred HHHHHHHHHhCCCc
Q 043580 643 AFSIRKEMRDCGMK 656 (665)
Q Consensus 643 A~~~~~~~~~~~~~ 656 (665)
|.++|+++.+.|..
T Consensus 114 A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 114 AVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCH
Confidence 99999988887753
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.2 Score=47.52 Aligned_cols=332 Identities=11% Similarity=-0.007 Sum_probs=166.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--ccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhc
Q 043580 259 IDGYLQVERLSEALTMYRAMLCDGIAPNDVMIVDLISACGR--AMAFGEGLQIHSIIVKAGFDC-YDFIQATIIHFYAAC 335 (665)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 335 (665)
+....+.|+...+..+...+... | -..|...-..-.. ....++ +...+.+..-.| ........+..+.+.
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~---i~~Fl~~~p~~P~~~~lr~~~l~~L~~~ 85 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVT---VTNFVRANPTLPPARTLQSRFVNELARR 85 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHH---HHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHH---HHHHHHHCCCChhHHHHHHHHHHHHHhc
Confidence 44456678888777777766432 2 2233322222222 222332 333333321111 122233445566666
Q ss_pred CChHHHHHHHHhccCCchhhHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 043580 336 GRINLARLQFELGIKDHIASWNALIAGFIRNGMIEDARQLFNNMQKRDVYSWSAMISGYAQNEQPNMALELFHGMVDAGV 415 (665)
Q Consensus 336 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 415 (665)
++.......+. ..+.+...-..+..+....|+.+.|...+..+=.. ....++.+-.+|+.+...|
T Consensus 86 ~~w~~~~~~~~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~- 150 (450)
T d1qsaa1 86 EDWRGLLAFSP-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASG- 150 (450)
T ss_dssp TCHHHHHHHCC-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTT-
T ss_pred cCHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcC-
Confidence 77665554442 22234444445666666777776666555433110 0112333444444444443
Q ss_pred CCChhHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCcchHHHHH
Q 043580 416 KPNEITMVSVFCAIASSGTLKEGRWAHEYVLNNSITLND-NLSAAIIDMYAKCGSINTAFEVFYHIRDRTTSVSPWNAII 494 (665)
Q Consensus 416 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 494 (665)
.++...+..-+......|+...+..+...+ +++. ......+..... ...+...... ...+......+.
T Consensus 151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~---p~~~~~~~~~---~~~~~~~~~~~~ 219 (450)
T d1qsaa1 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---TGATDFTRQMAA 219 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---SCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhC---hHhHHHHHhc---CCCChhhhHHHH
Confidence 233333333444444455555555544321 2222 222333333222 2222222111 112333333333
Q ss_pred HHHHh--cCChHHHHHHHHHHHHcCCCCChHH----HHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHh
Q 043580 495 CGLAM--HGDANLTLKIYSDLEKRNIKLNSIT----FIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLL 568 (665)
Q Consensus 495 ~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (665)
.++.+ ..+++.+...+....... ..+... ...+.......+..+.+..++...... ..+......++...
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~a 295 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHH
Confidence 33332 357888888888877653 222222 222333444556677777777776543 33445545555556
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 043580 569 GRAGQLEDAEEVIRSMPMKA--DVVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPSRVLLS 631 (665)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 631 (665)
...+++..+...+..+...| ...-..-++.++...|+.+.|...+..+.. .+ ++|-.|+
T Consensus 296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA 356 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA 356 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence 67788999999998887443 234445677888889999999999988864 22 3555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.0022 Score=47.44 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=44.5
Q ss_pred CChhHHHHHhhHhhhcC---ChHHHHHHHHhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCCch
Q 043580 556 PDLKHYGCMVDLLGRAG---QLEDAEEVIRSMP-MKA-D-VVIWGTLLAASRIHGNVEVGERAAKSLAGLQPSHGPS 626 (665)
Q Consensus 556 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 626 (665)
|++.+--..+.++.++. +.++++.+++++. ..| + ...+..|..+|.+.|++++|...++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34455555556665543 4456777776654 223 2 3566667777777777777777777777777777664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.47 Score=44.82 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHchhCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHH
Q 043580 467 CGSINTAFEVFYHIRDRTTSVSPWNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFK 546 (665)
Q Consensus 467 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 546 (665)
.+..+.+...+........+.....-.+......+++..+...+..|.... .-...-.--+..++...|+.+.|..+|.
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 344455555554444433333333333444445556666665555543210 1111222334455566666666666666
Q ss_pred HhHhhcCCCCChhHHHHHhhHhhhcCChHHHHHHHHhCCCCCC-HH---HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 043580 547 SMKSVYNVEPDLKHYGCMVDLLGRAGQLEDAEEVIRSMPMKAD-VV---IWGTLLAASRIHGNVEVGERAAKSLAGLQPS 622 (665)
Q Consensus 547 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 622 (665)
.+.. .++ .|..|... +.|..-. .. .......+. .. .-..-+..+...|....|...+..+.+..
T Consensus 344 ~~a~----~~~--fYG~LAa~--~Lg~~~~-~~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-- 411 (450)
T d1qsaa1 344 QLMQ----QRG--FYPMVAAQ--RIGEEYE-LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-- 411 (450)
T ss_dssp HHHT----SCS--HHHHHHHH--HTTCCCC-CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhc----CCC--hHHHHHHH--HcCCCCC-CC-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--
Confidence 6542 122 23332211 1111000 00 000000000 00 01123445667788888877777776432
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 043580 623 HGPSRVLLSNIYADAGRWEDAFSIRKEM 650 (665)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 650 (665)
++.-...++.+..+.|.++.|+....+.
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 2344666777777888888887666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.77 E-value=0.21 Score=36.11 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhh
Q 043580 490 WNAIICGLAMHGDANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSV 551 (665)
Q Consensus 490 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 551 (665)
+..-+..+...|+-+.-.++++.+.+.+ .|++.....+..+|.+.|+..++.+++.+.-+.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3444455556666666666666655544 566666666666666666666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.57 E-value=0.078 Score=40.27 Aligned_cols=110 Identities=11% Similarity=-0.022 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhhHhhh----cCChHHH
Q 043580 502 DANLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVDLLGR----AGQLEDA 577 (665)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 577 (665)
|+++|+++|++..+.| .+. ....+. .....+.++|.+++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMF--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chh--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 6777888888887776 222 222232 33456778888888887654 3 45555666666654 4578889
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 043580 578 EEVIRSMPMKADVVIWGTLLAASRI----HGNVEVGERAAKSLAGLQ 620 (665)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 620 (665)
.++|++....-++.....|...|.. ..|.++|..+++++.++.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 9998888655667777777777665 458899999999887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.042 Score=40.35 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043580 587 KADVVIWGTLLAASRIHGN---VEVGERAAKSLAGLQPSHG-PSRVLLSNIYADAGRWEDAFSIRKEMRDCGM 655 (665)
Q Consensus 587 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 655 (665)
.|+..+--...+++.++.+ .++|+.+++++...+|.+. ..++.|+.+|.+.|++++|+++++++++...
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3667777788888887654 5789999999988888664 5778999999999999999999999987544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.77 E-value=1.3 Score=30.16 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHhcccChHHHHHHHHHHhHhhcCCCCChhHHHHHhh
Q 043580 504 NLTLKIYSDLEKRNIKLNSITFIGVLSTCCHAGLVDLGERYFKSMKSVYNVEPDLKHYGCMVD 566 (665)
Q Consensus 504 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 566 (665)
-++.+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+ +.++...|..++.
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 345555666666777888888888888888888888888888888764 3344556665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.61 E-value=6 Score=26.87 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 043580 439 RWAHEYVLNNSITLNDNLSAAIIDMYAKCGSINTAFEVFYHIRD 482 (665)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 482 (665)
.+-+..+....+.|++.+..+.++++.+.+++..|.++|+.++.
T Consensus 26 rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 26 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333444444455555555555555555555555555555444
|