Citrus Sinensis ID: 043608
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFI1 | 768 | Pentatricopeptide repeat- | yes | no | 0.996 | 0.751 | 0.547 | 0.0 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.943 | 0.604 | 0.313 | 8e-88 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.982 | 0.645 | 0.312 | 1e-87 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.975 | 0.677 | 0.306 | 4e-86 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.941 | 0.641 | 0.321 | 1e-83 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.937 | 0.510 | 0.309 | 1e-83 | |
| Q9LUS3 | 654 | Pentatricopeptide repeat- | no | no | 0.932 | 0.825 | 0.324 | 3e-83 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.934 | 0.621 | 0.328 | 3e-82 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.982 | 0.639 | 0.296 | 1e-81 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.877 | 0.683 | 0.333 | 5e-81 |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/617 (54%), Positives = 439/617 (71%), Gaps = 40/617 (6%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
ND+++SLCK N Y EAL A+DF+Q N++ +IR TY LI ACSS RSL GRK+HDHIL
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
S C+ D +L NHIL+MYGKCGSL DAR FD MP+RN+VS+T++I G SQN Q +AI+
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182
LY++MLQ ++P QF FGSIIKAC+ V LG+QLHA VIK E SHLIAQNALIAMY
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214
Query: 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242
+F+++ DA VF GI KD+ SW S+IA FS+LG+E EAL H EML G + PNE+IFG
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274
Query: 243 SVFSACS----------------------------------------NFARILFNEIDSP 262
S ACS N AR +F++I+ P
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP 334
Query: 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVH 322
D ASWN +IAG+A++ A+EA+S+FS+MR +PD +++ SLLCA + L QGMQ+H
Sbjct: 335 DTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIH 394
Query: 323 SYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQA 382
SYIIK GF +++ VCN++LTMY CS L +F++ NADSVSWN+I+ ACLQH Q
Sbjct: 395 SYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQP 454
Query: 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442
E+ RLF ML S+ +PDHIT +++ C +++SL++ +Q+HCY KTGLA + F+ NGL
Sbjct: 455 VEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGL 514
Query: 443 MDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502
+D+Y KCGSLG AR++F+ M+N DVVSWS+LI+GYAQ G G+EAL LF M+S G+ PN
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Query: 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562
VT VGVLTACSHVGLVEEGL LY M+ E+GI PT+EHCSCVVDLLARAG ++EAE FI+
Sbjct: 575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFID 634
Query: 563 QMACDADIVVWKSLLAS 579
+M + D+VVWK+LL++
Sbjct: 635 EMKLEPDVVVWKTLLSA 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 190/607 (31%), Positives = 310/607 (51%), Gaps = 61/607 (10%)
Query: 31 IRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90
I T+A ++ CS L LG ++H ++ C DVV + +L+MY K ++
Sbjct: 176 IEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESL 235
Query: 91 MGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150
F +P++N VSW+A+IAGC QN + A+K + +M + Q + S++++C+ L
Sbjct: 236 RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 295
Query: 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIA 210
+ LG QLHAH +KS+ + I + A + MY K D + DA+ +F + S+ +MI
Sbjct: 296 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 355
Query: 211 AFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI---------------- 254
+S+ + +AL F+ ++ G +E VF AC+ +
Sbjct: 356 GYSQEEHGFKALLLFHRLMSSG-LGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLS 414
Query: 255 ------------------------LFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM 290
+F+E+ D SWNA+IA + E + LF M
Sbjct: 415 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 474
Query: 291 RDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350
+ PD T S+L AC G +L GM++HS I+K G SN V +++ MY+KC ++
Sbjct: 475 LRSRIEPDEFTFGSILKACTGG-SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMI 533
Query: 351 CNALLVFKELGKNADS-------------------VSWNSIIAACLQHNQAEELFRLFSR 391
A + + A+ VSWNSII+ + Q+E+ LF+R
Sbjct: 534 EEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTR 593
Query: 392 MLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451
M+ I PD T+ V+ CA +AS + Q+H + K L DV++ + L+D+Y KCG
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGD 653
Query: 452 LGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511
L +R +F D V+W+++I GYA G G+EA++LF RM + PN VT + +L A
Sbjct: 654 LHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRA 713
Query: 512 CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIV 571
C+H+GL+++GL + +M+ +YG+ P H S +VD+L ++G V A + I +M +AD V
Sbjct: 714 CAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDV 773
Query: 572 VWKSLLA 578
+W++LL
Sbjct: 774 IWRTLLG 780
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 193/617 (31%), Positives = 319/617 (51%), Gaps = 48/617 (7%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPS--TYAGLISACSSLRSLQLGRKVHDH 60
N + + K L+ EAL +F ++ P T+ +I AC+ L ++G V++
Sbjct: 75 NSIIRAFSKNGLFPEAL---EFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQ 131
Query: 61 ILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDA 120
IL + D+ + N +++MY + G L AR FD+MP R++VSW ++I+G S + +A
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191
Query: 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAM 180
+++Y ++ S ++P FT S++ A L V G+ LH +KS S ++ N L+AM
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAM 251
Query: 181 YTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240
Y KF R DAR VF + +D S+ +MI + KL E++ F E L ++P+
Sbjct: 252 YLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKPDLLT 309
Query: 241 FGSVFSACSNF----------------------------------------ARILFNEID 260
SV AC + AR +FN ++
Sbjct: 310 VSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME 369
Query: 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQ 320
D SWN++I+G + EAM LF M E D +T L+ L G
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG 429
Query: 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHN 380
+HS IK G ++ V NA++ MYAKC + ++L +F +G D+V+WN++I+AC++
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISACVRFG 488
Query: 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440
++ ++M S++ PD TF + CA +A+ + ++HC + + G ++ + N
Sbjct: 489 DFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGN 548
Query: 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500
L+++Y KCG L ++ ++F M DVV+W+ +I Y +G G++AL+ F M G+ P
Sbjct: 549 ALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVP 608
Query: 501 NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDF 560
+ V + ++ ACSH GLV+EGL + M+ Y I P EH +CVVDLL+R+ + +AE+F
Sbjct: 609 DSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEF 668
Query: 561 INQMACDADIVVWKSLL 577
I M D +W S+L
Sbjct: 669 IQAMPIKPDASIWASVL 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 336/623 (53%), Gaps = 58/623 (9%)
Query: 6 VSSLCKQNLYNEALVAY-DFSQNNTNIRIRPSTY--AGLISACSSL--RSLQLGRKVHDH 60
VS+ +Y E+LV + +F + + P+ Y + I ACS L R + ++
Sbjct: 117 VSACNHHGIYEESLVVFLEFWRTRKD---SPNEYILSSFIQACSGLDGRGRWMVFQLQSF 173
Query: 61 ILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDA 120
++ S DV + +++ Y K G+++ AR+ FD +P+++ V+WT MI+GC + + +
Sbjct: 174 LVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVS 233
Query: 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQ--NALI 178
++L+ Q+++ V+P + +++ ACS L + G+Q+HAH+++ +G + A N LI
Sbjct: 234 LQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR--YGLEMDASLMNVLI 291
Query: 179 AMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNE 238
Y K R++ A +F+G+ K++ SW ++++ + + EA+ F M G +P+
Sbjct: 292 DSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG-LKPDM 350
Query: 239 FIFGSVFSACSNF----------------------------------------ARILFNE 258
+ S+ ++C++ AR +F+
Sbjct: 351 YACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDI 410
Query: 259 IDSPDLASWNALIAG---VASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315
+ D+ +NA+I G + + +EA+++F +MR R + P LT SLL A +L
Sbjct: 411 FAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSL 470
Query: 316 YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAA 375
Q+H + K G + ++ +A++ +Y+ C L ++ LVF E+ K D V WNS+ A
Sbjct: 471 GLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFAG 529
Query: 376 CLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD 435
+Q ++ EE LF + S+ +PD TF +++ A +AS+++ + HC + K GL +
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589
Query: 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495
++ N L+D+Y KCGS A K F+ + DVV W+S+I YA G G +AL++ +M S
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 496 LGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVH 555
G+ PN +T VGVL+ACSH GLVE+GL + +M +GI P EH C+V LL RAG ++
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLN 708
Query: 556 EAEDFINQMACDADIVVWKSLLA 578
+A + I +M +VW+SLL+
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLS 731
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 192/598 (32%), Positives = 315/598 (52%), Gaps = 53/598 (8%)
Query: 33 IRP---STYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDA 89
IRP T++ L+ +C R +LG+ VH ++ +PD VL N ++++Y K G A
Sbjct: 57 IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116
Query: 90 RMGFDKMP---QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC 146
F+ M +R+VVSW+AM+A N +E DAIK++++ L+ G++P + + ++I+AC
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176
Query: 147 SGLGSVCLGRQLHAHVIKSEH-GSHLIAQNALIAMYTKFDRILD-ARNVFSGIARKDVTS 204
S V +GR ++K+ H S + +LI M+ K + + A VF ++ +V +
Sbjct: 177 SNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVT 236
Query: 205 WGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFA------------ 252
W MI ++G+ EA+ F +M+ G ++ ++F SVFSAC+
Sbjct: 237 WTLMITRCMQMGFPREAIRFFLDMVLSG-FESDKFTLSSVFSACAELENLSLGKQLHSWA 295
Query: 253 -----------------------------RILFNEIDSPDLASWNALIAGVASHSN-ANE 282
R +F+ ++ + SW ALI G + N A E
Sbjct: 296 IRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATE 355
Query: 283 AMSLFSEMRDR-ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341
A++LFSEM + + P+ T S AC G QV K G SN V N+++
Sbjct: 356 AINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVI 415
Query: 342 TMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH 401
+M+ K + +A F+ L + + VS+N+ + ++ E+ F+L S + ++
Sbjct: 416 SMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSA 474
Query: 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461
TF ++ A + S+ Q+H + K GL+ + V N L+ +Y KCGS+ +A ++FNF
Sbjct: 475 FTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNF 534
Query: 462 MENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521
MEN +V+SW+S+I G+A+ G L+ F +M GV PN VT V +L+ACSHVGLV EG
Sbjct: 535 MENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594
Query: 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
+ M ++ I P EH +C+VDLL RAG + +A +FIN M AD++VW++ L +
Sbjct: 595 WRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/585 (30%), Positives = 302/585 (51%), Gaps = 42/585 (7%)
Query: 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFD 94
P ++ ++SAC + SL++G ++H +L D + N ++++Y G+L A F
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS 347
Query: 95 KMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCL 154
M QR+ V++ +I G SQ A++L+ +M G+ P T S++ ACS G++
Sbjct: 348 NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR 407
Query: 155 GRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSK 214
G+QLHA+ K S+ + AL+ +Y K I A + F ++V W M+ A+
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL 467
Query: 215 LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNE---------------- 258
L + F +M PN++ + S+ C + E
Sbjct: 468 LDDLRNSFRIFRQM-QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 526
Query: 259 -----ID-------------------SPDLASWNALIAGVASHSNANEAMSLFSEMRDRE 294
ID D+ SW +IAG ++ ++A++ F +M DR
Sbjct: 527 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 586
Query: 295 LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354
+ D + + + + AC G L +G Q+H+ GF S++P NA++T+Y++C + +
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 646
Query: 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414
L F E + D+++WN++++ Q EE R+F RM I ++ TF + A ++
Sbjct: 647 LAF-EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705
Query: 415 ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLI 474
A+++ Q+H ITKTG + V N L+ +Y KCGS+ A K F + + VSW+++I
Sbjct: 706 ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765
Query: 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534
Y++ G G EAL F +M V PN VTLVGVL+ACSH+GLV++G+ + M +EYG+
Sbjct: 766 NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825
Query: 535 IPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
P EH CVVD+L RAG + A++FI +M D +VW++LL++
Sbjct: 826 SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 191/589 (32%), Positives = 301/589 (51%), Gaps = 49/589 (8%)
Query: 38 YAGLISACSSLRSLQLGRKVHDHILLSKC--QPDVVLQNHILNMYGKCGSLEDARMGFDK 95
+ L+ C R+L LG+ +H H+L VL N + +Y C +E AR FD+
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 96 MPQR--NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVC 153
+P N ++W MI + N A+ LY +ML SGV P ++T+ ++KAC+GL ++
Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120
Query: 154 LGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFS 213
G+ +H+HV S+ + + AL+ Y K + A VF + ++D+ +W +MI+ FS
Sbjct: 121 DGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFS 180
Query: 214 KLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSA-------------------------- 247
+ + F +M PN +F A
Sbjct: 181 LHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDL 240
Query: 248 --------------CSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM--R 291
C +AR +F+ + +W+A+I G + EA +F +M
Sbjct: 241 VVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVN 300
Query: 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351
D + + + +L C L G VH Y +K GF ++ V N I++ YAK LC
Sbjct: 301 DNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLC 360
Query: 352 NALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411
+A F E+G D +S+NS+I C+ + + EE FRLF M S I+PD T V+ AC
Sbjct: 361 DAFRQFSEIGLK-DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTAC 419
Query: 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWS 471
+ +A+L + H Y G A + + N LMD+Y KCG L A+++F+ M D+VSW+
Sbjct: 420 SHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWN 479
Query: 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM-EN 530
+++ G+ G G EAL LF M+ GV+P+ VTL+ +L+ACSH GLV+EG L+ M
Sbjct: 480 TMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRG 539
Query: 531 EYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
++ +IP +H +C+ DLLARAG + EA DF+N+M + DI V +LL++
Sbjct: 540 DFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSA 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 193/588 (32%), Positives = 302/588 (51%), Gaps = 47/588 (7%)
Query: 33 IRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMG 92
I P T ++ C+ +SL+ G++V + I + D L + + MY CG L++A
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 93 FDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSV 152
FD++ + W ++ +++ + +I L+ +M+ SGV +TF + K+ S L SV
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211
Query: 153 CLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAF 212
G QLH ++KS G N+L+A Y K R+ AR VF + +DV SW S+I +
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271
Query: 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNF--------------------- 251
G + L F +ML G + + SVF+ C++
Sbjct: 272 VSNGLAEKGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 330
Query: 252 -------------------ARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRD 292
A+ +F E+ + S+ ++IAG A A EA+ LF EM +
Sbjct: 331 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 293 RELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIK--MGFDSNVPVCNAILTMYAKCSVL 350
+ PD TV ++L C L +G +VH +I + +GFD + V NA++ MYAKC +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD--IFVSNALMDMYAKCGSM 448
Query: 351 CNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMG 409
A LVF E+ + D +SWN+II ++ A E LF+ +L + PD T V+
Sbjct: 449 QEAELVFSEM-RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507
Query: 410 ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVS 469
ACA +++ + ++H YI + G D V N L+D+Y KCG+L A LF+ + + D+VS
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567
Query: 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529
W+ +I GY G G EA+ LF +MR G+ + ++ V +L ACSH GLV+EG + IM
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627
Query: 530 NEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLL 577
+E I PT EH +C+VD+LAR G + +A FI M D +W +LL
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/637 (29%), Positives = 327/637 (51%), Gaps = 68/637 (10%)
Query: 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYA--GLISACSSLRSLQLGRKVHDHI 61
D + S + NL EA++ Y + + I+P YA L+ A + L+ ++LG+++H H+
Sbjct: 67 DLLRSKVRSNLLREAVLTY---VDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 62 LLSKCQPD-VVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDA 120
D V + N ++N+Y KCG FD++ +RN VSW ++I+ + A
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183
Query: 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLG---SVCLGRQLHAHVI-KSEHGSHLIAQNA 176
++ + ML V P FT S++ ACS L + +G+Q+HA+ + K E S +I N
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NT 241
Query: 177 LIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236
L+AMY K ++ ++ + +D+ +W +++++ + LEAL + EM+ G +P
Sbjct: 242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV-EP 300
Query: 237 NEFIFGSVFSACSNF-----------------------------------------ARIL 255
+EF SV ACS+ R +
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRE-LLPDGLTVHSLLCACIGRLT 314
F+ + + WNA+IAG + + + EA+ LF M + LL + T+ ++ AC+
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 315 LYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIA 374
+ +H +++K G D + V N ++ MY++ + A+ +F ++ ++ D V+WN++I
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM-EDRDLVTWNTMIT 479
Query: 375 ACLQHNQAEELFRLFSRML---------ASQI--KPDHITFNDVMGACAKMASLEMVTQL 423
+ E+ L +M AS++ KP+ IT ++ +CA +++L ++
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
Query: 424 HCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCG 483
H Y K LA DV V + L+D+Y KCG L +RK+F+ + +V++W+ +I+ Y G G
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599
Query: 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543
EA+ L M GV PN VT + V ACSH G+V+EGL ++ +M+ +YG+ P+ +H +C
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659
Query: 544 VVDLLARAGCVHEAEDFINQMACDADIV-VWKSLLAS 579
VVDLL RAG + EA +N M D + W SLL +
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 183/548 (33%), Positives = 284/548 (51%), Gaps = 40/548 (7%)
Query: 35 PST--YAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMG 92
P T Y ++ A + ++S R+V D I QP++ N++L Y K G + +
Sbjct: 39 PETFLYNNIVHAYALMKSSTYARRVFDRI----PQPNLFSWNNLLLAYSKAGLISEMEST 94
Query: 93 FDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQS-GVMPGQFTFGSIIKACSGLGS 151
F+K+P R+ V+W +I G S + A+K Y M++ + T +++K S G
Sbjct: 95 FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154
Query: 152 VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAA 211
V LG+Q+H VIK S+L+ + L+ MY I DA+ VF G+ ++ + S++
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214
Query: 212 FSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI 271
G +AL F M D SW A+I
Sbjct: 215 LLACGMIEDALQLFRGM--------------------------------EKDSVSWAAMI 242
Query: 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD 331
G+A + A EA+ F EM+ + L D S+L AC G + +G Q+H+ II+ F
Sbjct: 243 KGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ 302
Query: 332 SNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSR 391
++ V +A++ MY KC L A VF + K + VSW +++ Q +AEE ++F
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRM-KQKNVVSWTAMVVGYGQTGRAEEAVKIFLD 361
Query: 392 MLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451
M S I PDH T + ACA ++SLE +Q H +GL V V N L+ +Y KCG
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421
Query: 452 LGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511
+ + +LFN M D VSW++++ YAQFG E ++LF +M G+ P+ VTL GV++A
Sbjct: 422 IDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISA 481
Query: 512 CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIV 571
CS GLVE+G +++M +EYGI+P+ H SC++DL +R+G + EA FIN M D +
Sbjct: 482 CSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAI 541
Query: 572 VWKSLLAS 579
W +LL++
Sbjct: 542 GWTTLLSA 549
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| 147784524 | 763 | hypothetical protein VITISV_032420 [Viti | 0.998 | 0.757 | 0.614 | 0.0 | |
| 359481513 | 755 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.765 | 0.614 | 0.0 | |
| 449440387 | 792 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.728 | 0.564 | 0.0 | |
| 449518693 | 792 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.728 | 0.564 | 0.0 | |
| 356503704 | 855 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.676 | 0.564 | 0.0 | |
| 356570738 | 777 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.742 | 0.559 | 0.0 | |
| 15231798 | 768 | pentatricopeptide repeat-containing prot | 0.996 | 0.751 | 0.547 | 0.0 | |
| 297816638 | 769 | pentatricopeptide repeat-containing prot | 0.996 | 0.750 | 0.544 | 0.0 | |
| 357510605 | 887 | Pentatricopeptide repeat-containing prot | 0.998 | 0.651 | 0.533 | 0.0 | |
| 115468242 | 766 | Os06g0506100 [Oryza sativa Japonica Grou | 0.934 | 0.706 | 0.491 | 1e-161 |
| >gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/618 (61%), Positives = 462/618 (74%), Gaps = 40/618 (6%)
Query: 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHI 61
SN+Y+++LCKQ L+NEA+ A++F Q T + STYA LISACS LRSL+ GRK+HDH+
Sbjct: 30 SNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHM 89
Query: 62 LLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121
L SK PD+ LQNHILNMYGKCGSL+DA+ FD MP+RNVVSWT++IAG SQN Q +A+
Sbjct: 90 LKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNAL 149
Query: 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181
+ Y QMLQSGVMP QFTFGSIIKACS LG + LGRQLHAHV+KSE G+H+IAQNALI+MY
Sbjct: 150 EFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMY 209
Query: 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF 241
TK + I+DA +VFS +A +D+ SWGSMIA FS+LGYELEALC+F EMLH G Y PNEFIF
Sbjct: 210 TKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269
Query: 242 GSVFSACSNF----------------------------------------ARILFNEIDS 261
GSVFSACS+ AR++F +I
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQV 321
PDL +WNA+IAG A +A EA++ FS+MR + L+PD +TV SLLCAC LYQGMQV
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389
Query: 322 HSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQ 381
H YI KMG D +VPVCN +LTMYAKCS L +A+ F+E+ NAD VSWN+I+ AC+ H+Q
Sbjct: 390 HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQ 449
Query: 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441
AEE+F L M SQ +PD+IT +V+GA A+ S+E+ Q+HCY KTGL D+ V NG
Sbjct: 450 AEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNG 509
Query: 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
L+D+Y KCGSL +ARK+F+ + NPDVVSWSSLILGYAQFG G+EALKLF MR L V PN
Sbjct: 510 LIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPN 569
Query: 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561
VT VGVLTACSHVGLVEEG LY ME E+GI+PTREHCSC+VDLLARAGC++EAE FI
Sbjct: 570 HVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFI 629
Query: 562 NQMACDADIVVWKSLLAS 579
+QMA D DIVVWK+LLA+
Sbjct: 630 HQMAFDPDIVVWKTLLAA 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/618 (61%), Positives = 460/618 (74%), Gaps = 40/618 (6%)
Query: 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHI 61
SN+Y++SLCKQ L+NEA+ A++F Q T + STYA LISACS LRSL+ G+K+HDH+
Sbjct: 30 SNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHM 89
Query: 62 LLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121
L SK PD+ LQNHILNMYGKC SL+DA+ FD MP+RNVVSWT++IAG SQN Q +A+
Sbjct: 90 LKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNAL 149
Query: 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181
+ Y QMLQSGVMP QFTFGSIIKACS LG + LGRQLHAHV+KSE G+H+IAQNALI+MY
Sbjct: 150 EFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMY 209
Query: 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF 241
TK + I+DA +VFS +A +D+ SWGSMIA FS+LGYELEALC+F EMLH G Y PNEFIF
Sbjct: 210 TKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269
Query: 242 GSVFSACSNF----------------------------------------ARILFNEIDS 261
GSVFSACS+ AR++F +I
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQV 321
PDL +WNA+IAG A +A EA++ FS+MR + L+PD +TV SLLCAC LYQGMQV
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389
Query: 322 HSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQ 381
H YI KMG D +VPVCN +LTMYAKCS L +A+ F+E+ NAD VSWN+I+ AC++H+Q
Sbjct: 390 HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ 449
Query: 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441
AEE+FRL M SQ +PD+IT +V+GA A+ S+E+ Q+HCY KTGL D V NG
Sbjct: 450 AEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNG 509
Query: 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
L+D+Y KCGSL +A K+F+ M NPDVVSWSSLILGYAQFG G+EALKLF MR L V PN
Sbjct: 510 LIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPN 569
Query: 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561
VT VGVLTACSHVGLVEEG LY ME E+GI PTREHCSC+VDLLARAGC++EAE FI
Sbjct: 570 HVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFI 629
Query: 562 NQMACDADIVVWKSLLAS 579
+QMA D DIVVWK+LLA+
Sbjct: 630 HQMAFDPDIVVWKTLLAA 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/617 (56%), Positives = 448/617 (72%), Gaps = 40/617 (6%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
+D + SLCK+NL+ EAL A+D Q ++ ++ TY LI+ACSSLRSL+ GRK+H H+L
Sbjct: 66 DDKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHML 125
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
QPD++LQNHIL+MYGKCGSL++AR FD MP +NVVSWT+MI+G S+ +E++AI
Sbjct: 126 TCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAIT 185
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182
LY+QML+SG +P FTFGSI+K+CSGL L RQLHAHV+KSE G+ LIAQNALI+MYT
Sbjct: 186 LYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYT 245
Query: 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242
KF ++ DA NVFS I KD+ SWGSMIA FS+LGYELEALCHF EML YQPNEF+FG
Sbjct: 246 KFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFG 305
Query: 243 SVFSACSNF----------------------------------------ARILFNEIDSP 262
S FSACS AR +F I+ P
Sbjct: 306 SAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKP 365
Query: 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVH 322
DL +WNA+IAG AS SNA E+ S FS+MR L+P+ +TV SLLCAC + L G+QVH
Sbjct: 366 DLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVH 425
Query: 323 SYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQA 382
SYI+KMGF+ ++PVCN++L+MY+KCS L +AL VF+++G AD VSWN+++ ACLQ NQA
Sbjct: 426 SYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQA 485
Query: 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442
E+ RL M AS+IKPDH+T +V+ + ++AS E+ +Q+HC+I K+GL D+ V N L
Sbjct: 486 GEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNAL 545
Query: 443 MDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502
+++Y KCGSL ARK+F+ + NPD++SWSSLI+GYAQ GCG EA +LF MR LGV PN
Sbjct: 546 INMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNE 605
Query: 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562
+T VG+LTACSH+G+VEEGL LYR M+ +Y I PT+EHCSC+VDLLARAGC+ AEDFI
Sbjct: 606 ITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIK 665
Query: 563 QMACDADIVVWKSLLAS 579
QM D+VVWK+LLA+
Sbjct: 666 QMPFVPDVVVWKTLLAA 682
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/617 (56%), Positives = 448/617 (72%), Gaps = 40/617 (6%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
+D + SLCK+NL+ EAL A+D Q ++ ++ TY LI+ACSSLRSL+ GRK+H H+L
Sbjct: 66 DDKIISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHML 125
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
QPD++LQNHIL+MYGKCGSL++AR FD MP +NVVSWT+MI+G S+ +E++AI
Sbjct: 126 TCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAIT 185
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182
LY+QML+SG +P FTFGSI+K+CSGL L RQLHAHV+KSE G+ LIAQNALI+MYT
Sbjct: 186 LYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYT 245
Query: 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242
KF ++ DA NVFS I KD+ SWGSMIA FS+LGYELEALCHF EML YQPNEF+FG
Sbjct: 246 KFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFG 305
Query: 243 SVFSACSNF----------------------------------------ARILFNEIDSP 262
S FSACS AR +F I+ P
Sbjct: 306 SAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKP 365
Query: 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVH 322
DL +WNA+IAG AS SNA E+ S FS+MR L+P+ +TV SLLCAC + L G+QVH
Sbjct: 366 DLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVH 425
Query: 323 SYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQA 382
SYI+KMGF+ ++PVCN++L+MY+KCS L +AL VF+++G AD VSWN+++ ACLQ NQA
Sbjct: 426 SYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQA 485
Query: 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442
E+ RL M AS+IKPDH+T +V+ + ++AS E+ +Q+HC+I K+GL D+ V N L
Sbjct: 486 GEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNAL 545
Query: 443 MDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502
+++Y KCGSL ARK+F+ + NPD++SWSSLI+GYAQ GCG EA +LF MR LGV PN
Sbjct: 546 INMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNE 605
Query: 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562
+T VG+LTACSH+G+VEEGL LYR M+ +Y I PT+EHCSC+VDLLARAGC+ AEDFI
Sbjct: 606 ITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIR 665
Query: 563 QMACDADIVVWKSLLAS 579
QM D+VVWK+LLA+
Sbjct: 666 QMPFVPDVVVWKTLLAA 682
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/618 (56%), Positives = 436/618 (70%), Gaps = 40/618 (6%)
Query: 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHI 61
+N Y++ +CKQ Y EAL ++F N++I++ STY LI AC+S+RSL+ G+K+HDHI
Sbjct: 124 TNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHI 183
Query: 62 LLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121
L S CQPD+VLQNHILNMYGKCGSL+DAR FD M RNVVSWT MI+G SQN QENDAI
Sbjct: 184 LKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAI 243
Query: 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181
+YIQMLQSG P TFGSIIKAC G + LGRQLH HVIKS + HLIAQNALI+MY
Sbjct: 244 IMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMY 303
Query: 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF 241
T+F +I+ A +VF+ I+ KD+ SW SMI F++LGYE+EAL F +M G YQPNEFIF
Sbjct: 304 TRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIF 363
Query: 242 GSVFSAC-----SNFARIL-----------------------------------FNEIDS 261
GSVFSAC F R + F +I+S
Sbjct: 364 GSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIES 423
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQV 321
PDL SWNA+IA + + NEA+ F +M L+PDG+T SLLCAC +T+ QG Q+
Sbjct: 424 PDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQI 483
Query: 322 HSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQ 381
HSYIIK+G D VCN++LTMY KCS L +A VFK++ +NA+ VSWN+I++ACLQH Q
Sbjct: 484 HSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQ 543
Query: 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441
A E+FRLF ML S+ KPD+IT ++G CA++ASLE+ Q+HC+ K+GL DV V N
Sbjct: 544 AGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNR 603
Query: 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
L+D+Y KCGSL AR +F +NPD+VSWSSLI+GYAQFG G EAL LF M++LGV PN
Sbjct: 604 LIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPN 663
Query: 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561
VT +GVL+ACSH+GLVEEG H Y ME E GI PTREH SC+VDLLARAGC++EAE+FI
Sbjct: 664 EVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFI 723
Query: 562 NQMACDADIVVWKSLLAS 579
+M + DI +WK+LLAS
Sbjct: 724 KKMGFNPDITMWKTLLAS 741
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/618 (55%), Positives = 434/618 (70%), Gaps = 41/618 (6%)
Query: 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHI 61
+N Y++ +CKQ Y EAL ++F N++I++ PSTY LI AC+++RSL+ G+++HDHI
Sbjct: 47 TNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHI 106
Query: 62 LLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121
L S CQPD+VLQNHILNMYGKCGSL+DAR FD M R+VVSWT MI+G SQN QENDAI
Sbjct: 107 LKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAI 166
Query: 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181
+YIQML+SG P Q TFGSIIKAC G + LG QLH HVIKS + HLIAQNALI+MY
Sbjct: 167 IMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMY 226
Query: 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF 241
TKF +I A +VF+ I+ KD+ SW SMI F++LGYE+EAL F +M G YQPNEFIF
Sbjct: 227 TKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIF 286
Query: 242 GSVFSACSNF----------------------------------------ARILFNEIDS 261
GSVFSAC + A+ F +I+S
Sbjct: 287 GSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIES 346
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQV 321
PDL SWNA+IA +A+ S+ NEA+ F +M L+PD +T +LLCAC +TL QGMQ+
Sbjct: 347 PDLVSWNAIIAALAN-SDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQI 405
Query: 322 HSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQ 381
HSYIIKMG D VCN++LTMY KCS L +A VFK++ +N + VSWN+I++AC QH Q
Sbjct: 406 HSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQ 465
Query: 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441
E FRLF ML S+ KPD+IT ++G CA++ SLE+ Q+HC+ K+GL DV V N
Sbjct: 466 PGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNR 525
Query: 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
L+D+Y KCG L AR +F+ +NPD+VSWSSLI+GYAQFG G EAL LF MR+LGV PN
Sbjct: 526 LIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPN 585
Query: 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561
VT +GVL+ACSH+GLVEEG HLY ME E GI PTREH SC+VDLLARAGC++EAE+FI
Sbjct: 586 EVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFI 645
Query: 562 NQMACDADIVVWKSLLAS 579
+ D DI +WK+LLAS
Sbjct: 646 KKTGFDPDITMWKTLLAS 663
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; Flags: Precursor gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/617 (54%), Positives = 439/617 (71%), Gaps = 40/617 (6%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
ND+++SLCK N Y EAL A+DF+Q N++ +IR TY LI ACSS RSL GRK+HDHIL
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
S C+ D +L NHIL+MYGKCGSL DAR FD MP+RN+VS+T++I G SQN Q +AI+
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182
LY++MLQ ++P QF FGSIIKAC+ V LG+QLHA VIK E SHLIAQNALIAMY
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214
Query: 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242
+F+++ DA VF GI KD+ SW S+IA FS+LG+E EAL H EML G + PNE+IFG
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274
Query: 243 SVFSACS----------------------------------------NFARILFNEIDSP 262
S ACS N AR +F++I+ P
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP 334
Query: 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVH 322
D ASWN +IAG+A++ A+EA+S+FS+MR +PD +++ SLLCA + L QGMQ+H
Sbjct: 335 DTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIH 394
Query: 323 SYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQA 382
SYIIK GF +++ VCN++LTMY CS L +F++ NADSVSWN+I+ ACLQH Q
Sbjct: 395 SYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQP 454
Query: 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442
E+ RLF ML S+ +PDHIT +++ C +++SL++ +Q+HCY KTGLA + F+ NGL
Sbjct: 455 VEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGL 514
Query: 443 MDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502
+D+Y KCGSLG AR++F+ M+N DVVSWS+LI+GYAQ G G+EAL LF M+S G+ PN
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Query: 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562
VT VGVLTACSHVGLVEEGL LY M+ E+GI PT+EHCSCVVDLLARAG ++EAE FI+
Sbjct: 575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFID 634
Query: 563 QMACDADIVVWKSLLAS 579
+M + D+VVWK+LL++
Sbjct: 635 EMKLEPDVVVWKTLLSA 651
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/617 (54%), Positives = 440/617 (71%), Gaps = 40/617 (6%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
ND+++SLC+ + Y EAL A+DF+Q N++ +IR TY LI ACSS RSL GRK+HDHIL
Sbjct: 32 NDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 91
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
S C+ D +L NHIL+MYGKCGSL DAR FD MP+RN+VS+T++I G SQN QE +AI
Sbjct: 92 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAIT 151
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182
LY++MLQ+ ++P QF FGSIIKAC+ G V LG+QLHA VIK E SHLIAQNALIAMY
Sbjct: 152 LYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYV 211
Query: 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242
+F+++ DA VF GI KD+ SW S+IA FS+LG+E EAL H EML G + PNE+IFG
Sbjct: 212 RFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 271
Query: 243 SVFSACSNF----------------------------------------ARILFNEIDSP 262
S ACS+ AR +FN+I+ P
Sbjct: 272 SSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERP 331
Query: 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVH 322
D ASWN +IAG+A++ A+EA+S+FSEMR+ +PD +++ SLLCA + L QGMQ+H
Sbjct: 332 DTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIH 391
Query: 323 SYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQA 382
S+IIK GF +++ VCN++LTMY CS L +F++ ADSVSWN+I+ ACLQH Q
Sbjct: 392 SFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQP 451
Query: 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442
E+ RLF ML S+ +PDHIT +++ C +++SL++ +Q+HCY KTGL + F+ NGL
Sbjct: 452 VEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGL 511
Query: 443 MDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502
+D+Y KCGSL AR++F+ M+N DVVSWS+LI+GYAQ G G+EAL LF M+S G+ PN
Sbjct: 512 IDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNH 571
Query: 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562
VT VGVLTACSHVGLVEEGL LY IM+ E+GI PT+EHCSCVVDLLARAG ++EAE FI+
Sbjct: 572 VTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFID 631
Query: 563 QMACDADIVVWKSLLAS 579
+M + D+VVWK+LL++
Sbjct: 632 EMKLEPDVVVWKTLLSA 648
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/618 (53%), Positives = 418/618 (67%), Gaps = 40/618 (6%)
Query: 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHI 61
+N Y+ LCKQ+ Y EAL A+DF N+N PSTY L+ AC++ RSL +K+HDH+
Sbjct: 126 TNSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHV 185
Query: 62 LLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121
L S QP ++LQNH++NMYGKCGS++DAR FD M NVVSWT+MI+G SQN Q NDAI
Sbjct: 186 LKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAI 245
Query: 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181
+YIQM +SG P Q TFGS+IKAC G + LGRQLHAHVIKS G HL +QNALI+MY
Sbjct: 246 IMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMY 305
Query: 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF 241
T F +I A NVF+ I KD+ SWG+MI + +LGY +EAL F ++L G YQPNEFIF
Sbjct: 306 TNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIF 365
Query: 242 GSVFSACSNF----------------------------------------ARILFNEIDS 261
GSVFSACS+ A++ F +I +
Sbjct: 366 GSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKN 425
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQV 321
PD+ SWNA+IA A + +ANEA+ F +M L PD +T SLLC C + L QG Q+
Sbjct: 426 PDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQI 485
Query: 322 HSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQ 381
HSYI+K+GFD + VCN++LTMY KCS L +AL VF+++ +NA+ VSWN+I++ACLQ Q
Sbjct: 486 HSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQ 545
Query: 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441
E FRL+ M S KPD IT ++G CA++ SL + Q+HCY K+GL DV V NG
Sbjct: 546 EGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNG 605
Query: 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
L+D+Y KCGSL AR +F+ +N D+VSWSSLI+GYAQ G G EAL LF M +LGV PN
Sbjct: 606 LIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPN 665
Query: 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561
VT +G L+ACSH+GLVEEG LY+ ME E+GI PTREH SC+VDLLARAGC+HEAE FI
Sbjct: 666 EVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFI 725
Query: 562 NQMACDADIVVWKSLLAS 579
+ DADI WK+LLA+
Sbjct: 726 QKSGLDADITAWKTLLAA 743
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group] gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/590 (49%), Positives = 379/590 (64%), Gaps = 49/590 (8%)
Query: 38 YAGLISACSSLRSLQLGRKVHDHILLSKCQ-PD------VVLQNHILNMYGKCGSLEDAR 90
YA L+SACS LRSL GR+VH H++ S PD VL NH++ MYG+C + + AR
Sbjct: 47 YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106
Query: 91 MGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150
FD+MP RN VSW ++IA QN + DA+ L+ ML+SG QF GS ++AC+ LG
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166
Query: 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIA 210
V GRQ+HAH +KSE GS LI QNAL+ MY+K + D +F I KD+ SWGS+IA
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226
Query: 211 AFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACS--------------------- 249
F++ G+E+EAL F EM+ G++ PNEF FGS F AC
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286
Query: 250 -------------------NFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM 290
+ AR+ F I++PDL SWN+++ + +EA+ LFSEM
Sbjct: 287 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346
Query: 291 RDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350
RD L PDG+TV LLCAC+GR LY G +HSY++K+G D +V VCN++L+MYA+CS L
Sbjct: 347 RDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDL 406
Query: 351 CNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410
+A+ VF E+ K+ D V+WNSI+ AC QHN EE+ +LFS + S+ D I+ N+V+ A
Sbjct: 407 SSAMDVFHEI-KDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSA 465
Query: 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM-ENPDVVS 469
A++ EMV Q+H Y K GL D + N L+D Y KCGSL A +LF M N DV S
Sbjct: 466 SAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFS 525
Query: 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529
WSSLI+GYAQFG EA LF+RMRSLG+ PN VT +GVLTACS VG V EG + Y IME
Sbjct: 526 WSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIME 585
Query: 530 NEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
EYGI+PTREHCSC+VDLLARAG + EA +FI+QM + DI++WK+LLA+
Sbjct: 586 PEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAA 635
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.701 | 0.528 | 0.486 | 1.8e-103 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.575 | 0.509 | 0.379 | 1.7e-84 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.590 | 0.352 | 0.346 | 5.5e-83 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.656 | 0.426 | 0.312 | 8.5e-82 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.556 | 0.371 | 0.340 | 1.7e-81 | |
| TAIR|locus:2088827 | 700 | AT3G26540 [Arabidopsis thalian | 0.561 | 0.464 | 0.306 | 2.6e-77 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.566 | 0.329 | 0.344 | 4.5e-77 | |
| TAIR|locus:2132452 | 686 | AT4G08210 "AT4G08210" [Arabido | 0.576 | 0.486 | 0.309 | 1.2e-75 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.887 | 0.604 | 0.320 | 2.5e-72 | |
| TAIR|locus:2164880 | 710 | EMB2744 "EMBRYO DEFECTIVE 2744 | 0.573 | 0.467 | 0.326 | 1.4e-70 |
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 205/421 (48%), Positives = 295/421 (70%)
Query: 171 LIAQNALIAMYTK----FDRILDARNVFS-GIARKDVTSWGSMIAAFSKL-----GYELE 220
LI+ +++IA +++ F+ + + + S G+ + +GS + A S L G ++
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 293
Query: 221 ALCHFNEMLHHGAYQPNEFIFGSVFSACS--NFARILFNEIDSPDLASWNALIAGVASHS 278
LC +E+ + + +++ C N AR +F++I+ PD ASWN +IAG+A++
Sbjct: 294 GLCIKSELAGNAIAGCS---LCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNG 350
Query: 279 NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN 338
A+EA+S+FS+MR +PD +++ SLLCA + L QGMQ+HSYIIK GF +++ VCN
Sbjct: 351 YADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCN 410
Query: 339 AILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK 398
++LTMY CS L +F++ NADSVSWN+I+ ACLQH Q E+ RLF ML S+ +
Sbjct: 411 SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECE 470
Query: 399 PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458
PDHIT +++ C +++SL++ +Q+HCY KTGLA + F+ NGL+D+Y KCGSLG AR++
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRI 530
Query: 459 FNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518
F+ M+N DVVSWS+LI+GYAQ G G+EAL LF M+S G+ PN VT VGVLTACSHVGLV
Sbjct: 531 FDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLV 590
Query: 519 EEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLA 578
EEGL LY M+ E+GI PT+EHCSCVVDLLARAG ++EAE FI++M + D+VVWK+LL+
Sbjct: 591 EEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLS 650
Query: 579 S 579
+
Sbjct: 651 A 651
|
|
| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 128/337 (37%), Positives = 195/337 (57%)
Query: 246 SACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM--RDRELLPDGLTVH 303
S C +AR +F+ + +W+A+I G + EA +F +M D + + +
Sbjct: 253 SKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIG 312
Query: 304 SLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN 363
+L C L G VH Y +K GF ++ V N I++ YAK LC+A F E+G
Sbjct: 313 LILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLK 372
Query: 364 ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423
D +S+NS+I C+ + + EE FRLF M S I+PD T V+ AC+ +A+L +
Sbjct: 373 -DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSC 431
Query: 424 HCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCG 483
H Y G A + + N LMD+Y KCG L A+++F+ M D+VSW++++ G+ G G
Sbjct: 432 HGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLG 491
Query: 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN-EYGIIPTREHCS 542
EAL LF M+ GV+P+ VTL+ +L+ACSH GLV+EG L+ M ++ +IP +H +
Sbjct: 492 KEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYN 551
Query: 543 CVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
C+ DLLARAG + EA DF+N+M + DI V +LL++
Sbjct: 552 CMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSA 588
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 5.5e-83, Sum P(2) = 5.5e-83
Identities = 121/349 (34%), Positives = 202/349 (57%)
Query: 237 NEFI---FGSVFSACSN--FARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291
NE + F + ++ C + +A+ +F+ I S + SWNALI G A ++ ++ +M+
Sbjct: 429 NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMK 488
Query: 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351
LLPD TV SLL AC +L G +VH +II+ + ++ V ++L++Y C LC
Sbjct: 489 ISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELC 548
Query: 352 NALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411
+F + ++ VSWN++I LQ+ + +F +M+ I+ I+ V GAC
Sbjct: 549 TVQALFDAM-EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWS 471
+ + SL + + H Y K L D F+ L+D+Y K GS+ + K+FN ++ SW+
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667
Query: 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531
++I+GY G EA+KLF M+ G +P+ +T +GVLTAC+H GL+ EGL M++
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS 727
Query: 532 YGIIPTREHCSCVVDLLARAGCVHEAEDFI-NQMACDADIVVWKSLLAS 579
+G+ P +H +CV+D+L RAG + +A + +M+ +AD+ +WKSLL+S
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSS 776
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 8.5e-82, Sum P(2) = 8.5e-82
Identities = 128/410 (31%), Positives = 217/410 (52%)
Query: 193 VFSGIARKDVTSWGSMIAAFSKL-----GYELEALCHFNEMLHHGAYQPNEFIFGSVFSA 247
V G+ + T S++ A S L G EL A L +G+ N F+ ++
Sbjct: 294 VLEGVEPDEFTI-SSVLPACSHLEMLRTGKELHAYA-----LKNGSLDENSFVGSALVDM 347
Query: 248 CSNFARIL-----FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRE-LLPDGLT 301
N ++L F+ + + WNA+IAG + + + EA+ LF M + LL + T
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTT 407
Query: 302 VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG 361
+ ++ AC+ + +H +++K G D + V N ++ MY++ + A+ +F ++
Sbjct: 408 MAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM- 466
Query: 362 KNADSVSWNSIIAACLQHNQAEELFRLFSRML---------ASQI--KPDHITFNDVMGA 410
++ D V+WN++I + E+ L +M AS++ KP+ IT ++ +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526
Query: 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSW 470
CA +++L ++H Y K LA DV V + L+D+Y KCG L +RK+F+ + +V++W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586
Query: 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530
+ +I+ Y G G EA+ L M GV PN VT + V ACSH G+V+EGL ++ +M+
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646
Query: 531 EYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIV-VWKSLLAS 579
+YG+ P+ +H +CVVDLL RAG + EA +N M D + W SLL +
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 1.7e-81, Sum P(2) = 1.7e-81
Identities = 111/326 (34%), Positives = 183/326 (56%)
Query: 252 ARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311
A LF+ ++ D+ SW +I+G + ++A+ + M + PD +TV ++L AC
Sbjct: 351 AEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACAT 410
Query: 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNS 371
L G+++H IK S V V N ++ MY+KC + AL +F + + + +SW S
Sbjct: 411 LGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK-NVISWTS 469
Query: 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431
IIA +N+ E +F R + ++P+ IT + ACA++ +L ++H ++ +TG
Sbjct: 470 IIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528
Query: 432 LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFT 491
+ D F+ N L+D+Y++CG + +A FN + DV SW+ L+ GY++ G G ++LF
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFD 587
Query: 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551
RM V P+ +T + +L CS +V +GL + ME +YG+ P +H +CVVDLL RA
Sbjct: 588 RMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRA 646
Query: 552 GCVHEAEDFINQMACDADIVVWKSLL 577
G + EA FI +M D VW +LL
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALL 672
|
|
| TAIR|locus:2088827 AT3G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 2.6e-77, Sum P(2) = 2.6e-77
Identities = 100/326 (30%), Positives = 169/326 (51%)
Query: 242 GSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLT 301
G S + AR LF+ + ++ SWNA++ G +EA+ + MR D +T
Sbjct: 338 GYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVT 397
Query: 302 VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG 361
+ +L C G + G Q H +I + G+D+NV V NA+L MY KC L +A + F+++
Sbjct: 398 LVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMS 457
Query: 362 KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVT 421
+ D VSWN+++ + ++E+ F M + KP T ++ CA + +L +
Sbjct: 458 ELRDEVSWNALLTGVARVGRSEQALSFFEGMQV-EAKPSKYTLATLLAGCANIPALNLGK 516
Query: 422 QLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG 481
+H ++ + G DV + ++D+Y KC A ++F D++ W+S+I G + G
Sbjct: 517 AIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNG 576
Query: 482 CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC 541
E +LF + + GV P+ VT +G+L AC G VE G + M +Y I P EH
Sbjct: 577 RSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHY 636
Query: 542 SCVVDLLARAGCVHEAEDFINQMACD 567
C+++L + GC+H+ E+F+ M D
Sbjct: 637 DCMIELYCKYGCLHQLEEFLLLMPFD 662
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 4.5e-77, Sum P(2) = 4.5e-77
Identities = 115/334 (34%), Positives = 185/334 (55%)
Query: 250 NFARILFNEIDSPDLASWNALIAGVA-SHSNANEAMSLF-SEMRDRELLPDGLTVHSLLC 307
N R +F+ + D SWN++I +A S + EA+ F + R + L + +T S+L
Sbjct: 467 NECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKL-NRITFSSVLS 525
Query: 308 ACIGRLTLYQ-GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADS 366
A + L+ + G Q+H +K NA++ Y KC + +F + + D+
Sbjct: 526 A-VSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDN 584
Query: 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426
V+WNS+I+ + + + L ML + + D + V+ A A +A+LE ++H
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHAC 644
Query: 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEA 486
+ L DV V + L+D+Y KCG L A + FN M + SW+S+I GYA+ G G+EA
Sbjct: 645 SVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEA 704
Query: 487 LKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVV 545
LKLF M+ G +P + VT VGVL+ACSH GL+EEG + M + YG+ P EH SC+
Sbjct: 705 LKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764
Query: 546 DLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
D+L RAG + + EDFI +M ++++W+++L +
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGA 798
|
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| TAIR|locus:2132452 AT4G08210 "AT4G08210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 106/342 (30%), Positives = 188/342 (54%)
Query: 244 VFSACSN--FARILFNE----IDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLP 297
++S C + +A +F++ ++S +A WN++++G + A+ L ++ +L
Sbjct: 282 MYSNCGSLIYAADVFHQEKLAVNS-SVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCF 340
Query: 298 DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVF 357
D T+ L CI + L G+QVHS ++ G++ + V + ++ ++A + +A +F
Sbjct: 341 DSYTLSGALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLF 400
Query: 358 KELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASL 417
L N D ++++ +I C++ F LF ++ + D ++++ C+ +ASL
Sbjct: 401 HRL-PNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASL 459
Query: 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGY 477
Q+H K G + L+D+Y+KCG + + LF+ M DVVSW+ +I+G+
Sbjct: 460 GWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGF 519
Query: 478 AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537
Q G +EA + F +M ++G+ PN VT +G+L+AC H GL+EE M++EYG+ P
Sbjct: 520 GQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETMKSEYGLEPY 579
Query: 538 REHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579
EH CVVDLL +AG EA + IN+M + D +W SLL +
Sbjct: 580 LEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTA 621
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| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 178/555 (32%), Positives = 287/555 (51%)
Query: 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKM 96
T+ + AC + S++ G H L++ +V + N ++ MY +C SL DAR FD+M
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
Query: 97 PQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQS-GVMPGQFTFGSIIKACSGLGSVCLG 155
+VVSW ++I ++ + A++++ +M G P T +++ C+ LG+ LG
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLG 248
Query: 156 RQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKL 215
+QLH + SE ++ N L+ MY K + +A VFS ++ KDV SW +M+A +S++
Sbjct: 249 KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308
Query: 216 GYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVA 275
G +A+ F +M E I D+ +W+A I+G A
Sbjct: 309 GRFEDAVRLFEKM-------QEEKI--------------------KMDVVTWSAAISGYA 341
Query: 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD---- 331
EA+ + +M + P+ +T+ S+L C L G ++H Y IK D
Sbjct: 342 QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401
Query: 332 ----SNVPVCNAILTMYAKCSVLCNALLVFKELG-KNADSVSWNSIIAACLQHNQAEELF 386
N+ V N ++ MYAKC + A +F L K D V+W +I QH A +
Sbjct: 402 GHGDENM-VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460
Query: 387 RLFSRMLAS--QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGL-AFDVFVMNGLM 443
L S M Q +P+ T + + ACA +A+L + Q+H Y + A +FV N L+
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLI 520
Query: 444 DIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503
D+Y KCGS+ AR +F+ M + V+W+SL+ GY G G+EAL +F MR +G + V
Sbjct: 521 DMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 580
Query: 504 TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563
TL+ VL ACSH G++++G+ + M+ +G+ P EH +C+VDLL RAG ++ A I +
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640
Query: 564 MACDADIVVWKSLLA 578
M + VVW + L+
Sbjct: 641 MPMEPPPVVWVAFLS 655
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| TAIR|locus:2164880 EMB2744 "EMBRYO DEFECTIVE 2744" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 110/337 (32%), Positives = 189/337 (56%)
Query: 244 VFSACS-NFARI-LFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLT 301
++S CS N I + +++ DL+ +++ ++G E + + + + + + + LT
Sbjct: 180 MYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLT 239
Query: 302 VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG 361
S L L +QVHS +++ GF++ V C A++ MY KC + A VF +
Sbjct: 240 YLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDT- 298
Query: 362 KNADSVSWNS-IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMV 420
+A ++ N+ I+ A Q EE LFS+M ++ P+ TF ++ + A+++ L+
Sbjct: 299 -HAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQG 357
Query: 421 TQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480
LH + K+G V V N L+++Y K GS+ ARK F+ M D+V+W+++I G +
Sbjct: 358 DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHH 417
Query: 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540
G G EAL+ F RM G PN +T +GVL ACSH+G VE+GLH + + ++ + P +H
Sbjct: 418 GLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQH 477
Query: 541 CSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLL 577
+C+V LL++AG +AEDF+ + D+V W++LL
Sbjct: 478 YTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLL 514
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFI1 | PP280_ARATH | No assigned EC number | 0.5478 | 0.9965 | 0.7513 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00023152001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (641 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 579 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-118 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-56 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 369 bits (948), Expect = e-118
Identities = 204/620 (32%), Positives = 320/620 (51%), Gaps = 51/620 (8%)
Query: 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDH 60
SN + +LC +AL + Q + + Y L C R+++ G +V
Sbjct: 53 DSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSR 111
Query: 61 ILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDA 120
L S V L N +L+M+ + G L A F KMP+R++ SW ++ G ++ ++A
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAM 180
+ LY +ML +GV P +TF +++ C G+ + GR++HAHV++ + NALI M
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 181 YTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240
Y K ++ AR VF + R+D SW +MI+ + + G LE L F M + P+
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMT 290
Query: 241 FGSVFSACSNF----------------------------------------ARILFNEID 260
SV SAC A +F+ ++
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL--CACIGRLTLYQG 318
+ D SW A+I+G + ++A+ ++ M + PD +T+ S+L CAC+G L + G
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV--G 408
Query: 319 MQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAA-CL 377
+++H + G S V V NA++ MY+KC + AL VF + D +SW SIIA L
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDVISWTSIIAGLRL 467
Query: 378 QHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVF 437
+ E L F +ML + +KP+ +T + ACA++ +L ++H ++ +TG+ FD F
Sbjct: 468 NNRCFEALI-FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 438 VMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG 497
+ N L+D+Y++CG + A FN E DVVSW+ L+ GY G G A++LF RM G
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 498 VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEA 557
V+P+ VT + +L ACS G+V +GL + ME +Y I P +H +CVVDLL RAG + EA
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 558 EDFINQMACDADIVVWKSLL 577
+FIN+M D VW +LL
Sbjct: 645 YNFINKMPITPDPAVWGALL 664
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 2e-60
Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 1/326 (0%)
Query: 252 ARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311
AR LF+E+ +LASW +I G+ N EA +LF EM + + T +L A G
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNS 371
+ G Q+H ++K G + V A++ MY+KC + +A VF + + +V+WNS
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNS 295
Query: 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431
++A H +EE L+ M S + D TF+ ++ +++A LE Q H + +TG
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 432 LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFT 491
D+ L+D+Y K G + AR +F+ M +++SW++LI GY G G +A+++F
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551
RM + GV+PN VT + VL+AC + GL E+G +++ M + I P H +C+++LL R
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 552 GCVHEAEDFINQMACDADIVVWKSLL 577
G + EA I + + +W +LL
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALL 501
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-56
Identities = 108/338 (31%), Positives = 189/338 (55%), Gaps = 8/338 (2%)
Query: 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL 300
FG + A F ++ DL SWN L+ G A +EA+ L+ M + PD
Sbjct: 134 FGELVHAWYVFGKM-----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 301 TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360
T +L C G L +G +VH+++++ GF+ +V V NA++TMY KC + +A LVF +
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMV 420
+ D +SWN++I+ ++ + E LF M + PD +T V+ AC + +
Sbjct: 249 PRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 421 TQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480
++H Y+ KTG A DV V N L+ +Y+ GS G A K+F+ ME D VSW+++I GY +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540
G D+AL+ + M VSP+ +T+ VL+AC+ +G ++ G+ L+ + E + G+I
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVV 426
Query: 541 CSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLA 578
+ ++++ ++ C+ +A + + + + D++ W S++A
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIA 463
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-51
Identities = 108/350 (30%), Positives = 163/350 (46%), Gaps = 48/350 (13%)
Query: 7 SSLCKQ-------NLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHD 59
SLC Q + EAL ++ + + STY L+ AC +L+S++ + V+
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 60 HILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQEND 119
H+ S +PD + N +L M+ KCG L DAR FD+MP+RN+ SW +I G +
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 120 AIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIA 179
A L+ +M + G TF +++A +GLGS G+QLH V+K+ ALI
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 180 MYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF 239
MY+K I DAR VF G+ K +W SM+A ++ GY EALC + EM G ++F
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQF 326
Query: 240 IFGSVFSACSNF----------------------------------------ARILFNEI 259
F + S AR +F+ +
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 260 DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCAC 309
+L SWNALIAG +H +A+ +F M + P+ +T ++L AC
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-41
Identities = 75/215 (34%), Positives = 124/215 (57%), Gaps = 1/215 (0%)
Query: 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFD 94
P T+ ++ A + L S + G+++H +L + D + +++MY KCG +EDAR FD
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 95 KMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCL 154
MP++ V+W +M+AG + + +A+ LY +M SGV QFTF +I+ S L +
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343
Query: 155 GRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSK 214
+Q HA +I++ ++A AL+ +Y+K+ R+ DARNVF + RK++ SW ++IA +
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 215 LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACS 249
G +A+ F M+ G PN F +V SAC
Sbjct: 404 HGRGTKAVEMFERMIAEGV-APNHVTFLAVLSACR 437
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 6e-35
Identities = 91/329 (27%), Positives = 152/329 (46%), Gaps = 29/329 (8%)
Query: 265 ASWNALIAGVASHSNAN---EAMSLFSEMRDR-ELLPDGLTVHSLLCACIGRLTLYQGMQ 320
S +L + + EA+ LF + T +L+ ACI ++
Sbjct: 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144
Query: 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHN 380
V+ ++ GF+ + + N +L M+ KC +L +A +F E+ + + SW +II +
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAG 203
Query: 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440
E F LF M + TF ++ A A + S QLHC + KTG+ D FV
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500
L+D+Y KCG + AR +F+ M V+W+S++ GYA G +EAL L+ MR GVS
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 501 NLVTLVGVLTACS-----------HVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549
+ T ++ S H GL+ G L I+ N + +VDL +
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVAN-----------TALVDLYS 371
Query: 550 RAGCVHEAEDFINQMACDADIVVWKSLLA 578
+ G + +A + ++M +++ W +L+A
Sbjct: 372 KWGRMEDARNVFDRMP-RKNLISWNALIA 399
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 47/313 (15%)
Query: 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKM 96
T A ++SAC+ L L +G K+H+ VV+ N ++ MY KC ++ A F +
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 97 PQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGR 156
P+++V+SWT++IAG N + +A+ + QML + + P T + + AC+ +G++ G+
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509
Query: 157 QLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLG 216
++HAHV+++ G NAL+ +Y + R+ A N F+ KDV SW ++ + G
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHG 568
Query: 217 YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI-----LFNEID----------- 260
A+ FN M+ G P+E F S+ ACS + F+ ++
Sbjct: 569 KGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 261 --------------------------SPDLASWNALIAGVASHSNANEAMSLFSEMRDRE 294
+PD A W AL+ H + + + E
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE--LGELAAQHIFE 685
Query: 295 LLPDGLTVHSLLC 307
L P+ + + LLC
Sbjct: 686 LDPNSVGYYILLC 698
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 4e-18
Identities = 43/135 (31%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 17 EALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHI 76
EAL Y + ++ + I T++ +I S L L+ ++ H ++ + D+V +
Sbjct: 308 EALCLY-YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 77 LNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ 136
+++Y K G +EDAR FD+MP++N++SW A+IAG + + A++++ +M+ GV P
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 137 FTFGSIIKAC--SGL 149
TF +++ AC SGL
Sbjct: 427 VTFLAVLSACRYSGL 441
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 10/210 (4%)
Query: 373 IAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGL 432
+ AC +H +A ELF + T++ ++ AC + S+ V ++ ++ +G
Sbjct: 97 LVACGRHREALELFEILE--AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154
Query: 433 AFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTR 492
D ++MN ++ +++KCG L AR+LF+ M ++ SW ++I G G EA LF
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 493 MRSLGVSPNLVTLVGVLTACSHVGLVEEG--LHLYRIMENEYGIIPTREHCSC-VVDLLA 549
M G T V +L A + +G G LH + G SC ++D+ +
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYS 270
Query: 550 RAGCVHEAEDFINQMACDADIVVWKSLLAS 579
+ G + +A + M + V W S+LA
Sbjct: 271 KCGDIEDARCVFDGMP-EKTTVAWNSMLAG 299
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 74/325 (22%), Positives = 145/325 (44%), Gaps = 39/325 (12%)
Query: 207 SMIAAFSKLGYELEALCH-FNEMLHHGAYQPNEFIFGSVFSACSNFAR---------ILF 256
++I+ +K G +++A+ F+EM++ G + N FG++ C+ + I+
Sbjct: 477 TLISTCAKSG-KVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 257 NEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR--DRELLPDGLTVHSLLCACI---- 310
++ PD +NALI+ + A + +EM+ + PD +TV +L+ AC
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 311 -GR-LTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCN---ALLVFKELGKNA- 364
R +YQ + H Y IK G P I CS + AL ++ ++ K
Sbjct: 595 VDRAKEVYQMI--HEYNIK-GT----PEVYTIAV--NSCSQKGDWDFALSIYDDMKKKGV 645
Query: 365 --DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQ 422
D V +++++ ++ F + IK ++++ +MGAC+ + + +
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 423 LHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----PDVVSWSSLILGYA 478
L+ I L V MN L+ + L A ++ + M+ P+ +++S L++
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 479 QFGCGDEALKLFTRMRSLGVSPNLV 503
+ D L L ++ + G+ PNLV
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 82/399 (20%), Positives = 163/399 (40%), Gaps = 54/399 (13%)
Query: 36 STYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDK 95
ST+ L+S C+S + + +V + + + D L +++ K G ++ F +
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 96 MP----QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGS 151
M + NV ++ A+I GC++ Q A Y M V P + F ++I AC G+
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 152 VCLGRQL--------HAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVT 203
V R H I +H I AL+ ++ A+ V+ I ++
Sbjct: 558 V--DRAFDVLAEMKAETHPIDPDH----ITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 204 S----WGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEI 259
+ + + S+ G AL +++M G +P+E F
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFF------------------ 652
Query: 260 DSPDLASWNALIAGVASHS-NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQG 318
+AL+ VA H+ + ++A + + R + + ++ SL+ AC +
Sbjct: 653 --------SALV-DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 319 MQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVF---KELGKNADSVSWNSIIAA 375
++++ I + V NA++T + + L AL V K LG ++++++ ++ A
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
Query: 376 CLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414
+ + A+ L S+ IKP+ + + G C +
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK 413
D V++N++I + + EE +LF+ M IKP+ T++ ++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVT 504
PDVV++++LI GY + G +EALKLF M+ G+ PN+ T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 50/253 (19%), Positives = 107/253 (42%), Gaps = 29/253 (11%)
Query: 348 SVLCNA---------LLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK 398
SV ++ L + +E G AD + ++I+ C + + + +F +F M+ + ++
Sbjct: 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504
Query: 399 PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458
+ TF ++ CA+ + + + + D V N L+ CG G+ +
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS---ACGQSGAVDRA 561
Query: 459 FNFME---------NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV--SPNLVTLVG 507
F+ + +PD ++ +L+ A G D A +++ + + +P + T+
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI-- 619
Query: 508 VLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACD 567
+ +CS G + L +Y M + G+ P S +VD+ AG + +A + +
Sbjct: 620 AVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 568 A---DIVVWKSLL 577
V + SL+
Sbjct: 679 GIKLGTVSYSSLM 691
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 9e-08
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 100 NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC 146
+VV++ +I G + + +A+KL+ +M + G+ P +T+ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCAC 309
PD+ ++N LI G EA+ LF+EM+ R + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN----PDVVSWSSLILGYAQ 479
DV N L+D Y K G + A KLFN M+ P+V ++S LI G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGV 498
V+++SLI GY + G +EAL+LF M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 68 PDVVLQNHILNMYGKCGSLEDARMGFDKMPQR----NVVSWTAMIAGCSQ 113
PDVV N +++ Y K G +E+A F++M +R NV +++ +I G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 40/189 (21%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 357 FKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416
F +L +N ++N +++ C + R+ + + +K D + ++ CAK
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----PDVVSWSS 472
++ + ++ + G+ +V L+D + G + A + M + PD V +++
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 473 LILGYAQFGCGDEALKLFTRMRSLG--VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530
LI Q G D A + M++ + P+ +T+ ++ AC++ G V+ +Y+++
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH- 606
Query: 531 EYGIIPTRE 539
EY I T E
Sbjct: 607 EYNIKGTPE 615
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501
V++++LI G + G +EAL+LF M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400
V++N++I + + EE LF M I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKP 399
++N+++ A + + + M AS +KP
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494
PDVV++++LI G + G DEA++L M
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.42 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.37 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.22 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.04 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.33 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.23 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.18 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.06 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.01 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.51 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.51 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.37 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.66 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.46 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.15 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.59 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.25 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.55 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.1 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.15 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.52 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.42 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.34 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 90.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.17 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.92 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.36 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.85 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.31 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.14 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.94 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.19 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.15 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.71 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.39 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.29 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.53 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.42 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.26 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.02 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.89 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.88 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.96 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 83.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 83.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.39 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.04 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.88 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.18 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.09 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-86 Score=688.13 Aligned_cols=574 Identities=35% Similarity=0.621 Sum_probs=560.6
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.+|.+++.|++.|++++|+.+|+.|.+. |.+|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...++.++..|
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3789999999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.||..+++.|+.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+ .||..|
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~~t 290 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-DPDLMT 290 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHH----------------------------------------HHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 241 FGSVFSACSNF----------------------------------------ARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 241 ~~~~l~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
|+.++.+|... +.++|+++..||..+||.+|.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH
Confidence 99999887643 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++++|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
..+ |..+|+.++.+|++.|+.++|..+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++
T Consensus 451 ~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 451 PEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 875 999999999999999999999999999986 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
+|+++|+++|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhHhhhhhcC
Q 043608 521 GLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579 (579)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 579 (579)
|.++|+.|.+.+|+.|+..+|..++++|.+.|++++|.+++++|+.+||..+|++||+|
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999977799999999999999999999999999999999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-76 Score=616.07 Aligned_cols=531 Identities=28% Similarity=0.464 Sum_probs=511.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
+||++|++|++.|++++|+++|++|... |+.||..||+.++.+|+..+++..+.+++..+.+.|+.|+..+++.++.+|
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 5999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+.|+ .||..|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t 391 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEIT 391 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHH----------------------------------------HHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 241 FGSVFSACSNF----------------------------------------ARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 241 ~~~~l~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+..++.+|++. |..+|+++.++|..+|+.+|.+|++.|+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCH
Confidence 99999887533 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|+++|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 6999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT-KTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 439 (579)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCc
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFME-NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGL 517 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 517 (579)
++++++|++.|++++|.+++++|. +||..+|++|+.+|...|+.+.+....+++.+. .|+ ...|..+.+.|+..|+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCC
Confidence 999999999999999999999996 899999999999999999999999999998874 554 5678888899999999
Q ss_pred hHHHHHHHHHHHHhhCCCCCcc
Q 043608 518 VEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
+++|.++.+.|++. |+.+++-
T Consensus 707 ~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 707 WDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHHc-CCCCCCC
Confidence 99999999999988 8888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-72 Score=574.33 Aligned_cols=528 Identities=14% Similarity=0.171 Sum_probs=406.6
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|..++..+++.|++++|+++|+.|.+.+-.+++..++..++..|.+.|.+++|..+++.|.. |+..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 55667777777777777777777777633456666777777777777777777777777752 77777777777777
Q ss_pred ccCChhhHHHhhcCCC----CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHH
Q 043608 82 KCGSLEDARMGFDKMP----QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQ 157 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 157 (579)
+.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 7777777777777776 367777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC------CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 158 LHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA------RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777774 357777777777777777777777777777777
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc
Q 043608 232 GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311 (579)
Q Consensus 232 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (579)
|+ .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 609 gi---------------------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 609 NI---------------------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred CC---------------------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 77 777788888888888888888888888888888888888888888888888
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++| +..||..+||.+|.+|++.|++++|.++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888776 4567888888888888888888888888
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 043608 389 FSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV 468 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 468 (579)
|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++..|.+ ++++|..+.+.+...+.
T Consensus 742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~- 818 (1060)
T PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS- 818 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc-
Confidence 888888888888888888888888888888888888888888888888888887765432 34444444332221110
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.......+..+.|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|... +..|+..+|+.|++++
T Consensus 819 -----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 -----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred -----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhh
Confidence 0011112234679999999999999999999999998888999999999999988766 8888999999999998
Q ss_pred HhcCChhHHHHHHHhh---cCCCChh
Q 043608 549 ARAGCVHEAEDFINQM---ACDADIV 571 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~---~~~~~~~ 571 (579)
.+. .++|..++++| +..|+..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 432 36899999999 6777765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-69 Score=550.39 Aligned_cols=510 Identities=14% Similarity=0.166 Sum_probs=415.7
Q ss_pred CCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCC-CCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHh
Q 043608 30 NIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKC-QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMI 108 (579)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 108 (579)
+..++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.++
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777888999999999999999999999999884 567778888999999999999999999999999999999999
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 188 (579)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHhcccCC----CcHhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC
Q 043608 189 DARNVFSGIAR----KDVTSWGSMIAAFSKLGYELEALCHFNEMLH--HGAYQPNEFIFGSVFSACSNFARILFNEIDSP 262 (579)
Q Consensus 189 ~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (579)
+|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+ .|
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi---------------------------~P 577 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI---------------------------DP 577 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC---------------------------CC
Confidence 88888877753 5777888888888888888888888888865 455 77
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILT 342 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (579)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888788888888
Q ss_pred HHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH
Q 043608 343 MYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 419 (579)
+|++.|++++|.++|++| +..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888887777776 55677777888888888888888888888887777777787788888888888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|. .||..+|++++..|. +++++|.++.+.+..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh
Confidence 88888877777777777777777777777777777777777776 377777777775443 235555554443332
Q ss_pred CCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh---cCCCChhH
Q 043608 496 LGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM---ACDADIVV 572 (579)
Q Consensus 496 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 572 (579)
-+ + .......+..+.|..+|++|.+. |+.||..+|..++.++.+.+..+.+..+++.| +..|+..+
T Consensus 816 f~--~--------g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 816 FD--S--------GRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred hh--c--------cccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 11 0 00111223346799999999998 99999999999999999999999999999999 45677899
Q ss_pred hhhhhcC
Q 043608 573 WKSLLAS 579 (579)
Q Consensus 573 ~~~l~~~ 579 (579)
|++||.|
T Consensus 885 y~~Li~g 891 (1060)
T PLN03218 885 LSTLVDG 891 (1060)
T ss_pred hHHHHHh
Confidence 9999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=547.42 Aligned_cols=471 Identities=27% Similarity=0.428 Sum_probs=422.8
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+++|..|.+.|++++|+++|++|....+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 38999999999999999999999998875678999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|++++|.++|++|++||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.+++.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.++|+.+||+++.+|++.|++++|+++|++|.+.|+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~------- 321 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV------- 321 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999998888888888777777777777777766666666666666665555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHH
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 320 (579)
.||..+|+.++ .+|++.|+++.|.+
T Consensus 322 --------------------~pd~~t~~~ll-----------------------------------~a~~~~g~~~~a~~ 346 (697)
T PLN03081 322 --------------------SIDQFTFSIMI-----------------------------------RIFSRLALLEHAKQ 346 (697)
T ss_pred --------------------CCCHHHHHHHH-----------------------------------HHHHhccchHHHHH
Confidence 44444455444 44555555555555
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
++..|.+.|+.|+..+++.++++|++.|++++|.++|++|.. ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 555555556667778888899999999999999999999976 4999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHH
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITK-TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME-NPDVVSWSSLILGYA 478 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~ 478 (579)
..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++. +|+..+|++++.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999985 6999999999999999999999999999999997 699999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
..|+++.|..+++++.+. .|+ ..+|..+++.|++.|++++|.++++.|.+. |+.+.
T Consensus 506 ~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 999999999999999764 564 679999999999999999999999999988 77543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=508.58 Aligned_cols=419 Identities=29% Similarity=0.507 Sum_probs=378.4
Q ss_pred CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCC-CCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHH
Q 043608 98 QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSG-VMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNA 176 (579)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (579)
.++..+|+.++.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHh
Q 043608 177 LIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILF 256 (579)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 256 (579)
++.+|++.|+++.|.++|++|+++|..+|+.++.+|++.|++++|+++|++|.+.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----------------------- 220 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS----------------------- 220 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----------------------
Confidence 999999999999999999888877777777777777777766666666666665555
Q ss_pred hcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh
Q 043608 257 NEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 257 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
.|+..||..++.+|++.|..+.+.+++..+.+.|+.++..+
T Consensus 221 ---------------------------------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 221 ---------------------------------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ---------------------------------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 44555555555555555555555555555666667777888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
++.++.+|++.|++++|.++|++|..+ |..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 888999999999999999999999765 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+++|.+++..|.+.|+.||..+++.|+++|+++|++++|.++|++|.+||..+||+|+.+|++.|+.++|.++|++|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhHhhhh
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSL 576 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 576 (579)
|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|++|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~L 500 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred hcC
Q 043608 577 LAS 579 (579)
Q Consensus 577 ~~~ 579 (579)
++|
T Consensus 501 l~a 503 (697)
T PLN03081 501 LTA 503 (697)
T ss_pred HHH
Confidence 864
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=301.14 Aligned_cols=546 Identities=13% Similarity=0.051 Sum_probs=441.4
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+...+.+.|++++|+..++.+... .+.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+..
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 45667888999999999999998874 45567788888999999999999999999998765 5567788888889999
Q ss_pred cCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
.|++++|.+.++.+.+ | +...+..++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988764 2 3345667778899999999999999999875 3556778899999999999999999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
+++.+.. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|..+++++...+ ..
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc
Confidence 9998764 34566777888999999999999999988754 366788889999999999999999999998764 23
Q ss_pred ChHhHHHHHHHHHHH-----HHHHhhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 043608 237 NEFIFGSVFSACSNF-----ARILFNEI---DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCA 308 (579)
Q Consensus 237 ~~~~~~~~l~~~~~~-----~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (579)
+...+..+...+... +...++.+ .+.+...|..+..++...|++++|...|+.+.+.. +.+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 333333333333322 33444433 24567788889999999999999999999887653 3355667778888
Q ss_pred hhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG--KNADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|.++++.+. .+++...+..+...+...|++++|.
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 888999999999999888765 4457788888899999999999999998872 2345667888888889999999999
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-- 464 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 464 (579)
..|+++...+ |+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 9999988864 555777788888999999999999999888764 34678888888999999999999999998863
Q ss_pred -CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 465 -PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 465 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
++...++.+...+...|+ ++|+.+++++.+.. +-+..++..+...+...|++++|..+++++.+. + +.+..++..
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~-~~~~~~~~~ 876 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-A-PEAAAIRYH 876 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCChHHHHH
Confidence 456778888899999998 88999999988752 234557778888889999999999999999874 3 337788888
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+|.+.|+.++|.+++++|
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999887
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=294.53 Aligned_cols=555 Identities=13% Similarity=0.007 Sum_probs=459.9
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
-..+...|++++|...|+.+... .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 44677899999999999999875 45566677888888999999999999999998776 6678889999999999999
Q ss_pred hhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|+++.+ .+...+..+...+...|++++|.+.++.+.+.+ +........++..+...|++++|.++++.+
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998764 345567788888999999999999999998764 223455667788899999999999999998
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF 239 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 239 (579)
.... +.+..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.+ +.+..
T Consensus 458 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 534 (899)
T TIGR02917 458 EKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLR 534 (899)
T ss_pred HHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHH
Confidence 8753 45678899999999999999999999998754 356678888999999999999999999998874 23344
Q ss_pred hHHHHHHHHHHH-----HHHHhhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc
Q 043608 240 IFGSVFSACSNF-----ARILFNEI---DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311 (579)
Q Consensus 240 ~~~~~l~~~~~~-----~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (579)
.+..+...+... +...+++. .+.+...+..++..+.+.|++++|..+++.+... .+.+...+..+...+..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 444443333222 44444443 3456677888999999999999999999999865 35567788899999999
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQAEELFRLF 389 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 389 (579)
.|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++ .. +.+..++..+...+...|++++|.+++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998875 446677888999999999999999999987 22 335778999999999999999999999
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CC
Q 043608 390 SRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PD 466 (579)
Q Consensus 390 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 466 (579)
+.+.+.+ +++...+..+...+...|++++|...++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+ .+
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9998875 5567788888899999999999999999998765 4446777899999999999999999998863 56
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
...+..+...|...|++++|.++|+++.+.+ +++...+..+...+...|+ ++|+.+++++... .+-++.++..+..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~ 845 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 7788889999999999999999999999874 4567889999999999999 8899999999864 2334557778899
Q ss_pred HHHhcCChhHHHHHHHhh-cCCC-ChhHhhhh
Q 043608 547 LLARAGCVHEAEDFINQM-ACDA-DIVVWKSL 576 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 576 (579)
++...|++++|.++++++ ...| +..++..+
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999999999999999 3333 55555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-24 Score=229.29 Aligned_cols=541 Identities=11% Similarity=-0.003 Sum_probs=332.2
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHH-HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLIS-ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
+.+.+.|++++|++.|+.+... .+++...-..... .....|+.++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 4678899999999999999873 4444321111112 2234589999999999999886 6677888899999999999
Q ss_pred hhhHHHhhcCCCCCCe------ee-----------------hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHH
Q 043608 86 LEDARMGFDKMPQRNV------VS-----------------WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSI 142 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~------~~-----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 142 (579)
.++|+..++++.+... .. +...+..+-.....+.|...+.+.......|+.. ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHH
Confidence 9999999988743110 00 1111111111111223333333332221111110 0112
Q ss_pred HHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH-----hhHH-----------
Q 043608 143 IKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV-----TSWG----------- 206 (579)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~----------- 206 (579)
...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..|++..+.+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 233444555555555555555443 22344455555555555555555555554432110 0110
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHH-----HHHHhhcCC---CCChhhHHHHHHHHHc
Q 043608 207 -SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNF-----ARILFNEID---SPDLASWNALIAGVAS 276 (579)
Q Consensus 207 -~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~li~~~~~ 276 (579)
.....+.+.|++++|.+.|++..+.. |+.. .+..+-..+... +...+++.. +.+...+..+...+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD---NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 11223445555555555555555442 2111 111111111000 222222221 334445555555554
Q ss_pred CCChHHHHHHHHHHHhCCCC--------CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 277 HSNANEAMSLFSEMRDRELL--------PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
.++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+... .++.++..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 35677777777655432100 0012234455566778999999999999888753 35667778888899999
Q ss_pred ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh---------HHHHHHHHHhccCCh
Q 043608 349 VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI---------TFNDVMGACAKMASL 417 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~ 417 (579)
++++|...++++ ...| +...+..+...+...++.++|...++.+......++.. .+......+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999886 2223 44444444555667888999998888764332222221 123445677888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
++|..+++. .+.++..+..+...+.+.|+.++|...|+++.+ | +...+..++..|...|++++|++.++...
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999998872 345666778889999999999999999998874 3 56788889999999999999999999887
Q ss_pred hCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC----CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 495 SLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP----TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 495 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+. .|+ ...+..+..++...|++++|.++++++.....-.| +...+..+.+.+...|+.++|.+.+++.
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 64 444 45677788888999999999999999986411111 1235666788899999999999999887
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=218.92 Aligned_cols=519 Identities=13% Similarity=0.031 Sum_probs=324.9
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHH------------
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQ------------ 73 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 73 (579)
++.+...++.+.|.+.++++... .+.++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCc
Confidence 45566778889999999988874 45566777888888888999999999999988776 3343332
Q ss_pred ----HHHHHHHHccCChhhHHHhhcCCCCCCeeehh----HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 043608 74 ----NHILNMYGKCGSLEDARMGFDKMPQRNVVSWT----AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKA 145 (579)
Q Consensus 74 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 145 (579)
..+...+.+.|++++|++.|+...+.++.... .........|++++|++.|+++.+.. +-+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 23344677889999999988887743222111 11111224588899999999988863 3345567777778
Q ss_pred hcCCCcchhHHHHHHHHHHhccCC----------------C---hhHHH-------------------------------
Q 043608 146 CSGLGSVCLGRQLHAHVIKSEHGS----------------H---LIAQN------------------------------- 175 (579)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~----------------~---~~~~~------------------------------- 175 (579)
+...|+.++|++.++++.+..... + ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 888899998988888875432100 0 00011
Q ss_pred ---HHHHHHhcCCCHHHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 043608 176 ---ALIAMYTKFDRILDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACS 249 (579)
Q Consensus 176 ---~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~ 249 (579)
.....+...|++++|+..|++..+ | +...+..+...+.+.|++++|...|++..+... +
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p---~------------ 335 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP---H------------ 335 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C------------
Confidence 112233444555555555554432 1 344555555555555555555555555544321 0
Q ss_pred HHHHHHhhcCCCCChhhHH------------HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh
Q 043608 250 NFARILFNEIDSPDLASWN------------ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 317 (579)
.++...|. .....+.+.|++++|...|++..... +.+...+..+...+...|++++
T Consensus 336 -----------~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 336 -----------SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred -----------ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 11111121 12345677888888888888888752 2344556667778888888888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-C----------ChhhHHHHHHHHHhcCCHHHHH
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-A----------DSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
|.+.|+.+.+... .+...+..+...+. .++.++|...++.+... + ....+..+...+...|++++|.
T Consensus 404 A~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 404 AERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 9888888887642 23444444444442 23455555555443211 0 0112333444455566666666
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH--------------------------
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN-------------------------- 440 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------- 440 (579)
+.|++..+.. +-+...+..+...+...|++++|...++++.+.... ++..+.
T Consensus 482 ~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 482 ELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 6666665542 223444555556666666666666666665543221 122111
Q ss_pred ------------------HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh
Q 043608 441 ------------------GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502 (579)
Q Consensus 441 ------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 502 (579)
.+...+...|+.++|..+++.- .++...+..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 2234455566666666666622 2344556678888899999999999999999863 3356
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..++..+...|++++|...++...+ ..| +......+..++...|++++|.++++++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7888999999999999999999998774 344 3456677888899999999999999998
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=208.81 Aligned_cols=541 Identities=11% Similarity=-0.023 Sum_probs=378.9
Q ss_pred hcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 11 KQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
..|++++|+..|+.+.+. .|-+..++..+...+...|++++|...+++..+.. +.|...+..+ ..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 349999999999999985 45557788899999999999999999999999875 4444444444 222 8999999
Q ss_pred HhhcCCCC--CC-eeehhHHhhhh-----hcCCChhhHHHHHHHHHHCCCCCCcccHHHH-HHHhcCCCcchhHHHHHHH
Q 043608 91 MGFDKMPQ--RN-VVSWTAMIAGC-----SQNYQENDAIKLYIQMLQSGVMPGQFTFGSI-IKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 91 ~~~~~~~~--~~-~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~ 161 (579)
.+++++.+ |+ ...+..+.... ....++++|.+.++ .......|+..+.... .+.|...|+++.|+.++.+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999974 43 44455444440 11233466666666 4333233344444444 8899999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHhc-CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 162 VIKSEHGSHLIAQNALIAMYTK-FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..++..+.+.|+.++|.++++++...-.-.|+..+
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 999874 345556667677887 477 88888877655668889999999999999999999999998776543466666
Q ss_pred HHHHHHHHHHH-----------------------------------HHHHhhcCC-------------------------
Q 043608 241 FGSVFSACSNF-----------------------------------ARILFNEID------------------------- 260 (579)
Q Consensus 241 ~~~~l~~~~~~-----------------------------------~~~~~~~~~------------------------- 260 (579)
+...+...... +..+ ....
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 55554432211 1111 1111
Q ss_pred --------CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC-C-CCCChHHHHHHHHHhhcccch---hhHHH-------
Q 043608 261 --------SPDLASWNALIAGVASHSNANEAMSLFSEMRDR-E-LLPDGLTVHSLLCACIGRLTL---YQGMQ------- 320 (579)
Q Consensus 261 --------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~---~~a~~------- 320 (579)
+.+......+.-...+.|+.++|.++|+..... + -.++......++..+.+.+.. ..+..
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 112222222333445677888888888877652 1 222333444666666655442 22211
Q ss_pred ---------------HHHHHHHc-CC-CC--CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcC
Q 043608 321 ---------------VHSYIIKM-GF-DS--NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHN 380 (579)
Q Consensus 321 ---------------~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 380 (579)
.++..... +. ++ +...+..+..++.. ++.++|...+.+. ...|+......+...+...|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC
Confidence 12222111 11 23 55677777777776 7888898866654 44566444334445556899
Q ss_pred CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
++++|...|+++... +|+...+..+...+...|+.++|...++...+... .+...+..+.......|++++|...++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999997664 45555566677788899999999999999887652 233333344444556699999999999
Q ss_pred hCC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 461 FME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 461 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
+.. .|+...|..+...+.+.|++++|+..+++..+. .| +...+..+..++...|++++|+..+++..+. .+-+
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~ 676 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDD 676 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 888 488888999999999999999999999999986 45 4567788888999999999999999999863 2335
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCCh
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQM-ACDADI 570 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 570 (579)
...+..+..++...|++++|...+++. ...|+.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 667889999999999999999999988 455653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-19 Score=183.56 Aligned_cols=544 Identities=8% Similarity=-0.071 Sum_probs=378.3
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH--
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM-- 79 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 79 (579)
+..+.+.|.+.|+.++|+..+++.... .|+...|..++..+ +++++|..+++++.+.. +.+...+..+...
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~ 153 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhh
Confidence 356788999999999999999999874 33334444333333 88999999999999887 6667777777666
Q ss_pred ------HHccCChhhHHHhhcCCCCCC--eeehhHH-hhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC-C
Q 043608 80 ------YGKCGSLEDARMGFDKMPQRN--VVSWTAM-IAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG-L 149 (579)
Q Consensus 80 ------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~ 149 (579)
|.+.++..++++ .+...|+ ....... .+.|.+.|+|++|+++++++.+.+ +.+..-...+-.+|.. .
T Consensus 154 ~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred ccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 777766666666 3333343 4444444 889999999999999999999985 3334445566667766 3
Q ss_pred CcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-----cHh---------------------
Q 043608 150 GSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-----DVT--------------------- 203 (579)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--------------------- 203 (579)
++ +.+..+++. .+..+..+...+...|...|+.++|.++++++..- ...
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 66 777777442 34468888999999999999999999999887531 000
Q ss_pred ---------hHHHHHHHHHhcCChHHHHHH-----------------------------HHHHHhcCCCCC---ChHhHH
Q 043608 204 ---------SWGSMIAAFSKLGYELEALCH-----------------------------FNEMLHHGAYQP---NEFIFG 242 (579)
Q Consensus 204 ---------~~~~l~~~~~~~~~~~~a~~~-----------------------------~~~m~~~~~~~p---~~~~~~ 242 (579)
..-.++..+.+.+.++.+.++ ++.|.+...-.+ +..++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 011124444555555444433 222322200011 223444
Q ss_pred HHHHHHHHHHHHHhhcCCC------CChhhHHHHHHHHHcCCC---hHHHHHH----------------------HHHHH
Q 043608 243 SVFSACSNFARILFNEIDS------PDLASWNALIAGVASHSN---ANEAMSL----------------------FSEMR 291 (579)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~---~~~a~~~----------------------~~~m~ 291 (579)
.+-+.-.+.+.++++...+ .+...-+-++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4444444556666666543 122234466677776655 3333333 11111
Q ss_pred hC-CCCC---ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCCh
Q 043608 292 DR-ELLP---DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNADS 366 (579)
Q Consensus 292 ~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~ 366 (579)
.. +..| +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+.+ ..+|+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 1223 34455555555555 78888999888877664 45444444455567899999999999987 334555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++..+.. |+...+..+..++
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l 619 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIY 619 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 567777888899999999999999998864 2233333334445556799999999999998765 4678899999999
Q ss_pred HHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHH
Q 043608 447 IKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
.+.|+.++|...+++... | +...++.+...+...|++++|+..+++..+. .| +...+..+..++...|++++|+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999874 4 4567778888999999999999999999985 45 5668889999999999999999
Q ss_pred HHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhHHHHHHHhh-cCCCChh
Q 043608 523 HLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHEAEDFINQM-ACDADIV 571 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 571 (579)
..+++..+. .|+. .+.........+..+++.|.+-+++- .+.|+..
T Consensus 698 ~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 698 HYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999853 5654 56667788888888899999987776 5555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=164.40 Aligned_cols=461 Identities=13% Similarity=0.079 Sum_probs=296.4
Q ss_pred hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCe---eehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 53 LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNV---VSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.+-.++.+..... ........+.+..-+.|++.+|++.-..+-+.|. ...-.+-..+.+..+.+....--....+
T Consensus 33 ~s~~v~qq~~~t~--~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r 110 (966)
T KOG4626|consen 33 GSSSVLQQFNKTH--EGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR 110 (966)
T ss_pred cchHHHHHhccCC--ccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh
Confidence 3444455444332 1223355667777788999999887766654222 2222223345555666655444333333
Q ss_pred CCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHh---hHH
Q 043608 130 SGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVT---SWG 206 (579)
Q Consensus 130 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~ 206 (579)
. .+.-..+|..+.+.+-..|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+-|+. ..+
T Consensus 111 ~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 111 K-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred c-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 2 23346788888888888888888888888888764 234667777777888888888888777766554332 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSL 286 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 286 (579)
.+...+-..|+.++|...+-+..+.. +.=...|..|...+..+|+...|+..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~q----------------------------p~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQ----------------------------PCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhC----------------------------CceeeeehhcchHHhhcchHHHHHHH
Confidence 33344445677777777776666552 22346677788888888888888888
Q ss_pred HHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC
Q 043608 287 FSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA 364 (579)
Q Consensus 287 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 364 (579)
|++.... .|+ ...|-.+-..+...+.++.|...|....... +....++..+...|-..|.++.|+..+++. ...|
T Consensus 241 y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 241 YEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred HHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 8777653 444 3456666666667777777777776665543 224455666666677777777777777765 3334
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 043608 365 D-SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442 (579)
Q Consensus 365 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 442 (579)
+ ...|+.|..++-..|+..+|...|++.... .|+ ..+.+.+...+...|.++.|..++....+.... -...++.|
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNL 394 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNL 394 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhH
Confidence 3 456777777777777777777777777665 333 456667777777777777777777776654322 23456667
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCch
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLV 518 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 518 (579)
...|-..|++++|...+++... |+ ...|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+.
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 7777777777777777777663 43 356777777777777777777777777663 454 44677777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhH
Q 043608 519 EEGLHLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 519 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 556 (579)
.+|+.-+++.. .+.||. +.|..++.++.-..++.+
T Consensus 473 ~~AI~sY~~aL---klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 473 PEAIQSYRTAL---KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHH---ccCCCCchhhhHHHHHHHHHhcccc
Confidence 77777777776 346653 356666666544444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-19 Score=172.58 Aligned_cols=298 Identities=15% Similarity=0.085 Sum_probs=233.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043608 209 IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFS 288 (579)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (579)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----------------------------PETVELHLALGNLFRRRGEVDRAIRIHQ 93 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----------------------------cccHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 445667899999999999999874 4566788889999999999999999999
Q ss_pred HHHhCCCCCC---hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCC-CC
Q 043608 289 EMRDRELLPD---GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGK-NA 364 (579)
Q Consensus 289 ~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 364 (579)
.+...+..++ ...+..+...+...|+++.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.. .|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 94 NLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 9987543222 2456777788888999999999999988763 34667888888899999999999999888721 11
Q ss_pred C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhH
Q 043608 365 D------SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFV 438 (579)
Q Consensus 365 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 438 (579)
+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 1 1235566777888899999999999988753 33455677777888889999999999998887654444566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH-- 514 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 514 (579)
++.+..+|.+.|++++|...++++. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhcc
Confidence 7888888999999999999888876 377666778888888999999999999888875 6888888877776654
Q ss_pred -cCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 515 -VGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 515 -~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
.|+.+++..+++++.+. ++.|++.
T Consensus 330 ~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHH-HHhCCCC
Confidence 45888899999988877 7777776
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=162.80 Aligned_cols=434 Identities=13% Similarity=0.113 Sum_probs=345.3
Q ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcC
Q 043608 38 YAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQN 114 (579)
Q Consensus 38 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 114 (579)
...|.....+.|++.+|++....+-..+ +.+....-.+-..+....+++....--....+ ....+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4456666778899999988887776554 33334444444556666666654433222222 3456899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChh-HHHHHHHHHhcCCCHHHHHH
Q 043608 115 YQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLI-AQNALIAMYTKFDRILDARN 192 (579)
Q Consensus 115 ~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 192 (579)
|+++.|+..|+.+++. +| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+.+...+...|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999986 44 46789999999999999999999999988864 4433 34456666777899999988
Q ss_pred HhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 193 VFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 193 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
.+.+..+. =..+|+.|...+-..|+...|++.|++..+.. +.=..+|-.
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld----------------------------P~f~dAYiN 257 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD----------------------------PNFLDAYIN 257 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC----------------------------CcchHHHhh
Confidence 88765543 24689999999999999999999999988763 233578889
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
|...|...+.++.|...|...... .|+. ..+..+...|...|.++.|+..|+..++.. +.-+..|+.+..++-..|
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhcc
Confidence 999999999999999999877654 6654 556677777889999999999999999875 335678999999999999
Q ss_pred ChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHH
Q 043608 349 VLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 349 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
++.+|...++.. -.+....+.+.|...+...|.+++|..+|....+- .|. ...++.+...|-..|++++|...++
T Consensus 335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 999999999886 22335778999999999999999999999988774 455 4578889999999999999999999
Q ss_pred HHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 426 YITKTGLAFD-VFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 426 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+..+. +|+ ...++.+...|-..|+.+.|.+.+.+...-+ ....+.|...|...|++.+|+.-+++..+ ++||
T Consensus 413 ealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 413 EALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 98874 454 5678899999999999999999999988643 35678899999999999999999999998 5777
Q ss_pred -hhHHHHHHHHhh
Q 043608 502 -LVTLVGVLTACS 513 (579)
Q Consensus 502 -~~~~~~l~~~~~ 513 (579)
+..|..++.++-
T Consensus 489 fpdA~cNllh~lq 501 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQ 501 (966)
T ss_pred CchhhhHHHHHHH
Confidence 346666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=173.88 Aligned_cols=300 Identities=11% Similarity=0.039 Sum_probs=192.6
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCC---hhHHHHHHHHHhcCCCH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSH---LIAQNALIAMYTKFDRI 187 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 187 (579)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22333455555555555666666665555554321111 23455666677777777
Q ss_pred HHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
+.|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+. .+.. ....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----------------------~~~~ 180 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLR----------------------VEIA 180 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-Ccch----------------------HHHH
Confidence 777777776654 3456777777888888888888888888776542 0000 0011
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......++..++.+|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 234556667777888888888888877642 2234455566677777888888888888777664333345567777788
Q ss_pred HhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc---cCChHHH
Q 043608 345 AKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK---MASLEMV 420 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a 420 (579)
...|++++|...++.+ ...|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 8888888888887775 33456566677777788888888888888877765 5777777777766553 4477788
Q ss_pred HHHHHHHHHcCCCCchh
Q 043608 421 TQLHCYITKTGLAFDVF 437 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~ 437 (579)
..+++.+.+.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 88888887766666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-18 Score=163.55 Aligned_cols=541 Identities=12% Similarity=0.078 Sum_probs=354.7
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhc
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFD 94 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 94 (579)
.+.|...|..+.+. .++|...+..-.+.....+++..|..+|...+.......+...-.+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 57888888888774 5555555444444455678888888888886654422222222334466678888888888888
Q ss_pred CCCCCCeeehhHHhhh------hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccC
Q 043608 95 KMPQRNVVSWTAMIAG------CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHG 168 (579)
Q Consensus 95 ~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (579)
+..+-|+..-++++.. +-....+..++.++...-..+ .-++...+.|.+.+...|+++.+..+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8776555444443332 112234455666666655442 345666777777777888888888887777665421
Q ss_pred --CChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHH
Q 043608 169 --SHLIAQNALIAMYTKFDRILDARNVFSGIARK---D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242 (579)
Q Consensus 169 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 242 (579)
.-...|--+.++|-..|+++.|...|.+..+. + +..+--+.+.+...|+.+.+...|+...+. .|+..-..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---~p~~~etm 379 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---LPNNYETM 379 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---CcchHHHH
Confidence 12334566777888888888888877665543 2 334556677778888888888888887776 33333222
Q ss_pred HHHHH---HH-------HHHHHHhhcCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHH----HhCCCCCChHHHHHH
Q 043608 243 SVFSA---CS-------NFARILFNEID---SPDLASWNALIAGVASHSNANEAMSLFSEM----RDRELLPDGLTVHSL 305 (579)
Q Consensus 243 ~~l~~---~~-------~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~l 305 (579)
.++.. .. ..+..+..... +.|...|-.+...+....-+ .++..|... ...+-.+.....+.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 22222 11 11333333333 34556666666666554443 336666543 455556778888888
Q ss_pred HHHhhcccchhhHHHHHHHHHHc---CCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHc-CCCCChh-hHHHHHH
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKM---GFDSNV------PVCNAILTMYAKCSVLCNALLVFKEL-GKNADSV-SWNSIIA 374 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~ 374 (579)
.......|++..|...+...... ...++. .+--.+...+-..++.+.|.+.|..+ ...|+-+ .|-.++.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 88888899999999888887665 122222 12223445556677889999999887 3444433 3444442
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHH-----
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIK----- 448 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----- 448 (579)
.....+...+|..+++...... ..++..+..+...+.+...+..|..-|....+.- ..+|+.+.-+|...|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 2333567888888888876642 3333344445556667777777777666665332 23566666667665542
Q ss_pred -------cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 043608 449 -------CGSLGSARKLFNFMENP---DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518 (579)
Q Consensus 449 -------~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 518 (579)
.+..+.|+++|.++.+. |...-|-+.-.++..|++.+|..+|.+..+.. .-+..+|..+.++|..+|++
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHH
Confidence 24567888888888753 44555667777889999999999999999874 33556888999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 519 EEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 519 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|++.|+...+.+.-.-++.+...|.+++.++|++.+|.+.+...
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999988776667888899999999999999999988766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-17 Score=144.98 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=218.1
Q ss_pred hhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhh--cchhhh-hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh
Q 043608 10 CKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACS--SLRSLQ-LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL 86 (579)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 86 (579)
..+|..+++--+|+.|.+. +.+.++..-..|++.-+ .+.++. .-++.|-.|.+.| +.+..+| +.|++
T Consensus 126 IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 4456666666777777666 66666655554444322 222222 2223344444444 2222222 34444
Q ss_pred hhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 87 EDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 87 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.+ ++-+.......+|..+|.++|+....+.|.++|++......+.+..+||.+|.+-. +....+++.+|....
T Consensus 196 Ad---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 AD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 44 33333444667899999999999999999999999988878888999999988644 333378889999988
Q ss_pred cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 167 HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
..||..++|+++.+..+.|+++.|.. .|++++.+|++-|+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGV------------- 308 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGV------------- 308 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCC-------------
Confidence 89999998888888888888877764 47888999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH-HHHHHHHHH----hCCCCC----ChHHHHHHHHHhhcccchhh
Q 043608 247 ACSNFARILFNEIDSPDLASWNALIAGVASHSNANE-AMSLFSEMR----DRELLP----DGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~----~~g~~p----~~~~~~~ll~~~~~~~~~~~ 317 (579)
+|+..+|..+|..+++.++..+ +..++.++. .+..+| |..-|...+..|.+..+.+.
T Consensus 309 --------------ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 309 --------------EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred --------------CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999888754 334444433 233333 33445566666666666666
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
|.++...+....-. ..++.. ....-|..+....|+....+....+|+.|.-.-
T Consensus 375 A~~v~~ll~tg~N~--------------------------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNW--------------------------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred HHHHHHHHHcCCch--------------------------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 66665544332100 000000 022234455556666666677777777776666
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
+-|+..+...++++..-.+.++-..++|..+...|...+......++..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 6677777777777777777777777777777766655544444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-17 Score=155.28 Aligned_cols=535 Identities=13% Similarity=0.067 Sum_probs=352.2
Q ss_pred CChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHh
Q 043608 13 NLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMG 92 (579)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 92 (579)
..+..|.-.|+.+.......+...++...........+++.|.+.|..+++.. +++.-.+---.......|++-.|+.+
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 34566777777666642223332233332222222233689999999999876 55554444334444467899999999
Q ss_pred hcCCCC------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHh---cCCCcchhHHHHHHHH
Q 043608 93 FDKMPQ------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKAC---SGLGSVCLGRQLHAHV 162 (579)
Q Consensus 93 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~---~~~~~~~~a~~~~~~~ 162 (579)
|..... ||+.. .+...+.+.|+.+.|+..|.+..+. .|+ +.++..|.-.- -....+..+.+++...
T Consensus 187 yk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 988542 33321 2234566889999999999999886 342 23333322222 2333455667776666
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD------VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
.... +.++.+.+.|...|...|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .|
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~ 338 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DN 338 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CC
Confidence 5543 4567888999999999999999999887766542 346888999999999999999999888766 34
Q ss_pred ChHhH--HHHHHHHHHH-----HHHHhhcCC---CCChhhHHHHHHHHHcCC----ChHHHHHHHHHHHhCCCCCChHHH
Q 043608 237 NEFIF--GSVFSACSNF-----ARILFNEID---SPDLASWNALIAGVASHS----NANEAMSLFSEMRDRELLPDGLTV 302 (579)
Q Consensus 237 ~~~~~--~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~ 302 (579)
+..++ ..+-+..... +...|+.+. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 43222 2222222211 333333332 334455555556665554 4456666666655442 3344455
Q ss_pred HHHHHHhhcccchhhHHHHHHHH----HHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC-C-----CCCh------
Q 043608 303 HSLLCACIGRLTLYQGMQVHSYI----IKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG-K-----NADS------ 366 (579)
Q Consensus 303 ~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-----~~~~------ 366 (579)
-.+-..+-. ++...++.++..+ ...+..+.+...|.+...+...|+++.|...|.... . .++.
T Consensus 418 l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 444444443 3444446555543 455666888899999999999999999999987751 1 1222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
.+--.+....-..++++.|.+.|..+... .|+-. .|..+....-..+...+|...++.....+ ..++..+..+...
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHH
Confidence 12223445555677899999999998886 55543 34444433334567888888888877543 3466667777778
Q ss_pred HHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHh------------cCCcHHHHHHHHHHHhCCCCCChhHHHHH
Q 043608 446 YIKCGSLGSARKLFNFME-----NPDVVSWSSLILGYAQ------------FGCGDEALKLFTRMRSLGVSPNLVTLVGV 508 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 508 (579)
+.+..++.-|..-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+..... +-|...-+.+
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGI 652 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGI 652 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccch
Confidence 888888888877555544 2566666666665542 245678999999988864 4477788888
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.-.++..|++.+|..+|.+..+. ......+|..+.++|..+|++-.|+++|+..
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999986 2345567889999999999999999999887
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-17 Score=164.60 Aligned_cols=414 Identities=12% Similarity=0.009 Sum_probs=186.2
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
+......+.+.|++++|+..|++.+.. .|+...|..+..++...|++++|++.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334555677788888888888887764 5677777777778888888888888888877754 2345566777777888
Q ss_pred CCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHHH-HHHHhhc
Q 043608 184 FDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA-YQPNEFIFGSVFSACSNF-ARILFNE 258 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~~l~~~~~~-~~~~~~~ 258 (579)
.|++++|+..|...... +......++..+.. ..+........+... ..|........+...... ...-+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 88888877666443211 11111111111111 112222222222210 001111000000000000 0000000
Q ss_pred CCC--CC-hhhHHHHHHH---HHcCCChHHHHHHHHHHHhCC-CCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 259 IDS--PD-LASWNALIAG---VASHSNANEAMSLFSEMRDRE-LLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 259 ~~~--~~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
... +. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++..++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 000 00 0000000000 011244555555555555433 1222 2233333344445555555555555555442
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+.....+..+...+...|++++|...|+.. ... .+...|..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 112334444445555555555555555443 111 133444555555555555555555555554432 22233344444
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh-hh-------HHHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDV-VS-------WSSLILGYA 478 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~-------~~~l~~~~~ 478 (579)
..+.+.|++++|...++...+.. +.++..++.+..++...|++++|...|+...+ |+. .. ++.....+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 44555555555555555544432 22344445555555555555555555554432 110 00 011111122
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
..|++++|.+++++..+. .|+ ...+..+...+...|++++|.+.|++..
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 235555555555554443 222 2244445555555555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-17 Score=164.58 Aligned_cols=318 Identities=10% Similarity=-0.080 Sum_probs=162.4
Q ss_pred HHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 177 LIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
++..+...|++++|..+++..... +......++.+....|++++|.+.++++....
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------------------- 106 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------------------- 106 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---------------------
Confidence 344455556666666665555332 33444444555555666666666666655543
Q ss_pred HHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC
Q 043608 254 ILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS 332 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (579)
+.+...+..+...+...|++++|...+++.... .|+ ...+..+...+...|++++|...++.+......+
T Consensus 107 -------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 107 -------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 334445555555666666666666666665543 232 3344445555556666666666665554443222
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
...+..+ ..+...|++++|...++.+ ... ++...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 178 -~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 178 -GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred -HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 2222222 2245556666666655554 111 122223333445555666666666666655542 223444445555
Q ss_pred HHhccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCC
Q 043608 410 ACAKMASLEM----VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGC 482 (579)
Q Consensus 410 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~ 482 (579)
.+...|++++ |...++...+... .+...+..+...+.+.|++++|...+++..+ |+ ...+..+..++.+.|+
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 5555555553 5555555554432 2445555555566666666666666555542 22 3344445555556666
Q ss_pred cHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLV-TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++|...++++.+. .|+.. .+..+..++...|+.++|...|++..+
T Consensus 334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666655553 23322 222234445556666666666665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=167.13 Aligned_cols=218 Identities=9% Similarity=-0.053 Sum_probs=91.0
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL 86 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 86 (579)
..+.++|++++|+.+++..... .+-++..+..++.+....|+++.|.+.++.+.+.. +.+...+..+...+...|++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444445555555554444442 22223333333344444455555555555544443 33344444444444444555
Q ss_pred hhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc-ccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 87 EDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ-FTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 87 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
++|...+++..+ | +...+..+...+...|++++|...++.+.... |+. ..+.. +..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIAT-CLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 555544444432 2 22334444444444455555555444443321 111 11111 11234444444454444444
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELE----ALCHFNEMLH 230 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~ 230 (579)
.+....++......+...+...|++++|...+++..+. +...+..+...+.+.|++++ |...|++..+
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 43322222222233334444444444444444443321 23344444444444444443 3444444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-17 Score=164.86 Aligned_cols=420 Identities=10% Similarity=-0.036 Sum_probs=280.4
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCC
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNY 115 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 115 (579)
......+.+.|++++|...|++.++. .|++..|..+..+|.+.|++++|++.++...+ | +...|..+..++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 34455567778888888888887764 45667777778888888888888888777664 2 3446777777788888
Q ss_pred ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 116 QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 116 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
++++|+.-|......+- .+......++..+.. ..+........+.. +.+...+..+.. +......+....-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 88888877766554321 111111111111111 11122222222221 112222222211 111111111111111
Q ss_pred ccCCCcH---hhHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 196 GIARKDV---TSWGSMIAA---FSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 196 ~~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
...+.+. ..+..+... ....+++++|.+.|+...+.+... +.....|+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~-------------------------~~~a~a~~~ 336 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG-------------------------EKEAIALNL 336 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC-------------------------hhhHHHHHH
Confidence 1111111 111111111 123468899999999988765200 334566788
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 888899999999999999998875 455 4567777788889999999999999998875 446788899999999999
Q ss_pred ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 349 VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++++|...|+.. ...| +...+..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++.
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999986 3333 56678888889999999999999999988752 44567888889999999999999999999
Q ss_pred HHHcCCCCchh------HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 427 ITKTGLAFDVF------VMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 427 ~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
..+.....+.. .++.....+...|++++|.+++++..+ | +...+..+...+.+.|++++|++.|++..+.
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88754332111 122223344557999999999998753 3 3456888999999999999999999998875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=164.94 Aligned_cols=390 Identities=8% Similarity=-0.010 Sum_probs=224.9
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
-.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445566677899999999998887622 3344457888888888999999999998887764 3345566677788888
Q ss_pred CCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCC
Q 043608 184 FDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEID 260 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 260 (579)
.|++++|+..+++..+. +.. +..+...+...|+.++|+..++++.+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------------- 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------------- 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------
Confidence 88998888888876542 455 7778888888888888988888888774
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH------HHHHHHHHhh-----cccch---hhHHHHHHHHH
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL------TVHSLLCACI-----GRLTL---YQGMQVHSYII 326 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~-----~~~~~---~~a~~~~~~~~ 326 (579)
+.+...+..+...+...+..++|+..++.... .|+.. .....+.... ..+++ ++|.+.++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 34555666677777788888888888876553 33310 1111112111 11223 45666666665
Q ss_pred Hc-CCCCCch-hHH----HHHHHHHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 327 KM-GFDSNVP-VCN----AILTMYAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 327 ~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
+. ...|+.. .+. ..+.++...|++++|+..|+.+... |+. .-..+...+...|++++|...|+++....
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 43 1122211 111 1122334556666666666665222 111 11123455666666666666666655432
Q ss_pred CCC---cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCc---hhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 397 IKP---DHITFNDVMGACAKMASLEMVTQLHCYITKTGL-----------AFD---VFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 397 ~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
... .......+..++...|++++|.+.++.+.+... .|+ ...+..+...+...|+.++|.+++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 110 112334444455666666666666666654321 111 112333444555555555555555
Q ss_pred hhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 460 NFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 460 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++.. .+...+..+...+...|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++.+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55442 22344455555555555555555555555553 233 33444444455555555555555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-16 Score=162.46 Aligned_cols=413 Identities=7% Similarity=-0.047 Sum_probs=233.6
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC---CCCeeehhHHh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP---QRNVVSWTAMI 108 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 108 (579)
+.++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|.+.+++.. ..+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4444444555666677778888888887776533 4455567777777778888888888887754 23445566667
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 188 (579)
..+...|++++|...+++..+.. +.+.. +..+...+...|+.++|...++++.+..+ .+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChH
Confidence 77777888888888888887752 33344 66677777788888888888888877653 24445555677777778888
Q ss_pred HHHHHhcccCCC-c------HhhHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 189 DARNVFSGIARK-D------VTSWGSMIAAFS-----KLGYE---LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 189 ~a~~~~~~~~~~-~------~~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
.|++.++..... + ......++.... ..+++ ++|++.++.+.+.-...|+.
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~--------------- 232 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA--------------- 232 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc---------------
Confidence 888888776651 1 011222222221 22233 67888888887552101111
Q ss_pred HHhhcCCCCChh-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC
Q 043608 254 ILFNEIDSPDLA-SWNALIAGVASHSNANEAMSLFSEMRDRELL-PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD 331 (579)
Q Consensus 254 ~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (579)
.|... .....+..+...|+.++|...|+.+.+.+.. |+. ....+..++...|++++|...++.+.+....
T Consensus 233 -------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 233 -------TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred -------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 01000 1111133456778999999999999877532 332 1222455677788888888888877654321
Q ss_pred C---CchhHHHHHHHHHhcCChHHHHHHHHHcCCC-CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH---hH
Q 043608 332 S---NVPVCNAILTMYAKCSVLCNALLVFKELGKN-ADSV-SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH---IT 403 (579)
Q Consensus 332 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~ 403 (579)
. .......+..++...|++++|.+.++.+... |... .+. ...-.|+. ..
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~-----------------------~~~~~p~~~~~~a 361 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG-----------------------SPTSIPNDDWLQG 361 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC-----------------------CCCCCCCchHHHH
Confidence 1 1223444455566666666666666655221 1100 000 00001221 12
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhc
Q 043608 404 FNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQF 480 (579)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~ 480 (579)
+......+...|+.++|.+.++++.... +.+...+..+...+...|++++|++.+++... |+ ...+..+...+.+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 2333444445555555555555554432 22344555555555555555555555555542 33 33334444455555
Q ss_pred CCcHHHHHHHHHHHh
Q 043608 481 GCGDEALKLFTRMRS 495 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~ 495 (579)
|++++|+.+++++.+
T Consensus 441 ~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 441 QEWRQMDVLTDDVVA 455 (765)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-15 Score=148.03 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=137.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCcHhHHHHHHHH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKN---ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-----IKPDHITFNDVMGA 410 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~ 410 (579)
-.+-++...|++.++++.|+.+... ....+-..+..+|...+++++|..+|+++.... ..++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 3455667778888888888887432 234455677788888888888888888875542 12233334667778
Q ss_pred HhccCChHHHHHHHHHHHHcCC-----------CCch---hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGL-----------AFDV---FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSL 473 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 473 (579)
+...+++++|..+++.+.+... .|++ ..+..++..+...|++.+|++.++++.. -|......+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888888876321 1221 2233456667788888888888888773 456677777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHH
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCV 544 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 544 (579)
...+...|.+.+|.+.++..... .|+ ..+....+.++...|++++|..+.+.+... .|+......|
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~---~Pe~~~~~~l 523 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR---SPEDIPSQEL 523 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---CCCchhHHHH
Confidence 78888888888888888766654 454 456667777788888888888888888754 4554444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-15 Score=149.44 Aligned_cols=415 Identities=12% Similarity=0.042 Sum_probs=305.0
Q ss_pred hhhcCCChhhHHHHHHHHHHCCCCCCc--ccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH
Q 043608 110 GCSQNYQENDAIKLYIQMLQSGVMPGQ--FTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI 187 (579)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 187 (579)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...+++.... -+........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 467899999999999999886 4554 234 8888888889999999999998821 122233334446688899999
Q ss_pred HHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
++|+++|+++.+. +...+..++..+.+.++.++|++.++++... .|+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----------------------------dp~~ 169 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----------------------------DPTV 169 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----------------------------Ccch
Confidence 9999999998764 5667778888999999999999999999876 4565
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCch------hH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVP------VC 337 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 337 (579)
..+..++..+...++..+|++.++++.+. .| +...+..+..+..+.|-...|.++...-... +.+... ..
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 56644545554566776799999999987 45 4566678888889999998888777652211 111100 00
Q ss_pred HHHHHHH---H--hcCC---hHHHHHHHHHc----CCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 338 NAILTMY---A--KCSV---LCNALLVFKEL----GKNADSV-----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 338 ~~l~~~~---~--~~~~---~~~a~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
...++.- . ...+ .+.|+.-++.+ +..|... ..--.+-++...+++.++.+.|+.|...|.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 1111100 0 1112 33344444443 3333322 122346677889999999999999999987766
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C--------
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTG-----LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-------- 465 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------- 465 (579)
..+-..+..+|...+.+++|..++..+.... ..++......|.-+|...+++++|..+++.+.+ |
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 6788899999999999999999999987543 123444457889999999999999999998874 2
Q ss_pred -----C--h-hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 466 -----D--V-VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 466 -----~--~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
| - ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++.... +.|+
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~ 482 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPR 482 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCc
Confidence 1 1 123445677889999999999999998763 44788899999999999999999999977764 3554
Q ss_pred -cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 -REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+....+.++...|++++|..+.+++
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456677888899999999999988777
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-14 Score=124.66 Aligned_cols=418 Identities=13% Similarity=0.117 Sum_probs=286.8
Q ss_pred eeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh--cCCCcchh-HHHHHHHHHHhccCCChhHHHHH
Q 043608 101 VVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC--SGLGSVCL-GRQLHAHVIKSEHGSHLIAQNAL 177 (579)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~--~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 177 (579)
+++-|.|+. ...+|....+.-+|+.|++.|++.+...-..|++.- ....++-- -++.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 455666665 445789999999999999999988887776666643 23333321 2233334444332 122222
Q ss_pred HHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhh
Q 043608 178 IAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFN 257 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 257 (579)
+.|...+ ++-+...+...+|..||.++|+-...+.|.+++++......
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~------------------------ 238 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG------------------------ 238 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh------------------------
Confidence 4454433 55555556778999999999999999999999999988766
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh----HHHHHHHHHHcCCCCC
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ----GMQVHSYIIKMGFDSN 333 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~ 333 (579)
+.+..+||.+|.+-.-. .-.+++.+|....+.||..||+.++.+..+.|+++. +.+++.+|.+.|+.|+
T Consensus 239 ---kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 239 ---KVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred ---eeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence 56677777777554322 226788889888899999999999999988887654 4578888889999999
Q ss_pred chhHHHHHHHHHhcCChHH-HHHHHHHc-----CC-----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C
Q 043608 334 VPVCNAILTMYAKCSVLCN-ALLVFKEL-----GK-----NA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ----I 397 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~-----~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~ 397 (579)
..+|..+|..+++.++..+ |..+..++ |. .| +...|...+..|.+..+.+-|.++-.-+.... +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999998888877654 33333333 21 12 44557777888888888888877765443321 3
Q ss_pred CCcH---hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----hhhH
Q 043608 398 KPDH---ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD----VVSW 470 (579)
Q Consensus 398 ~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~ 470 (579)
.|+. .-|..+....|.....+.....++.|.-.-.-|+..+...++++..-.+.++-.-+++..+..-+ ....
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 3442 24666777888889999999999999977788899999999999988898888888887776422 1111
Q ss_pred HHHHHHHHhcC-C-------------------c-HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 471 SSLILGYAQFG-C-------------------G-DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 471 ~~l~~~~~~~~-~-------------------~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.-++..+++.+ . + +.....-.+|.+..+ .....+..+-.+.+.|..++|.+++..+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 12222233222 1 1 111112234444433 34456666667889999999999999997
Q ss_pred HhhCCCCCcchhH---HHHHHHHhcCChhHHHHHHHhh
Q 043608 530 NEYGIIPTREHCS---CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 530 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+-.|.....+ .+++.-.+.++...|..+++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6644455555555 5666667888899999998877
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-13 Score=132.23 Aligned_cols=526 Identities=11% Similarity=0.036 Sum_probs=338.0
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCC---CCCCeeehhHHhhhhhcCCChhhHH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKM---PQRNVVSWTAMIAGCSQNYQENDAI 121 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (579)
+...|+.++|.+++.++++.. +.....|..|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 445588888888888888877 667788888888888888888887754332 2445677888888888888888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChh----HHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLI----AQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 122 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
-+|.+.++.. +++...+-.-+..|-+.|+...|...+.++....++.|.. .-..+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888763 4455555555667778888888888888888876544432 2334456666777778888887765
Q ss_pred CCC-----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhH----------------------HHHH-HH--
Q 043608 198 ARK-----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF----------------------GSVF-SA-- 247 (579)
Q Consensus 198 ~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~----------------------~~~l-~~-- 247 (579)
... +...++.++..+.+...++.|......+..... .+|+.-+ ..-+ ..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~-e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES-EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc-CCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 542 445778888888888888888888877776221 2222221 1100 10
Q ss_pred HHHH----------HHHHhhcC--CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch
Q 043608 248 CSNF----------ARILFNEI--DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315 (579)
Q Consensus 248 ~~~~----------~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 315 (579)
|.-. ...+.+.. +.-+...|.-+.+++...|++.+|+.+|..+......-+...|..+..++...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 1000 11111111 23456778889999999999999999999998875555677888888999999999
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHHH
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-----------ADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~ 384 (579)
+.|.+.|+.++... +.+..+-..|...+.+.|+.++|.+.+..+-.+ |+....-.....+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998875 335566667888889999999999999886211 222233344555667788777
Q ss_pred HHHHHHHHHHCC----------------------CCCcHhHHHHHHHHHhccCChHHHHHHHH------HHHHcCCCCch
Q 043608 385 LFRLFSRMLASQ----------------------IKPDHITFNDVMGACAKMASLEMVTQLHC------YITKTGLAFDV 436 (579)
Q Consensus 385 a~~~~~~m~~~~----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~ 436 (579)
-..+..+|...+ ......+...++.+-.+.++......-.. -....++..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666555554321 11122223333333333333222221111 11112222221
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHhhCCC------CCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHhC-CC--CCC-
Q 043608 437 --FVMNGLMDIYIKCGSLGSARKLFNFMEN------PDV---VSWSSLILGYAQFGCGDEALKLFTRMRSL-GV--SPN- 501 (579)
Q Consensus 437 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~p~- 501 (579)
..+.-++..+++.++.++|+.+...+.. ++. ..-...+.+.+..+++..|...++.|... +. .|.
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455677889999999999999988874 222 12244566778899999999999999865 11 222
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
...|+...+...+.|+-.--.+++.... ...|+ +.........+..++.+.-|.+.+-+. ...||.-..+-+|
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2345545555566555444344443333 22332 233334456677889999999877666 4567755555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=131.45 Aligned_cols=487 Identities=12% Similarity=0.104 Sum_probs=259.1
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHH-HHHHHHHccCChhhHHHhhcCCCC--CC------eeehhHHhhh
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQN-HILNMYGKCGSLEDARMGFDKMPQ--RN------VVSWTAMIAG 110 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~ 110 (579)
.|...|.....+.+|+..|+-+.+...-|+..... .+-..+.+..++.+|++.++.... |+ ....+.+...
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34445556666777777777777666555544332 233556666777777776654431 21 2234555556
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-| .+..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~----- 351 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEK----- 351 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCc-----
Confidence 77777777777777777665 566665555555555667777777777777654333322211 0000
Q ss_pred HHHhcccCCCcHhhHH-----HHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC-
Q 043608 191 RNVFSGIARKDVTSWG-----SMIAAFSKLG--YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP- 262 (579)
Q Consensus 191 ~~~~~~~~~~~~~~~~-----~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~- 262 (579)
..|+....+ -.+.-.-+.. +.++++-.-.++..--+ .|+ |..-...|.... -.....|
T Consensus 352 -------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi-~~~---fa~g~dwcle~l---k~s~~~~l 417 (840)
T KOG2003|consen 352 -------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVI-APD---FAAGCDWCLESL---KASQHAEL 417 (840)
T ss_pred -------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccc-ccc---hhcccHHHHHHH---HHhhhhhh
Confidence 001111111 1111111110 01111111111110000 111 000001110000 0000000
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH--HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL--LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAI 340 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (579)
-...--.-...+.+.|+++.|.++++-+.+..-+.-...-+.+ +.......++..|.++-+..+... .-++.....-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 0000001123466778888888888777655433322222222 122222344555555555544332 1122222222
Q ss_pred HHHHHhcCChHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCCh
Q 043608 341 LTMYAKCSVLCNALLVFKELGKNADSV---SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASL 417 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 417 (579)
.+.....|+++.|.+.+++.-.. |.. ....+.-.+-..|+.++|+..|-++..- +..+...+..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 22233467888888888776322 222 2222233355677888888877766443 334556666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
..|.+++.+.... ++.|+.+...|.+.|-+.|+-.+|.+.+-+--. .+..+..-|..-|....-+++++.+|++..
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7787777665543 345677788888888888888888777654442 455555556666777777788888888765
Q ss_pred hCCCCCChhHHHHHHHHh-hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 495 SLGVSPNLVTLVGVLTAC-SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 495 ~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
- +.|+..-|..++..| .+.|++.+|..+++..-+ .++.+.+.+..|++.+...| ..+|.++-++
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg-l~d~key~~k 718 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG-LKDAKEYADK 718 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence 4 578888787666554 467888888888888775 56677777777888777666 3445444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-14 Score=133.40 Aligned_cols=487 Identities=11% Similarity=0.044 Sum_probs=297.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCC
Q 043608 21 AYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRN 100 (579)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 100 (579)
++-.+... |+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++....+.++.+.+. +|.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44445555 99999999999999999999999999 9999998888888899999999988888888876 788
Q ss_pred eeehhHHhhhhhcCCChhhHHHHHHH-H-------HHCCCCCCcccHHHHHHHh--------------cCCCcchhHHHH
Q 043608 101 VVSWTAMIAGCSQNYQENDAIKLYIQ-M-------LQSGVMPGQFTFGSIIKAC--------------SGLGSVCLGRQL 158 (579)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~-------~~~g~~p~~~~~~~li~~~--------------~~~~~~~~a~~~ 158 (579)
..+|..|..+|.+.||... .+..++ | ...|+......+-..++++ ...|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866 222222 2 2223222112221121221 122222222222
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhcC-CCHHHHHHHhcccCC-CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 159 HAHVIKSEHGSHLIAQNALIAMYTKF-DRILDARNVFSGIAR-KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
+..+....... +... +++-.... ..+++-....+...+ +++.+|..++.+-..+|+.+.|..++.+|.++|.
T Consensus 162 l~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf--- 235 (1088)
T KOG4318|consen 162 LAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF--- 235 (1088)
T ss_pred HhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC---
Confidence 22221111000 0111 23333322 334444444444444 6888999999999999999999999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchh
Q 043608 237 NEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLY 316 (579)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 316 (579)
+-+.+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|...
T Consensus 236 ------------------------pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 236 ------------------------PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred ------------------------Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 5555555555544 7778888888888888889998888877666655533221
Q ss_pred hHH-----------HHHHHHHH-------------------------cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 317 QGM-----------QVHSYIIK-------------------------MGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 317 ~a~-----------~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
.+. .++..+.. .|+.....+|...+. ....|.-++...+-..+
T Consensus 289 ~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 289 YGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQL 367 (1088)
T ss_pred hcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhh
Confidence 111 01111100 122222222222221 22245555555555444
Q ss_pred CCC------CChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCCCCcHh----------
Q 043608 361 GKN------ADSVSWNSIIAACLQHN----------------------QAEELFRLFSRMLASQIKPDHI---------- 402 (579)
Q Consensus 361 ~~~------~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~~~~p~~~---------- 402 (579)
..+ -++..|..++.-|.+.- ...+..++.... .||..
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSST 442 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHH
Confidence 111 13334544444443321 111111111111 22211
Q ss_pred ------------------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 403 ------------------TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 403 ------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
.-+.++..|+..-+..++...-++....-+ ...|..|++.++.....+.|..+.++...
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 123344445555455555544444433322 26688899999999999999999999886
Q ss_pred CC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC-CCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 PD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV-SPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 ~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
+| ..-+..+.+.+.+.+....+..+++++.+.-. .|+ ..++..+++..+..|+.+...++.+-+... |+..
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~e 598 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSE 598 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhh
Confidence 54 34567788888899999999999999987422 222 345667777788889988888888877765 6655
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+ ..|+....+.++...|.+..+..
T Consensus 599 t----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 599 T----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred c----ccceEEEeeccchhhhhhcchHH
Confidence 3 34556667788888888776655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-14 Score=123.54 Aligned_cols=468 Identities=12% Similarity=0.056 Sum_probs=296.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHH-HHHHHhhcchhhhhhhhHHHHHHHhCCCCCh----hHHHHHHHH
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYA-GLISACSSLRSLQLGRKVHDHILLSKCQPDV----VLQNHILNM 79 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 79 (579)
|.+.|..+.-..+|+-.|+-+.+. ..-|+...+. .+-..+.+.+++.+|+.+|+..+..-...+. ...+.+--.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 445566667778899999988776 5556665443 3455678889999999999988876433333 334444456
Q ss_pred HHccCChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccH--------HHHHHHhcCC
Q 043608 80 YGKCGSLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTF--------GSIIKACSGL 149 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~--------~~li~~~~~~ 149 (579)
+.+.|++++|+..|+...+ ||..+-..|+-.+..-|+-++..+.|.+|+.-...||..-| ..|+.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 6789999999999998874 77655444444445568999999999999876555554433 1122211111
Q ss_pred Ccc--------hhHHHHHHH---HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc--HhhHHHHHHHHHhcC
Q 043608 150 GSV--------CLGRQLHAH---VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD--VTSWGSMIAAFSKLG 216 (579)
Q Consensus 150 ~~~--------~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~ 216 (579)
..+ ..|.+..-. +..--+.|+... ..+-..+.++.-.... ...--.-..-+.+.|
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 100 011111111 000011111100 0111111111110000 000011233578899
Q ss_pred ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH-HHHHc-CCChHHHHHHHHHHHhCC
Q 043608 217 YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI-AGVAS-HSNANEAMSLFSEMRDRE 294 (579)
Q Consensus 217 ~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~m~~~g 294 (579)
+++.|.++++-+.++.- +.....-+.|- -.|.+ ..++..|..+-+......
T Consensus 434 d~~~aieilkv~~~kdn---------------------------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDN---------------------------KTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred CHHHHHHHHHHHHhccc---------------------------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 99999999988876542 11112222222 22222 345666666655544221
Q ss_pred CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC--CCCChhhHHHH
Q 043608 295 LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG--KNADSVSWNSI 372 (579)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l 372 (579)
.-+......--......|++++|.+.|++.+...-.-....||. .-.+-..|++++|++.|-.+. ..-+......+
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11111111112233456888899998888876543322223332 223566899999999987761 12256667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
...|-...+...|++++.+.... ++.|+..+..+...|-+.|+-..|.+.+-.--+. ++.+..+..-|...|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 88888899999999999876554 5667888999999999999999999987654443 456788888899999999999
Q ss_pred HHHHHHHhhCC--CCChhhHHHHHHHH-HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 453 GSARKLFNFME--NPDVVSWSSLILGY-AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 453 ~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
+.|..+|++.. +|+..-|..++..| .+.|++++|+.+++....+ ++-|..++..|++.|...|.
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999765 89999999888665 4789999999999998875 66788899999999988874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-13 Score=126.75 Aligned_cols=452 Identities=12% Similarity=0.040 Sum_probs=231.1
Q ss_pred CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHH
Q 043608 99 RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALI 178 (579)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (579)
++..+|..++..-..+|+.+-|..++.+|.+.|.+.+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45556666666666677777777777777777777666666666554 566666777777777777777777766655
Q ss_pred HHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHH---------------------------------------hcCChH
Q 043608 179 AMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFS---------------------------------------KLGYEL 219 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------------------------------------~~~~~~ 219 (579)
..+...|....+.....--.--....+..++++.. ..|.-+
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 55555443222111110000001111112211110 112222
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---CCChHHHHHHHHHHHhC---
Q 043608 220 EALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS---HSNANEAMSLFSEMRDR--- 293 (579)
Q Consensus 220 ~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~--- 293 (579)
+..++...|. .|....-...+.+.....+..|.+...+........-.+... .....+..+.....+.+
T Consensus 359 ~veqlvg~l~-----npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~l 433 (1088)
T KOG4318|consen 359 EVEQLVGQLL-----NPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFL 433 (1088)
T ss_pred hHHHHHhhhc-----CCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHH
Confidence 2222222221 111111112222222224455555544433222111122221 22222333332222110
Q ss_pred -------------CCC-------CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 294 -------------ELL-------PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 294 -------------g~~-------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
... +-...-+.++..|++..+..++...-+.....-+. ..|..+|+.++.....+.|
T Consensus 434 r~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 434 RQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred HHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHH
Confidence 001 11122344555566666666665444443333222 5688888888888888888
Q ss_pred HHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc-HhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 354 LLVFKELGKN-----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD-HITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 354 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
..+..++..+ .+..-+..+.+.+.+.+....+.+++.++.+.-. .|+ ..++..++...+..|+.+...++++-
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 8888887443 2344567777788888888888888888876422 222 34555566666666666666666665
Q ss_pred HHHcCCCC------------------------------chhHHHHH---------------------HHHHHHcCCHHHH
Q 043608 427 ITKTGLAF------------------------------DVFVMNGL---------------------MDIYIKCGSLGSA 455 (579)
Q Consensus 427 ~~~~~~~~------------------------------~~~~~~~l---------------------~~~~~~~~~~~~A 455 (579)
+...|+.. .+.....+ +..|.++|+..+|
T Consensus 591 lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a 670 (1088)
T KOG4318|consen 591 LVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDA 670 (1088)
T ss_pred HHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccch
Confidence 55443322 11111111 1224455555555
Q ss_pred HHHHhhCC---C----------------------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 456 RKLFNFME---N----------------------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 456 ~~~~~~~~---~----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
.++.+.-- + .+......|+..|.+.|+++.|..+|.++. +.|+..+...|+.
T Consensus 671 ~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAs 747 (1088)
T KOG4318|consen 671 GDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLAS 747 (1088)
T ss_pred hhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHH
Confidence 44443221 0 011122347778899999999999999987 6788888777777
Q ss_pred HhhccC---chHHHHHHHHHHHHhhCCCCCcc-hhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 511 ACSHVG---LVEEGLHLYRIMENEYGIIPTRE-HCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 511 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.+.. +..++....++..+.+...|+.. -|...+....+-...+.|.+.+.+.
T Consensus 748 Ilr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ 805 (1088)
T KOG4318|consen 748 ILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERL 805 (1088)
T ss_pred HHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 776544 45555555555544322222222 2222222333444555778888777
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-12 Score=113.33 Aligned_cols=432 Identities=13% Similarity=0.116 Sum_probs=308.8
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhh
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLED 88 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 88 (579)
-..++++.+|..+|+++... ..-+...+...+..-.+++.+..|..+++.....-...| ..|-..+..=-..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 34567788999999999874 455667788888888899999999999999987653333 445555555567799999
Q ss_pred HHHhhcCCC--CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 89 ARMGFDKMP--QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 89 A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
|.++|++.. +|+..+|++.|..=.+.+.++.|..+|++.+- +.|+..+|.--.+.-.+.|+...+..+|....+.-
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999999887 59999999999999999999999999999987 47999999988888889999999999999887642
Q ss_pred c--CCChhHHHHHHHHHhcCCCHHHHHHHhcccC----CC-cHhhHHHHHHHHHhcCChHHHHHH--------HHHHHhc
Q 043608 167 H--GSHLIAQNALIAMYTKFDRILDARNVFSGIA----RK-DVTSWGSMIAAFSKLGYELEALCH--------FNEMLHH 231 (579)
Q Consensus 167 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~ 231 (579)
- ..+...+.+...--..+..++.|.-+|+-.. +. ....|..+...--+-|+.....+. ++.++..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 1123344455554555677788887775433 32 234444444444444544333322 2222222
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-------HHHH
Q 043608 232 GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-------TVHS 304 (579)
Q Consensus 232 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ 304 (579)
+ +-|-.+|--.++.-...|+.+...++|+....+ ++|-.. .|.-
T Consensus 318 n----------------------------p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 318 N----------------------------PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred C----------------------------CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 2 456777777888888889999999999999875 455221 2222
Q ss_pred HHHHh---hcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH----HhcCChHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 043608 305 LLCAC---IGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY----AKCSVLCNALLVFKEL-GKNADSVSWNSIIAAC 376 (579)
Q Consensus 305 ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~ 376 (579)
+=-+| ....+++.+.++++..++. ++....++.-+--+| .++.++..|.+++... |.-|...+|...|..=
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 21222 2467888889999888873 344555555444333 4567888888888654 7778888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHcCCHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIKCGSLGSA 455 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 455 (579)
.+.++++....+|++..+.+ +-|..+|......=...|+.+.|..+|....+.. +......+.+.|+.-...|.++.|
T Consensus 448 lqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 88888999999999888874 4466777777777777888899988888877432 344455666677777788888888
Q ss_pred HHHHhhCCC--CChhhHHHHHHH
Q 043608 456 RKLFNFMEN--PDVVSWSSLILG 476 (579)
Q Consensus 456 ~~~~~~~~~--~~~~~~~~l~~~ 476 (579)
..+++.+.+ +....|-++..-
T Consensus 527 R~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHhcccchHHHhHHHH
Confidence 888888874 455566655543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-12 Score=123.48 Aligned_cols=457 Identities=13% Similarity=0.096 Sum_probs=302.8
Q ss_pred HHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcch
Q 043608 77 LNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVC 153 (579)
Q Consensus 77 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~ 153 (579)
...+...|++++|.+++.++.+ .+..+|..|...|-..|+.+++...+--.-.. .+-|...|..+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 3344445999999999999885 45678999999999999999988776554333 2446678888888889999999
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH--------hhHHHHHHHHHhcCChHHHHHHH
Q 043608 154 LGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV--------TSWGSMIAAFSKLGYELEALCHF 225 (579)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 225 (579)
.|.-+|.+.++..+ ++....-.-...|-+.|+...|...|.++.+.++ ..--..++.+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998864 4455555567789999999999988888765322 12234466677788888999988
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-----------
Q 043608 226 NEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRE----------- 294 (579)
Q Consensus 226 ~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----------- 294 (579)
......+-. .-+...++.++..+.+..+++.+......+....
T Consensus 304 e~~~s~~~~--------------------------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 304 EGALSKEKD--------------------------EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHhhccc--------------------------cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 887764220 3455567788888888888888888887776522
Q ss_pred ----------------CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC--CCCCchhHHHHHHHHHhcCChHHHHHH
Q 043608 295 ----------------LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG--FDSNVPVCNAILTMYAKCSVLCNALLV 356 (579)
Q Consensus 295 ----------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (579)
+.++... ..++-++...+..+....+...+.+.+ +.-+...|..+..++...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1222222 122333445555556666666666666 344567788888999999999999999
Q ss_pred HHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHH----
Q 043608 357 FKELGKN---ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYIT---- 428 (579)
Q Consensus 357 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 428 (579)
|..+... -+...|-.+..+|...|.++.|.+.|+..... .|+ ...-..|...+.+.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 9888332 24567888899999999999999999988776 343 3444556667788899999999988854
Q ss_pred ----HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---------C-----------------ChhhHHHHHHHHH
Q 043608 429 ----KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---------P-----------------DVVSWSSLILGYA 478 (579)
Q Consensus 429 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~ 478 (579)
..+..|+..........+...|+.++-..+-..+.. | ........+.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 233455666666677778888887775444433331 1 0111112222222
Q ss_pred hcCCcHHHHHH------HHHHHhCCCCCCh--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch----hHHHHH
Q 043608 479 QFGCGDEALKL------FTRMRSLGVSPNL--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH----CSCVVD 546 (579)
Q Consensus 479 ~~~~~~~a~~~------~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~ 546 (579)
+.++.....+- +.--...|+..+. ..+.-++.++++.|++++|..+...+...+-+.-+..+ -...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 22222111111 1111112222221 13455666778888888888888877765433333332 233455
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
+....+++..|.+.+..|
T Consensus 675 ~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSV 692 (895)
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 566788888888888777
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-10 Score=107.64 Aligned_cols=473 Identities=12% Similarity=0.052 Sum_probs=296.5
Q ss_pred hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCC
Q 043608 53 LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGV 132 (579)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 132 (579)
.=.+++...+++- +.++..|...+ ...+.++|.-++.+..+--+. -.-|.-+|++..-++.|..+++..++. +
T Consensus 364 ~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 364 NKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3345555555543 44555555443 345556677777666641111 122333455666778888888888775 5
Q ss_pred CCCcccHHHHHHHhcCCCcchhHHHHHHHHH----HhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC------cH
Q 043608 133 MPGQFTFGSIIKACSGLGSVCLGRQLHAHVI----KSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK------DV 202 (579)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 202 (579)
+-+...|.+....--..|+.+...+++++-. ..|...+..-|-.=...+-..|..-.+..+...+..- --
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 6677777777776677788887777766543 3455556555555555555555555555554443221 22
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANE 282 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 282 (579)
.+|..-...|.+.+.++-|..+|....+-. +.+...|......--..|..+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf----------------------------p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF----------------------------PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc----------------------------cchhHHHHHHHHHHHhcCcHHH
Confidence 467777777777777777777777666543 3445556666655566677777
Q ss_pred HHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-
Q 043608 283 AMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL- 360 (579)
Q Consensus 283 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 360 (579)
...+|++.... .|-.. .+.......-..|+...|..++..+.+.... +..++-..+..-.....+++|..+|...
T Consensus 569 l~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 569 LEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 77777777765 34333 3333345556667888888888777776533 6667777777777777888888887766
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 439 (579)
...|+...|.--+..-.-.++.++|.+++++..+. -|+. ..|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 44456666666666666677778888887777665 4443 34555556666777777777766543332 23355666
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----C---------------
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL----G--------------- 497 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~--------------- 497 (579)
-.|...-.+.|.+-.|..++++..- .+...|-..|+.-.+.|+.+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 6666666777777777777776652 34566777777777777777777766655432 1
Q ss_pred ----------CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh-c
Q 043608 498 ----------VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM-A 565 (579)
Q Consensus 498 ----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 565 (579)
+.-|++.+..+...+-...+++.|.+.|++..+. .| ..++|.-+.+.+.+.|.-++-.+++++. .
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1234444555555666666777777777777643 33 3456666777777777777777777766 3
Q ss_pred CCCC
Q 043608 566 CDAD 569 (579)
Q Consensus 566 ~~~~ 569 (579)
..|.
T Consensus 880 ~EP~ 883 (913)
T KOG0495|consen 880 AEPT 883 (913)
T ss_pred cCCC
Confidence 3443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-10 Score=103.95 Aligned_cols=446 Identities=11% Similarity=0.021 Sum_probs=256.7
Q ss_pred HHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHH----HHHCCCCCCcccHHHHHHHhcCCCcc
Q 043608 80 YGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQ----MLQSGVMPGQFTFGSIIKACSGLGSV 152 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~g~~p~~~~~~~li~~~~~~~~~ 152 (579)
|++..-++.|.++++...+ .+...|-+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3344445555555544442 2334444333333344555554444433 22344444444444444444444554
Q ss_pred hhHHHHHHHHHHhccCC--ChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 153 CLGRQLHAHVIKSEHGS--HLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 153 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
-.+..+....+..|+.. -..+|..-...|.+.+.++-|+.+|....+- +...|...+..--..|..++...+|++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444444444444321 1234444444455555555555544433321 223333333333334444444444444
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHH------HHHHhhcCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNF------ARILFNEID---SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~------~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
.... -|....+-.+.....-. ++.++.... +.+...|-..+.......+++.|..+|.+... ..|+
T Consensus 576 av~~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgT 650 (913)
T KOG0495|consen 576 AVEQ---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGT 650 (913)
T ss_pred HHHh---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCc
Confidence 4433 11111111110000000 111111100 34666777777788888888888888877765 3666
Q ss_pred hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC-hhhHHHHHHHH
Q 043608 299 GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD-SVSWNSIIAAC 376 (579)
Q Consensus 299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~ 376 (579)
...|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|.+.|..= ..-|+ +..|-.+...=
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 666666666556677888888888777765 3444556777777777788888887776553 33233 44565555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSAR 456 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 456 (579)
-+.|+.-+|..++++..-.+ +-+...|...|..=.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-..+.
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 66778888888888877664 446667777788888888888888887776653 3445566666666655555544444
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 457 KLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
..+++.. .|+...-.+...+-...++++|.+.|.+.++.+ +-+..+|..+...+...|.-+.-.+++..... ..|
T Consensus 808 DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~---~EP 882 (913)
T KOG0495|consen 808 DALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET---AEP 882 (913)
T ss_pred HHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc---cCC
Confidence 4444433 455556666777888889999999999999864 22456888889999999998998999998874 355
Q ss_pred Cc
Q 043608 537 TR 538 (579)
Q Consensus 537 ~~ 538 (579)
..
T Consensus 883 ~h 884 (913)
T KOG0495|consen 883 TH 884 (913)
T ss_pred CC
Confidence 53
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=122.54 Aligned_cols=279 Identities=10% Similarity=0.019 Sum_probs=210.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHH--HHHHHHHhcCChHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLT-VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN--AILTMYAKCSVLCNA 353 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 353 (579)
.|+++.|.+.+....+.. +.+.. |.....+..+.|+++.+.+.+..+.+.. |+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888765542 22233 3333455578999999999999998754 4443322 346788899999999
Q ss_pred HHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------hHHHHHHHHHhccCChHHHHHHH
Q 043608 354 LLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-------ITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 354 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
...++.+ ...| +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987 2223 5667888999999999999999999999988755332 12333344334444556666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhH
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVT 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 504 (579)
+.+-+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+.+..++.+++.+..++..+.. +-|...
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 655332 245788888999999999999999999988875222222334555567799999999999999862 334557
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+.+.|...|++++|.+.|+...+ ..|+...+..+..++.+.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999999985 4799999999999999999999999999876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-12 Score=122.64 Aligned_cols=285 Identities=12% Similarity=-0.026 Sum_probs=209.2
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
...|+++.|.+.+....+. .|+...+ -....+....|+.+.+.+.+....+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887665 4554443 344567788899999999999988765333333444567888899999999
Q ss_pred HHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH---hccCChHHHHHHHHHHH
Q 043608 354 LLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC---AKMASLEMVTQLHCYIT 428 (579)
Q Consensus 354 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~ 428 (579)
...++.+ ...| +......+...+...|++++|.+++..+.+.++.++......-..+. ...+..+.+.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987 2223 55678889999999999999999999999987543332211111111 22223333334555544
Q ss_pred HcCC---CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhh---HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 429 KTGL---AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVS---WSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 429 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
+... +.++..+..+...+...|+.++|.+.+++..+ ||... ...........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 4332 23788888999999999999999999999875 55442 122222334567888999999888875 45
Q ss_pred C-h--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 501 N-L--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 501 ~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+ + ....++.+.|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++-
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 4 56678999999999999999999954432 55799999999999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-10 Score=99.29 Aligned_cols=479 Identities=10% Similarity=0.044 Sum_probs=283.1
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCe-eehhHHhhhhhcCCChhhHHHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNV-VSWTAMIAGCSQNYQENDAIKLY 124 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~ 124 (579)
.+++..|..+|+..+..+ ..+...|...+.+=.++..+..|..++++... |-+ ..|.-.+..=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445555666666665544 33445555555555555566666666655542 211 12332332223345666666666
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC----
Q 043608 125 IQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK---- 200 (579)
Q Consensus 125 ~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 200 (579)
++..+- .|+...|.+.|+.-.+.++.+.|..+++..+-. .|+...|-....---+.|....+.++++...+.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 665553 566666666666555556666666666555432 355555555555555556655555555544321
Q ss_pred --cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHcC
Q 043608 201 --DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP-DLASWNALIAGVASH 277 (579)
Q Consensus 201 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 277 (579)
+...+.+....-.+...++.|.-+|+-.++. +++. ....|......--+-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---------------------------~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH---------------------------IPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCcccHHHHHHHHHHHHHHh
Confidence 1122333333333344445555555444433 1111 133444444444445
Q ss_pred CChHHHHHHH--------HHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc-hhHHHHHHH-----
Q 043608 278 SNANEAMSLF--------SEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV-PVCNAILTM----- 343 (579)
Q Consensus 278 ~~~~~a~~~~--------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~----- 343 (579)
|+.....+.. +.+... -+-|-.++.-.+..-...|+.+...++|+..+..-.+.+. ..+...|-.
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 6554444332 333333 2446667777777777889999999999999876433221 112222211
Q ss_pred ---HHhcCChHHHHHHHHHc-C-CCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 344 ---YAKCSVLCNALLVFKEL-G-KNADSVSWN----SIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 344 ---~~~~~~~~~a~~~~~~~-~-~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
-....+++.+.++|+.. . .+....||. ....--.++.+...|.+++.... |..|...+|...|..=.+.
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 12467889999999875 2 222333443 33333457889999999998775 4589999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCC----hhhHHHHHHHHHhcCCcHHHHHH
Q 043608 415 ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME-NPD----VVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 415 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
++++....++++..+.++. +..++......-...|+.+.|..+|+-.. +|. ...|.+.|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 9999999999999987643 66778877888888999999999999776 454 34566666666789999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhh-----ccC-----------chHHHHHHHHHHHHhhCCCCCcchhHHHHHHH----H
Q 043608 490 FTRMRSLGVSPNLVTLVGVLTACS-----HVG-----------LVEEGLHLYRIMENEYGIIPTREHCSCVVDLL----A 549 (579)
Q Consensus 490 ~~~m~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 549 (579)
++++.+. .+....|..+...-. +.| ....|..+|++....+.-.-+..--..|+.+. .
T Consensus 530 YerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~ 607 (677)
T KOG1915|consen 530 YERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEE 607 (677)
T ss_pred HHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999985 344445555554332 334 56788889988765432222222223333333 3
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|+......+-.+|
T Consensus 608 ~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 608 TFGTEGDVERVQSKM 622 (677)
T ss_pred hcCchhhHHHHHHhc
Confidence 445555555555555
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-11 Score=107.55 Aligned_cols=301 Identities=15% Similarity=0.062 Sum_probs=199.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD--SNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 349 (579)
.++-...+.+++..-.+.....|.+-....-+....+.....++++|+.+|+++.+..+- .|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444445567777777777777776555555555555556777888888888888877321 144556555533322222
Q ss_pred hH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 350 LC-NALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 350 ~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+. -|..+++--.. .+.|..++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+.++...
T Consensus 315 Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 12222222122 34466666677777788888888888887763 2234456666677888888888888888887
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
+.+ +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 765 33777788888888888888888888887763 577888888888888888888888888888765 3456778
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhh---C-CCC-CcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEY---G-IIP-TREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
..|...|-+.++.++|...+++..+.. | ..| ......-|...+.+.+++++|-.+.... ...+...--++|+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll 547 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 888888888888888888888776532 2 122 1222333566677888888888876665 2244444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-15 Score=133.26 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=98.7
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcC-CCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTN-IRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
-..+.+.|++++|+++++..... . .+.++..+..+.......++++.|.+.++.+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 45677788888888888655443 2 23344444455555667788888888888888766 4466677777776 6788
Q ss_pred ChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCC-CCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 85 SLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSG-VMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 85 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
++++|.++++..-+ ++...+...+..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776643 566667777888888888888888888876532 234556677777788888888888888888
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
.++..+ .+..+...++..+...|+.+++.++++...+ .|...+..+..++...|+.++|+.+|++..+..
T Consensus 172 al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------ 244 (280)
T PF13429_consen 172 ALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN------ 244 (280)
T ss_dssp HHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------
T ss_pred HHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc------
Confidence 888753 3566777888888888888887666655533 356677788888888888888888888887764
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
+.|+.....+.+++...|+.++|.++.++..
T Consensus 245 ----------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 ----------------------PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ----------------------TT-HHHHHHHHHHHT----------------
T ss_pred ----------------------ccccccccccccccccccccccccccccccc
Confidence 4567777778888888888888888777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=124.67 Aligned_cols=275 Identities=9% Similarity=-0.058 Sum_probs=181.7
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHH-HHHHHccCChhhHHHhhcCCCC--CCeeehh--HHhhhhhcCCChhhHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHI-LNMYGKCGSLEDARMGFDKMPQ--RNVVSWT--AMIAGCSQNYQENDAIK 122 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~ 122 (579)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.++++.+ |+..... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666654432 122322222 3333577777777777777664 3332222 22445667777888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCCh-------hHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHL-------IAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 123 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
.++++.+.+ +-+......+...+...|+++.|.+++..+.+.+..++. ..+..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877777663 334556666777777777888888777777776543322 133344444445556667777777
Q ss_pred ccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 043608 196 GIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIA 272 (579)
Q Consensus 196 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~ 272 (579)
.+++ .++.....+...+...|+.++|.+.+++..+. +++... .++.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----------------------------~~~~~l--~~l~ 302 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----------------------------QYDERL--VLLI 302 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------------------CCCHHH--HHHH
Confidence 6654 36677788888888888888888888887764 333311 1233
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 043608 273 GVASHSNANEAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351 (579)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (579)
+....++.+++++.++...+. .|+.. .+..+-..|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.+
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 444558888888888888765 45544 4556667788888888888888888875 577777778888888888888
Q ss_pred HHHHHHHHc
Q 043608 352 NALLVFKEL 360 (579)
Q Consensus 352 ~a~~~~~~~ 360 (579)
+|.+++++-
T Consensus 379 ~A~~~~~~~ 387 (398)
T PRK10747 379 EAAAMRRDG 387 (398)
T ss_pred HHHHHHHHH
Confidence 888888764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-09 Score=102.37 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=53.2
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHh-CCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLS-KCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNY 115 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (579)
.+...+..+...|++......|+..+.. .+.-....|...+......|-++.+..++++..+-++..-+..|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4444455555566666666666655532 122233455555665555666666666666666555555566666666666
Q ss_pred ChhhHHHHHHHHHH
Q 043608 116 QENDAIKLYIQMLQ 129 (579)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (579)
++++|.+.+.....
T Consensus 184 ~~~eaa~~la~vln 197 (835)
T KOG2047|consen 184 RLDEAAQRLATVLN 197 (835)
T ss_pred chHHHHHHHHHhcC
Confidence 66666666665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=128.89 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=62.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHH-HHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL-CACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
.+...+.+.|++++|+++++.......+|+...|..++ ..+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777888888888886554443234444444333 3444566677777777777665432 44444444444 455
Q ss_pred CChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++|.+++... ...++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666665555443 222344445555555555555555555555544322 12333344444444445555555555555
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
+..+..+. |.. ....++..+...|+.+++.++++...+.. +.|+..+
T Consensus 171 ~al~~~P~-~~~-------------------------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 171 KALELDPD-DPD-------------------------------ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp HHHHH-TT--HH-------------------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHHHcCCC-CHH-------------------------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 54443311 233 44444445555555555444444444432 2333444
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
..+..++...|+.++|..++++..+. .+.|+.....+.+++...|+.++|.++..+
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 45555555555555555555554432 122444445555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-11 Score=117.03 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=82.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH--H-HHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHIT--F-NDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FVM 439 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 439 (579)
+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++...+.. +-|+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 5566666777777777777777777777665 233321 1 111122233456667777776666543 2233 556
Q ss_pred HHHHHHHHHcCCHHHHHHHHhh--CC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 440 NGLMDIYIKCGSLGSARKLFNF--ME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
.++...+.+.|++++|.+.|+. .. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777778888888888888883 32 4777777778888888888888888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-10 Score=97.47 Aligned_cols=451 Identities=13% Similarity=0.032 Sum_probs=254.3
Q ss_pred HHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChh
Q 043608 42 ISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQEN 118 (579)
Q Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 118 (579)
+.-+...+++..|+.+++.-...+-+....+-.-+..++.+.|++++|+..+..+.+ ++...+-.|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444556677888888877766544333334444555666678888888887766653 45555666665555567777
Q ss_pred hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 119 DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 119 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
+|..+-....+ ++.....+++..-+.++-++-..+...+... ..-.-+|.+.....-.+.+|+++++++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554322 2223334444444556655555554443322 1222234444444456778888888776
Q ss_pred CCcH--hhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 043608 199 RKDV--TSWGS-MIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVA 275 (579)
Q Consensus 199 ~~~~--~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (579)
..+. ...|. +.-+|.+..-++-+.++++--...- +.+..+-|.......
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~----------------------------pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF----------------------------PDSTIAKNLKACNLF 230 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHh
Confidence 5433 23333 3345667777777777777666551 223333444333333
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
+.=.-..|.+-.+++.+.+-..-+..-..+-+-+.--.+-+.|.+++-.+.+. . +..-..++-.|.+.+++.+|..
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHH
Confidence 32222223333344433322111110001111122234556777776665543 1 2233345666888999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQ-------AEELFRLFSRMLASQIKPDH-ITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
+.+++... ++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|. .---++...+.-..+++++.-+++.+
T Consensus 307 L~Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 307 LCKDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HHhhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988543 32222221222233332 33455555544334332221 12223445555566788888888887
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHH-HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh
Q 043608 428 TKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP---DVVSWS-SLILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503 (579)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 503 (579)
...-...|...+| +.++++..|++.+|+++|-.+..| |..+|. .|.++|.+.+.++.|..++-++. -+.+..
T Consensus 386 ~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~f 461 (557)
T KOG3785|consen 386 ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERF 461 (557)
T ss_pred HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHH
Confidence 7665554554444 788899999999999999888864 345554 46678889999998887765443 233344
Q ss_pred H-HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 504 T-LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 504 ~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+ +..+.+-|.+.+.+=-|-+.|+.+.. ..|+++.|.
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC
Confidence 3 34555778899998888888888874 467766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-09 Score=100.09 Aligned_cols=280 Identities=10% Similarity=0.035 Sum_probs=205.5
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+.+.- +..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 34444555556677788888888888888765 24455555555667777787777777666666653 45677788888
Q ss_pred HHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH
Q 043608 342 TMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 419 (579)
--|...|+..+|.+.|... ...| =...|-.+..+|+-.+..+.|+..|....+. ++-..--+..+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 8888889999999999775 2221 2446888888899999999999988877664 22222223344456777889999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------C----ChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------P----DVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
|.++|....... +.|+.+.+.+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998877543 34677777777777778889999888887652 1 234577788889999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 490 FTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 490 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+++.... .+-+..++.++.-.|...|+++.|.+.|.+.. .+.|+-.+-..++..+.
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHHH
Confidence 9998876 24577888888888999999999999999887 67888776666666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-10 Score=102.68 Aligned_cols=403 Identities=13% Similarity=0.043 Sum_probs=252.1
Q ss_pred HHhhhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCC-hhHHHHHHHHHhc
Q 043608 106 AMIAGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSH-LIAQNALIAMYTK 183 (579)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 183 (579)
....-|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+--...++.+ |+ ...+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHh
Confidence 3445577899999999999999985 677 7778888889999999999888777766643 33 4455566667777
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHH--------HHHHh-cC-CCCCChHhHHHHHHHHHHHHH
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHF--------NEMLH-HG-AYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~m~~-~~-~~~p~~~~~~~~l~~~~~~~~ 253 (579)
.|++++|+.= .+-.+++..+....-.--+.+++ ++-.+ .+ .+-|+.....+.+.....
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~--- 263 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA--- 263 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc---
Confidence 8888877642 12222222222222222222222 22222 11 113443333333322211
Q ss_pred HHhhcCCCCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhC-CCCCChH---------HHHHHHH--Hhhcccchh
Q 043608 254 ILFNEIDSPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDR-ELLPDGL---------TVHSLLC--ACIGRLTLY 316 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~-g~~p~~~---------~~~~ll~--~~~~~~~~~ 316 (579)
+....+..+...++..+..++.. ...+.+|.+.+.+-... ...++.. .-..++. -+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 01111111222233333332221 12355555555432211 1111111 1122222 234568888
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 317 QGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
.+.+-++..++....++ ..|.-+..+|...++.++.++.|+.. -.+-++.+|..-.....-.+++++|..=|++.+.
T Consensus 344 ~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888764433 33777777888999999999999876 1222666777777777778889999999998877
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC------
Q 043608 395 SQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD------ 466 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------ 466 (579)
.. +-+...|..+--+..+.+.++++...|++.++. ++-.+..|+...+.+...++++.|.+.|+...+ |+
T Consensus 423 L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 423 LD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 52 223455666666667888999999999988864 455788899999999999999999999987763 33
Q ss_pred -hhhH--HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 467 -VVSW--SSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 467 -~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
..++ -.++. +.-.+++..|++++++..+. .|. ...|..|...-...|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 11111 12347899999999999875 443 45888999999999999999999998764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-08 Score=93.48 Aligned_cols=521 Identities=12% Similarity=0.103 Sum_probs=299.7
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|-..+..+.++|+...-...|++..+.=++..+...|...+......+-++-+..+++.-++. ++..-+-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 455667788889999999999988775455666778888888888888888999999998854 4444677788889
Q ss_pred ccCChhhHHHhhcCCCCC----------CeeehhHHhhhhhcCCCh---hhHHHHHHHHHHCCCCCCc--ccHHHHHHHh
Q 043608 82 KCGSLEDARMGFDKMPQR----------NVVSWTAMIAGCSQNYQE---NDAIKLYIQMLQSGVMPGQ--FTFGSIIKAC 146 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~p~~--~~~~~li~~~ 146 (579)
..+++++|.+.+..+... +-..|+.+-...+++.+. -...++++.+... -+|. ..|.+|..-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 999999999888877631 223344444444433222 2233344443332 3333 3567777778
Q ss_pred cCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----------------------HHHHHHHhcccCCC----
Q 043608 147 SGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----------------------ILDARNVFSGIARK---- 200 (579)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~---- 200 (579)
.+.|.+++|..+|++....-. +..-++.+.+.|+.... ++-....|+.+..+
T Consensus 259 Ir~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 888888888888877665432 22222233333332111 11122222222211
Q ss_pred -----------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCC-CChhhHH
Q 043608 201 -----------DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDS-PDLASWN 268 (579)
Q Consensus 201 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 268 (579)
++..|..-+ -+..|+..+-...+.+..+.- .|. ... .-...|.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v--dP~---------------------ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV--DPK---------------------KAVGSPGTLWV 391 (835)
T ss_pred HHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc--Ccc---------------------cCCCChhhHHH
Confidence 111111111 122344444445555444331 111 001 1124577
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHhhcccchhhHHHHHHHHHHcCC-----------CC--
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPD---GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF-----------DS-- 332 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~-- 332 (579)
.+.+.|-..|+.+.|..+|++..+...+-- ..+|......=.+..+++.|..+.+.....-- ++
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 788888999999999999988876533221 12222222333456677777777766543211 11
Q ss_pred ----CchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HH
Q 043608 333 ----NVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TF 404 (579)
Q Consensus 333 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~ 404 (579)
+..+|...++.--..|-++....+++.+ ... ++...-....-+-.+.-++++.++|++-+..--.|+.. .|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 2233444444445566677777777665 222 22221111222334556788888888766554455543 34
Q ss_pred HHHHHHHh---ccCChHHHHHHHHHHHHcCCCCchhHHHHH--HHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHH
Q 043608 405 NDVMGACA---KMASLEMVTQLHCYITKTGLAFDVFVMNGL--MDIYIKCGSLGSARKLFNFMEN-----PDVVSWSSLI 474 (579)
Q Consensus 405 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 474 (579)
+..+.-+. ...+.+.|..+|++..+ |.+|...-+--| ...-.+.|....|.+++++... .-...||+.|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44443332 23478899999999998 655443221111 2222345778889999998763 2245677777
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH---HHHHhhccCchHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHH
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG---VLTACSHVGLVEEGLHLYRIMENEYGIIP--TREHCSCVVDLLA 549 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 549 (579)
.--...=-+.....+|++.++. -|+...-.. ....-.+.|..++|..++..-.+ -..| +...|...-..=.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEv 705 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEV 705 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHH
Confidence 6544444456677888888875 566554333 34445788999999999987765 3344 3445666666667
Q ss_pred hcCChhHHHHHH
Q 043608 550 RAGCVHEAEDFI 561 (579)
Q Consensus 550 ~~g~~~~A~~~~ 561 (579)
+.|+-+.-.+.+
T Consensus 706 rHGnedT~keML 717 (835)
T KOG2047|consen 706 RHGNEDTYKEML 717 (835)
T ss_pred hcCCHHHHHHHH
Confidence 888855444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.5e-11 Score=100.95 Aligned_cols=289 Identities=7% Similarity=0.010 Sum_probs=181.8
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC-CCee------ehhHHhhhhhcCCChhhH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ-RNVV------SWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a 120 (579)
+.++++|.+.|-+|.+.+ +.+..+..+|-+.|-+.|+.+.|+++.+.+.+ ||.. +.-.|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457888888888888755 55566777888888888999999988887764 5433 233445557778888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK 200 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (579)
..+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+..+...-
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--------------------------- 178 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--------------------------- 178 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---------------------------
Confidence 88888887754 12233445566666666666666666666555543221100
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
=..-|.-|...+....+++.|..++.+..+.. +..+..--.+.+.....|++
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~----------------------------~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQAD----------------------------KKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC----------------------------ccceehhhhhhHHHHhccch
Confidence 01235556666666777888888887777663 23333334455777778888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH-HHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL-VFKE 359 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~ 359 (579)
+.|.+.++...+.+..--+.+...+..+|...|+.+.....+..+.+....+ ..-..+.+......-.+.|.. +.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 8888888887776544445566677777777777777777777777664333 233333333333333444443 3445
Q ss_pred cCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 043608 360 LGKNADSVSWNSIIAACLQ---HNQAEELFRLFSRMLAS 395 (579)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~ 395 (579)
+..+|+...+..+|..-.. .|...+.+..++.|...
T Consensus 309 l~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 309 LRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 5677777777777766543 33455566666666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=98.78 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=200.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN---VPVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 352 (579)
-+++.++|.++|-+|.+. -+-+..+-.++-+-|.+.|..+.|+.+...+.+..--+. ......|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357889999999999873 122334445666778889999999999988886521111 1233456677888899999
Q ss_pred HHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh----HHHHHHHHHhccCChHHHHHHHHH
Q 043608 353 ALLVFKELGKNA--DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI----TFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 353 a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
|+.+|..+-..| -......++..|-...+|++|+++-+++...+-++... .|.-+...+....+.+.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999998884432 34567788889999999999999999888876555433 344555566667788889999988
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 502 (579)
..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.++.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8876533 455555677888889999999999998886443 345677888999999999999999888763 444
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc---CChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA---GCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 564 (579)
..-..+...-....-.+.|..++.+-..+ .|+...+..|++.-... |..++-...+.+|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 44444444444444556666665555544 68888888888876533 4456666677777
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-10 Score=99.45 Aligned_cols=249 Identities=11% Similarity=0.037 Sum_probs=135.1
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 384 (579)
+..+.|+.+.+-.++.++.+..-.++..+.-+........|+.+.|..-..++ ... ++........+|.+.|++..
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHH
Confidence 33344444444444444444332334444444445555555555555444443 222 44455555666666666666
Q ss_pred HHHHHHHHHHCCCCCcH-------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 043608 385 LFRLFSRMLASQIKPDH-------ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARK 457 (579)
Q Consensus 385 a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 457 (579)
...++..|.+.|.-.+. .++..+++-+...+..+.-...|+..-+. .+.++..-.+++.-+.++|+.++|.+
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 66666666666543332 25556666555555555545555443321 23345555566666666677777766
Q ss_pred HHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 043608 458 LFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII 535 (579)
Q Consensus 458 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 535 (579)
+.++..+ -|.. -...-.+.+-++.+.-++..++-.+. .+-++-.+.+|...|.+.+.|.+|.+.|+... ...
T Consensus 285 ~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~ 358 (400)
T COG3071 285 IIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLR 358 (400)
T ss_pred HHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcC
Confidence 6665553 2222 22223344555555555555554443 12233556666666777777777777777555 346
Q ss_pred CCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 536 PTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|+.++|.-+.+++.+.|+..+|.++.++.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 77777777777777777777777766654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-09 Score=97.37 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=122.7
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 188 (579)
+-.....+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333445555555556665555444333333333444455666666666666666532 223445554443222222211
Q ss_pred -HHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhH
Q 043608 189 -DARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASW 267 (579)
Q Consensus 189 -~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
-|..++ .+.+=-+.|...+.+.|.-.++.++|...|++..+.+ +.....|
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----------------------------p~~~~aW 367 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN----------------------------PKYLSAW 367 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----------------------------cchhHHH
Confidence 111111 1111123444455555555666666666666665554 3444555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
+.+.+-|...++...|.+-|+...+-. +.|-..|-.+-++|.-.+...-|+-.|++..+.. +.|...+.+|.++|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHh
Confidence 555666666666666666666555431 2244445555555555555555555555555443 23445555555555555
Q ss_pred CChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 348 SVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 348 ~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
++.++|++.|... +.. +...+..+...|-+.++..+|...|.+-
T Consensus 446 ~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555543 111 3344555555555555555555444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-10 Score=101.06 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=190.6
Q ss_pred CCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHH
Q 043608 114 NYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNV 193 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 193 (579)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+....++..+.-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999999887776533 34456666777788899999999999988876667778888888889999999988877
Q ss_pred hcccC---CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 043608 194 FSGIA---RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNAL 270 (579)
Q Consensus 194 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 270 (579)
..+.. .+++.......++|.+.|++.....++..|.+.|.+.+.... .-...+|+.+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------------~le~~a~~gl 235 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------------RLEQQAWEGL 235 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------------HHHHHHHHHH
Confidence 76544 457888899999999999999999999999999973221110 1122345556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
++-....+..+.-...++..... .+-++..-..++.-+.+.|+.+.|.++..+..+++..|.. ...-.+.+-++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCc
Confidence 65555555555555555554432 3344455555666666677777777777777766665541 111122334444
Q ss_pred HHHHHHHHH----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 351 CNALLVFKE----LGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 351 ~~a~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
+.-++..+. .+..| ..+.++...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 433333332 23333 55666666777777777777777755543 66777777777777777777777776666
Q ss_pred HHH
Q 043608 427 ITK 429 (579)
Q Consensus 427 ~~~ 429 (579)
...
T Consensus 387 ~L~ 389 (400)
T COG3071 387 ALL 389 (400)
T ss_pred HHH
Confidence 553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=114.12 Aligned_cols=284 Identities=13% Similarity=0.035 Sum_probs=198.4
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhC--CCCChhHHHHHHHHHHccCChhh-
Q 043608 12 QNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSK--CQPDVVLQNHILNMYGKCGSLED- 88 (579)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~- 88 (579)
.-+.++|+..|+++... +.........+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+-.+-+.-.+.-
T Consensus 332 ~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 34677888888885542 44444566778888889999999999999888654 12255677777665543322222
Q ss_pred HHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 89 ARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 89 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
|..+. .+.+..+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+.+-+....++|.|...|+..+...
T Consensus 410 aq~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22222 223456788999999999999999999999998875 44 56777777777888888888888888776532
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSV 244 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~ 244 (579)
+.+-..|-.+.-.|.+.++++.|+-.|++..+- +.+....+...+-+.|+.++|++++++.....
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------------ 553 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------------ 553 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------------
Confidence 123345556677888888888888888877653 55666667777888888888888888887664
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHH
Q 043608 245 FSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHS 323 (579)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 323 (579)
+.|+..--..+..+...++.++|+..++++++. .|+.. .|..+...|.+.|+.+.|..-|.
T Consensus 554 ----------------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 554 ----------------PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred ----------------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 344444445566667778888888888888874 56544 44455567777777777777777
Q ss_pred HHHHcCCC
Q 043608 324 YIIKMGFD 331 (579)
Q Consensus 324 ~~~~~~~~ 331 (579)
.+.+...+
T Consensus 616 ~A~~ldpk 623 (638)
T KOG1126|consen 616 WALDLDPK 623 (638)
T ss_pred HHhcCCCc
Confidence 66665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-09 Score=97.84 Aligned_cols=215 Identities=12% Similarity=0.024 Sum_probs=153.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLV 356 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (579)
.|+.-.|..-|+........++. .|-.+...|....+.++....|....+.+ +-++.+|-.-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 46666666666666654322222 14445556667777777777777777665 33667777777778888888888888
Q ss_pred HHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-
Q 043608 357 FKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA- 433 (579)
Q Consensus 357 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 433 (579)
|++. ...| ++..|-.+.-+..+.+.+++++..|++..++ ++.-+..|+.....+...++++.|.+.++..++....
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 8875 3333 5556777777777888999999999998877 4555778888889999999999999999888754322
Q ss_pred ------CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 434 ------FDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 434 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+.+.+--.++..- -.+++.+|..++.+..+-| ...|..|...-.+.|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1222222333222 3489999999999988644 45688888899999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-11 Score=113.25 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=206.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHH-HH
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF--DSNVPVCNAILTMYAKCSVLCN-AL 354 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-a~ 354 (579)
-+..+|+..|..+... +.-+......+-.+|...++++++..+|+.+.+... .-+..+|.+.+.-+-+.-.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885544 333445666777899999999999999999987632 2356677777655433222111 11
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKP-DHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
.+.+. .+-.+.+|.++..+|..+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+....
T Consensus 412 ~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 412 DLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 22222 2236779999999999999999999999998875 45 567888888888888899999999987664
Q ss_pred CchhHHHH---HHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 434 FDVFVMNG---LMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 434 ~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.++..|++ +.-.|.|.++++.|+-.|+++.+ .+.+....+...+-+.|+.|+|+.+++++.... +.|+.+--.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 45666665 56779999999999999999986 345566667778889999999999999998764 234545445
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
-+..+...+++++|+..+++++. +.| +...+..+++.|.+.|+.+.|+.-|.=+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 66777888999999999999985 355 4557888999999999999998766544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-10 Score=101.20 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=212.7
Q ss_pred CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHH
Q 043608 295 LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSI 372 (579)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l 372 (579)
..-+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++ ..+....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34455555556667778899999999999998875 556666666677888888766655555554 222356789888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
.--|...|+.++|.+.|.+.... .|. ...|..+..+++..+..++|...+...-+.-...... +--+.--|.+.++
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhcc
Confidence 88888999999999999987654 333 3467888899999999999999888776542221111 1223445888999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC--CCC---C-ChhHHHHHHHHhhccCchHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL--GVS---P-NLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
++-|.++|..... .|+...+-+.-.....+.+.+|..+|+..... .+. + -..+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998873 56777777777777889999999999987721 011 1 2447889999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 523 HLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
..+++... -.+.+..++.++.-.|...|+++.|.+.|.+. ..+||.++-.++|+
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999986 45667889999999999999999999999988 67899988887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-09 Score=90.95 Aligned_cols=448 Identities=12% Similarity=0.075 Sum_probs=257.2
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
+.-+....++..|+.+++.-... +-.....+-..+...+.+.|++++|...+.-+.... .++...+..+..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45567788999999999976643 322222344445556778999999999999888755 6677777777777777899
Q ss_pred hhhHHHhhcCCCCCCeeehh-HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHH
Q 043608 86 LEDARMGFDKMPQRNVVSWT-AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIK 164 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (579)
+.+|..+-...++ ....+ .|.....+.++-++...+-+.+... ..--.+|.......-.+++|++++.....
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998877654 23333 3444455667766665555554332 12233444444445568899999998876
Q ss_pred hccCCChhHHHH-HHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 165 SEHGSHLIAQNA-LIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 165 ~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+ |.....|. +.-+|.+..-++-+.++++--.+ .++.+-|..+....+.=+-..|.+-.+++.+.+- + .
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~-~--- 252 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-Q-E--- 252 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-c-c---
Confidence 54 23223332 44567788888877777654432 2445556555555554333444444555544431 0 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH-----SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 315 (579)
| ..+.-++++ +.-+.|++++-.+.+. -|.. -..++-.+.+.+++
T Consensus 253 --------------------------~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 253 --------------------------Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDV 301 (557)
T ss_pred --------------------------c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccH
Confidence 0 011111111 2224444444333321 1211 11223334455555
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHH-----HHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHH
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTM-----YAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
++|..+.+++.-. .|...+...++.+ ......+.-|...|+-.|.. .++..-..+.+.+.-..++++++
T Consensus 302 qeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 302 QEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred HHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5555444432210 1111111111111 11112244455555555332 12333455666666667788888
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD 466 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 466 (579)
..++....--...|... ..+.++.+..|++.+|+++|-.+....++....-...|.++|.+++.++-|+.++-++..|.
T Consensus 380 ~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred HHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 88877766533333333 34677888888888888888777655555444445567788889999999998888877654
Q ss_pred h-hh-HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 467 V-VS-WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 467 ~-~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
. .+ ...+...|-+.+.+--|.+.|+.+... .|++..|
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 3 22 334456677888888888888887765 4555555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-08 Score=93.97 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAACLQ--HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+..+.+.++...++.......+.+++....+ ...+.++..++....+....-........+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455566665555443223344444444322 22466777777776665322223455566677788899999999888
Q ss_pred --------HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHH----HHHHHhcCCcHHHH
Q 043608 426 --------YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------PDVVSWSSL----ILGYAQFGCGDEAL 487 (579)
Q Consensus 426 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l----~~~~~~~~~~~~a~ 487 (579)
.+.+.+. .+.+...++..+.+.++-+.|..++.+..+ +......++ ...-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 4444433 445666777778888887777777776652 333333333 33345779999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 488 KLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 488 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
.+++++.+.+ ++|..+...++.+|++. |.+.|..+-..+
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999863 66788888888888874 667777665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-08 Score=92.69 Aligned_cols=446 Identities=12% Similarity=0.023 Sum_probs=261.3
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
+...|++++|.+...++...+ +-+...+..=+-++.+.+.+++|+.+.+.-.. ...+..-+-.=.-+..+.++.++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHH
Confidence 445566666666666666543 33344455555555566666666643322110 000000001112334467888888
Q ss_pred HHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 043608 191 RNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNAL 270 (579)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 270 (579)
+..++...+.+..+-..-.+.+.+.|++++|+++|+.+.+.+....+......++.+.....-...+..+.....+|..+
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 88888665556666777778888999999999999999888764555666666666655543335555554445566554
Q ss_pred H---HHHHcCCChHHHHHHHHHHHhCC-------------CCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCCCCC
Q 043608 271 I---AGVASHSNANEAMSLFSEMRDRE-------------LLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGFDSN 333 (579)
Q Consensus 271 i---~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (579)
. ..+...|++.+|+++++...+-| +.-+..+. ..+.-.+-..|+-++|..++...++.+.. |
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-D 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-C
Confidence 4 45567899999999998883211 11111111 22333456789999999999999988743 3
Q ss_pred chhHHHHHH---HHHhcCCh-H-HHHHHHHHcCCC-------------CChhhHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 334 VPVCNAILT---MYAKCSVL-C-NALLVFKELGKN-------------ADSVSWN-SIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 334 ~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~-------------~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
........+ +.....++ + .++..++..... -..+..| .++..|. +..+.+.++-....
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp- 334 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP- 334 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC-
Confidence 322222221 22221111 1 223333332111 0111111 2222222 22233333222211
Q ss_pred CCCCCcHhHHHHHHHHHhcc--CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh--------hCCC
Q 043608 395 SQIKPDHITFNDVMGACAKM--ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN--------FMEN 464 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~ 464 (579)
+..| ...+..++..+.+. ..+..+.+++....+....-...+.-.+++.....|+++.|.+++. .+.+
T Consensus 335 -~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 -GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred -ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 1122 23444555444332 2466777777776665444445666677888899999999999998 3332
Q ss_pred --CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCChh----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 --PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG--VSPNLV----TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
..+.+...+...+.+.++.+.|..++.+....- -.+... ++.-++..-.+.|.-++|...++++.+ -.++
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~ 490 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPN 490 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCc
Confidence 334555667777888888888888887766421 012222 344444445577999999999999997 4577
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
|..+...++.+|.+.. .+.|..+-.+++..+
T Consensus 491 d~~~l~~lV~a~~~~d-~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLD-PEKAESLSKKLPPLK 521 (652)
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHhhcCCCcc
Confidence 8889999999998764 899999988885333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=81.16 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH 514 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 514 (579)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=80.10 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc
Q 043608 364 ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK 413 (579)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 413 (579)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-07 Score=93.07 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=122.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
.+..|+.+..+-.+.|...+|.+-|-+ ..|+..|.-++..+.+.|.+++...++...++..-.|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 345678888888888888888776644 2467789999999999999999999998888776665544 57888
Q ss_pred HHHHcCCHHHHHHHHhhCCC-----------------------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 445 IYIKCGSLGSARKLFNFMEN-----------------------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+|++.+++.+-++++..--. .++..|..|...+...|+++.|...-++. -+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999998887766543110 23444555666666666666666554432 24
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
..||.-+-.+|...+.+.-| +|... ++....+-...|+..|...|-+++-..+++.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 55777777777776655443 23322 3344455667778888888888887777664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-08 Score=93.28 Aligned_cols=443 Identities=11% Similarity=0.048 Sum_probs=272.0
Q ss_pred hcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 11 KQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
..+++...+++.+.+... .+-+..|.....-.+...|+.++|......-++.+ ..+.++|..+.-.+-...++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 356777788888877773 44455565555555667788888888888777655 445567777666666667888888
Q ss_pred HhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 91 MGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 91 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
+.|..... .|...|.-+--.-++.++++.....-.++.+.. +-....|.....+.--.|+...|..+++...+...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88877652 344555555544556677777777777766641 22345566777777778888899998888877653
Q ss_pred -CCChhHHHHH------HHHHhcCCCHHHHHHHhcccCCC--cH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 043608 168 -GSHLIAQNAL------IAMYTKFDRILDARNVFSGIARK--DV-TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPN 237 (579)
Q Consensus 168 -~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 237 (579)
.|+...+... .....+.|..+.|.+.+...... |- ..-.+-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------ 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------ 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------
Confidence 4554444332 23455678888888877665543 22 23345566778889999999999999887
Q ss_pred hHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHcC-CChHHHHHHHHHHHhCCCCCChHHHHH-HHHHhhcccc
Q 043608 238 EFIFGSVFSACSNFARILFNEIDSPDLASWNA-LIAGVASH-SNANEAMSLFSEMRDRELLPDGLTVHS-LLCACIGRLT 314 (579)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 314 (579)
.||...|+. +..++.+. +..+....+|....+. .|....... -+.......-
T Consensus 249 -----------------------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 249 -----------------------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh
Confidence 344444444 33444322 2333333555555443 221111111 1111112223
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH----HHHHc-------------CCCCChhhHH--HHHHH
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL----VFKEL-------------GKNADSVSWN--SIIAA 375 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~-------------~~~~~~~~~~--~l~~~ 375 (579)
.+....++....+.|+++ ++..+...|-.-...+-..+ +...+ ..+|....|. .++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 344556666677777654 33333333322221111111 11111 1245665554 46677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
+-+.|+++.|...++...++ .|+.. -|..=.+.+...|++++|..++++..+.+ .+|...-..-.....+.++.++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHH
Confidence 88899999999999988776 56644 34444577888999999999999988765 3455555566777788899999
Q ss_pred HHHHHhhCCCCChh----------hHHHH--HHHHHhcCCcHHHHHHHHHHH
Q 043608 455 ARKLFNFMENPDVV----------SWSSL--ILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 455 A~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~ 494 (579)
|.++.....+.+.. .|-.+ ..+|.+.|++..|++-|....
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 99988877643211 22222 345677777777766555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-08 Score=94.24 Aligned_cols=281 Identities=13% Similarity=0.170 Sum_probs=187.7
Q ss_pred HHHhcCCCHHHHHHHhcccCCC--c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 179 AMYTKFDRILDARNVFSGIARK--D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+++.+++.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----------------------- 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----------------------- 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------
Confidence 3456678888888888665443 3 3455667788888999999999999998885
Q ss_pred hhcCCCCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch-hhHHHHHHHHHHcC
Q 043608 256 FNEIDSPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL-YQGMQVHSYIIKMG 329 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~ 329 (579)
+.|..-|..+..+..- ..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|
T Consensus 69 -----Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 69 -----PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred -----CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3344444445454422 23567778888888765 35555544444333332333 24445666777777
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHc-----------------CCCCChhhH--HHHHHHHHhcCCHHHHHHHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKEL-----------------GKNADSVSW--NSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~ 390 (579)
+++ +++.+-..|.......-..+++... ..+|+...| ..+...|...|++++|++.++
T Consensus 142 vPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 142 VPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred Cch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 543 5666666666554444444444432 122444334 555667788999999999999
Q ss_pred HHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh-
Q 043608 391 RMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV- 468 (579)
Q Consensus 391 ~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 468 (579)
+.++. .|+ +..|..-...+-+.|++.+|.+.++..+..... |..+-+-....+.++|+.++|.+++....+++..
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 98887 455 556777778888999999999999998877643 6667777788888999999999998888765421
Q ss_pred ---------hH--HHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 469 ---------SW--SSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 469 ---------~~--~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.| .....+|.+.|++..|++.|....+
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2335678888888888877666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=94.61 Aligned_cols=193 Identities=14% Similarity=0.056 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 345555566666666666666666665542 22344555566666666677777776666665432 2345555666667
Q ss_pred HHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 447 IKCGSLGSARKLFNFMEN-----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
...|++++|.+.++...+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776653 123455666777788888888888888887753 22455677778888888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888764 2334556666777788888888888887766
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-09 Score=94.57 Aligned_cols=196 Identities=14% Similarity=0.041 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456677778888889999998888875 2222 45677788888889999999999999888764 3355667777888
Q ss_pred HhccCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 486 (579)
+...|++++|.+.++...+... ......+..+..++...|++++|...+++..+ | +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8889999999999998886432 22345667788889999999999999988763 3 456788888999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999886 344566777788888899999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-10 Score=111.06 Aligned_cols=246 Identities=12% Similarity=-0.058 Sum_probs=151.4
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH---------ccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCC
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG---------KCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNY 115 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 115 (579)
.++.++|.+.|++..+.. +.+...+..+..++. ..+++++|...+++..+ | +...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 356788888888888765 444555555554433 22346778888777664 3 4556666767777788
Q ss_pred ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 116 QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 116 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+.+ ...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 8888888888887763 3334566777777888888888888888887765432 2223334444566788888888887
Q ss_pred ccCC---C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 043608 196 GIAR---K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI 271 (579)
Q Consensus 196 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li 271 (579)
+... + +...+..+..++...|+.++|.+.++++.... +.+....+.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----------------------------~~~~~~~~~l~ 482 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE----------------------------ITGLIAVNLLY 482 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----------------------------chhHHHHHHHH
Confidence 6542 2 34556677777888888888888887765442 22334445555
Q ss_pred HHHHcCCChHHHHHHHHHHHhC-CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 272 AGVASHSNANEAMSLFSEMRDR-ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
..+...| ++|...++.+.+. ...|.......++.+ -.|+.+.+... +.+.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHH-HHhhccc
Confidence 5666666 4666666665543 223333333333333 33444444433 5555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-07 Score=87.91 Aligned_cols=450 Identities=11% Similarity=0.029 Sum_probs=258.1
Q ss_pred HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhH
Q 043608 44 ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 120 (579)
-|...+++...+...+.+++.. +....+.....-.+...|+-++|.+....-.+ .+.+.|+.+.-.+-...++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 3556678888888888888743 44555555444555678999999998877665 4567899988888888999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC-
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR- 199 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 199 (579)
+++|+.....+ +-|...+.-+.-.-++.|+++.....-.+..+.. +.....|..+..++.-.|+...|..++++..+
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998864 3344455444444445566666655555555432 22344556666666667777777666655432
Q ss_pred ----CcHhhHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhH-H
Q 043608 200 ----KDVTSWGSM------IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASW-N 268 (579)
Q Consensus 200 ----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 268 (579)
++...|... .....+.|.+++|++.+..-...- -|-..+ .
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-----------------------------~Dkla~~e 223 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-----------------------------VDKLAFEE 223 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-----------------------------HHHHHHhh
Confidence 222222221 233455666666666665543221 122222 2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhh-ccc-chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACI-GRL-TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
.-...+.+.++.++|..++..+... .||..-|...+..+. +.. ..+....+|....+.- |-...-..+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhC
Confidence 3446677889999999999999876 688777766655444 232 2333335555544331 111110001000111
Q ss_pred cCChHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCcH--hHHHHHHH
Q 043608 347 CSVLCNA-LLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRML----ASQ----------IKPDH--ITFNDVMG 409 (579)
Q Consensus 347 ~~~~~~a-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~----------~~p~~--~~~~~l~~ 409 (579)
..++... -+++...-.+.=+..+..+.+.|-.....+-..++.-.+. ..| -+|.. .|+..++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 1222222 2222222111011223333333322221111111111111 111 13443 34556778
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFD-VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 485 (579)
.+-..|+++.|..+++..... .|+ +..|..=.+.+...|++++|...+++..+ +|...-.--..-..+.++.++
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 888999999999999887754 344 33444445778899999999999998875 554444445556678899999
Q ss_pred HHHHHHHHHhCCCCC-----Chh-HHHHH--HHHhhccCchHHHHHHHHHHHHh
Q 043608 486 ALKLFTRMRSLGVSP-----NLV-TLVGV--LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 486 a~~~~~~m~~~~~~p-----~~~-~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
|.++.......|... +.. .|-.+ ..+|.++|++..|++-|..+.+.
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 999998888776411 111 22222 23577888888888766666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=83.23 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=172.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
+...+.-+|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|++..+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 35567778999999999999999998873 334668888889999999999999999999876533 6788899999999
Q ss_pred HcCCHHHHHHHHhhCCC-CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHH
Q 043608 448 KCGSLGSARKLFNFMEN-PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
..|++++|...|+.... |+ ..+|..+..+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998874 43 4678888888899999999999999999863 223567888999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 523 HLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
.+++..... ..++..+....++.-.+.||.+.|.++=.++ ..-|.+..|.+.+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f~~ 248 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTFLA 248 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhHhc
Confidence 999999875 3489999999999999999999999887777 34577777766553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=93.39 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHH-HHHHHHHhccC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITF-NDVMGACAKMA 415 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~ 415 (579)
+.+.++|.+.|.+.+|.+.++.. ...|.+.+|-.+-+.|.+.+++..|+.++.+-.+. .|-.+|| ..+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 45667777888888888777764 55667777877888888888888888888777665 3444443 34556667777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 492 (579)
+.++|.++++...+.. +.++....++...|.-.++.+.|++++.++.+ .++..|+.+.-+|.-.+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 7888888887777653 23555556666667777788888888877764 5666777777777777888888888888
Q ss_pred HHhCCCCCCh--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 493 MRSLGVSPNL--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 493 m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....--.|+. ..|-.+.......||+..|.+-|+-.... -....+.++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 7765444543 35666777777788888888888877642 2334556777777777888888888888776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-06 Score=83.54 Aligned_cols=435 Identities=15% Similarity=0.149 Sum_probs=211.4
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHC--CCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQS--GVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (579)
+..+.+.|.++|-..+|++.+..+..- .+..+...=-..+-.+...-.++.+.++++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 455666677788888888776665321 000000000111222333445777888888888877777776666666666
Q ss_pred hcCCCHHHHHHHhcccCC---------------CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----------
Q 043608 182 TKFDRILDARNVFSGIAR---------------KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP---------- 236 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p---------- 236 (579)
...=..+..+++|+.... .|+...--.|.+.++.|++.+..++.++- +++.|
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres---n~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES---NCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc---ccCCHHHHHHHHHhc
Confidence 666666667777766543 24555566778888888887777766542 11111
Q ss_pred ------------ChHhH--HHHHHHHHHHHH----HHhhcCCC---C-------Ch----hh-------------HHHHH
Q 043608 237 ------------NEFIF--GSVFSACSNFAR----ILFNEIDS---P-------DL----AS-------------WNALI 271 (579)
Q Consensus 237 ------------~~~~~--~~~l~~~~~~~~----~~~~~~~~---~-------~~----~~-------------~~~li 271 (579)
|...+ ..++-.+.+... ...++..+ | |. .. -+.|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 11111 111111111111 11111111 0 00 00 11122
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc-hhhHHH---HH-----HHH-HHc-----------CC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT-LYQGMQ---VH-----SYI-IKM-----------GF 330 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~---~~-----~~~-~~~-----------~~ 330 (579)
.-.-+.++..--..+++.....| .-|..+++.+...|...++ ++.-++ .| ... .++ |.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 22233344444455555555555 3466677777766654432 221110 01 110 110 10
Q ss_pred --------CCCchhHHHHHHHHHhcCChH---HHH--------HHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHH
Q 043608 331 --------DSNVPVCNAILTMYAKCSVLC---NAL--------LVFKEL-----GKNADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 331 --------~~~~~~~~~l~~~~~~~~~~~---~a~--------~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
......|....+.+.+..|.+ +++ .+.+.. +...|+...+.-+.++...+-..+..
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 001112222333333333322 111 111221 33335555566667777777777777
Q ss_pred HHHHHHHHCCC--CCcHhHHHHHH---------------------------HHHhccCChHHHHHHHHHHHHcCCCCchh
Q 043608 387 RLFSRMLASQI--KPDHITFNDVM---------------------------GACAKMASLEMVTQLHCYITKTGLAFDVF 437 (579)
Q Consensus 387 ~~~~~m~~~~~--~p~~~~~~~l~---------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 437 (579)
++++++.-..- .-+...-+.++ ..+...+-+++|..+|++. ..+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHH
Confidence 77776643221 11111111121 1222333344444444432 12222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
..+.|++ ..+.+++|.++-++..+| ..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-+++.+.+.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 3333322 234455555555544444 35777777777777777777655332 355677777788888888
Q ss_pred hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 518 VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+++-.+++...+++ .-.|..++ .|+-+|++.|++.+-.+++
T Consensus 1149 ~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 88877777766665 44444443 5667777777766665554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-07 Score=87.47 Aligned_cols=369 Identities=13% Similarity=0.104 Sum_probs=210.5
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+ ...++-.|.+|.+.|+|++|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHHH
Confidence 445566777777777666542 2334566667777777777777777643 22344566777777777777
Q ss_pred HHHhcccCCC--cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHH
Q 043608 191 RNVFSGIARK--DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWN 268 (579)
Q Consensus 191 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (579)
.++-++...| ....|-+-..-+-+.|++.+|.+++-.+. .|+.
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-------------------------------~p~~---- 855 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-------------------------------EPDK---- 855 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-------------------------------CchH----
Confidence 7777766655 33456555566666777777766654332 3432
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
.|..|-+.|..+..+++...-... .-..|...+..-+-..|++..|.+-|-+.. -|.+.+++|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhh
Confidence 466777888888888777654322 123445555666677788888876654433 2566778888888
Q ss_pred ChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 349 VLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
-+++|.++-+.-+-. |..-- +.-.+++.=.-+.|.+++++. | ....-+...+..+.++-|.++-+...
T Consensus 923 lw~dayriaktegg~-n~~k~--v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA-NAEKH--VAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred hHHHHHHHHhccccc-cHHHH--HHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhh
Confidence 888888887765433 32222 222233333345666666542 1 12223344566667777776655544
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh--hhHHHHH-----HHHHhcC-CcHHHHHHHHH--------
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDV--VSWSSLI-----LGYAQFG-CGDEALKLFTR-------- 492 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~-----~~~~~~~-~~~~a~~~~~~-------- 492 (579)
+... |.+ .-.+...+...|++++|-+.+-+..+.+. .+|...+ .-+.+.| ++++|..+|-.
T Consensus 991 k~k~-~~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ae 1067 (1636)
T KOG3616|consen 991 KDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAE 1067 (1636)
T ss_pred hccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHH
Confidence 4321 222 22233345677888888777766654322 2222111 1123333 34444444311
Q ss_pred -HHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 493 -MRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 493 -m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+. ..|+ +..|..-.++....|++.+|..++-+.. +|+. .++.|...+-|..|+++-+..
T Consensus 1068 rvae~-h~~~~l~dv~tgqar~aiee~d~~kae~fllran-----kp~i-----~l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1068 RVAEA-HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN-----KPDI-----ALNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred HHHHh-hChhhhHHHHhhhhhccccccchhhhhhheeecC-----CCch-----HHHHHHHhccChHHHHHHHhh
Confidence 1111 1233 2345555666677778877777654332 4443 456677777888887776655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-08 Score=94.32 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSL 286 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 286 (579)
.+...|...+++++|..+|+++...- +..+-...+.-..+++.|..+|.+.|++++|...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~--------------------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR--------------------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH--------------------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 46667788888888888888876431 1111111123345677888889999999988888
Q ss_pred HHHHH
Q 043608 287 FSEMR 291 (579)
Q Consensus 287 ~~~m~ 291 (579)
++...
T Consensus 306 ~e~Al 310 (508)
T KOG1840|consen 306 CERAL 310 (508)
T ss_pred HHHHH
Confidence 87654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-08 Score=95.28 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C--CC-C
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN-------PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----V--SP-N 501 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~--~p-~ 501 (579)
+.+...++..+++++|..+++...+ ++ ..+++.|...|.+.|++++|.+++++++... - .+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 3444445555555555555443331 11 2345666666666666666666666654321 1 11 1
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCC---C-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEY-GIIP---T-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...++.+...|.+.+.+++|.++|.+...-. -+.| + ..+|..|...|.+.|++++|.++.++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3355666666666666666666665543210 1112 1 235666666677777777776666555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-06 Score=74.70 Aligned_cols=415 Identities=11% Similarity=0.009 Sum_probs=240.5
Q ss_pred HhhcchhhhhhhhHHHHHHHhC-------------------CCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeeh
Q 043608 44 ACSSLRSLQLGRKVHDHILLSK-------------------CQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSW 104 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 104 (579)
...+.+.+..|.+-|....... ...+...-...+.+|-..++-+.|...+.+.+..-...-
T Consensus 52 ~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~ 131 (564)
T KOG1174|consen 52 ANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPR 131 (564)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchh
Confidence 3345566777777776655322 122344556677788888888899988888875333333
Q ss_pred hHH-hhhhhcCC-ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHh
Q 043608 105 TAM-IAGCSQNY-QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182 (579)
Q Consensus 105 ~~l-~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (579)
+.| +.-+-+.| +-.++.--+...+..- + .-...|.+..+.+ ...+...-..|-....+|........+.+++
T Consensus 132 inlMla~l~~~g~r~~~~vl~ykevvrec-p----~aL~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~A 205 (564)
T KOG1174|consen 132 INLMLARLQHHGSRHKEAVLAYKEVIREC-P----MALQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALA 205 (564)
T ss_pred HHHHHHHHHhccccccHHHHhhhHHHHhc-c----hHHHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHH
Confidence 333 33332222 2222222222221110 0 0011111111110 0001111111222223344444444444433
Q ss_pred c--CCCHHHHHHHhccc-----CCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 183 K--FDRILDARNVFSGI-----ARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 183 ~--~g~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
. .++-..+...+-.. ...|+.....+...+...|+.++|...|+...-...
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp---------------------- 263 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP---------------------- 263 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh----------------------
Confidence 3 33333333333222 123677777888888888888888888887764421
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCch
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVP 335 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (579)
-++.....-.-.+.+.|+.+....+...+.... .-+...|..-.......++++.|+.+-++.++.+ +.+..
T Consensus 264 ------y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 264 ------DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred ------hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 111112222233456677777777776665431 1122222222333445677888888877777665 22444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH-HHHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM-GACA 412 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~ 412 (579)
.+-.-...+...+++++|.-.|+.. .. +-+...|.-++.+|...|.+.+|.-+-+...+. ++.+..+...+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 5555556778889999999888876 22 236778999999999999999988777765544 345566665552 3332
Q ss_pred -ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 413 -KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPDVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 413 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
...--++|..++++..+..+. -....+.+.+.+...|..+.+..+++... .||....+.|...+...+.+++|.+.
T Consensus 415 ~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred cCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 333457788888776654322 23456677788888999999999998876 48888899999999999999999999
Q ss_pred HHHHHhC
Q 043608 490 FTRMRSL 496 (579)
Q Consensus 490 ~~~m~~~ 496 (579)
|......
T Consensus 494 y~~ALr~ 500 (564)
T KOG1174|consen 494 YYKALRQ 500 (564)
T ss_pred HHHHHhc
Confidence 9888874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-08 Score=98.25 Aligned_cols=209 Identities=11% Similarity=-0.075 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++|...+++. ...| +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3467777777665 2222 55567777777777888888888888887763 3335566677777888888888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+..+.+..+ ...+..++..+...|++++|...+++..+ |+ ...+..+..++...|++++|...++++... .|+
T Consensus 397 ~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~ 473 (553)
T PRK12370 397 ECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT 473 (553)
T ss_pred HHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence 887765432 22233344445667888888888877642 33 344666777788888889998888887654 444
Q ss_pred hh-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 502 LV-TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 502 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
.. ..+.+...+...| +.|...++.+.+.....+..... +-..|.-.|+.+.+..+ +++.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 33 4445555666666 47777777777654444433333 44445556776777666 7774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-08 Score=92.58 Aligned_cols=285 Identities=12% Similarity=0.067 Sum_probs=198.1
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc---
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC--- 347 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 347 (579)
..+...|++++|++.++.-... .+|. .........+.+.|+.++|..++..+++.+. .+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4567889999999999875543 4554 4455667788899999999999999999973 3555566666665332
Q ss_pred --CChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 043608 348 --SVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAE-ELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 348 --~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
.+.+...++++++... |.......+.-.+.....+. .+...+..+...|+++ +|..+-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2467778888877222 33333333322222222232 3555667777888664 455555556655555556666
Q ss_pred HHHHHHc----C----------CCCch--hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcH
Q 043608 424 HCYITKT----G----------LAFDV--FVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 424 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~ 484 (579)
+...... + -.|+. .++.-+.+.|-..|++++|++++++..+ |. +..|..-.+.+...|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 6554421 1 12333 3456678889999999999999998874 54 556777888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh--------HHHHHHHHhcCChhH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC--------SCVVDLLARAGCVHE 556 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~ 556 (579)
+|.+.++..+.... -|...=+-.+..+.+.|++++|.+++..+.+. +..|....+ .....+|.+.|++..
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999998652 35556666777788999999999999999876 544433222 445788999999999
Q ss_pred HHHHHHhh
Q 043608 557 AEDFINQM 564 (579)
Q Consensus 557 A~~~~~~~ 564 (579)
|+..+..+
T Consensus 324 ALk~~~~v 331 (517)
T PF12569_consen 324 ALKRFHAV 331 (517)
T ss_pred HHHHHHHH
Confidence 99877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-06 Score=85.27 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=129.5
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhC---------CCCChhHHHHHHHH
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSK---------CQPDVVLQNHILNM 79 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~ 79 (579)
|..-|+.+.|.+-.+.+.. ...|..+.+.|.+.++++-|.-++-.|.... ..++ .+-....-.
T Consensus 738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4556777777777665543 4577777777877777776666555443211 1221 111122222
Q ss_pred HHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 80 YGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
-...|.+++|+.+|.+.++ |..|=..|-..|.|++|.++-+.--. +. =..||..-..-+-..++.+.|+++|
T Consensus 810 AieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 2456888888888877665 44455556667788888777654221 11 1234555555555666777777766
Q ss_pred HHHHHhc-------------------cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHH
Q 043608 160 AHVIKSE-------------------HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELE 220 (579)
Q Consensus 160 ~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (579)
++.-... -..|...|.-....+-..|+++.|+.++... ..|-++++..|-.|+.++
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchH
Confidence 5431110 0112222333333333445555555555432 234445555555555555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 221 ALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 221 a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
|-++-++ ..|..+...+.+.|-..|++.+|..+|...+
T Consensus 957 Aa~iA~e---------------------------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 957 AARIAEE---------------------------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHh---------------------------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5555444 4566667778888988999999998887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-09 Score=88.44 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043608 206 GSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMS 285 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 285 (579)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-----------------------------~~~~dTfllLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-----------------------------FPHPDTFLLLSKVYQRIDQPERALL 277 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-----------------------------CCchhHHHHHHHHHHHhccHHHHHH
Confidence 56777888888888888888777665 5666777777788888888888888
Q ss_pred HHHHHHhCCCCCChHHHH-HHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCC
Q 043608 286 LFSEMRDRELLPDGLTVH-SLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNA 364 (579)
Q Consensus 286 ~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (579)
++.+-.+. .|-..||. -+.+.+-..++.+.+.++|+...+.. +.+.....++...|.-.++++.|+..+
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryY------- 347 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYY------- 347 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHH-------
Confidence 88776654 55555543 33344455566666666666665543 223333334444444444455555544
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--VFVMNGL 442 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 442 (579)
+++.+.|+. +...|..+.-+|...+++|.++..|.+....--.|+ ..+|-.+
T Consensus 348 -------------------------RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 348 -------------------------RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred -------------------------HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 444444433 333444444444444444444444444443222222 2334444
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.......|++.-|.+.|+-... .+...++.|.-.-.+.|++++|..++....+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 4444455555555555554442 2233455554444555666666666555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-06 Score=81.44 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=136.2
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCCh
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM-GFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
--|...++.+.|.+..++..+.+-.-+...+..+.-.+...+++..|+.+.+...+. |. |......-++.-...++.
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDR 563 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccH
Confidence 345556788888888888888766667777777777788888888888888766543 21 111111122222334555
Q ss_pred HHHHHHHHHc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHhHHHHHHHHHhccC---ChHHHH
Q 043608 351 CNALLVFKEL----GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS--QIKPDHITFNDVMGACAKMA---SLEMVT 421 (579)
Q Consensus 351 ~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~---~~~~a~ 421 (579)
++++.....+ ...+.+ -..++-....+....+.-. ...-...++..+..-....+ ..+..
T Consensus 564 e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 5555443322 000000 0011111111111111100 00111112222221111100 00000
Q ss_pred HHHHHHHHcCCCC--c------hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 422 QLHCYITKTGLAF--D------VFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 422 ~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
+.+....| + ...+......+.+.+..++|...+.+..+.+ ...|......+...|++++|.+.|
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 11111111 1 1233344455666666666666666655422 233444445556667777777777
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHH--HHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 491 TRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLH--LYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 491 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..... +.|+ ......+...+.+.|+..-|.. ++..+.+. + +-+.+.|..|...+.+.|+.++|.+.|.-.
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-D-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-C-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 76665 3454 3466667777777776655555 66666643 1 224556777777777777777777777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-06 Score=83.53 Aligned_cols=348 Identities=12% Similarity=0.095 Sum_probs=198.3
Q ss_pred cCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-cHhhHHHHHHHHHhcCChHHHHHHH
Q 043608 147 SGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-DVTSWGSMIAAFSKLGYELEALCHF 225 (579)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (579)
...|.+++|+.+|++-++.. .|-..|-..|.+++|.++-+.=.+- --.+|......+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 35567777777777665543 2333455667777777765442221 1235555666666677777777777
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 043608 226 NEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL 305 (579)
Q Consensus 226 ~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 305 (579)
++.. ....-...+|.-.....+.+.+++. |...|.-....+-..|+.+.|+.+|...++ |..+
T Consensus 882 EK~~------~hafev~rmL~e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 882 EKAG------VHAFEVFRMLKEYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HhcC------ChHHHHHHHHHhChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 6542 1122222233332222333333333 335555566666778999999999987765 5567
Q ss_pred HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh-------
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ------- 378 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~------- 378 (579)
++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|...|.+.. ++...|..|-.
T Consensus 945 VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhcCHHHHH
Confidence 77778889998888876542 2 56667778888999999999988887641 22222222221
Q ss_pred ------cC--CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHH---------HHHH-HcCCCCchhHHH
Q 043608 379 ------HN--QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLH---------CYIT-KTGLAFDVFVMN 440 (579)
Q Consensus 379 ------~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~-~~~~~~~~~~~~ 440 (579)
.| +.-.|-..|++. |.. +...+..|-+.|.+.+|+++- +.+. +.....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 11 222233333332 111 122233455666666665541 1111 233445677777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh-CCCCCC----hhHHHHHHHHhhcc
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS-LGVSPN----LVTLVGVLTACSHV 515 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~----~~~~~~l~~~~~~~ 515 (579)
.-.+.++...++++|..++...++ |.-.+. +|+..+..-..++-+.|.- ++-.|+ ...+..+...|.++
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~-----~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE-----FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 777888888888888887765432 222222 3444444444444444431 111233 23567788889999
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhH
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (579)
|++..|.+-|.+.-.+ ..-++++.+.||.++
T Consensus 1159 G~Yh~AtKKfTQAGdK----------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAGDK----------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cchHHHHHHHhhhhhH----------HHHHHHHHhcCCcce
Confidence 9999888877765432 124566667776553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-07 Score=77.68 Aligned_cols=418 Identities=13% Similarity=0.022 Sum_probs=231.7
Q ss_pred ehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHH-HHHHH
Q 043608 103 SWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNA-LIAMY 181 (579)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 181 (579)
-+++.+..+.+..+++.|++++..-.+.. +.+....+.+..+|....++..|...++++-... |...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 36667777778888888888888877763 2256667777778888888888888888876643 22222211 23445
Q ss_pred hcCCCHHHHHHHhcccCCCc-HhhHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhc
Q 043608 182 TKFDRILDARNVFSGIARKD-VTSWGSMIA--AFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNE 258 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 258 (579)
.+.+.+.+|+++...|.+.+ ...-..-+. .....+++..+..++++...
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------------- 140 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------------- 140 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----------------------------
Confidence 56677777777777776531 111111111 22345666666666555432
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHH
Q 043608 259 IDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN 338 (579)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (579)
+.+..+.+.......+.|+++.|.+-|+...+-|---....|+..+ +..+.++.+.|.+...+++++|++..+..-.
T Consensus 141 --en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 141 --ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred --CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 2344455555566778999999999999887764333345555444 4567889999999999999998764443210
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKN------ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGAC 411 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~ 411 (579)
|...+... .+.++.+ .=+..+|.-...+.+.|+++.|.+-+-.|.-+. ...|+.|...+.-.-
T Consensus 218 ---------Gm~tegiD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 218 ---------GMTTEGID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred ---------cceeccCc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 00000000 0000000 011223433444567788888888777774322 344566655443221
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHH-hcCCcHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVSWSSLILGYA-QFGCGDE 485 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~-~~~~~~~ 485 (579)
..+++....+-+..+...+. ....+|..++-.||+..-++-|-.++.+-.. -+...|+. +.++. ..-..++
T Consensus 288 -~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEe 364 (459)
T KOG4340|consen 288 -MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEE 364 (459)
T ss_pred -ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHH
Confidence 23344445555555555543 4567888888889998888888888776543 23333433 33333 3345666
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH---HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE---EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
|.+-++.+... +.-.......-+.--...++-. .+++-+++..+. -..+.-.-.+.|++..|+..+.++|.
T Consensus 365 a~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----YLPVlMa~AkiyW~~~Dy~~vEk~Fr 438 (459)
T KOG4340|consen 365 AFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----YLPVLMAQAKIYWNLEDYPMVEKIFR 438 (459)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHH
Confidence 66665554332 0000011111111111111111 222222222221 11122334566788899999999987
Q ss_pred hh-cCCCChhHh
Q 043608 563 QM-ACDADIVVW 573 (579)
Q Consensus 563 ~~-~~~~~~~~~ 573 (579)
.- .+-.+..+|
T Consensus 439 ~SvefC~ehd~W 450 (459)
T KOG4340|consen 439 KSVEFCNDHDVW 450 (459)
T ss_pred HHHhhhccccee
Confidence 66 344455555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-06 Score=82.60 Aligned_cols=422 Identities=13% Similarity=0.064 Sum_probs=253.4
Q ss_pred CCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCccc-HH
Q 043608 65 KCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFT-FG 140 (579)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~ 140 (579)
.+..++..|..+.-++.++|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++......-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3566888888888888899999999999988774 3445688888888888888899999888765533344333 33
Q ss_pred HHHHHhc-CCCcchhHHHHHHHHHHh--cc--CCChhHHHHHHHHHhcCC-----------CHHHHHHHhcccCCC---c
Q 043608 141 SIIKACS-GLGSVCLGRQLHAHVIKS--EH--GSHLIAQNALIAMYTKFD-----------RILDARNVFSGIARK---D 201 (579)
Q Consensus 141 ~li~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~---~ 201 (579)
..-+.|. +.+..++++.+..+.... +. ......|..+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334443 557777888777777662 11 112233333333333211 122344555544322 3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
+.+.--+.--|+..++++.|++..++..+.+. .-+...|..+.-.+...+++.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~---------------------------~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNR---------------------------GDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC---------------------------CccHHHHHHHHHHHhhhhhhH
Confidence 33333334446667788888888888877754 678889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 282 EAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMG-FDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
+|+.+.+...+. .|+.. ....-++.-...++.+++......+...= -.+. ....++-....+....
T Consensus 531 ~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 531 EALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhhhhhhhhcc
Confidence 999999877653 22211 01111111122455555554444433210 0000 0011112222233322
Q ss_pred cCC---C-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--------hHHHHHHHHHhccCChHHHHHHHHH
Q 043608 360 LGK---N-AD-SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH--------ITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 360 ~~~---~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++. . .+ +.++..+..-....+ +.+..-.. |....+.|+. ..|......+.+.+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 211 1 11 122222222221111 11110000 2222222221 2344555667777888888877777
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcHHHHH--HHHHHHhCCCCCC
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPD-VVSWSSLILGYAQFGCGDEALK--LFTRMRSLGVSPN 501 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~--~~~~m~~~~~~p~ 501 (579)
..+.. ......|......+...|+.++|.+.|.... +|+ +.+..++...+.+.|+..-|.. ++..+.+.+ +.+
T Consensus 676 a~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 676 ASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred HHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 66543 3466777777788888999999999998776 454 5667888889999998887777 899998865 346
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|-.+...+-+.|+.++|.+.|.....
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 77899999999999999999999988764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-06 Score=73.22 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=188.5
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHH-HHHHHH
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNH-ILNMYG 81 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 81 (579)
.+++..+.+..++.+|++++..-.++ .+.+...+..|.-.|-...++..|-.+++++.... |...-|.. -.+.+-
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 45677778888888888888766654 33355566666667777888888888888876543 33333321 124444
Q ss_pred ccCChhhHHHhhcCCCC-CCeeehhHHhhh--hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHH
Q 043608 82 KCGSLEDARMGFDKMPQ-RNVVSWTAMIAG--CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQL 158 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (579)
+.+.+.+|+++...|.. ++...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+.+.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 66778888887766664 222221222222 234566666776666655432 333333333334455666666666
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 043608 159 HAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
|+...+-+--. ...+|+..+ +..+.|+.+.|++...++.++|+ +..+
T Consensus 167 FqaAlqvsGyq-------------------------------pllAYniAL-aHy~~~qyasALk~iSEIieRG~-r~HP 213 (459)
T KOG4340|consen 167 FQAALQVSGYQ-------------------------------PLLAYNLAL-AHYSSRQYASALKHISEIIERGI-RQHP 213 (459)
T ss_pred HHHHHhhcCCC-------------------------------chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh-hcCC
Confidence 65555432111 223444433 34456778888888888888775 2221
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCC-------hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChHHHHHHHHHhh
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPD-------LASWNALIAGVASHSNANEAMSLFSEMRDR-ELLPDGLTVHSLLCACI 310 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 310 (579)
..-..+..--.. .+.+..|- +..+|.-...+.+.|+.+.|.+-+-.|.-+ .-..|+.|...+.-. -
T Consensus 214 ElgIGm~tegiD-----vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n 287 (459)
T KOG4340|consen 214 ELGIGMTTEGID-----VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-N 287 (459)
T ss_pred ccCccceeccCc-----hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-c
Confidence 110000000000 00000000 122333344556789999999988888643 234566776554322 1
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHH-hcCCHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACL-QHNQAEEL 385 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~a 385 (579)
..+++....+-+..+.+.+. -...++..++-.||+..-++.|-.++-+-... .+...|+. +.++. ..-..+++
T Consensus 288 ~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea 365 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEA 365 (459)
T ss_pred ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHH
Confidence 23445556666666666654 45678888888999998888888887664222 13333433 33333 23455666
Q ss_pred HHHHHHH
Q 043608 386 FRLFSRM 392 (579)
Q Consensus 386 ~~~~~~m 392 (579)
++-++.+
T Consensus 366 ~KKL~~L 372 (459)
T KOG4340|consen 366 FKKLDGL 372 (459)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-08 Score=88.22 Aligned_cols=218 Identities=11% Similarity=-0.012 Sum_probs=156.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCC--cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIR--PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.....++.+.++.-+..+.......|+ ...|..+...+...|+.++|...|++.++.. +.++..|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 344456777888888888864233332 2357777778889999999999999999876 6678899999999999999
Q ss_pred hhhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999864 4 3567788888889999999999999999886 454432222223344667899999999776
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHH--HHHHHhcccCC-------CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRIL--DARNVFSGIAR-------KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
.... .++... ..+...+ .|+.. .+.+.+.+-.+ +...+|..+...+.+.|++++|...|++..+.+
T Consensus 192 ~~~~-~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5433 233222 2333333 44443 33333322111 234688999999999999999999999998775
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-05 Score=76.94 Aligned_cols=166 Identities=11% Similarity=0.111 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
|..+.+.|...|+++.|.++|-+.- .+.-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 3444455555555555555543221 12333444455555555444433221 222233333333334444
Q ss_pred cCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 347 CSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
.|++.+|.+++-.++.+ + ..|..|-+.|..+..+++..+-... .-..|...+..-+...|+...|.+-|-+
T Consensus 837 hgkf~eaeqlyiti~~p-~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIGEP-D-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hcchhhhhheeEEccCc-h-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 55555555555444433 1 1234445555555555444432111 0122344445555556666666554433
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.. -|.+-+.+|...+.+++|.++-+.
T Consensus 908 a~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 908 AG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 22 133444555555566666555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-05 Score=70.45 Aligned_cols=287 Identities=11% Similarity=0.076 Sum_probs=184.9
Q ss_pred HcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
+-.++...+...+-.+.....-| +......+...+...|+.+++...|+...-.++. +........-.+.+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455556666555555544444 4555667777888888888888888887755321 222222333345667777777
Q ss_pred HHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 354 LLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 354 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
..+...+ ..+.+...|..-.......++++.|+.+-++.++.. +.+...+..-...+...++.++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7776665 111234445555555566778888888887776652 2223333333456677788888888887766543
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHH-HHHH-hcCCcHHHHHHHHHHHhCCCCCCh-hHH
Q 043608 432 LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLI-LGYA-QFGCGDEALKLFTRMRSLGVSPNL-VTL 505 (579)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 505 (579)
+.+...|.-|+.+|...|.+.+|.-+-+...+ .+..+...+. ..+. ...--++|.++++.... +.|+. ...
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 24677888888888888888888766554331 3333333331 1222 12234778888877665 35663 467
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|... ...|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77788888889999999999888753 678888888999998888899988888766 44443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-08 Score=79.35 Aligned_cols=193 Identities=12% Similarity=0.000 Sum_probs=153.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhc
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQ 113 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 113 (579)
+...|.-.|.+.|++..|..-+++.++++ +.+..+|..+...|.+.|+.+.|.+.|++... .+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45567777888999999999999999887 66777888888999999999999998888763 456678888888899
Q ss_pred CCChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHH
Q 043608 114 NYQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARN 192 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 192 (579)
.|++++|...|++....-.-| -..+|..+.-+..+.|+++.|...|++.++... ......-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999887754333 246788888888899999999999999888753 334566678888889999999999
Q ss_pred HhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 193 VFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 193 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
.++....+ +..+.-..|+.--+.|+.+.+-+.=.++...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887654 4555556677777889988888877777665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-05 Score=76.70 Aligned_cols=180 Identities=11% Similarity=-0.023 Sum_probs=128.0
Q ss_pred ChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhh
Q 043608 14 LYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGF 93 (579)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 93 (579)
+...|+..|-+..+. .+.=...|..|...|....+...|...|+...+.+ ..+..........|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 356666666655553 22223478888888888889999999999999877 667778888999999999999999984
Q ss_pred cCCCCCC-----eeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccC
Q 043608 94 DKMPQRN-----VVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHG 168 (579)
Q Consensus 94 ~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (579)
-...+.+ ...|....-.|.+.++...|+.-|+...... +-|...|..+..+|...|++..|.++|.+.....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 4433321 2234444445778888888988888887653 446678888899999999999999998877665422
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
+....-...-..+..|++.+|...+..+.
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222233344567788888888776654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.6e-05 Score=73.05 Aligned_cols=219 Identities=13% Similarity=0.110 Sum_probs=140.6
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHH--hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISA--CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.....+++..|+....++.+..+..+ |..++.+ +.+.|+.++|..+++.....+ ..|..+...+-.+|.+.|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhh
Confidence 45567899999999999998633332 3333444 567899999999999887666 3488899999999999999
Q ss_pred hhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCC-Cc---------ch
Q 043608 86 LEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGL-GS---------VC 153 (579)
Q Consensus 86 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-~~---------~~ 153 (579)
.++|..+|++..+ |+......+.-+|++-+++.+-.+.--+|-+. .+-+...|=+++...... .. ..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999986 55445555566777877776544444344332 222334433344333211 11 12
Q ss_pred hHHHHHHHHHHhc-cCCChhHHHHHHHHHhcCCCHHHHHHHhcc-----cCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 154 LGRQLHAHVIKSE-HGSHLIAQNALIAMYTKFDRILDARNVFSG-----IARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 154 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
.|.+..+.+.+.+ ......-...-...+...|++++|.+++.. ....+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3444555555443 211222222334455678889999988832 2222444445566677788889999988888
Q ss_pred HHhcC
Q 043608 228 MLHHG 232 (579)
Q Consensus 228 m~~~~ 232 (579)
+..+|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88885
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-06 Score=77.44 Aligned_cols=116 Identities=6% Similarity=-0.102 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHhCC-CCCC--hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 278 SNANEAMSLFSEMRDRE-LLPD--GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
++.+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666665555431 1221 1223333344445555555555555555543 223444455555555555555555
Q ss_pred HHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 355 LVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 355 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
..|+.. ...| +..+|..+..++...|++++|.+.+++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555443 2122 233444444444445555555555555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-08 Score=87.35 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHH----hcCCc
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP-DVVSWSSLILGYA----QFGCG 483 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~ 483 (579)
..+...|++++|.+++... .+.......+.+|.+.++++.|.+.++.|.+- +-.+...+..++. -...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3445556666666655431 24455555666666777777777666666541 1122222333222 22356
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh-hHHHHHHH
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV-HEAEDFIN 562 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 562 (579)
.+|..+|+++.+. ..+++.+++.+..++...|++++|.+++.+.... -+-++.+...++-+....|+. +.+.++++
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7777777776553 4556666777777777777777777777665532 122344555566666666655 55666666
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
++
T Consensus 261 qL 262 (290)
T PF04733_consen 261 QL 262 (290)
T ss_dssp HC
T ss_pred HH
Confidence 66
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-05 Score=74.09 Aligned_cols=298 Identities=8% Similarity=-0.078 Sum_probs=182.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCChHHHH-HHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHH--
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRE-LLPDGLTVH-SLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNA-- 339 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 339 (579)
...|..+...+...|+.+.+...+....... ..++..... .....+...|+++.+..+++...+... .+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 4556666677777788888766666654432 122322221 222345678999999999999888742 23333331
Q ss_pred -HHHHHHhcCChHHHHHHHHHc-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 340 -ILTMYAKCSVLCNALLVFKEL-GKNADS-VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 340 -l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
........+....+.+.+... +..|+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111222345566666666543 222332 334456667888999999999999998874 4445677788889999999
Q ss_pred hHHHHHHHHHHHHcCCC-Cch--hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHH------HHHHHHHhcCCcHH
Q 043608 417 LEMVTQLHCYITKTGLA-FDV--FVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWS------SLILGYAQFGCGDE 485 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~------~l~~~~~~~~~~~~ 485 (579)
+++|...+++..+.... ++. ..+..+...+...|++++|..++++... |....+. .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988865422 232 3455788889999999999999998763 3112221 22333334454433
Q ss_pred HHHH--HHHHHhCCC--CCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC--------CcchhHHHHHHHHhcCC
Q 043608 486 ALKL--FTRMRSLGV--SPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP--------TREHCSCVVDLLARAGC 553 (579)
Q Consensus 486 a~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~ 553 (579)
+.+. +........ ............++...|+.++|..+++.+... ...+ .........-++...|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 3333 111111111 111222235677788999999999999998764 2110 11122223334568999
Q ss_pred hhHHHHHHHhh
Q 043608 554 VHEAEDFINQM 564 (579)
Q Consensus 554 ~~~A~~~~~~~ 564 (579)
.++|.+.+...
T Consensus 323 ~~~A~~~L~~a 333 (355)
T cd05804 323 YATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-05 Score=75.52 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCC-------C-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVS-------P-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
....++...|+.+.|..+++.+...... . ..........++...|+.++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566777777777777776653211 0 1112233334456778888888887777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-07 Score=81.61 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
.....+..+.+.++++.|.+.++.+..-.+..+...+..++.. .+.+.+|.-+|+++.+. ..++..+.+.+..++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 3333444444444444444444444222122222223332221 12345555555554433 334444555555555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHhhCC
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL-GSARKLFNFME 463 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 463 (579)
...|++++|.+++.+....+. -++.+...++-+....|+. +.+.+.+.++.
T Consensus 212 l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555555554443221 2334444444444444444 34444554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0001 Score=79.74 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC------CCChH--HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc----hhH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL------LPDGL--TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV----PVC 337 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~------~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 337 (579)
....+...|+++++...+......-- .+... ....+-..+...|+++.+...++...+.-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 33444566778888777776643210 11111 1111123345677888888887776653211111 223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-------CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-cHh
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-------GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIK--P-DHI 402 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~ 402 (579)
+.+...+...|++++|...+++. +.. +...++..+...+...|+++.|...+++.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44455566678888887777664 111 11223445556677788888888877765442 211 1 122
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc--CCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCCC----C-ChhhHH--
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKT--GLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFMEN----P-DVVSWS-- 471 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~-- 471 (579)
.+..+...+...|++++|...+...... ...+ ....+..+...+...|+.++|...+..... . ....+.
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 2334444556668888888777766532 1111 233344455666777888888777766531 1 111111
Q ss_pred ---HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh---hHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCC-cchh
Q 043608 472 ---SLILGYAQFGCGDEALKLFTRMRSLGVSPNL---VTLVGVLTACSHVGLVEEGLHLYRIMENEY---GIIPT-REHC 541 (579)
Q Consensus 472 ---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~ 541 (579)
..+..+...|+.+.|.+.+.+.......... ..+..+..++...|++++|...+++..... +..++ ..+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1123344567777777776665432111111 113455666777788888888877765431 22221 2245
Q ss_pred HHHHHHHHhcCChhHHHHHHHhh
Q 043608 542 SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..++.+.|+.++|...+.+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667777888888888777766
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-05 Score=70.71 Aligned_cols=224 Identities=12% Similarity=0.063 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHH-------
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNA------- 339 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 339 (579)
...+.+...+..+++.+++-+....+.. -+..-++..-.++...|....+........+.|.. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445556666666777777776666543 23333344445566666666666655555554422 1111222
Q ss_pred HHHHHHhcCChHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCCh
Q 043608 340 ILTMYAKCSVLCNALLVFKELG-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASL 417 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~ 417 (579)
+..+|.+.++++.++..|++.- ...+.. ...+....+++........-. .|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 2224444556666666665531 100111 111122233333333332222 22221 111123455667777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
..|...+.++++.. +-|...|....-+|.+.|.+..|++-.+...+.| ...|..=..++....++++|.+.|.+..
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665 3466777777777777777777777666555422 2233333344445556777777777777
Q ss_pred hCCCCCChhHH
Q 043608 495 SLGVSPNLVTL 505 (579)
Q Consensus 495 ~~~~~p~~~~~ 505 (579)
+. .|+..-+
T Consensus 454 e~--dp~~~e~ 462 (539)
T KOG0548|consen 454 EL--DPSNAEA 462 (539)
T ss_pred hc--CchhHHH
Confidence 64 3544433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0002 Score=62.77 Aligned_cols=289 Identities=13% Similarity=0.103 Sum_probs=186.5
Q ss_pred HHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHH---HHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 043608 176 ALIAMYTKFDRILDARNVFSGIARKDVTSWGSMI---AAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFA 252 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~ 252 (579)
.+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------------------- 101 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------------------- 101 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---------------------
Confidence 3455556667777777777766666665555543 3466666666666666666554
Q ss_pred HHHhhcCCCCChhhHHH-HHHHHHcCCChHHHHHHHHHHHhCCCCC------------Ch--HHHHHHHHHhhcccchhh
Q 043608 253 RILFNEIDSPDLASWNA-LIAGVASHSNANEAMSLFSEMRDRELLP------------DG--LTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~--~~~~~ll~~~~~~~~~~~ 317 (579)
+||-..-.. -...+.++|.++.|..=|+........- -. ......+..+...|+...
T Consensus 102 --------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 102 --------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred --------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh
Confidence 333222111 1244667788888888777776552110 00 112333455667788888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
+++....+++.. +-+...+..-..+|...|++..|+.-++.. ... +..++--+-..+...|+.+.++...++..+
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 888888888764 346777778888899999999988777665 222 555666667777888888888888888776
Q ss_pred CCCCCcHhHHHHH-------H------HHHhccCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHHcCCHHHHHHH
Q 043608 395 SQIKPDHITFNDV-------M------GACAKMASLEMVTQLHCYITKTGLAFDV---FVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 395 ~~~~p~~~~~~~l-------~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
. .||....... . ......++|.++.+-.+...+....... ..+..+-.++...+++.+|.+.
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4 5665432211 1 1223456666677766666655443222 2344556677788889999888
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 043608 459 FNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLG 497 (579)
Q Consensus 459 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 497 (579)
..++.+ | |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888774 3 35666666778888888888888888888753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-08 Score=55.75 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0002 Score=77.62 Aligned_cols=260 Identities=9% Similarity=-0.046 Sum_probs=170.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC-----CchhHHHHHH
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS-----NVPVCNAILT 342 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~ 342 (579)
..+...|++++|...+++....-...+. .....+...+...|+++.|...++......... .......+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4556789999999999987763111121 223444455677899999999988876542111 1234455566
Q ss_pred HHHhcCChHHHHHHHHHc-------CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCc--HhHHHHHH
Q 043608 343 MYAKCSVLCNALLVFKEL-------GKN--A-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ--IKPD--HITFNDVM 408 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~ 408 (579)
.+...|+++.|...+++. +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 778899999999887764 211 1 12234455566777899999999998875531 1122 23344455
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCC-chhHH-----HHHHHHHHHcCCHHHHHHHHhhCCCCChh-------hHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAF-DVFVM-----NGLMDIYIKCGSLGSARKLFNFMENPDVV-------SWSSLIL 475 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~ 475 (579)
......|+.+.|.+.+.......... ....+ ...+..+...|+.+.|.+.+.....+... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67778999999999988876421111 11111 11234456689999999998776643211 1345667
Q ss_pred HHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 476 GYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999987653 32222 236667778889999999999999999864
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00042 Score=64.71 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
.+....+++++...-..--.-+|...++...+..-.+.|..+|.+..+.+..+ ++.+.++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666554322233466777777778888889999999999877766 7788888888776 467888889888
Q ss_pred hCCC--CChhhH-HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 043608 461 FMEN--PDVVSW-SSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYG-- 533 (579)
Q Consensus 461 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 533 (579)
--.+ +|...| ...+.-+...++-..+..+|++....++.|+ ...|..++.--..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 444443 5667777888888899999999988877766 45889999888888999999988888876544
Q ss_pred CCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 534 IIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+....-..+++-|.-.+...--..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444444555666666555554444434333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00016 Score=72.37 Aligned_cols=558 Identities=10% Similarity=0.014 Sum_probs=265.4
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
.....|.+...++.|..+.-...+......-...+...--.+...++...|..-|+..++.. +.|...|..+..+|.++
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 34556666666666666633222211111111111222222445566777777777776655 56777888888888888
Q ss_pred CChhhHHHhhcCCCCCCeee-hhHHhh--hhhcCCChhhHHHHHHHHHHC------CCCCCcccHHHHHHHhcCCCcchh
Q 043608 84 GSLEDARMGFDKMPQRNVVS-WTAMIA--GCSQNYQENDAIKLYIQMLQS------GVMPGQFTFGSIIKACSGLGSVCL 154 (579)
Q Consensus 84 g~~~~A~~~~~~~~~~~~~~-~~~l~~--~~~~~~~~~~a~~~~~~~~~~------g~~p~~~~~~~li~~~~~~~~~~~ 154 (579)
|++..|+++|.+...-++.. |...-. .-+..|.+.+|++.+...... +..--..++..+...+...|=..+
T Consensus 610 Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 88888888887776533332 222221 235567788887777665432 111111223223333333332223
Q ss_pred HHHHHHHH-------HHhccCCChhHH-------------------HHHHHHHhc----CCCH---H---HHHHHhcccC
Q 043608 155 GRQLHAHV-------IKSEHGSHLIAQ-------------------NALIAMYTK----FDRI---L---DARNVFSGIA 198 (579)
Q Consensus 155 a~~~~~~~-------~~~~~~~~~~~~-------------------~~l~~~~~~----~g~~---~---~a~~~~~~~~ 198 (579)
+..+++.. .......+...| ..++..+.+ .+.. | -+.+.+-.-.
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 33332222 111111111111 111111111 1111 1 0000000000
Q ss_pred --CCcHhhHHHHHHHHHh-------cC-ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH---H--HHHHhhc---CC
Q 043608 199 --RKDVTSWGSMIAAFSK-------LG-YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN---F--ARILFNE---ID 260 (579)
Q Consensus 199 --~~~~~~~~~l~~~~~~-------~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~---~--~~~~~~~---~~ 260 (579)
..+..+|..+...|.+ .+ +...|...++..++.. ..+..+|+.+ ..... . ++.-|-. ..
T Consensus 770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc
Confidence 0123444444443332 12 2246777777776653 3333444332 22111 1 1111111 11
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHH----cCCCCCch
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIK----MGFDSNVP 335 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 335 (579)
+.+..+|..+...+.+..+++.|...|...+.- .|+ ...+-.........|+.-+...++..--+ .|--+...
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 455667878888888888999999988877643 443 22232222223344666666666655222 12223333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL------------GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS-QIKPDHI 402 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 402 (579)
-+-.........|+.++-+...+.+ +.+-+..+|.......-+.+.+..|..+..+.... ..+-+..
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344445566666555544443 22234556777666666777777777776664321 0123444
Q ss_pred HHHHH----HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC-hhhHHH
Q 043608 403 TFNDV----MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD-VVSWSS 472 (579)
Q Consensus 403 ~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~ 472 (579)
+|+.+ .+.++..|.++.|..-+..... ..+......-+.. .-.++++++.+.|++... .| ++....
T Consensus 1005 qynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1005 QYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 44432 2344556666655544322110 0011111111111 225778888888887762 33 334445
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH---hhCCCCCcchhHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN---EYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 549 (579)
++.+....+.-+.|...+-+..... +|+..+...+--.+.-..+-.....+++++.+ .-.+.-++.. ..-..|.
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l--l~e~i~~ 1157 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL--LKELIYA 1157 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH--HHHHHHH
Confidence 5555566777788877776666542 45544444443333333333333333333332 1011111111 1223466
Q ss_pred hcCChhHHHHHHHhh-cCCC-ChhHhh
Q 043608 550 RAGCVHEAEDFINQM-ACDA-DIVVWK 574 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~-~~~~-~~~~~~ 574 (579)
+.|+-....+.+++. -+.| |+..|.
T Consensus 1158 ~~~r~~~vk~~~qr~~h~~P~~~~~Ws 1184 (1238)
T KOG1127|consen 1158 LQGRSVAVKKQIQRAVHSNPGDPALWS 1184 (1238)
T ss_pred HhhhhHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888888888 2334 455554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-05 Score=67.67 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=116.0
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChh-HHHHHHHHHHccCC
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVV-LQNHILNMYGKCGS 85 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 85 (579)
..+..+|++.+|+..|...... .+.+-.++..-...|...|+...|+.-++.+++. .||-. ..-.....+.++|+
T Consensus 46 k~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 3455566666666666665542 2222222222233455566666666666666544 33321 22222344556666
Q ss_pred hhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHh
Q 043608 86 LEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKS 165 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (579)
++.|..=|+.+.+.++. +|...+|.+-+....+. ......+..+...|+...|+.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 66666666555431110 01111111111100000 01223344556678888888888888776
Q ss_pred ccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC---CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 166 EHGSHLIAQNALIAMYTKFDRILDARNVFSGIA---RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
. +.|...+..-..+|...|+...|+.-++... ..++..+--+-..+...|+.+.++...++..+.
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 4 5678888888888999999888877665543 446677777777788889999999888888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=53.00 Aligned_cols=32 Identities=41% Similarity=0.538 Sum_probs=16.2
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 431 GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-05 Score=73.89 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=161.4
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSA 247 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~ 247 (579)
+|--..-..+...+...|-...|..+|+++ ..|.-.|.+|...|+.++|..+..+..++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---------------- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---------------- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC----------------
Confidence 344445566777888888899999998875 45777788889999999999888888774
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043608 248 CSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIK 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (579)
+|+...|..+.+......-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+
T Consensus 454 -------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~ 513 (777)
T KOG1128|consen 454 -------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE 513 (777)
T ss_pred -------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh
Confidence 788888888888887777788888888765432 111111122346788888888887777
Q ss_pred cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 328 MGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
.+ +....+|-.+..+..+.++++.|.+.|..- ..+-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...+.
T Consensus 514 ~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWE 591 (777)
T KOG1128|consen 514 IN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWE 591 (777)
T ss_pred cC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeee
Confidence 65 345667777777778888888888888764 333355679999999999999999999998888876 44455566
Q ss_pred HHHHHHhccCChHHHHHHHHHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
..+....+.|.++.|.+.+.++.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHH
Confidence 66666778888888888887776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-05 Score=63.74 Aligned_cols=137 Identities=13% Similarity=0.078 Sum_probs=69.5
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCc
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCG 483 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~ 483 (579)
..|++.+++++|........ +......=+.++.+..+++-|.+.++.|.+ .+..+.+.|..++.+ .+.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 44555566666655544311 122222223344455556666666666654 233344444444432 2345
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV 554 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (579)
.+|.-+|++|-++ .+|++.+.+..+.++...|++++|..+++....+ -..++++...++-+-...|.-
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 6666666666553 4556666666666666666666666666666543 222344444444444444543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-06 Score=67.53 Aligned_cols=90 Identities=10% Similarity=-0.107 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (579)
.+...+...|++++|...|++..... +.+...+..+..++...|++++|...|++.... -+.+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 34444555555555555555555432 223445555555555555555555555555531 222344555555555555
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
|++++|...+++.
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00021 Score=66.69 Aligned_cols=386 Identities=11% Similarity=0.002 Sum_probs=222.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCC-hhHHHHHHHHHHccCCh
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPD-VVLQNHILNMYGKCGSL 86 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 86 (579)
+.+..|+++.|+..|-..... .++|...|..-..+++..|++++|.+--.+-.+.. |+ +..|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 456789999999999988875 55688888888889999999999887766666543 44 56788888888888999
Q ss_pred hhHHHhhcCCCC--C-CeeehhHHhhhhhcC---CC--------------h--------hhHHHHHHHHHHCCCCCCccc
Q 043608 87 EDARMGFDKMPQ--R-NVVSWTAMIAGCSQN---YQ--------------E--------NDAIKLYIQMLQSGVMPGQFT 138 (579)
Q Consensus 87 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~---~~--------------~--------~~a~~~~~~~~~~g~~p~~~~ 138 (579)
++|+.-|.+-.+ | |...++-+..++... ++ + +.-..+++..... +-+...
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~--p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN--PTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC--cHhhhc
Confidence 999999887664 2 233444444443110 00 0 0000111111100 000000
Q ss_pred ---HHHHHHHhcCCCcchhH-----------------------HHHHHHHHH-hccCCChhHHHHHHHHHhcCCCHHHHH
Q 043608 139 ---FGSIIKACSGLGSVCLG-----------------------RQLHAHVIK-SEHGSHLIAQNALIAMYTKFDRILDAR 191 (579)
Q Consensus 139 ---~~~li~~~~~~~~~~~a-----------------------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 191 (579)
...++.+.......+.- .....+..+ .....-..-...+.+..-+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111100000000 000000000 000001122455677777788888888
Q ss_pred HHhcccCCC--cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 192 NVFSGIARK--DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 192 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
+-+....+- ++.-++....+|...|.+..+...-....+.|. -....+..+-.. +..
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~-------------------~~r 303 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKA-------------------LAR 303 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHH-------------------HHH
Confidence 877765443 444566667778888888887777777666652 222233332211 112
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+..++.+.++++.+...|++.......|+..+ +....+++....+...-.+... ..-...-.+.+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 44567777888888888888766555554322 2223333333333332222221 1111222566778888
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 350 LCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 350 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
+..|++.|.++ ..+-|...|.....+|.+.+.+..|+.=-+...+.. ++....|..=..++....+++.|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 333466778888888888888888887777666652 333455555556666777888888888887
Q ss_pred HHcC
Q 043608 428 TKTG 431 (579)
Q Consensus 428 ~~~~ 431 (579)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 7654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=70.97 Aligned_cols=181 Identities=12% Similarity=0.003 Sum_probs=117.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-H---hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-H---ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FV 438 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 438 (579)
....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|...++.+.+....... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45567778888899999999999999987753 32 2 35667778888899999999999998865432221 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 439 MNGLMDIYIKC--------GSLGSARKLFNFMEN--PDVV-SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 439 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
+..+..++.+. |+.++|.+.++.+.+ |+.. .+..+... ..+... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHH
Confidence 44444445443 556677777766653 3321 11111110 000000 0 001124
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+...+.+.|++++|...++...+.+.-.| ....+..+..++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55668888999999999999887532222 24577788999999999999999988884
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-05 Score=76.56 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=146.7
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccCCC--------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIARK--------DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.....|-..|......++++.|++++++.... -...|.++++.-..-|.-+...++|++..+..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-------- 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-------- 1527 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------
Confidence 34555666666677777777777777665432 12356666666666666677777777765541
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHH
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 320 (579)
.....|..|...|.+.++.++|.++|+.|.++ ..-....|...+..+.+.++-+.|..
T Consensus 1528 ---------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1528 ---------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred ---------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 22345667777788888888888888888765 22455667777777777777777777
Q ss_pred HHHHHHHcCCC-CCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043608 321 VHSYIIKMGFD-SNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI 397 (579)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 397 (579)
++...++.-.+ -......-.+..-.+.|+.+++..+|+.. ..+-....|+..+..-.++|+.+.+..+|++....++
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77777665322 13344455566667788888888888876 2222567888888888888998999999999888877
Q ss_pred CCcHh--HHHHHHHHHhccCChHHHH
Q 043608 398 KPDHI--TFNDVMGACAKMASLEMVT 421 (579)
Q Consensus 398 ~p~~~--~~~~l~~~~~~~~~~~~a~ 421 (579)
.|-.. .|...+..=-..|+-+.++
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 76532 3333333333334433333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-05 Score=76.76 Aligned_cols=216 Identities=14% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
.+|-...-..+...+.+.|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..++ +|++.-|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 3444455566778888899999999998865 35667788899999999999988887774 788888888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 486 (579)
..-...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777788888887654422 112222223346788888888887664 2356777777777888899999
Q ss_pred HHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 487 LKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|.+.... .|| ...|+.+..+|.+.|+-.+|...+.+..+- + .-+..+|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999888873 565 458889999999999999999988888864 4 445556777777778889999999888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0001 Score=76.33 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=97.3
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHc-CCCC---CchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChh-hHHHHHHHH
Q 043608 302 VHSLLCACIGRLTLYQGMQVHSYIIKM-GFDS---NVPVCNAILTMYAKCSVLCNALLVFKELGKNADSV-SWNSIIAAC 376 (579)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~ 376 (579)
|-..|......++.++|.++.++++.. ++.- -..+|.++++.-...|.-+...++|++...--|+. .|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444445555555555555554432 1111 11234444444444555555555555553222322 345555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FDVFVMNGLMDIYIKCGSLGSA 455 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 455 (579)
.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.+..+.-.+ -......-.++.-.+.|+.+++
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 5555556666666555554 2234445555555555555555555555555433211 1223333444444555555555
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 456 RKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 456 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
..+|+.... .-...|+.++..-.++|+.+.+..+|++....++.|
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 555555542 234455555555555555555555555555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-05 Score=68.64 Aligned_cols=185 Identities=9% Similarity=-0.029 Sum_probs=127.9
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--hHH
Q 043608 332 SNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH--ITF 404 (579)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 404 (579)
.....+..+...+...|+++.|...|+++ ...|+ ...+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567777888899999999999999987 33333 246778889999999999999999999886321111 134
Q ss_pred HHHHHHHhcc--------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 043608 405 NDVMGACAKM--------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILG 476 (579)
Q Consensus 405 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 476 (579)
..+..++... |+.+.|.+.++.+.+.... +......+..... ..... ......+...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 4444555443 7788999999998876432 2222222211110 11100 0111245667
Q ss_pred HHhcCCcHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 477 YAQFGCGDEALKLFTRMRSLGV-SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+..+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999987632 12 2467889999999999999999999998865
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0029 Score=63.14 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=143.0
Q ss_pred hcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH--HHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhH
Q 043608 46 SSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM--YGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 46 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 120 (579)
...+++.+|.+-...+.+.. |+. .|..++.+ +.|.|+.++|..+++.... .|..+...+-..|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678889999999888764 332 23333443 4589999999999988763 4677888888999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----------HHHH
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----------ILDA 190 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a 190 (579)
..+|++.... -|+..-...+..+|++.+++.+-.+.--++.+ ..+.....+-++++.....-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999875 67777777788888888887765555555444 344556666666666554321 1124
Q ss_pred HHHhcccCCCc-----HhhHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 191 RNVFSGIARKD-----VTSWGSMIAAFSKLGYELEALCHFNE-MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 191 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
.+.++.+.+.+ ..-...-...+-..|++++|++++.. ..+.-. ..+.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~---------------------------~~~~ 226 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT---------------------------SANL 226 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc---------------------------ccch
Confidence 44444443322 11222233445567788888888843 333211 3334
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRE 294 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 294 (579)
..-+--++.+...++|.+..++-.++...|
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444556677777888888888888888775
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0023 Score=60.04 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN---A-DSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
.+.....++.+...-...-..+|..+++...+..-+..|..+|.+.+.. + ++...++++.-+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 5556666666665543334456777777777788888888888877322 2 5556666666555 466778888887
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--VFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
--... ..-+..-....+.-+...++-..+..+|+.....++.++ ..+|..+++.-.+-|++..+.++-++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 64443 223334445566677777888888888888887755543 5778888888888888888777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00022 Score=67.06 Aligned_cols=216 Identities=13% Similarity=0.150 Sum_probs=140.6
Q ss_pred HhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhh
Q 043608 181 YTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFN 257 (579)
Q Consensus 181 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 257 (579)
+.+.|++.+|.-.|+...+. +..+|.-|.......++-..|+..+++..+..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------------------- 349 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD------------------------- 349 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------------------------
Confidence 45677777777777765544 44577777777777777778888777777664
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----C---ChHHHHHHHHHhhcccchhhHHHHHH-HHHHc
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELL-----P---DGLTVHSLLCACIGRLTLYQGMQVHS-YIIKM 328 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~ 328 (579)
+.|....-.|.-.|...|.-..|+..++.......+ + +...-.. ..+.....+....++|- .....
T Consensus 350 ---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 350 ---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred ---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 456777777788888888888888888777543210 0 0000000 11111222233333433 33445
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHH
Q 043608 329 GFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFN 405 (579)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~ 405 (579)
+..+|+.+...|.-.|--.|++++|...|+.. ..+| |...||.|...++...+.++|+.-|++..+. +|+- ....
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~Ry 502 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRY 502 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeeh
Confidence 54577777778877788888888888888875 4444 4557888888888888888888888888775 6663 3444
Q ss_pred HHHHHHhccCChHHHHHHHHHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
-|.-+|...|.+++|...|-...
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHH
Confidence 45566777777777777665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=74.36 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667777888888888888887666666677888888888888999998888652 3356667777777889999
Q ss_pred hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 518 VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
++.|+.+.+++.. ..|+ ..+|..|..+|...|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998885 3554 4588899999999999999999999886443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00052 Score=70.39 Aligned_cols=239 Identities=11% Similarity=0.059 Sum_probs=161.3
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGC 111 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 111 (579)
+.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++..++..+ .++...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 4455688889999989999999999999877664 33344444444466677776655443 344455
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHH
Q 043608 112 SQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDAR 191 (579)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 191 (579)
....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 5556665555666666653 3344578888899999999999999999999987 66788899999999999 999999
Q ss_pred HHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhH-HHHHHHHHHHHHHHhhcC-CCCChhhHHH
Q 043608 192 NVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF-GSVFSACSNFARILFNEI-DSPDLASWNA 269 (579)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 269 (579)
+++.+. +..+...+++.++.+++.++.... |+...+ ..++..... .. ...-+.++-.
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i~~ki~~-------~~~~~~~~~~~~~ 228 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRIERKVLG-------HREFTRLVGLLED 228 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcC---cccchHHHHHHHHHHh-------hhccchhHHHHHH
Confidence 886653 444777789999999999998773 332222 222211111 00 1233455566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACI 310 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (579)
+-..|...++|+++..+++...+.. +-|.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 6677777888888888888887652 223344444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-05 Score=69.79 Aligned_cols=247 Identities=12% Similarity=0.101 Sum_probs=152.7
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++. ...| |....-.|.-.|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4445555555555555543 224455555555555555555555555443 2222 444555666666666666666666
Q ss_pred HHHHHHCCCC--------CcHhHHHHHHHHHhccCChHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 389 FSRMLASQIK--------PDHITFNDVMGACAKMASLEMVTQLHCY-ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 389 ~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
++.-.....+ ++...-.. ..+.....+....++|-. ....+..+|+.+...|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6654433110 00000000 111222233344444444 445565688888999999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHHHHHHHHHHHHhh--C
Q 043608 460 NFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL-VTLVGVLTACSHVGLVEEGLHLYRIMENEY--G 533 (579)
Q Consensus 460 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~ 533 (579)
+.+.. .|..+||.|...++...+.++|+.-|.+.++ ++|+- +..-.|.-.|...|.+++|.+.|=...... +
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 98873 4678999999999999999999999999998 57873 355567778999999999999877655321 1
Q ss_pred C------CCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 534 I------IPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 534 ~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
. .++..+|..|=.++.-.++.+.+.+...
T Consensus 532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred cccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 1 1122356666555666666665555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=62.22 Aligned_cols=155 Identities=16% Similarity=0.081 Sum_probs=107.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG 481 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 481 (579)
..+-..+...|+-+....+....... ...+......++....+.|++.+|...+.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455566666666666555553322 123455566677777888888888888887763 56777888888888888
Q ss_pred CcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (579)
+++.|..-|.+..+. .| ++..++.+.-.+.-.|+.+.|..++...... -.-+..+-..|..+....|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888888774 44 3556777777777778888888888877653 222555666777777788888888877
Q ss_pred HHhh
Q 043608 561 INQM 564 (579)
Q Consensus 561 ~~~~ 564 (579)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00014 Score=61.57 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=105.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+..|...|+++.+....+.+... . . .+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34577778877765554332211 0 0 1122455666666666666654 34777888888888899999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHH-HhcCC--cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 453 GSARKLFNFMEN---PDVVSWSSLILGY-AQFGC--GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 453 ~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
++|...+++..+ .+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988888764 3566677777764 56676 489999999998864 2256688888888899999999999999
Q ss_pred HHHHhhCCCCCcchh
Q 043608 527 IMENEYGIIPTREHC 541 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (579)
++.+ ..+|+..-+
T Consensus 169 ~aL~--l~~~~~~r~ 181 (198)
T PRK10370 169 KVLD--LNSPRVNRT 181 (198)
T ss_pred HHHh--hCCCCccHH
Confidence 9886 345554443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00018 Score=60.92 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=88.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444455555555444443222 12233333345555566666666666666655433 4466666666666666666
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
++.|..-|.+..+ .+....+.+...|.-.|+++.|..++......+ .-|...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666665543 345556666666677777777777777776653 22555566666667777777777766553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00051 Score=63.57 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=91.8
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 485 (579)
......|+++.|+..++.+.+.. +-|+.......+.+.+.++.++|.+.++++.. |+ ...+-.+..+|.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456677777777777766543 34566666677778888888888888887763 55 3445566777888888888
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|+.++++.... .+-|+..|..|.++|...|+..++..-.. ..|...|++++|...+.+.
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 88888877765 24467788888888888877776654333 3444566666666666555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-05 Score=63.90 Aligned_cols=141 Identities=9% Similarity=-0.036 Sum_probs=105.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 485 (579)
..|...|+++.+....+.+... . ..+...++.+++...++...+ .|...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4677888888875554332211 1 012235566777777766553 567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHh-hccCc--hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTAC-SHVGL--VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
|...+++..+.. +-+...+..+..++ ...|+ .++|.+++++..+. -+-+...+..+...+.+.|++++|...++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999863 23566777888764 67777 59999999999964 23356688889999999999999999999
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
++
T Consensus 169 ~a 170 (198)
T PRK10370 169 KV 170 (198)
T ss_pred HH
Confidence 98
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0013 Score=55.89 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=71.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK---- 346 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 346 (579)
...|+..|++++|++...... +......=...+.+..+.+.|.+.++.|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345667777777777665411 11122222233445556666666666666543 44455555555443
Q ss_pred cCChHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 347 CSVLCNALLVFKELG--KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
.+.+.+|.-+|+++. .+|++.+.+-...++...|++++|..++++..... .-++.|..-++......|
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 234666666666663 33566666666666666666666666666666553 223444444444433444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.001 Score=68.36 Aligned_cols=169 Identities=13% Similarity=0.057 Sum_probs=92.8
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..|+..+...+++++|.++.+...+. .|+...+-.++..... +. .+.+-.....++.......++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~------q~-~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSL------SR-RPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHH------hh-cchhhhhhhhhhhhcccccch
Confidence 3445556666666666666666666655544 2222221111111000 00 011111111344444455555
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
..+..+...|.+. .-+...+..+..+|.+.|+.+++..+++.+++.. +-++.+.|.+...|... ++++|.+++...
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 5555555555543 2233466667777777788888888888887777 55777777777777777 777777766553
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS 395 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 395 (579)
+..+...+++.++..+|.++...
T Consensus 176 ------------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 176 ------------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ------------HHHHHhhhcchHHHHHHHHHHhc
Confidence 22245555666666666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00093 Score=61.13 Aligned_cols=142 Identities=10% Similarity=-0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc---CCc----HHHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQF---GCG----DEALK 488 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~----~~a~~ 488 (579)
++..+.+++.+... -+..+|+...-++.+.|+++++++.++++.+ .|...|+.....+.+. |+. ++.+.
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 34444444443332 1344444444444444455555555554442 2233344333333222 111 34445
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC------------
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG------------ 552 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 552 (579)
...+++... +-|...|+.+...+.. .+...+|.+.+.+.... -+.+...+..|++.|....
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 554554431 1234455555444444 22334455555554431 1223334555555555321
Q ss_pred ------ChhHHHHHHHhh
Q 043608 553 ------CVHEAEDFINQM 564 (579)
Q Consensus 553 ------~~~~A~~~~~~~ 564 (579)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 336677777777
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0047 Score=56.75 Aligned_cols=438 Identities=11% Similarity=0.037 Sum_probs=236.0
Q ss_pred ccCChhhHHHhhcCCCC---CCe------eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh--cCCC
Q 043608 82 KCGSLEDARMGFDKMPQ---RNV------VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC--SGLG 150 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~--~~~~ 150 (579)
+++++.+|.++|.++.+ .++ ..-+.++.+|.. ++.+.....+..+.+. .| ...|..+..++ .+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 56777778777777653 111 123445555543 3455555555555543 23 44455555543 3566
Q ss_pred cchhHHHHHHHHHHh--ccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 151 SVCLGRQLHAHVIKS--EHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
.+.+|.+.+...... +..+. ..+.=+. +++ ++...=+..+.++...|.+.++..+++++
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~------------~l~-----~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESP--WLDTNIQ------------QLF-----SDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccc--hhhhhHH------------HHh-----hHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 666666666555443 11110 0000000 000 02222345667778888888888888887
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC--------CC-------hHHHHHHHHHHHhC
Q 043608 229 LHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH--------SN-------ANEAMSLFSEMRDR 293 (579)
Q Consensus 229 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~-------~~~a~~~~~~m~~~ 293 (579)
...-. + +-..-+..+|+.++-.+.++ .. ++.+.-..++|...
T Consensus 155 ~~~ll-k----------------------rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 155 IERLL-K----------------------RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHh-h----------------------hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 65532 1 11124455555433222211 11 12222222233211
Q ss_pred ------CCCCChHHHHHHHHHhhc--ccchhhHHHHHHHHHHcCCCCCchh-HHHHHHHHHhcCChHHHHHHHHHcCC-C
Q 043608 294 ------ELLPDGLTVHSLLCACIG--RLTLYQGMQVHSYIIKMGFDSNVPV-CNAILTMYAKCSVLCNALLVFKELGK-N 363 (579)
Q Consensus 294 ------g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 363 (579)
.+.|....+..++....- .....--.++++.....-+.|+-.. ...+...+.+ +.+++..+-+.+.. +
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 244555555555554432 2334445556666655555555332 2333344433 55565555554411 1
Q ss_pred ------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH-------HHHHHHh-ccCCh---HHHHHHHHH
Q 043608 364 ------ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN-------DVMGACA-KMASL---EMVTQLHCY 426 (579)
Q Consensus 364 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~~~-~~~~~---~~a~~~~~~ 426 (579)
-=+.++..++....+.++...|.+.+.-+... .|+...-. .+.+..+ ....+ ..-..+|+.
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 13456888888899999999999888877654 44433211 2222223 22222 233334444
Q ss_pred HHHcCCCCchhHHHHHH---HHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHH----HHHHh---cCCcHHHHHHHHH
Q 043608 427 ITKTGLAFDVFVMNGLM---DIYIKCGS-LGSARKLFNFMEN---PDVVSWSSLI----LGYAQ---FGCGDEALKLFTR 492 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~ 492 (579)
....+++- ......|+ .-+.+.|. -+.|.++++.+.+ -|...-|... .+|.+ ...+.+-+.+-+-
T Consensus 368 ~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44443321 11122222 33555666 7788888888774 3443333322 23332 2344555555566
Q ss_pred HHhCCCCCC----hhHHHHHHHH--hhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcC
Q 043608 493 MRSLGVSPN----LVTLVGVLTA--CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMAC 566 (579)
Q Consensus 493 m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (579)
..+.|++|- ...-+.|..+ +...|++.++.-.-.-+. .+.|++.+|+.++-++....++++|..++..+|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 667888873 3355556555 567899999887666665 568999999999999999999999999999997
Q ss_pred CCChhHhhh
Q 043608 567 DADIVVWKS 575 (579)
Q Consensus 567 ~~~~~~~~~ 575 (579)
|+..+|++
T Consensus 523 -~n~~~~ds 530 (549)
T PF07079_consen 523 -PNERMRDS 530 (549)
T ss_pred -CchhhHHH
Confidence 57666665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=48.86 Aligned_cols=33 Identities=36% Similarity=0.653 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888888777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0018 Score=59.31 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=92.5
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 350 LCNALLVFKEL--GKNADSVSWNSIIAACLQHNQ--AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 350 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++..++.+ ..+.+..+|+.....+.+.|+ .++++..++++.+.. +-|...|+.....+...|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544443 111133344443333333343 244556665665543 3345556666666666666666666666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHc---CC----HHHHHHHHhhCC--C-CChhhHHHHHHHHHhc----CCcHHHHHHHH
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKC---GS----LGSARKLFNFME--N-PDVVSWSSLILGYAQF----GCGDEALKLFT 491 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 491 (579)
++.+.+.. +...|+....++.+. |. .+++..+..++. . .|...|+-+...+... ++..+|.+.+.
T Consensus 167 ~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 167 QLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 66655533 344444444333333 11 234455554433 2 3556677766666652 33456777777
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccC------------------chHHHHHHHHHHH
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVG------------------LVEEGLHLYRIME 529 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 529 (579)
+..+.+ ..+...+..|+..|+... ..++|.++++.+.
T Consensus 246 ~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred Hhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 766543 234567777777776532 2356777777763
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=47.72 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.003 Score=58.64 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
......+.+.++.++|.+.++.+... .|+. ...-.+-.++.+.|++.++..+++...... +.++..|..|.++|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHH
Confidence 33445555555555555555555543 3432 122222334444444444444444444332 2244444444444444
Q ss_pred cCChHHH
Q 043608 347 CSVLCNA 353 (579)
Q Consensus 347 ~~~~~~a 353 (579)
.|+..++
T Consensus 421 ~g~~~~a 427 (484)
T COG4783 421 LGNRAEA 427 (484)
T ss_pred hCchHHH
Confidence 4443333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-06 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP 297 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 297 (579)
.+|+.++.++++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-06 Score=47.27 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00015 Score=73.34 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=110.8
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHH
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSL 473 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l 473 (579)
...+...+..|.......|.+++|..+++...+.... +......+...+.+.+++++|+..+++... |+ ......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4555777777888888888888888888888775422 455566677788888888888888888774 43 3445566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCC
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGC 553 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (579)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|...-|+.+ .++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~------~~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRR------LVD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHH------HHH
Confidence 677788888888888888888732 223667888888888888888888888888764 33333333322 233
Q ss_pred hhHHHHHHHhh
Q 043608 554 VHEAEDFINQM 564 (579)
Q Consensus 554 ~~~A~~~~~~~ 564 (579)
+..-...++++
T Consensus 232 ~~~~~~~~~~~ 242 (694)
T PRK15179 232 LNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHc
Confidence 44455566666
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0027 Score=53.62 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
.|++++|.++|+.+.+.. +.|..++..=+-..-..|+.-+|.+-+....+. +..|...|..+.+.|...|+++.|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 444555555555554442 223333333333333333333333333333322 223444444444444444444444444
Q ss_pred HhhCC
Q 043608 459 FNFME 463 (579)
Q Consensus 459 ~~~~~ 463 (579)
++++.
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0001 Score=59.21 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchH
Q 043608 448 KCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 519 (579)
..++...+...++.+.+ |+. ...-.+...+...|++++|...|+...+....|+ ......+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35666666666666653 222 1222345667788999999999999988753332 224455778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
+|+..++.... -...+..+....++|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999976542 233445677788999999999999998875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.1e-05 Score=59.23 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|...|+.... .+...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 44456667777888888888777663 355667777777888888888888888888753 33566777788888888
Q ss_pred CchHHHHHHHHHHHH
Q 043608 516 GLVEEGLHLYRIMEN 530 (579)
Q Consensus 516 g~~~~a~~~~~~~~~ 530 (579)
|++++|...|+...+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888888775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.03 E-value=8e-05 Score=59.30 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
...+...+...|++++|.+.++.+.. .+...|..+...+...|++++|..++++..+.+ +.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 34444455555555555555555432 233444455555555555555555555554432 22334444455555555
Q ss_pred CchHHHHHHHHHHHH
Q 043608 516 GLVEEGLHLYRIMEN 530 (579)
Q Consensus 516 g~~~~a~~~~~~~~~ 530 (579)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=66.84 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=127.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
++..+-.|.....+.|+.++|..+++...+. .|+ ......+...+.+.+++++|....+........ +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 5778888999999999999999999999886 555 556777888999999999999999999987633 677788888
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
.++.+.|++++|..+|+++.. |+ ...+..+..++...|+.++|...|++..+. ..|....|+.++ ++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 999999999999999999985 33 577888889999999999999999999876 345555665544 44555
Q ss_pred HHHHHHHHHHh
Q 043608 521 GLHLYRIMENE 531 (579)
Q Consensus 521 a~~~~~~~~~~ 531 (579)
-..+++++.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 56667766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=54.02 Aligned_cols=109 Identities=20% Similarity=0.159 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG 516 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 516 (579)
.+.+..+.-+...|+...|.++..+..-||..-|...+.+++..++|++-.++... +-++..|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 34555667778889999999999999889999999999999999999988776432 234578999999999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 517 LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
...+|..++.++. +..-+..|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998887632 2445678888888888876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.5e-05 Score=68.90 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=79.1
Q ss_pred HhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC
Q 043608 107 MIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR 186 (579)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 186 (579)
|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444555677777777777777653 33 34445666666666677777777766543 3345556666666777777
Q ss_pred HHHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043608 187 ILDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEML 229 (579)
Q Consensus 187 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 229 (579)
++.|+.+.++... | +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888777777654 3 44578888888888888888888887765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00038 Score=55.38 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
...+...+...|++++|.+.++++...+ +.+...+..+...+...|++++|...++...+. .+.+...+..+..+|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 3444555566666666666666665543 224455556666666666666666666665542 2333445555666666
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 97 ALGEPESALKALDLA 111 (135)
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=59.78 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=36.8
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLY 124 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (579)
.|++++|.++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+ .|...|.-+-..|...|++++|.-++
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 344444555555444444 33444444444444444444444444333332 34444444444444445555555555
Q ss_pred HHHHH
Q 043608 125 IQMLQ 129 (579)
Q Consensus 125 ~~~~~ 129 (579)
+++.-
T Consensus 178 EE~ll 182 (289)
T KOG3060|consen 178 EELLL 182 (289)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=53.36 Aligned_cols=53 Identities=2% Similarity=-0.105 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 379 HNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
.++...+...++.+........ ......+...+...|++++|...|+.+....
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 4555555555555555421110 1112223344455555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=43.41 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=42.49 Aligned_cols=31 Identities=35% Similarity=0.694 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDREL 295 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 295 (579)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688889999999999999999998888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-05 Score=54.59 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=59.1
Q ss_pred cCCcHHHHHHHHHHHhCCCC-CChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHH
Q 043608 480 FGCGDEALKLFTRMRSLGVS-PNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 557 (579)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+.+++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57889999999999886431 2444566688999999999999999988 32 223 234555668889999999999
Q ss_pred HHHHHh
Q 043608 558 EDFINQ 563 (579)
Q Consensus 558 ~~~~~~ 563 (579)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00082 Score=51.98 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSC 543 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 543 (579)
++..+...+.+.|++++|.+.++++.+.. |+ ...+..+..++.+.|++++|...++.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44556667777888888888888877642 32 23555677778888888888888888775421111 2345666
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..++.+.|+.++|...++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888877
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00041 Score=51.07 Aligned_cols=92 Identities=20% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+. .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455666677777888888877777642 223355666777777777888888877777653 2333356667777777
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 778888887777766
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00049 Score=49.97 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCC-CCChHHHHHHHHHhhccc--------chhhHHHHHHHHHHcCCCCCchhHH
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDREL-LPDGLTVHSLLCACIGRL--------TLYQGMQVHSYIIKMGFDSNVPVCN 338 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (579)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887643 3445678888899889999999999
Q ss_pred HHHHHHHh
Q 043608 339 AILTMYAK 346 (579)
Q Consensus 339 ~l~~~~~~ 346 (579)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.041 Score=50.90 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHH
Confidence 3456777777666666555 567777777777777777777777777663 355555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00054 Score=56.60 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=66.2
Q ss_pred HHhccc--CCCcHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 192 NVFSGI--ARKDVTSWGSMIAAFSK-----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 192 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
..|+.. ..++-.+|..++..|.+ .|.++=....++.|.+-|+ +.|.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv---------------------------~kDL 87 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV---------------------------EKDL 87 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC---------------------------cccH
Confidence 344444 34566777777777764 5788888888999999999 6666
Q ss_pred hhHHHHHHHHHcC----------------CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc
Q 043608 265 ASWNALIAGVASH----------------SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 265 ~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 314 (579)
.+|+.|++.+=+. .+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 88 ~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 88 EVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666665432 2345677777777777777777777777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00061 Score=63.92 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=77.8
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhh
Q 043608 396 QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT--GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----PDVVS 469 (579)
Q Consensus 396 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 469 (579)
+.+.+...+..+++.+....+.+.+..++.+.+.. ....-+.+..++++.|.+.|..+++..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777788777777778888777777643 2222234445677777777777777776665443 67777
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776666666555555655555555543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.5e-05 Score=55.06 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHH
Q 043608 12 QNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARM 91 (579)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 91 (579)
+|+++.|+.+++++....+..++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677778888777777523222344455567777777778777777777 3333 2233444455677777777777777
Q ss_pred hhc
Q 043608 92 GFD 94 (579)
Q Consensus 92 ~~~ 94 (579)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.004 Score=56.54 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-----Chh-HHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCCC--cc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-----NLV-TLVGVLTACSHVGLVEEGLHLYRIMENEY-GIIPT--RE 539 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~ 539 (579)
.+..+...+.+.|++++|.++|++....-... +.. .+...+-++...||...|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34556677888999999999999887653322 111 23333445667799999999999887431 22222 22
Q ss_pred hhHHHHHHHHh--cCChhHHHHHHHhhcCCCCh
Q 043608 540 HCSCVVDLLAR--AGCVHEAEDFINQMACDADI 570 (579)
Q Consensus 540 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 570 (579)
....|+.++-. ...+++|+.-++++. +.|.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 45566777632 234555666666663 3443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=61.90 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 363 NADSVSWNSIIAACLQHNQAEELFRLFSRMLAS--QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 363 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
+.+......++..+....+.+.+..++.+.+.. ....-..|...+++.|...|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 346677888888888888899999999998776 233445677899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhc
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN----PDVVSWSSLILGYAQF 480 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 480 (579)
.|++.+.+.|++..|.++...|.. .+..++..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999887762 4555665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.048 Score=53.24 Aligned_cols=161 Identities=9% Similarity=-0.013 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHH-hCCC--------CChhHHHHHHHHHHcc
Q 043608 13 NLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILL-SKCQ--------PDVVLQNHILNMYGKC 83 (579)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~l~~~~~~~ 83 (579)
=..++|.++.+ ..|.+..|..+.......-.++-|...|-+... .|+. .+...-.+=+.+| -
T Consensus 677 vgledA~qfiE-------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~ 747 (1189)
T KOG2041|consen 677 VGLEDAIQFIE-------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--Y 747 (1189)
T ss_pred hchHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--h
Confidence 34455555543 457788888887776666666666666544321 1110 0111112222222 4
Q ss_pred CChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCC----cccHHHHHHHhcCCCcchhHHHHH
Q 043608 84 GSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPG----QFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 84 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
|++++|++++-++.++|. -|..+.+.|+|-...++++.= |-..| ...++.+...++....++.|.++|
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988887654 244455667776666555431 11111 134666666666666677776666
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR 199 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (579)
..--.. ...+.++.+..++++-..+-+.+++
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe 850 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE 850 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc
Confidence 542111 1234444454555554444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=47.52 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHhHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCchhHHHH
Q 043608 371 SIIAACLQHNQAEELFRLFSRMLASQI-KPDHITFNDVMGACAKMA--------SLEMVTQLHCYITKTGLAFDVFVMNG 441 (579)
Q Consensus 371 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (579)
..|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666889999999999999998 889999999998876543 24456778888888889999999998
Q ss_pred HHHHHHH
Q 043608 442 LMDIYIK 448 (579)
Q Consensus 442 l~~~~~~ 448 (579)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.096 Score=51.28 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-----cHhhHHHHHHHHHhcCChHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-----DVTSWGSMIAAFSKLGYELEALC 223 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 223 (579)
.|++++|.++|-++-+.. ..+..+.+.|++-...++++.-... -..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677776665554433 2355566667776666666542221 12356666666666666666666
Q ss_pred HHHH
Q 043608 224 HFNE 227 (579)
Q Consensus 224 ~~~~ 227 (579)
.+..
T Consensus 818 yY~~ 821 (1189)
T KOG2041|consen 818 YYSY 821 (1189)
T ss_pred HHHh
Confidence 6654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=49.02 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=38.7
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 513 SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
.+.|++++|.++|+++... .+-+......+..+|.+.|++++|.++++++ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3457777777777777653 2224555666777777777777777777777 4456655555443
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00044 Score=62.43 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-cCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK-CGSLGSARKLFNFMEN---PDVVSWSSLILGY 477 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 477 (579)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|-.....-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356677777788888888888888887443 2233444444333223 4566668888887774 5667788888888
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCh---hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPNL---VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++... .|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 8888888888888888765 33333 37888888888888888888888888754 44444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.051 Score=47.87 Aligned_cols=176 Identities=13% Similarity=0.026 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH---HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHIT---FNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK- 448 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 448 (579)
...+...|++++|.+.|+++...-..+ ... ...+..++.+.++++.|...+++..+........-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334455666777777777666642211 111 123445566666777777777666654433222222222222221
Q ss_pred -c---------------CC---HHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 449 -C---------------GS---LGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 449 -~---------------~~---~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
. .+ ...|...|+.+ +.-|=...-..+|...+..+.+. .-..-+ .+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHH
Confidence 0 01 11222333332 22222222233444333333221 111111 455
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 510 TACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+-|.+.|.+..|..-++.+.+.+.-.| ..+....++++|.+.|..++|.++...+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 667888888888888888887653333 2335567788888899999988887665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=49.39 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CChhHHHHHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS--PNLVTLVGVLT 510 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~ 510 (579)
+..+...+.+.|++++|.+.++.+.+ |+ ...+..+..++.+.|+++.|...++++...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666665542 22 124445666677777777777777777654211 11335566666
Q ss_pred HhhccCchHHHHHHHHHHHHh
Q 043608 511 ACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 677777777777777777754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00096 Score=57.84 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=71.6
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 521 (579)
..+.+++.+|...|.+..+ .|.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 5677888888888887764 45666777778888888888888887777763 454 44888888888888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
.+.|++.. .+.|+-.+|..=++
T Consensus 169 ~~aykKaL---eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhh---ccCCCcHHHHHHHH
Confidence 88888776 56777776654333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.064 Score=51.92 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChh-----------
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVV----------- 468 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----------- 468 (579)
.+...+...+.+...+..|-++|.+|-+. .++++.....+++.+|..+-+...+ ||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 34444444455555666666676665432 2455666677777777777776664 3321
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
-+.-.-.+|.+.|+-.+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122234667777778888888777654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00048 Score=50.67 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=58.6
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|..+...+...|++++|+..++.+.+. .+.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 344556667777777777777777653 22333455566666677777777777777776654 344456666666666
Q ss_pred ccCChhhHHHhhcCC
Q 043608 82 KCGSLEDARMGFDKM 96 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~ 96 (579)
..|++++|...++..
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 667777766665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.049 Score=43.90 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=78.7
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHH
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVSWSS 472 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 472 (579)
.|+...-..+..++...|+..+|...|++...--+..|....-.+.++....+++.+|...++++-+ ..+.+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555556566655555555443444555555555556666666666666665542 12233445
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+.+.|...|+...|..-|+...+. -|+...-......+.++|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 567788888888888888888875 56555444445556778877776665555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0043 Score=48.99 Aligned_cols=92 Identities=10% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
.-.+...+...|++++|.++|+.+.. | +..-|-.|..++-..|++++|+..|......+ +-|+.++-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33445556677777777777776652 3 34455666666777777777777777777654 23466777777777777
Q ss_pred CchHHHHHHHHHHHHh
Q 043608 516 GLVEEGLHLYRIMENE 531 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~ 531 (579)
|+.+.|.+-|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.19 Score=49.88 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=90.8
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 431 GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ++.-|.-.+.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 3334444555666677888999999999999999999999999999999999988877665543 2566777889
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+|.+.|+.++|.+++-+.. |.+ ..+.+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 9999999999999887654 222 5678899999999887654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=59.77 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
...+...|++++|...|+++.+ .+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4556678899999999988874 345677778888889999999999999988853 234667888888889999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchh
Q 043608 520 EGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
+|...|++..+. .|+....
T Consensus 88 eA~~~~~~al~l---~P~~~~~ 106 (356)
T PLN03088 88 TAKAALEKGASL---APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHh---CCCCHHH
Confidence 999999988853 5554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.01 Score=53.99 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDR----ELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYII 326 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (579)
..|......|-..|++++|.+.|....+. +-..+ ...|......+ +..+++.|...++...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence 45677777888888888888888766432 11111 11222222333 3336666666655544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.026 Score=49.71 Aligned_cols=174 Identities=11% Similarity=0.008 Sum_probs=99.6
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc--
Q 043608 341 LTMYAKCSVLCNALLVFKEL-GKNADSV----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-- 413 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 413 (579)
...+...|++++|.+.|+.+ ..-|+.. ..-.+..++.+.++++.|...+++..+....-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 34445677888888888776 2223222 1234566777888888888888888776322222233333333321
Q ss_pred c---------------CCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 043608 414 M---------------ASL---EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLIL 475 (579)
Q Consensus 414 ~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 475 (579)
. .+. ..|...++.+.+. |=...-..+|...+..+...=...--.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111 2333444444432 222223334443333332111111123456
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCC--CCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLGV--SPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
-|.+.|.+..|..-++.+.+.-. +.....+..++.+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 68889999999999999987621 1124467788899999999999988877654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.15 Score=47.31 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhH-HHHHHHHH
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSW-SSLILGYA 478 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~ 478 (579)
.|...+....+..-.+.|..+|.+..+.+ ..+++.++++++..++ .|+...|.++|+--.. ||...| +-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45555666666667777777777777777 5667777777777554 4667777777775442 555444 34555566
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++-+.|..+|+..++. +..+ ...|..+|.--..-|+...+..+=++|...
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777777777777755543 2333 446777777777777777777777766643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0078 Score=54.44 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA-CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887543 2223333333333 33356667788888887764 44567778888888
Q ss_pred HHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 446 YIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
+.+.++.+.|..+|++... +. ...|...+.--.+.|+.+.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 8888888889888888874 33 347888888888889999888888888874 44444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0051 Score=51.15 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHH
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGV 508 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 508 (579)
...+..+...+...|++++|...|++..+ |+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34556666677777778887777776652 22 245666677777777777777777777764 33 34455566
Q ss_pred HHHhhccCc
Q 043608 509 LTACSHVGL 517 (579)
Q Consensus 509 ~~~~~~~g~ 517 (579)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666666665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=48.83 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 33456666666777777777777777765432222 245666666677777777777777776654322 344455555
Q ss_pred HHHHHcCCHHHHH
Q 043608 444 DIYIKCGSLGSAR 456 (579)
Q Consensus 444 ~~~~~~~~~~~A~ 456 (579)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5666655544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.007 Score=46.00 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---c-chhHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---R-EHCSCVVD 546 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~l~~ 546 (579)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.... .|+ . .....+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHH
Confidence 34556677888888888888888776554 335666777778888888888888877754 233 1 12223344
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
++...|+.++|.+++-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 566778888888776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.011 Score=46.73 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDL 547 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (579)
..-.+...+...|++++|.++|+-+... .| +..-|-.|.-+|-..|++++|+..|...... . +-++..+..+..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHH
Confidence 3334445555666666666666666653 33 3334555556666666666666666666543 2 2345556666666
Q ss_pred HHhcCChhHHHHHHHhh
Q 043608 548 LARAGCVHEAEDFINQM 564 (579)
Q Consensus 548 ~~~~g~~~~A~~~~~~~ 564 (579)
+...|+.+.|++.|+..
T Consensus 113 ~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 113 YLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.096 Score=52.47 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCcHhHHHHHHHHHhc
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRL----FSRMLASQIKPDHITFNDVMGACAK 413 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 413 (579)
..++..+.+..+.+.+..+.+..+.. ++..|-.+++.+++.+.++.-.+. ++.......-|.. .+++.+++
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~Lak 783 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQILAK 783 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHHHhc
Confidence 45677778888888888888888877 888898999999888865554444 3333333333333 34455555
Q ss_pred cC
Q 043608 414 MA 415 (579)
Q Consensus 414 ~~ 415 (579)
.+
T Consensus 784 n~ 785 (933)
T KOG2114|consen 784 NG 785 (933)
T ss_pred CC
Confidence 44
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.28 Score=49.41 Aligned_cols=149 Identities=12% Similarity=-0.014 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCChhhHHHhhcCCCCCCeee---hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC
Q 043608 72 LQNHILNMYGKCGSLEDARMGFDKMPQRNVVS---WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG 148 (579)
Q Consensus 72 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 148 (579)
....-+..+.+...++-|..+-+.-.-+.... ......-+.+.|++++|..-|-+-+.. +.| ..+|.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34455666667777777777765544221111 122223345678888888877776543 222 235566666
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH-hhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV-TSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..+...-..+++.+.+.|+.. ..--+.|+.+|.+.++.+...+..+...+... ......+..+.+.+-.++|..+-..
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 666666677777777777643 33335678888888888887777766652211 1234455555666666666554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0061 Score=54.04 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCV 544 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 544 (579)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.+.-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334556666666666666664 2332 3455566666666777777777766665422111 12334445
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
..++...|+.++|..+++++
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666777777766666
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.021 Score=45.87 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCChhHHHHHHHHHHccCChhhHHHhhcCCCC----CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCC-CCCcccHHH
Q 043608 67 QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ----RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGV-MPGQFTFGS 141 (579)
Q Consensus 67 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ 141 (579)
-|++...-.|...+.+.|+..+|...|++... .|....-.+.++....+++..|...++.+.+..- .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566666667777777777777766542 3444555555566666777777777776655420 012334455
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHh
Q 043608 142 IIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVF 194 (579)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (579)
+.+.+...|....|..-|+.....-+.|....+ ....+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHH
Confidence 566666777777777777776665443333332 233455666665554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=53.30 Aligned_cols=137 Identities=9% Similarity=-0.093 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCC--ChhHHHHHHHHHHccCChhhHHHh
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQP--DVVLQNHILNMYGKCGSLEDARMG 92 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 92 (579)
+..+...+..+.+..+.......+..+...+...|++++|...++........+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455555553332333345566777777777888888888888887654222 234677788888888888888888
Q ss_pred hcCCCC--C-CeeehhHHhhhhh-------cCCChhhHHHHHHHHHHC---CCCCCcccHHHHHHHhcCCCc
Q 043608 93 FDKMPQ--R-NVVSWTAMIAGCS-------QNYQENDAIKLYIQMLQS---GVMPGQFTFGSIIKACSGLGS 151 (579)
Q Consensus 93 ~~~~~~--~-~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~li~~~~~~~~ 151 (579)
+++..+ | ...++..+...+. +.|+++.|+..+++.... .+..++..+..+...+...|+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 877653 2 2334555555555 777877665555543221 122344444444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.39 Score=47.80 Aligned_cols=124 Identities=8% Similarity=-0.066 Sum_probs=71.2
Q ss_pred HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHh-cc-CCChhHHHHHHHHHhc
Q 043608 106 AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKS-EH-GSHLIAQNALIAMYTK 183 (579)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~ 183 (579)
.++.-+...+.+..|.++-+.+...-..- ...|......+.+..+. .-..+++.+.+. +. ..+...|..+.+....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 45566667777888888777664322121 34455555555444211 112223333221 11 1344566777777778
Q ss_pred CCCHHHHHHHhcccCCC--------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 184 FDRILDARNVFSGIARK--------DVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
+|+.+-|..+++.=+.. +...+...+.-+.+.|+.+-...++-.+..+
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 88888888888764432 2334556667777788877777777666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0066 Score=50.39 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----------------ccchhhHH
Q 043608 261 SPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----------------RLTLYQGM 319 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~~~~~~a~ 319 (579)
..+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ ..+-+-++
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5777888888888865 47788888899999999999999999999998754 23445688
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999888876554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0068 Score=56.97 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=80.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcH
Q 043608 408 MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 484 (579)
...+...|+++.|.+.+++..+.... +...+..+..+|.+.|++++|...++.+.+ | +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 45667889999999999999986643 677888889999999999999999998874 3 5667888889999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999985 56655444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0029 Score=42.89 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043608 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRD 292 (579)
Q Consensus 213 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (579)
.+.|++++|+++|+++.+.. +.+...+..+..++.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788999999999988774 45677777888999999999999999998887
Q ss_pred CCCCCChHHHHHH
Q 043608 293 RELLPDGLTVHSL 305 (579)
Q Consensus 293 ~g~~p~~~~~~~l 305 (579)
. .|+...+..+
T Consensus 54 ~--~~~~~~~~~l 64 (68)
T PF14559_consen 54 Q--DPDNPEYQQL 64 (68)
T ss_dssp G--GTTHHHHHHH
T ss_pred H--CcCHHHHHHH
Confidence 6 5665444443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=41.99 Aligned_cols=57 Identities=19% Similarity=0.066 Sum_probs=34.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666777777777766653 113446666666666667777777666666543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.044 Score=54.12 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
+...|.++.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCchH
Confidence 3455666655556678888888888888875 3677777778888888888888888887776 345665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0015 Score=43.84 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+...+...|++++|...|+++.+. .+-+...+..+..++...|++++|..+++++ ...|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456788999999999999999964 2336678889999999999999999999998 45565
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.029 Score=46.48 Aligned_cols=62 Identities=5% Similarity=0.003 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKP--DHITFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555666666666666655432111 122445555555555666666666555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=56.28 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCC-CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 484 DEALKLFTRMRSLG-VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 484 ~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
..+.+..++..... ...++..|..+.-.+...|++++|...+++.... .|+...|..+.+.+...|+.++|.+.++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443321 2334567777777777789999999999999854 5788899999999999999999999998
Q ss_pred hh-cCCCChhHh
Q 043608 563 QM-ACDADIVVW 573 (579)
Q Consensus 563 ~~-~~~~~~~~~ 573 (579)
+. ...|...+|
T Consensus 478 ~A~~L~P~~pt~ 489 (517)
T PRK10153 478 TAFNLRPGENTL 489 (517)
T ss_pred HHHhcCCCCchH
Confidence 87 444544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0096 Score=45.77 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
..++..++.++++.|+++....+++..-..|+. +-...+. --......|+..++.+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666677777766666666554332211 0000000 112334578899999999999999
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCC
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGC 553 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (579)
|++..|.++++.+.+.++++.+..+|..|++-....-+
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999988888899888877654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.29 Score=47.73 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 043608 453 GSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY 532 (579)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 532 (579)
+-+.++-.++...+..+...+..-+.+...+.-|.++|..|-+. ..++..+...++|++|..+-+..-
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP--- 800 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP--- 800 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---
Confidence 33344444444445555555555556667777788888777542 256677788888888877766554
Q ss_pred CCCCCcc-----------hhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPTRE-----------HCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.||.. -+...-++|.++|+..+|.++++++
T Consensus 801 e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3444432 2334456788889889999988888
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.044 Score=41.70 Aligned_cols=103 Identities=12% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTGLA--FDVFVMNGLMDIYIK 448 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 448 (579)
..++-..|+.++|..+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445566777777777777777665544 224445556666677777777777666643211 011222222334555
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHH
Q 043608 449 CGSLGSARKLFNFMENPDVVSWSSLIL 475 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~~~~~~~l~~ 475 (579)
.|+.++|.+.+-...-++...|.--|.
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666554444333333333333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.053 Score=46.34 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANE 282 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 282 (579)
...+.++..+.-.|.+.-.+..+++..+... +.++.....|++.-.+.|+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~---------------------------e~~p~L~s~Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP---------------------------EQEPQLLSGLGRISMQIGDIKT 230 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC---------------------------cccHHHHHHHHHHHHhcccHHH
Confidence 3445666666667777777777777766543 4555666666777777777777
Q ss_pred HHHHHHHHHhCCCCCChHHH
Q 043608 283 AMSLFSEMRDRELLPDGLTV 302 (579)
Q Consensus 283 a~~~~~~m~~~g~~p~~~~~ 302 (579)
|...|+...+..-..+..++
T Consensus 231 a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHHHHhhhhccch
Confidence 77777766544333333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0061 Score=41.41 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC-chHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG-LVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 530 (579)
+...|..+...+...|++++|+..|++..+.+ +-+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777753 224556777777777777 67777777777664
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=51.21 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=82.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 486 (579)
-+.+.+++.+|...|.+.++... -|...|..-..+|.+.|.++.|.+-.+....-| ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 46778999999999999998753 377778888999999999999999999888644 46788999999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
++.|++.++ +.|+..+|..=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999988 6888777754443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.1 Score=44.76 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 557 (579)
+...|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566666666666666666654221111 12344556666666665543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.48 Score=43.54 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=15.0
Q ss_pred cHHHHHHHhcCCCcchhHHHHHH
Q 043608 138 TFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
+|..+.......|+.+.|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45566666667777777766654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.042 Score=48.28 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=82.4
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC---CcHHHHHHHHHHHhCCCCCChhHHH
Q 043608 433 AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG---CGDEALKLFTRMRSLGVSPNLVTLV 506 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~ 506 (579)
+-|..-|-.|..+|...|+.+.|..-|.+..+ ++...+..+..++..+. ...++..+|+++.... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 44788899999999999999999999987764 56667777776655432 4578889999998863 33566777
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 507 GVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
.|...+...|++.+|...|+.|.+. -|.......++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~---lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL---LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---CCCCCchHHHHH
Confidence 8888899999999999999999863 343344444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.14 Score=45.08 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc---cCchHHHHHHHHHHHHhhCCCC-Ccchh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH---VGLVEEGLHLYRIMENEYGIIP-TREHC 541 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 541 (579)
|...|-.|...|...|+++.|..-|.+..+.. .+++..+..+..++.. ..+..++..+|+++.+. .| +....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHHH
Confidence 34445555555555555555555555444421 1223333333333321 11244444455544432 22 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHhh
Q 043608 542 SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|...+...|++.+|...|+.|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 33444444555555555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.65 Score=42.52 Aligned_cols=295 Identities=15% Similarity=0.083 Sum_probs=183.6
Q ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHh--hcccchhhHHHHHHHHHHcCCCCCchh--HHH
Q 043608 266 SWNALIAGVAS--HSNANEAMSLFSEMRDRELLPDGLTVHSLLCAC--IGRLTLYQGMQVHSYIIKMGFDSNVPV--CNA 339 (579)
Q Consensus 266 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 339 (579)
.|..|-.++.- .|+-..|.+.-.+-.+. +..|..-.-.++.+- .-.|+.+.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555543 56777776666554322 445555566666543 4568999999999988753 22211 223
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHh--HHHHHHHHHh--
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-GKNAD-SVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHI--TFNDVMGACA-- 412 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~-- 412 (579)
|.-.-.+.|+.+.|..+-++. +..|. ...+...+...|..|+|+.|+++++.-.... +.++.. .-..++.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333345678888888888776 33333 4467888999999999999999998765543 344432 2222332221
Q ss_pred c-cCChHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHH
Q 043608 413 K-MASLEMVTQLHCYITKTGLAFDVFV-MNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 413 ~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
. ..+...|...-.+..+ +.|+..- --.-..++.+.|+..++-.+++.+-+ |.+..+.. ..+.+.|+. +..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gdt--a~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGDT--ALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCCc--HHH
Confidence 1 1234445544444333 4454332 22335678899999999999998874 55554433 333455543 333
Q ss_pred HHHHHHhC-CCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc-CChhHHHHHHHhhc
Q 043608 489 LFTRMRSL-GVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA-GCVHEAEDFINQMA 565 (579)
Q Consensus 489 ~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 565 (579)
-+++..+. .++|| ......+..+....|++..|..--+... ...|....|..|.+.-... ||-.++.+++-+--
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 33333221 14555 5577788888999999999988877776 4578888888888887544 99999999998874
Q ss_pred CCCChhHh
Q 043608 566 CDADIVVW 573 (579)
Q Consensus 566 ~~~~~~~~ 573 (579)
..|..-.|
T Consensus 391 ~APrdPaW 398 (531)
T COG3898 391 KAPRDPAW 398 (531)
T ss_pred cCCCCCcc
Confidence 34433333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.73 Score=43.03 Aligned_cols=422 Identities=12% Similarity=0.076 Sum_probs=221.0
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-
Q 043608 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK- 200 (579)
Q Consensus 122 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 200 (579)
.+-++..+. +-|..+|-.|+.-+...+..++..+++++|..- .+.-..+|...+.+-....++.....+|.+-...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444432 567788999999999999999999999988653 2333556777777777778888888888776554
Q ss_pred -cHhhHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHH--------------HHHHhhc
Q 043608 201 -DVTSWGSMIAAFSKLGYE------LEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNF--------------ARILFNE 258 (579)
Q Consensus 201 -~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~--------------~~~~~~~ 258 (579)
+...|...+..-.+.... ....+.|+-....-++.|-.. .|...+...... .+..+.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 566777766654443311 112233333333222244332 233322221111 2223333
Q ss_pred CCC-C---------ChhhHHHHHHH-----HHc--CCChHHHHHHHHHHHh--CCCCC----ChHHHHHHHHH-hh----
Q 043608 259 IDS-P---------DLASWNALIAG-----VAS--HSNANEAMSLFSEMRD--RELLP----DGLTVHSLLCA-CI---- 310 (579)
Q Consensus 259 ~~~-~---------~~~~~~~li~~-----~~~--~~~~~~a~~~~~~m~~--~g~~p----~~~~~~~ll~~-~~---- 310 (579)
+.. | |-..|..=++. +.. .--+-.|...+++... .|+.. +..+++.+-+. +.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 221 1 11111111111 110 1113456666666542 24332 22333332110 00
Q ss_pred -----c------ccc-h-hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH-cCCCCChhhHHHHH-HH
Q 043608 311 -----G------RLT-L-YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKE-LGKNADSVSWNSII-AA 375 (579)
Q Consensus 311 -----~------~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~-~~ 375 (579)
+ .++ . +...-++++.... +...+.+|-.--..+...++-+.|+...+. +...|+ .+..+ ..
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ 342 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEY 342 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHH
Confidence 0 000 0 0111112222111 111222333333333445566666655544 233334 22222 22
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh---ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA---KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
|-...+.+.+...|+...+. ...-...+.+-+ ..|+++.-.+++-+-+. --..+|.+++....+..-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhH
Confidence 33344445555555443221 000011111111 12333333332211111 2345677888888888889
Q ss_pred HHHHHHHhhCCC-----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH-HHHHHHhhccCchHHHHHHHH
Q 043608 453 GSARKLFNFMEN-----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL-VGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 453 ~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+.|..+|-++.+ +++..+++++.-++ .|+...|.++|+--..+ -||...| .-.+..+...++-+.|..+|+
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999998874 67888888887665 47888999999876654 4554433 355666778899999999999
Q ss_pred HHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 527 IMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 527 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....+ +..+ ..+|..+++.=..-|+...|..+-++|
T Consensus 491 tsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 491 TSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 66653 2333 568899999888999998888777777
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.022 Score=45.84 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCCcchh
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN----EYGIIPTREHC 541 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 541 (579)
...++..+...|++++|..+.+++.... +.|...|..++.+|...|+...|.+.|+++.+ ..|+.|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445666777888888888888888753 34666888888888888888888888877653 34777877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.48 Score=40.57 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=79.7
Q ss_pred HHHHHhcCChHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 341 LTMYAKCSVLCNALLVFKEL----GK-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
...+...|++.+|.+.|+.+ +. +--....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34455566677777776665 11 11222344556666666777777776666655421111112222222221111
Q ss_pred ChHHHHHHHHHHHHcCCCC-----chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAF-----DVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
...... ....++ -...+..++.-|=...-..+|...+..+.+.=...--.+...|.+.|.+..|..-+
T Consensus 92 ~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 92 QIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred hCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 111000 000000 01223333333333333344433333332111111122456688899999999999
Q ss_pred HHHHhCCCCCC----hhHHHHHHHHhhccCchHHHH
Q 043608 491 TRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 491 ~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 522 (579)
+.+++. -|+ ......++.++.+.|..+.+.
T Consensus 165 ~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 998886 344 235677888888888877543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=39.24 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC-C
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS-N 279 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~ 279 (579)
++..|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++.+.| +
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----------------------------p~~~~~~~~~g~~~~~~~~~ 53 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----------------------------PNNAEAYYNLGLAYMKLGKD 53 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----------------------------TTHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCCHHHHHHHHHHHHHhCcc
Confidence 45678888888999999999999999988875 456778888888888888 6
Q ss_pred hHHHHHHHHHHHh
Q 043608 280 ANEAMSLFSEMRD 292 (579)
Q Consensus 280 ~~~a~~~~~~m~~ 292 (579)
+++|++.++...+
T Consensus 54 ~~~A~~~~~~al~ 66 (69)
T PF13414_consen 54 YEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999998887765
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=39.26 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..|.+.+++++|.++++++...+ +.+...+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666766666666642 223445555666666666777776666666643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.039 Score=48.99 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGV 508 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l 508 (579)
|..-+..+.+.|++++|...|+.+.+ |+. ..+--+...|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 44444444555677777777766653 433 34556677778888888888888888764 232 3344455
Q ss_pred HHHhhccCchHHHHHHHHHHHHh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677888888888888888865
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=44.47 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=39.5
Q ss_pred CCCCCcchhHHHHHHHHhcCChhHHHHHHHhh----cCCCChhHhhhhhc
Q 043608 533 GIIPTREHCSCVVDLLARAGCVHEAEDFINQM----ACDADIVVWKSLLA 578 (579)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 578 (579)
...|+..+..+++.+|+..|++..|.++++.. +..-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 67788999999999999999999999999988 55556888887763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.013 Score=40.38 Aligned_cols=62 Identities=15% Similarity=-0.070 Sum_probs=50.3
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhH
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVV 572 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 572 (579)
-..|.+.+++++|.+.++.+... .+.++..+.....++.+.|++++|.+.+++. ...|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 35678999999999999999964 2345667788899999999999999999998 44555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.24 Score=45.49 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=24.8
Q ss_pred HhcCCcHHHHHHHHHHHhC---CCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSL---GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3455555555555555432 122233344444444555555555555544443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.048 Score=47.32 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-chhHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-EHCSCVV 545 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 545 (579)
.|+.-+. +.+.|++..|..-|...++....- ....+-.|..++..+|++++|..+|..+.+.++-.|.. +.+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555544 345677999999999888863211 13356678888899999999999999988876555543 6777888
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
.+..+.|+.++|..+|+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8888999999999998888
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.031 Score=50.87 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=39.9
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC---CChHHHHHHHHHhhcccchhhHHHHHH
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELL---PDGLTVHSLLCACIGRLTLYQGMQVHS 323 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 323 (579)
.-+|+.|+......+|+...+.|.. .-+..|..+-++|.-.+++++|.++..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4578999999999999999988732 223456677778888888888887754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=41.00 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhC-CC---CC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYG-II---PT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+++.+...|...|++++|+..+++..+... .. |. ..++..+..+|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566667777777777777777776654311 11 11 335666777777778888877777664
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.42 Score=41.10 Aligned_cols=128 Identities=10% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH-----H
Q 043608 369 WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL-----M 443 (579)
Q Consensus 369 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 443 (579)
.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...++...+..-..+....+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34556666667788888888888888766667777777888888888888888888877754434443333333 3
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 444 DIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
..|.-.+++.+|...+.++.. .|+..-|.-.-+..-.|+..+|++..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556677777777777663 33444444444445567778888888888775
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.037 Score=50.45 Aligned_cols=128 Identities=10% Similarity=-0.021 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHH----cCCC-CCchhHHHHHHHHHhcCChHHHHHHHHHc-------CCC-CChh
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIK----MGFD-SNVPVCNAILTMYAKCSVLCNALLVFKEL-------GKN-ADSV 367 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~~ 367 (579)
.|..+-+.|.-.|+++.++...+.-++ .|-+ .....+..+.+++.-.|+++.|.+.|+.. +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444455556677777665544322 2211 12234556667777777777777777642 333 2334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLA----SQ-IKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+..++...|.-..++++|+..+.+-.. .+ ..-....+.++..++...|..++|..+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555667777777777777776655322 11 22345567778888888888887777665544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.057 Score=46.62 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHhcccC--CCcHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC
Q 043608 190 ARNVFSGIA--RKDVTSWGSMIAAFSK-----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP 262 (579)
Q Consensus 190 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (579)
.+..|.... ++|-.+|-+.+..+.. .++++-....++.|.+-|+ +.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV---------------------------er 105 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV---------------------------ER 105 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc---------------------------hh
Confidence 345555555 5677788888877754 4677777788899999999 55
Q ss_pred ChhhHHHHHHHHHcCC----------------ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc
Q 043608 263 DLASWNALIAGVASHS----------------NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 314 (579)
|..+|+.|++.+-+.. +-+=+++++++|...|+.||..+-..+++++.+.+-
T Consensus 106 Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 106 DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 5666665555544322 223356666666666666666666666666665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.036 Score=44.63 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
+...++..+...|++++|.++.+.+.... +-+...|..+|.++...|+...|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d----------------------------P~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD----------------------------PYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS----------------------------TT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC----------------------------CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45567778888999999999999998875 56788999999999999999999
Q ss_pred HHHHHHHHh-----CCCCCChHH
Q 043608 284 MSLFSEMRD-----RELLPDGLT 301 (579)
Q Consensus 284 ~~~~~~m~~-----~g~~p~~~~ 301 (579)
.+.|+.+.. .|+.|+..+
T Consensus 116 ~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 116 LRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHHHhCcCcCHHH
Confidence 999988753 377776655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.78 Score=42.37 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=93.0
Q ss_pred HHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH---HHH-------
Q 043608 342 TMYAKCSVLCNALLVFKELGKNADSVSWNSIIAA--CLQHNQAEELFRLFSRMLASQIKPDHITFND---VMG------- 409 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~------- 409 (579)
.++...|+.++|.+.--.+..--....+...+++ +.-.++.+.+...|++.... .|+...-.. ...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 4556678888877665554222123334444444 33467788888888887665 454432221 111
Q ss_pred ---HHhccCChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHhc
Q 043608 410 ---ACAKMASLEMVTQLHCYITKT---GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSL---ILGYAQF 480 (579)
Q Consensus 410 ---~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~ 480 (579)
-..+.|++..|.+.+.+.+.. +..++...|.....+..+.|+.++|..-.+...+-|....-.+ ..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 234677788888888777633 3345566666666677778888888887777776554332222 2345566
Q ss_pred CCcHHHHHHHHHHHhC
Q 043608 481 GCGDEALKLFTRMRSL 496 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~ 496 (579)
++|++|++-+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7778888877777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.2 Score=40.94 Aligned_cols=291 Identities=13% Similarity=0.016 Sum_probs=148.2
Q ss_pred hhHHhhhhhc--CCChhhHHHHHHHHHHCCCCCCcccHHHHHHH--hcCCCcchhHHHHHHHHHHhccCCChhH--HHHH
Q 043608 104 WTAMIAGCSQ--NYQENDAIKLYIQMLQSGVMPGQFTFGSIIKA--CSGLGSVCLGRQLHAHVIKSEHGSHLIA--QNAL 177 (579)
Q Consensus 104 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 177 (579)
|..|-.++.. .|+-..|.++-.+..+. +..|......++.+ ..-.|+.+.|.+-|+-|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444432 45555565555544321 22344444444433 23456777777777766542 11111 1122
Q ss_pred HHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI 254 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~ 254 (579)
.-.--+.|+.+.|++.-++.-.. -...+...+...+..|+++.|+++++.-....++.++...-.-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r----------- 229 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR----------- 229 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH-----------
Confidence 22334567777777766554432 3356777888888888888888888877766543333221110
Q ss_pred HhhcCCCCChhhHHHHHHHHH---cCCChHHHHHHHHHHHhCCCCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 255 LFNEIDSPDLASWNALIAGVA---SHSNANEAMSLFSEMRDRELLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 255 ~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
..|+.+-. -..+...|.+.-.+.. .+.||..-- .....++.+.|+..++-.+++.+-+...
T Consensus 230 -------------AvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 230 -------------AVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred -------------HHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 11111100 0122333443333322 245554322 2233566777777777777777776654
Q ss_pred CCCchhHHHHHHHHHhcCChHH--HH--HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCN--AL--LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND 406 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 406 (579)
.|+. . .+..+.+.|+... .. +-+..|... +..+.-.+..+-...|++..|..--+..... .|....|..
T Consensus 295 HP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lL 367 (531)
T COG3898 295 HPDI--A--LLYVRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLL 367 (531)
T ss_pred ChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHH
Confidence 4432 2 2222344444221 11 122333333 4555556666666677777666555554443 566666666
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHcC
Q 043608 407 VMGACA-KMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 407 l~~~~~-~~~~~~~a~~~~~~~~~~~ 431 (579)
|...-. ..|+-.++.+.+.+..+.-
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 655443 3477777777776666543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=40.32 Aligned_cols=160 Identities=12% Similarity=-0.012 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-C--ChhhHHHHHHH
Q 043608 403 TFNDVMGACAKMASLE---MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-P--DVVSWSSLILG 476 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~ 476 (579)
++..++.++...+..+ +|..+++.+...... .+.++-.-++.+.+.++.+++.+.+.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 3445555555555433 344444444322211 223333334455556666777766666653 1 22344444444
Q ss_pred HH--hcCCcHHHHHHHHHHHhCCCCCChh-HHH----HHHHHhhccC------chHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 477 YA--QFGCGDEALKLFTRMRSLGVSPNLV-TLV----GVLTACSHVG------LVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 477 ~~--~~~~~~~a~~~~~~m~~~~~~p~~~-~~~----~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+. .......|...+..+....+.|... ... ..+......+ ..+...++++...+..+-+.+..+-.+
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 42 1233456666666666554555442 111 1111122221 245555566655544344445444333
Q ss_pred H-------HHHHHhcCChhHHHHHHHh
Q 043608 544 V-------VDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 544 l-------~~~~~~~g~~~~A~~~~~~ 563 (579)
+ +....+.+++++|.++++-
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3 3345678999999999874
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.014 Score=40.79 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CC---CC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLG--VS---PN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+++.+...|...|++++|+..+++..+.. .. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777778888888888888888776431 11 22 44788888899999999999999988764
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.15 Score=40.75 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=61.0
Q ss_pred HHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 445 IYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
-+-..|++++|..+|.-+. + -+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3456788888888887665 2 3445566666777778888888888887766542 3555566677788888888888
Q ss_pred HHHHHHHHH
Q 043608 522 LHLYRIMEN 530 (579)
Q Consensus 522 ~~~~~~~~~ 530 (579)
+.-|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.9 Score=40.28 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCChh------hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKNADSV------SWNSIIAACLQ---HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
..++-+|....+++..+++++.+...|+.. .-....-++.+ .|+.++|.+++..+......+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666664443221 11122333444 666777777776655444555666655554
Q ss_pred HH
Q 043608 409 GA 410 (579)
Q Consensus 409 ~~ 410 (579)
..
T Consensus 225 RI 226 (374)
T PF13281_consen 225 RI 226 (374)
T ss_pred HH
Confidence 43
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.59 E-value=4.8 Score=46.37 Aligned_cols=161 Identities=9% Similarity=0.056 Sum_probs=100.6
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCC--CCChhHHHHHHHHHHccCChhhHHHhhc-CCCCCCeeehhHHhhhhhcCCC
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKC--QPDVVLQNHILNMYGKCGSLEDARMGFD-KMPQRNVVSWTAMIAGCSQNYQ 116 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 116 (579)
++..+-.+.+.+.+|...++.-..... ......+..+...|+..+++++...+.. ....|+. ...|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 445566678889999999988421111 1122344444558999999999888776 3444432 333445567899
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHH-HHHHHHHhcCCCHHHHHHHhc
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQ-NALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 195 (579)
+..|...|+++.+.+ ++...+++-+++.....|.++.+.-..+-.... ..+....+ +.=+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 444778888888877788777766644433322 12222222 222334467777777776655
Q ss_pred ccCCCcHhhHHHH
Q 043608 196 GIARKDVTSWGSM 208 (579)
Q Consensus 196 ~~~~~~~~~~~~l 208 (579)
.++..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.68 Score=35.21 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSAR 456 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 456 (579)
.-.|..++..++..+.... .+..-++.+|--....-+-+...+.++.+-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 4467777777777776654 3445555555544444444444444443322 22221 223333333
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 043608 457 KLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
..+-.+- .+.......+..+..+|+-|.-.+++..+.+. -.+++..+-.+..+|.+.|+..++.+++.+.-+. |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3332222 22233455667778888888888888887753 3677788888888888888888888888888766 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.019 Score=46.03 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=65.5
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhh
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQEND 119 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (579)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.++..++++.... .-...+++.+.+.|-+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888899999999999999877667788999999999999888999998884332 444566777777777777
Q ss_pred HHHHHHHH
Q 043608 120 AIKLYIQM 127 (579)
Q Consensus 120 a~~~~~~~ 127 (579)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777764
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.5 Score=40.38 Aligned_cols=181 Identities=9% Similarity=-0.004 Sum_probs=109.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKELGKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
+...|...+.--.+.|+.+.+.-+|+....+ .=...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456667777777888988888888886333 12223444444444458888888777766554333222222222223
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHHcCCHHHHH---HHHhhCCC--CChhhHHHHHHH-----HHh
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDV-FVMNGLMDIYIKCGSLGSAR---KLFNFMEN--PDVVSWSSLILG-----YAQ 479 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~l~~~-----~~~ 479 (579)
+-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++....+ .+......+.-- +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 345679999999999888654 332 22223344556778887777 44444332 222222222222 234
Q ss_pred cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 043608 480 FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG 516 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 516 (579)
.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 57889999999999886 5667778888888777655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.087 Score=42.03 Aligned_cols=84 Identities=4% Similarity=-0.156 Sum_probs=51.6
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC---CCCeeehhHHhhhhhcCCChhhHH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP---QRNVVSWTAMIAGCSQNYQENDAI 121 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 121 (579)
+-..|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|+..|.... ..|+..+-.....+...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 445677777777777666555 3444555556666666677777776664432 334444555566666677777777
Q ss_pred HHHHHHHH
Q 043608 122 KLYIQMLQ 129 (579)
Q Consensus 122 ~~~~~~~~ 129 (579)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.31 Score=39.00 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=22.2
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFV-MNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+..+..++|+.-|..+.+.|...-+.. .-.........|+...|...|+++-
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 344455555555555555544321111 1111222334445555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.24 Score=42.96 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=70.7
Q ss_pred CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcc----------------cchhhHH
Q 043608 261 SPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGR----------------LTLYQGM 319 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 319 (579)
+.|-.+|-..+..+.. .+.++-....++.|.+-|+.-|..+|..|++.+-+. .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455666666655543 456777778889999999999999999999887542 2344578
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
.++++|..+|+.||..+-..+++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999887753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.76 Score=44.47 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHhcCCHHHHHHHHHHHH-HCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 376 CLQHNQAEELFRLFSRML-ASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
..-.++++.+.++.+.-. -..++ ..-...++.-+.+.|..+.|+++... + ..-.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 345677777666654111 11122 33466777777788888888877533 2 123455678899999
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 043608 455 ARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 455 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
|.++.++.. +...|..|.....++|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 988877765 566899999999999999999998887543 455666677778887777777666654 2
Q ss_pred CCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 535 IPTREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
-++.-..++.-.|+.++..+++.+-+.-|
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 14445566667788888888877765333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.67 Score=41.47 Aligned_cols=115 Identities=8% Similarity=0.029 Sum_probs=49.8
Q ss_pred cCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH----HHHHHHhccCChHHH
Q 043608 347 CSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN----DVMGACAKMASLEMV 420 (579)
Q Consensus 347 ~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a 420 (579)
.|++.+|...++++ ..+.|..+++..-.++.-.|+.+.....+++.... ..||...|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444 22224444444455555555555555555554433 122221111 111223344555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 421 TQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
++.-++..+.+ +.|.....++...+.-.|+..++.++..+-.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 55544444333 2233333444444444555555555544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.3 Score=36.93 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.+-|.+.|.+..|..-+++|++. .+-. ...+-.+..+|...|-.++|...-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677777788888878887775 2222 2245556667777777777777666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.33 Score=40.24 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH--HH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV--TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS--CV 544 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 544 (579)
.+..+..-|++.|+.+.|++.+.++.+....|... .+..+++.....|++..+...+.+......-..+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566777788888888888888887765555432 566777777788888888888777765422211211111 11
Q ss_pred HH--HHHhcCChhHHHHHHHhhc
Q 043608 545 VD--LLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 545 ~~--~~~~~g~~~~A~~~~~~~~ 565 (579)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 2345678888888776663
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.5 Score=38.54 Aligned_cols=164 Identities=15% Similarity=0.026 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHhHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQ---IKPDHITFNDVMGACAK---MASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
.....++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|.+++..+....-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667888999999999999998752 11122222234445566 889999999999977666678888888
Q ss_pred HHHHHHHHc---------CCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCC-cH---HHHHHH----HHHHhCCCC--
Q 043608 441 GLMDIYIKC---------GSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGC-GD---EALKLF----TRMRSLGVS-- 499 (579)
Q Consensus 441 ~l~~~~~~~---------~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~m~~~~~~-- 499 (579)
.+.+.|-.. ...++|...|.+.-+ ||..+--.++..+...|. .+ +..++- ....++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 888776421 235667777766553 332221122222222332 21 222222 112233322
Q ss_pred -CChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 500 -PNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 500 -p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+-.-+.+++.++.-.|+.++|.+..++|.+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2344556677777777888888888887775
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.29 Score=45.07 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-chhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-EHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~ 546 (579)
..+..+.-+|.+.+++..|++.-.+.+..+ ++|...+--=..+|...|+++.|+..|+++.+ +.|+. ..-..|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence 345556667777777777777777777653 44555555666677777777777777777774 34543 34444544
Q ss_pred HHHhcCChh-HHHHHHHhh
Q 043608 547 LLARAGCVH-EAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~-~A~~~~~~~ 564 (579)
+-.+..+.. ...++|.+|
T Consensus 334 l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444444333 335666666
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.8 Score=37.03 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=21.4
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCC--CCcchhHHHHHHHHhcCChhHHHHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGII--PTREHCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (579)
.|-.+....|+..|...++.-..-.++. -+..+...|+.+| ..||.+++..+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444445555555555432221111 1222344444444 34555555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.7 Score=34.46 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=58.3
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
...++..+...+.+......++.+...| ..+...++.++..+++.. .....+.+.. ..+......+++.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666667777777777777665 345566677777776543 2233333321 1223333445555666
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc-CChHHHHHHHHH
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKL-GYELEALCHFNE 227 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 227 (579)
.+.++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666655555432 12222223333 556666665544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.67 Score=45.55 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=60.2
Q ss_pred CCHHHHHHHHhhCCC--CChhhHHHH-HHHHHhcCCcHHHHHHHHHHHhCC--C-CCChhHHHHHHHHhhccCchHHHHH
Q 043608 450 GSLGSARKLFNFMEN--PDVVSWSSL-ILGYAQFGCGDEALKLFTRMRSLG--V-SPNLVTLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 450 ~~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~~ 523 (579)
...+.|.++++.+.+ |+...|... .+.+...|++++|++.|++..... . +.....+.-+...+...++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445666666666664 665555433 234455667777777776554311 0 1122344455556666677777777
Q ss_pred HHHHHHHhhCCCCCcchhHHH-HHHHHhcCCh-------hHHHHHHHhh
Q 043608 524 LYRIMENEYGIIPTREHCSCV-VDLLARAGCV-------HEAEDFINQM 564 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~ 564 (579)
.|..+.+.... +..+|.-+ .-++...|+. ++|.+++.+.
T Consensus 327 ~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 77777654222 22222222 2334455666 6666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.8 Score=34.34 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 206 GSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
..++..+.+.+.+.....+++.+...+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 344555555566666666666665554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.5 Score=33.41 Aligned_cols=139 Identities=11% Similarity=0.155 Sum_probs=71.0
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
-.|.+++..+++.+.... .+..-++.+|--....-+-+...+.++.+ |--.|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHH
Confidence 356666666666666543 23344444443333333333333333332 2111221 2233333333
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
.+-.++. +.......+..+...|+-+...+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 78 C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333222 3344566677777888888888888887653 3677777788888888888888888888888877753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.56 E-value=4.6 Score=38.77 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
-.-+..+.+.-.+.-++..+. .|+..+-..++ +--......++++++++..+.|-. . +.+......
T Consensus 177 ~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~~~~ 242 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQFLQH 242 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhhhhc
Confidence 334444555555555555543 45544433322 222344577888888877654311 0 001000000
Q ss_pred HHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 455 ARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 455 A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.-..++... .+-...-..+..++.+.|+.++|++.+++|.+.....| ......|+.++...+.+.++..++.+-.
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 001111111 22233344567777788999999999999986532212 3366788999999999999999988875
Q ss_pred H
Q 043608 530 N 530 (579)
Q Consensus 530 ~ 530 (579)
+
T Consensus 323 D 323 (539)
T PF04184_consen 323 D 323 (539)
T ss_pred c
Confidence 4
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.01 Score=47.62 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=81.2
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+|+.+.+.+.++.+...++.+... +...+....+.++..|++.++.+...++++. .+..-...++..|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEK 82 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHh
Confidence 46788999999999999999999876 5556778889999999999877777777762 111334466667777
Q ss_pred cCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 83 CGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
.|.+++|.-++.++...+ ..+..+...++++.|.+...+ .++...|..+++.+...+
T Consensus 83 ~~l~~~a~~Ly~~~~~~~-----~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHD-----EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp TTSHHHHHHHHHCCTTHT-----TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTST
T ss_pred cchHHHHHHHHHHcccHH-----HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcC
Confidence 777777777777665421 111123334455555532222 224555555555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.19 Score=47.38 Aligned_cols=96 Identities=14% Similarity=-0.033 Sum_probs=63.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.+...++.+..+|.+.|++++|...|++.. +|+. .+|..+..+|...|+.++|+..+++..+.+ .| .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHH
Confidence 356778888888888888888888888866 3553 347888888888888888888888888752 11 2221
Q ss_pred HHH--HhhccCchHHHHHHHHHHHHhhCC
Q 043608 508 VLT--ACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 508 l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
+.. .+....+.++..++++.+.+- |.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~-G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKG-GE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHh-CC
Confidence 111 011223444666666666653 44
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.4 Score=42.71 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
++...|..|.+...+.|+++-|.+.|++..+ +..++--|...|+.+...++.+.....|- ++...
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af 409 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAF 409 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHH
Confidence 3445566666666666666666666655432 33444444555555555555555444441 34444
Q ss_pred HHHHhcCChHHHHHHHHHcCC
Q 043608 342 TMYAKCSVLCNALLVFKELGK 362 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~ 362 (579)
.++.-.|+.++..+++.+.+.
T Consensus 410 ~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHcCC
Confidence 455555666666666655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.25 E-value=2 Score=39.05 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcC
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAK--MA----SLEMVTQLHCYITKTG 431 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~ 431 (579)
+++...+++.|.+.|+.-+..+|......... .. ...++..+++.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 44566778888888888777666553322222 22 2345666777777543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.16 Score=47.87 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCee----ehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHH
Q 043608 67 QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVV----SWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFG 140 (579)
Q Consensus 67 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 140 (579)
+.+...++.+..+|.+.|++++|+..|++..+ |+.. +|..+..+|...|+.++|++.+++..+.+ ...|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 44555666666666667777777777666542 4322 36666666777777777777777766642 11122
Q ss_pred HHHH--HhcCCCcchhHHHHHHHHHHhcc
Q 043608 141 SIIK--ACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 141 ~li~--~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
.+.. .+...++.....++++...+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2211 11233455555556666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=4 Score=36.31 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 043608 210 AAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSE 289 (579)
Q Consensus 210 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 289 (579)
......|++.+|..+|+...... +.+...--.++.+|...|+.+.|..++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~----------------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA----------------------------PENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC----------------------------cccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34566777777777777776653 23344555667777888888888888877
Q ss_pred HHhC
Q 043608 290 MRDR 293 (579)
Q Consensus 290 m~~~ 293 (579)
+...
T Consensus 194 lP~~ 197 (304)
T COG3118 194 LPLQ 197 (304)
T ss_pred Cccc
Confidence 6543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.99 E-value=10 Score=40.63 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--HHHHHHHHhhccCchHHH
Q 043608 444 DIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV--TLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 521 (579)
+.+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++.. .-+.. +-..|+.-+..++++-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhH
Confidence 333445555665555554332 12235666677777777777666542 11222 224667777888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
-+++.+.... ....+..|++...+++|.++...-
T Consensus 1019 a~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8887777643 334566777778888888877655
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=8.7 Score=39.09 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=102.2
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCC---CcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRI---RPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
|+++.+.+.+++|++..+.... ..+ -.......|..+...|+++.|-...-.|. ..+...|..-+..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcc
Confidence 6788899999999998876553 333 23355667777888889998888888886 4566777777777777
Q ss_pred cCChhhHHHhhcCCCC-CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ-RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
.+.......++=.-+. -+...|..++..+.. .+... |.+.++. .+++...-..++++- . .+
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~----F~e~i~~-Wp~~Lys~l~iisa~--~----------~q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKG----FLELIKE-WPGHLYSVLTIISAT--E----------PQ 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHH----HHHHHHh-CChhhhhhhHHHhhc--c----------hH
Confidence 7777665554433332 355678888877766 33222 2222221 122222212222211 0 01
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV 202 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (579)
..+. ..+..+...|+..|...++++.|.+.+-...+.++
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1111 11223334488889999999999998877766543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.8 Score=38.88 Aligned_cols=152 Identities=11% Similarity=-0.054 Sum_probs=109.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT---GLAFDVFVMNGLMDIYIKCGSLG 453 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 453 (579)
.-.|+..+|...++++.+. .+.|...+...-.+|...|+.+.-...++++... +++....+-..+..++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3478888888888888876 5667778888888999999998888888887743 22222333445556667899999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC----ChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 454 SARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP----NLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 454 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+|++.-++..+ .|.-.-.+....+-..|++.++.++..+-... .+- -...|....-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988875 34445567777788889999998887665432 121 13356666667778899999999998
Q ss_pred HHHH
Q 043608 527 IMEN 530 (579)
Q Consensus 527 ~~~~ 530 (579)
+-.-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 6443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.16 Score=30.47 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=23.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
++..+..++.+.|++++|.++++++++.. +.++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 44556666666677777777777666654 4444444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=8.2 Score=37.99 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=82.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH-cc
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG-KC 83 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 83 (579)
+|.---.....+.+...+..+... .|.-..-|......-.+.|..+.+..+|++-+. +++.+...|...+..+. ..
T Consensus 51 li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~ 127 (577)
T KOG1258|consen 51 LIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNN 127 (577)
T ss_pred HHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccC
Confidence 333333333445555666666653 444444556666666778888899999998885 45777777877776665 34
Q ss_pred CChhhHHHhhcCCCC------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 84 GSLEDARMGFDKMPQ------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 84 g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
|+.+...+.|+.... .+...|...|.--..++++.....+|++.++.
T Consensus 128 ~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 128 GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 677777777776653 34556777787777888888888888888764
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.47 E-value=10 Score=38.93 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=35.5
Q ss_pred CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 100 NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
|...-=.+|--+.|.|++++|.++....... .......|...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3344445677789999999999999665543 4556678888899987754
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.44 E-value=8.7 Score=37.94 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhcccCCC-c---------HhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCh
Q 043608 173 AQNALIAMYTKFDRILDARNVFSGIARK-D---------VTSWGSMIAAFSK----LGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~---------~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
....++...+-.|+-+..++.+.+..+. + ...|...+..++. ..+.+.|.+++..+.++
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~------- 262 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR------- 262 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-------
Confidence 4456777777888888888888765442 1 1234444444433 44567788888887776
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHcCCChHHHHHHHHHHHhCCC---CCChHHHHHHHHHhhcccc
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPDLASWNAL-IAGVASHSNANEAMSLFSEMRDREL---LPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~ 314 (579)
-|+...|... .+.+...|++++|++.|+....... +.....+.-+.-.+.-..+
T Consensus 263 ----------------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 263 ----------------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred ----------------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 4555555433 3556667888888888886553210 1122223333444555667
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHH-HHHhcCCh-------HHHHHHHHHc
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILT-MYAKCSVL-------CNALLVFKEL 360 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~ 360 (579)
+++|.+.+..+.+.+- -+..+|.-+.- ++...|+. ++|.++|.++
T Consensus 321 w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777777776666431 13333333322 22334444 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.1 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=27.0
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+.|++++|.+.|+.+...- +.. ...-..++.+|.+.|++++|...++++.+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555555431 111 223344555555555555555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.17 E-value=5.1 Score=34.48 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CCChhHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--------PDV-VSWSSLILGYAQFGCGDEALKLFTRMRSLGV---SPNLVTLV 506 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~ 506 (579)
+......+.+...+++|-..+.+-.. ++. ..|...|-.+.-..++..|.+.++.--..+- +-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33444555666666665544443321 221 2344555566667778888888877443211 12355777
Q ss_pred HHHHHhhccCchHHHHHHH
Q 043608 507 GVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~ 525 (579)
.|+.+|- .||.+++..++
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 7777664 47777766544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.14 E-value=15 Score=39.63 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=12.4
Q ss_pred hhHhhhcCChhHHHHHHHH
Q 043608 6 VSSLCKQNLYNEALVAYDF 24 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~ 24 (579)
++.+++++++.+|+++.++
T Consensus 684 vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.66 Score=35.16 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=61.5
Q ss_pred HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC----CCeeehhHHh---hhhhcCCC
Q 043608 44 ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ----RNVVSWTAMI---AGCSQNYQ 116 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~---~~~~~~~~ 116 (579)
+++..|+.+.|++.|.+.+..- +.....||.-.+++--+|+.++|++-+++..+ .....+.+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888877654 56778888888888888888888877776653 1122222222 23566788
Q ss_pred hhhHHHHHHHHHHCC
Q 043608 117 ENDAIKLYIQMLQSG 131 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g 131 (579)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888887766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.9 Score=39.73 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-C-ChhHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-P-NLVTLVGVL 509 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~l~ 509 (579)
.|+.-+.. .+.|++..|..-|....+ |+ ...+--|..++...|++++|..+|..+.+.-.+ | -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 355667777777776663 22 223444678888999999999999888875211 1 135677777
Q ss_pred HHhhccCchHHHHHHHHHHHHh
Q 043608 510 TACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999999986
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.2 Score=33.09 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc-CCCCCchhHHH
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM-GFDSNVPVCNA 339 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 339 (579)
+|+...|..+++.+.+.|++.. +..+...++-+|.......+-.+... ...+.++--+|.++ + ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHhh-----hhHHH
Confidence 6777778888888888877544 34445556667766655444333221 12222222222221 1 01334
Q ss_pred HHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
+++.+...|++-+|.++.+..+.. +......++.+....+|...-..+++-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555566666666666666554322 2223334444444445444444444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.9 Score=40.03 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
.+++.+..++.+.+++..|++.-++....+ ++|......-..++...|+++.|...|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 345666667777777777777777666653 4566666666667777777777777777776643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.51 Score=28.30 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.25 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 58 HDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
|++.++.. |.++..|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555 667778888888888888888775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.1 Score=37.95 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=68.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CChh------
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGL-----AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-------PDVV------ 468 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~------ 468 (579)
+..++...+.++++++.|+...+... .....++..|...|....++++|.-+..+..+ .|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555556667777777766553211 11235566777777777777776655444331 2211
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH----hCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMR----SLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.-.|.-++...|+...|.+.-++.. .+|-+|- ......+.+.|-..|+.+.|+.-|+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11223445666777766666665543 3332222 3345566677777788777777766654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.2 Score=32.49 Aligned_cols=52 Identities=25% Similarity=0.126 Sum_probs=25.5
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|+.+.|++.|.+.... .+-+...|+.-..++--+|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555442 122344555555555555555555555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.42 Score=27.12 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~ 492 (579)
..|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.1 Score=34.49 Aligned_cols=51 Identities=20% Similarity=0.004 Sum_probs=21.6
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
..|.++....-.+-+...+.+--......|.-+-.+.|++..|.+.|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 334444444333333333322223333344444445555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.35 E-value=10 Score=34.68 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc--c----cchhhHHHHHHHHHHcC
Q 043608 280 ANEAMSLFSEMRDRELLPDGLTVHSLLCACIG--R----LTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~ 329 (579)
+++.+.+++.|.+.|..-+..+|-+....... . .....+..+++.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45667788888888888888777553333222 2 22446667777777664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=4.3 Score=38.79 Aligned_cols=143 Identities=12% Similarity=-0.013 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHHH-HcCCCCc-hhHHHHHHHHHHH---------cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 043608 416 SLEMVTQLHCYIT-KTGLAFD-VFVMNGLMDIYIK---------CGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG 481 (579)
Q Consensus 416 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 481 (579)
..+.|..+|.+.. ...++|+ ...|..+..++.. .....+|.+.-+...+ .|......+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4667888888887 3344554 3444444433322 2234556666666553 56777777777778888
Q ss_pred CcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhcCChhHH
Q 043608 482 CGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 557 (579)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+. .|. ..+....++.|+..+ +++|
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL---sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL---EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 899999999999985 676 446666666777889999999999997643 554 334555566777666 7888
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
..++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 8877554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=9.8 Score=33.22 Aligned_cols=183 Identities=12% Similarity=0.052 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc----
Q 043608 376 CLQHNQAEELFRLFSRMLASQI--KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC---- 449 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 449 (579)
-.+.|++++|.+.|+.+..... +-...+...++.++-+.++++.|....++..+.-....-.-|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3456777777777777765421 1223455555666677777777777777766544333333344444444311
Q ss_pred ---CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 450 ---GSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 450 ---~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
.+...+..-+..+. .++.-|=.+.=...|......+... . ..-=..+.+-|.+.|.+..|..-++
T Consensus 124 ~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 124 DVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred ccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHHHHHH
Confidence 11111111111111 0111110111111111111111110 0 0001235567889999999999999
Q ss_pred HHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhhcC-CCCh
Q 043608 527 IMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQMAC-DADI 570 (579)
Q Consensus 527 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 570 (579)
+|.+.+.-.+ ..+.+..+..+|...|-.++|...-.-++. .||.
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9998532222 233556678899999999999988877742 3444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.51 Score=26.76 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=13.9
Q ss_pred HHHHHHHhhccCchHHHHHHHHHH
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.79 E-value=21 Score=36.52 Aligned_cols=50 Identities=14% Similarity=-0.057 Sum_probs=24.9
Q ss_pred HHhcCCCHHHHHHHhcccCCC-----cHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043608 180 MYTKFDRILDARNVFSGIARK-----DVTSWGSMIAAFSKLGYELEALCHFNEML 229 (579)
Q Consensus 180 ~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 229 (579)
-+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-.|.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344455555555555444332 11244555555555566655555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.61 E-value=6.6 Score=32.64 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh--HHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI--TFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
.+..+...|++.|+.+.|.+.|.++.+....+... .+..+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46667777888888888888888877765444432 345566667777777777777766653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.1 Score=37.12 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHhHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA-----SQIKPDHITFNDVM 408 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~ 408 (579)
++..++..+...|+.+.+.+.++++ -.+-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556677777777777777777776 3334667788888888888888888888877654 46677666555444
Q ss_pred HH
Q 043608 409 GA 410 (579)
Q Consensus 409 ~~ 410 (579)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.41 E-value=14 Score=33.65 Aligned_cols=93 Identities=15% Similarity=0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC--------CCCCCh-----HHHHHHHHHhhcccchh---hHHHHHHHHHHcCC
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDR--------ELLPDG-----LTVHSLLCACIGRLTLY---QGMQVHSYIIKMGF 330 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~ 330 (579)
|+.-...+.+..+++.|..++++..+- ...|+. .++..++.++...+..+ +|..+++.+....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~- 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY- 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-
Confidence 333333333333777777766654332 122332 23444555555554433 3444444443322
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
+..+.++-.-++.+.+.++.+.+.+.+.+|
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 223344444555555566666666666665
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.40 E-value=13 Score=33.30 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhH---HHHHHHHHhcCCcH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-PDVVSW---SSLILGYAQFGCGD 484 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~---~~l~~~~~~~~~~~ 484 (579)
......|++..|...|+........ +....-.+.++|...|+.+.|..++..+.. ....-+ ..-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445677888888888877765433 345566788889999999999999998873 111122 22344555555555
Q ss_pred HHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhH
Q 043608 485 EALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (579)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+=.+.++..-.-|...-..|+..+.--|.-+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555544 35 55566677788888899999888655555442222345566677777776664333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.39 E-value=4.1 Score=39.09 Aligned_cols=64 Identities=8% Similarity=0.202 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
..+=..+..++-+.|+.++|.+.+++|.+.+...-...+...|+.++...+.+.++..++.+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344457777889999999999999998753222234477889999999999999999999984
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=9.5 Score=36.58 Aligned_cols=157 Identities=12% Similarity=0.075 Sum_probs=102.6
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHHC-CCCCcH-hHHHHHHHHHhc---------cCChHHHHHHHHHHH
Q 043608 367 VSW--NSIIAACLQH-----NQAEELFRLFSRMLAS-QIKPDH-ITFNDVMGACAK---------MASLEMVTQLHCYIT 428 (579)
Q Consensus 367 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 428 (579)
..| ..++.+.... ...+.|..+|.+.... .+.|+. ..|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5566665442 2466788899998722 245664 445555444322 123445666666666
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV-- 503 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 503 (579)
+.+ +.|+.....+..+..-.++++.|...|++... || ...|........-.|+.++|.+.+++..+. .|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHH
Confidence 665 34777777788878888999999999998874 55 345666666677899999999999997774 56533
Q ss_pred -HHHHHHHHhhccCchHHHHHHHHH
Q 043608 504 -TLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 504 -~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
.....+..|+.. ..+.|+.++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 333444466654 46777776543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.4 Score=37.77 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
++..++..+...|+.+.+.+.++++.. -+...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 444455555555555555555555442 244455555555555555555555555544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=19 Score=34.87 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=79.0
Q ss_pred HHHHHHHhhCCCCChhhH-HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh--ccCchHHHHHHHHHHH
Q 043608 453 GSARKLFNFMENPDVVSW-SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS--HVGLVEEGLHLYRIME 529 (579)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 529 (579)
+.....+..+..++..++ +.++.-+.+.|-.++|...+..+... .+|+...|..++..-. ..-+...+..+++.+.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334455556666777765 45777778889999999999999886 4566777777776532 1223788899999999
Q ss_pred HhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 530 NEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+| -++..|...+..=...|..+.+-.++.+.
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 9888 56667777766666888888877776655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.17 E-value=5.3 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred HcCCHHHHHHHHhhCC--CCChhhHHHH-HHHHHhcCCcHHHHHHHHHHHhC
Q 043608 448 KCGSLGSARKLFNFME--NPDVVSWSSL-ILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+.++.+++..++..+. +|.......+ ...+...|++++|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555443 3433222221 23345666666666666665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=26 Score=36.25 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 71 VLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 71 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
..-...+..+.+.+++......+..- ..+...-.....+....|+.++|.+..+.+=-.| ...+.....++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 34444555566677777777733222 2344444556666777777777776666665544 223444555555544433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.1 Score=31.85 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVV 545 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 545 (579)
.-++.+-+..+....+-|++.....-+++|-+.+|+..|.++++-.+.+-+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 345666677777777888888888888888888888888888887775422 2344555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=15 Score=33.34 Aligned_cols=145 Identities=7% Similarity=-0.040 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCCh----hhHHHHHHHHHHCCCCCCcccHHHHH
Q 043608 68 PDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQE----NDAIKLYIQMLQSGVMPGQFTFGSII 143 (579)
Q Consensus 68 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~g~~p~~~~~~~li 143 (579)
++.......+..+...|..+-...+..-...+|...-...+.++.+.|+. +++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444332222222222233333333444444444442 3455555555332 33444444444
Q ss_pred HHhcCCCcchh--HHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHh
Q 043608 144 KACSGLGSVCL--GRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSK 214 (579)
Q Consensus 144 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
.++...+.... -.+....+...-..++..+....+.++.+.++.+....+..-+..++...-...+.++.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 44433321110 111222222222223445555555555555553333333333333444333333444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.52 E-value=19 Score=34.04 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC---ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP---NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777778888888888888888877643222 223333445556667777888887777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.36 E-value=9.1 Score=30.11 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=38.4
Q ss_pred HHhcCChHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh
Q 043608 344 YAKCSVLCNALLVFKELGKN-----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA 412 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 412 (579)
..+.|++++|.+.|+.+..+ -....--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34566677777777666211 1233445566677777777777777777766542222233444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=23 Score=34.01 Aligned_cols=119 Identities=11% Similarity=0.026 Sum_probs=64.0
Q ss_pred hcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHH
Q 043608 46 SSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIK 122 (579)
Q Consensus 46 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 122 (579)
...|++..|-+-+...+... +.++.........+...|+++.+...+..... ....+...+++...+.|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34456555544333333222 22333333333345567888888777766553 344566677777777788888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 123 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.-+-|....+. ++..........-..|-++++.-.++++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 87777765543 22222111122223345666666666665544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=4.8 Score=39.49 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=79.4
Q ss_pred cCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
.|+++.|..++..++++ .-+.+.+.+-++|-.++|+++- +|...- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 46666666666555532 2233444444555555554432 121111 11223445666665554332
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHH
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 242 (579)
.+..-|..|.++....|++..|.+.|.+.. .|..|+-.+...|+-+....+-....+.|.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------- 723 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--------- 723 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc---------
Confidence 234456666666666666666666665433 245555556666665555555555555542
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 043608 243 SVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM 290 (579)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (579)
.|...-++...|+++++.+++..-
T Consensus 724 ------------------------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------------------------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------------------------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233445677788999888887653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.43 E-value=1 Score=32.41 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
+..+-+..+....+-|++......+++|-+.+|+..|.++|+.++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 56666777777788899999999999999999999999999988875 3333446766544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.31 E-value=34 Score=35.39 Aligned_cols=175 Identities=8% Similarity=0.024 Sum_probs=80.6
Q ss_pred hhhHHHHHHH-hCCCCC--hhHHHHHHHHHH-ccCChhhHHHhhcCCC----CCCee-----ehhHHhhhhhcCCChhhH
Q 043608 54 GRKVHDHILL-SKCQPD--VVLQNHILNMYG-KCGSLEDARMGFDKMP----QRNVV-----SWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 54 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~-----~~~~l~~~~~~~~~~~~a 120 (579)
|+..++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.. +++.. .-..+++.+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555555553 222332 234445555554 4566777777666543 11111 1223344454444444 6
Q ss_pred HHHHHHHHHCCCC----CCcccHHHH-HHHhcCCCcchhHHHHHHHHHHhc---cCCChhHHHHHHHHHh--cCCCHHHH
Q 043608 121 IKLYIQMLQSGVM----PGQFTFGSI-IKACSGLGSVCLGRQLHAHVIKSE---HGSHLIAQNALIAMYT--KFDRILDA 190 (579)
Q Consensus 121 ~~~~~~~~~~g~~----p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a 190 (579)
...+++.++.--. +-...|..+ +..+...++...|.+.++.+.... ..+...++-.++.+.. ..+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 6666665543211 111222222 222222367777777776665533 2233333333333333 23333444
Q ss_pred HHHhcccC-------------CCcHhhHHHHHHHH--HhcCChHHHHHHHHHHH
Q 043608 191 RNVFSGIA-------------RKDVTSWGSMIAAF--SKLGYELEALCHFNEML 229 (579)
Q Consensus 191 ~~~~~~~~-------------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~ 229 (579)
.+.++++. .+...+|..+++.+ ...|+++.+.+.++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44433321 11334566666544 46777777776666654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.2 Score=29.70 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|++.+..+-++++.|.+|+..|.++++-+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555555555555555555555555433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.7 Score=30.41 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=19.2
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
|++....+.+++|.+.+++..|+++|+-.+.+
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666666676777777777776666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.94 E-value=17 Score=31.51 Aligned_cols=214 Identities=16% Similarity=0.082 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCChHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 314 TLYQGMQVHSYIIKMGFDS-NVPVCNAILTMYAKCSVLCNALLVFKELG----KNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
....+...+.......... ...........+...+++..+...+.... .......+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444332221 23444555555556666666655555442 122333444455555555556666666
Q ss_pred HHHHHHCCCCCcHhHHHHHHH-HHhccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-
Q 043608 389 FSRMLASQIKPDHITFNDVMG-ACAKMASLEMVTQLHCYITKTGL--AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN- 464 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 464 (579)
+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+...+....+
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666555432221 11111122 45555666666666655533111 01122222222334444555555555554442
Q ss_pred --C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 465 --P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 465 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+.+...+.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1333444445555555555555555555543 222 22222333333344445555555554443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.58 E-value=40 Score=35.36 Aligned_cols=221 Identities=16% Similarity=0.077 Sum_probs=118.4
Q ss_pred HHHhcCChHHHHHHHHHc---CCCCChh-------hHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCcHhHHHHH
Q 043608 343 MYAKCSVLCNALLVFKEL---GKNADSV-------SWNSIIAA-CLQHNQAEELFRLFSRMLAS----QIKPDHITFNDV 407 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~---~~~~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 407 (579)
.....+++.+|..+..++ -..|+.. .|+.+-.. ....|+++++.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 334567777777777665 1111111 23433322 23467888888887766543 123344455566
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH-----HHHHHcCCHHHH--HHHHhhCC-----C-----CChhhH
Q 043608 408 MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM-----DIYIKCGSLGSA--RKLFNFME-----N-----PDVVSW 470 (579)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A--~~~~~~~~-----~-----~~~~~~ 470 (579)
..+..-.|++++|..+.....+..-..+...+.... ..+...|+...+ +..|.... + +-...+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 677777888999888887776553344444443332 224455633322 22222222 1 122344
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHhCCCCCChhH--HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH----H
Q 043608 471 SSLILGYAQF-GCGDEALKLFTRMRSLGVSPNLVT--LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS----C 543 (579)
Q Consensus 471 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~ 543 (579)
..+..++.+. +.-.++..-++--......|-... +..|+......|+.++|...++++..- ...+...++. .
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 4455555541 122222222333223222232222 337788888999999999999999875 3333322221 1
Q ss_pred HH--HHHHhcCChhHHHHHHHhh
Q 043608 544 VV--DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~--~~~~~~g~~~~A~~~~~~~ 564 (579)
.+ ......||.++|..++.+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 22 2234778999998888774
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.45 E-value=36 Score=34.66 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHH--HHHH-hcCCCcchhHHHHHHHHHH-------hccCCChhHHHHHHHHHhcCC-
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGS--IIKA-CSGLGSVCLGRQLHAHVIK-------SEHGSHLIAQNALIAMYTKFD- 185 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~--li~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g- 185 (579)
...|.+.++...+.|.. ....... ...+ .....+.+.|..+++.+.+ .| .......+..+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888888777622 1111112 2223 4466788888888888876 44 2233444555555432
Q ss_pred ----CHHHHHHHhcccCCC-cHhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 043608 186 ----RILDARNVFSGIARK-DVTSWGSMIAAFSK---LGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 186 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~ 233 (579)
+.+.|..++...-.. ++..--.+...+.. ..+...|.++|....+.|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 455566666554332 11111112222211 2345677777777777663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.3 Score=24.49 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.15 E-value=38 Score=34.64 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHcCCHHHHHHHHhhCCC-CChhh-H---HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 445 IYIKCGSLGSARKLFNFMEN-PDVVS-W---SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~-~~~~~-~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
++..-|+.++|..+.+++.. .|+.. | -++..+|+-.|+.....+++.-.+.. +..|..-...+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34455677788888888773 34332 1 23456777888877777777665553 3445666666666777778888
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
....+.+-+.+.++.....-+--.|.-+|+-.| ..+|..+++.|-..|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcCh
Confidence 888888877765433333334445566666666 478888888885444
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.95 E-value=4.3 Score=29.25 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=59.0
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.-++|..+-+.+...+ .....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 3566777777766544 2233333344566778999999999999999999999887765 356777777777777777
Q ss_pred CCCCCCcccH
Q 043608 130 SGVMPGQFTF 139 (579)
Q Consensus 130 ~g~~p~~~~~ 139 (579)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4443333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.87 E-value=24 Score=32.05 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG-CGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
+..+-...+.++++.++.+....+..-+.++|...-...+.++.+.+ +...+...+..+.. .++...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44555555666666665433333333344455544444455555442 23455555555553 345555555666666
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc-CCCChh
Q 043608 514 HVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA-CDADIV 571 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 571 (579)
+.|+ ..|...+-...+. + + .....+.++..-|+ ++|...+.++- ..||..
T Consensus 218 ~~~~-~~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKK-G---T--VGDLIIEAAGELGD-KTLLPVLDTLLYKFDDNE 268 (280)
T ss_pred ccCC-hhHHHHHHHHHcC-C---c--hHHHHHHHHHhcCC-HhHHHHHHHHHhhCCChh
Confidence 6666 3444444444432 1 1 23456666666666 35666666662 244543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.71 Score=25.49 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=11.5
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHH
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+..+...+...|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.51 E-value=21 Score=35.32 Aligned_cols=85 Identities=19% Similarity=0.077 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+..-|..|.++....+++..|.+.|..... +..|+-.+...|+-+....+-....+.|. .|...
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 4455577777777777777777777665543 33455555555555544444444444442 12233
Q ss_pred HHHHhcCChHHHHHHHHHcC
Q 043608 342 TMYAKCSVLCNALLVFKELG 361 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~ 361 (579)
.+|...|+++++.+++.+-+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 34555666666666665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.39 E-value=13 Score=34.22 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CcHhHHHHHHHHHhccCChHHHHHHHHHHH----HcCCCC-c----h
Q 043608 371 SIIAACLQHNQAEELFRLFSRMLASQIK-----PDHITFNDVMGACAKMASLEMVTQLHCYIT----KTGLAF-D----V 436 (579)
Q Consensus 371 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~----~ 436 (579)
++..++...+.++++++.|+...+--.. .....+..+-..+....++++|.-+..+.. ..++.. + .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445555556666666666655432111 112345555666666666666665544433 222211 1 0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhh----HHHHHHHHHhcCCcHHHHHHHHHH
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVS----WSSLILGYAQFGCGDEALKLFTRM 493 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m 493 (579)
...-.+.-++...|.+..|.+..++..+ -|..+ ...+.+.|...|+.+.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1112233345566666666666655542 23222 234555666777777766666553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.29 E-value=34 Score=33.28 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
|....-+++..+.....+.-+..+-.+|..-| -+...|..++++|... ..+.-..+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344445555555555555555555555542 3444455555555554 334445555555544432 3333333444
Q ss_pred HHHHcCCHHHHHHHHhhC
Q 043608 445 IYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~ 462 (579)
.|.+ ++.+.+..+|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4433 4444444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.53 E-value=3.4 Score=34.83 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCV 544 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 544 (579)
+.+.-+..+.+.++.++++...++-++.+ +.|..+-..++..++-.|++++|..-++-.-. +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34556778889999999999998887763 33555777888899999999999988876653 3444 3355555
Q ss_pred HHH
Q 043608 545 VDL 547 (579)
Q Consensus 545 ~~~ 547 (579)
+++
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.3 Score=22.74 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 043608 543 CVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~ 562 (579)
.+...+...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 45555566666666665554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.40 E-value=19 Score=29.44 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHH
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 485 (579)
.+++.+...|++-+|.++.......+......++.+-.+.+|...
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 344444555555555555544333322333333444444444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.26 E-value=0.97 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=9.8
Q ss_pred hhHHHHHHHHhhccCchHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a 521 (579)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=6.4 Score=35.24 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=72.9
Q ss_pred HhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC-CCe-----eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc
Q 043608 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ-RNV-----VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ 136 (579)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 136 (579)
..|.+....+...++..-....+++++...+=++.. |+. .+-...++.+. .-++++++.++..-++-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 345455555666666665566788888877655552 221 12223333333 45778999999999999999999
Q ss_pred ccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 137 FTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
++++.+|..+.+.++...|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.89 E-value=2 Score=23.64 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.|..+...+...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777788888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.88 E-value=13 Score=27.01 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 152 VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
-++|..+-+.+...+.. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444433321 22222334556788999999999999999899999887765 4677778888888888888
Q ss_pred C
Q 043608 232 G 232 (579)
Q Consensus 232 ~ 232 (579)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 7
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.30 E-value=8.9 Score=31.86 Aligned_cols=87 Identities=9% Similarity=-0.007 Sum_probs=44.2
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCC--hhHHHHHHHHHHccCChhhHHHhhcCCCCCCeee--hhHHhhhhhcCCChhhH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPD--VVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVS--WTAMIAGCSQNYQENDA 120 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 120 (579)
+...+++++|...++..+......+ ..+--.|.......|.+++|+.+++....++-.+ ...-.+.+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4555666666666666553211111 1122233444555666666666666655543222 12223345666666666
Q ss_pred HHHHHHHHHCC
Q 043608 121 IKLYIQMLQSG 131 (579)
Q Consensus 121 ~~~~~~~~~~g 131 (579)
..-|+...+.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 66666666553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.96 E-value=15 Score=33.02 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH
Q 043608 329 GFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSV-----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHIT 403 (579)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 403 (579)
|.+.+..+...++..-....++++++..+-.+...|+.. +-...+.. +..-++++++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 334444445555555555666777777666554333321 11122222 233456788888888888888899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHc
Q 043608 404 FNDVMGACAKMASLEMVTQLHCYITKT 430 (579)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 430 (579)
++.+|+.+.+.+++..|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999888888887766643
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=83.74 E-value=32 Score=30.81 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhH
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSW 205 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (579)
-|+.....+...|.+.|++.+|+..|-.-..++...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 3556677777777888888777776654444444333
|
; PDB: 3LKU_E 2WPV_G. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.64 E-value=28 Score=30.07 Aligned_cols=193 Identities=18% Similarity=0.094 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH-
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLAS-QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD- 444 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 444 (579)
..+......+...+++..+...+...... ........+..........+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 34444445555555555555555554431 1223333444444444455555555555555554332221 11111111
Q ss_pred HHHHcCCHHHHHHHHhhCCCCC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCc
Q 043608 445 IYIKCGSLGSARKLFNFMENPD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGL 517 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 517 (579)
.+...|+++.|...+......+ ...+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 4555555555555555543211 1111122222334455555555555555431 11 23444455555555555
Q ss_pred hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 518 VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++.|...+...... .|+ ...+..+...+...|+.+++...+.+.
T Consensus 218 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 218 YEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555532 222 223333333333444455555555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.39 E-value=2.6 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666553
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.04 E-value=3.5 Score=28.23 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=30.1
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..++.++|+..|+...+.-..|. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776533332 22667777777777777776664
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.77 E-value=2.8 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888887764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.75 E-value=3 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHhhccCchHHHHHHHHHHHHh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344445555555555555555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.50 E-value=11 Score=31.68 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHhcCChhHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPTREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 557 (579)
-+.|.+.|-++...+.--++.....|+..|. ..|.+++..++-+..+.. +-.++++.+..|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3567777777766554434444444444444 567777777777766532 2245677777888888888877776
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.41 E-value=4.5 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=14.9
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 504 TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 504 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555556666666666666665553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.88 E-value=26 Score=27.80 Aligned_cols=50 Identities=8% Similarity=-0.078 Sum_probs=23.3
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
..+++.+..+++.|.-.. |.....-..-...+...|++++|.++|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555566655554332 11111111222233455666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.18 E-value=1.4 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 541 CSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+-.+..++.+.|++++|.+.++++ ...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345778899999999999999998 33454
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.09 E-value=9 Score=33.84 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=23.0
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHH
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 62 (579)
|.++...++|.+++...-.--+. .-+.-+.+...-|-.|.+.+++..+.++-...+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555544433222211 111122233333444455555555555544444
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 1e-14
Identities = 92/619 (14%), Positives = 171/619 (27%), Gaps = 217/619 (35%)
Query: 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLS 64
Y+ + LYN+ V F++ N + R Y L A LR
Sbjct: 112 YIE--QRDRLYNDNQV---FAKYNVS---RLQPYLKLRQALLELRP-------------- 149
Query: 65 KCQPDVVLQNHILNMYGKCG-------SLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQE 117
+V++ + G G ++ KM + W + N
Sbjct: 150 --AKNVLIDG----VLG-SGKTWVALDVCLSYKVQ-CKMD--FKIFWLNL--K---NCNS 194
Query: 118 NDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQ--- 174
+ + ++MLQ I + +L H I++E L+
Sbjct: 195 PETV---LEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPY 243
Query: 175 -NALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA 233
N L+ +L +V + A FN
Sbjct: 244 ENCLL--------VLL-----------NV--QNAKA---------WNA---FN------- 263
Query: 234 YQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN---------EAM 284
C +IL + + + L A +H + + E
Sbjct: 264 -------LS-----C----KIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 285 SLFS---EMRDRELLPDGLTVHSLLCACIGRLT-----------LYQGMQVHSYIIKMGF 330
SL + R ++L + LT + + I ++ + II+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSL 363
Query: 331 DSNVPVCNAILTMYAKCSVLCNALLVFKELGKNAD------SVSWNSIIAACLQHNQAEE 384
+ P M+ + S VF +A S+ W +I + + +
Sbjct: 364 NVLEP--AEYRKMFDRLS-------VFPP---SAHIPTILLSLIWFDVIKSDVM-VVVNK 410
Query: 385 LFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLH-----CYITKTGLAFDVFVM 439
L + ++ Q K I+ + LE LH Y D +
Sbjct: 411 LHK--YSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 440 NGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCG-DEALKLFTRM----R 494
L D Y ++ +G+ E + LF + R
Sbjct: 467 PYL-DQYF-----------YSH-------------IGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 495 SLGVSPNLVTLVGVLTACSHVGLVEEGLH---LYR--IMENEYGIIPTREH-CSCVVDLL 548
L + TA + G + L Y+ I +N+ P E + ++D L
Sbjct: 502 FLE-----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND----PKYERLVNAILDFL 552
Query: 549 ARAG--CVHEAEDFINQMA 565
+ + + ++A
Sbjct: 553 PKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 64/473 (13%), Positives = 123/473 (26%), Gaps = 170/473 (35%)
Query: 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62
+ L K Y L+ N++ + + L K+ +L
Sbjct: 231 QAELRRLLKSKPYENCLLVLL------NVQNA-----------KAWNAFNLSCKI---LL 270
Query: 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIK 122
++ + + + SL+ M V S C
Sbjct: 271 TTR---FKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKYLDCR---------- 314
Query: 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVC--LGRQLHAHVIKSEHGSHLIAQNALIAM 180
Q L P + + + + + ++ H+
Sbjct: 315 --PQDL-----PRE--------VLTTNPRRLSIIAESIRDGLATWDNWKHV--------N 351
Query: 181 YTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240
K I+++ L L +P E
Sbjct: 352 CDKLTTIIES---------------------------SLNVL------------EPAE-- 370
Query: 241 FGSVFSACSNFARILFNE---IDSPDLAS-WNALIAGVASHSNANEAMSLFSEMRDRELL 296
+ +F S +F I + L+ W +I ++ M + +++ L+
Sbjct: 371 YRKMFDRLS-----VFPPSAHIPTILLSLIWFDVI--------KSDVMVVVNKLHKYSLV 417
Query: 297 ---PDGLT--VHSL----LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347
P T + S+ L++ + V Y I FDS+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSD-------------- 462
Query: 348 SVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFS------RMLASQIKPDH 401
+L + S I L++ + E LF R L +I+
Sbjct: 463 -----------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--- 508
Query: 402 ITFNDVMGACAKMASLEMVTQLHCY---ITKTGLAFDVFVMNGLMDIYIKCGS 451
+D A + L + QL Y I ++ V N ++D K
Sbjct: 509 ---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEE 557
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 1e-12
Identities = 20/187 (10%), Positives = 56/187 (29%), Gaps = 7/187 (3%)
Query: 388 LFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447
L + P ++ SL++ ++ L+ + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 448 KCGSLGSARKLFNFMEN-------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500
L A L + +++++LG+A+ G E + + ++ G++P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 501 NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDF 560
+L++ L + ++ G+ + ++ RA +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 561 INQMACD 567
+
Sbjct: 259 KPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 2e-08
Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 7/197 (3%)
Query: 279 NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN 338
+ A L R P + LL G+L+L +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 339 AILTMYAKCSVLCNALLVFKEL------GKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392
A L A + K +N+++ + +EL + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 393 LASQIKPDHITFNDVMGACAKM-ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451
+ + PD +++ + + + + +++ GL L+ +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 452 LGSARKLFNFMENPDVV 468
L + K+ P +
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.53 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.03 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.97 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.96 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.86 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.85 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.75 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.75 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.51 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.42 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.25 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.91 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.4 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.89 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.72 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.04 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.87 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.65 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.57 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.52 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.38 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.77 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.58 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.25 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.83 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.19 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.0 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.98 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.24 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.04 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.72 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.41 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.25 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.02 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.79 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.29 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.03 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.88 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.51 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.2 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=333.76 Aligned_cols=474 Identities=8% Similarity=-0.016 Sum_probs=251.9
Q ss_pred cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC--CCCeeehhHHhhhhh
Q 043608 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP--QRNVVSWTAMIAGCS 112 (579)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~ 112 (579)
...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+++. .++..+++.++.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 344444444444444444444444444432 2333444444444444444444444444442 234444444444444
Q ss_pred cCCChhhHHHHHHHHHHC---------------CCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHH
Q 043608 113 QNYQENDAIKLYIQMLQS---------------GVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNAL 177 (579)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~---------------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (579)
+.|++++|.++|+++... |.+++..+|..++.+|.+.|++++|.++|+++.+.++ .+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHH
Confidence 444444444444421111 1112234444555555555555555555555544331 122233333
Q ss_pred HHHHhcCCCHHHHHH--H-hcccCCC----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARN--V-FSGIARK----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN 250 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~ 250 (579)
...+...+..+.+.. + +..+... ....|+.++..|.+.|++++|.++|+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------------------- 301 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL------------------- 301 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------------------
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------------------
Confidence 333322222111110 0 1111111 1223333444444555555555555444332
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 251 FARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
+++..+|+.++..+.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+..
T Consensus 302 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 302 ----------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp ----------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred ----------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 2444445555555555555555555555554432 2234444455555555555555555555554332
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+.+..++..++.+|.+.|++++|.++|+++ . .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 334555566666666666666666666654 1 12245566777777777777777777777766653 33556666677
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--------CCC--hhhHHHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--------NPD--VVSWSSLILGYA 478 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~--~~~~~~l~~~~~ 478 (579)
.+|.+.|++++|.++++.+.+... .++.+++.++.+|.+.|++++|.++|+++. .|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 777777777777777777665542 256667777777777777777777776663 244 557777788888
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLL 548 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 548 (579)
+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+ ...+..+..+|
T Consensus 528 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI---SPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHH
Confidence 8888888888888877754 336677788888888888888888888887754 343 44555555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=330.27 Aligned_cols=482 Identities=10% Similarity=-0.032 Sum_probs=394.0
Q ss_pred HHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 80 YGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|+++.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667788888888888888999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-------------------cHhhHHHHHHHHHhcCChHH
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-------------------DVTSWGSMIAAFSKLGYELE 220 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~ 220 (579)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988653 678899999999999999999999999964433 47899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChHh-HHHHHHHHH---HH----H-----HHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043608 221 ALCHFNEMLHHGAYQPNEFI-FGSVFSACS---NF----A-----RILFNEIDSPDLASWNALIAGVASHSNANEAMSLF 287 (579)
Q Consensus 221 a~~~~~~m~~~~~~~p~~~~-~~~~l~~~~---~~----~-----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (579)
|.+.|++|.+.+ |+... +..+..... .. . .........+....|+.++..|.+.|++++|.++|
T Consensus 219 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 219 AKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999874 33322 222211100 00 0 01111111233445667788899999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCC
Q 043608 288 SEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNAD 365 (579)
Q Consensus 288 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~ 365 (579)
+++.+. +++..++..++..+.+.|++++|..+++.+.+.+. .+..++..++.++.+.|++++|.++++.+ ..+.+
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 999875 68899999999999999999999999999998873 47889999999999999999999999987 23347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.++++++.+.+ +.+..++..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 8899999999999999999999999998853 4467899999999999999999999999999765 3478899999999
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC--hhHHHHHHHHhhccC
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN--LVTLVGVLTACSHVG 516 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g 516 (579)
|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999863 56889999999999999999999999999876 66787 679999999999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC-hhHhhh
Q 043608 517 LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD-IVVWKS 575 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 575 (579)
++++|.+.++++.+. + +.+..+|..+..+|.+.|++++|.++++++ ...|+ ...|..
T Consensus 531 ~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 531 MYDAAIDALNQGLLL-S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp CHHHHHHHHHHHHHH-S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999875 3 446789999999999999999999999999 44565 444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=243.56 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc---------hhhHHHHHHHHHHcCCCCCch
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT---------LYQGMQVHSYIIKMGFDSNVP 335 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 335 (579)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788999999999999999999999999999999999999999986554 678999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA 412 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 412 (579)
+|+++|.+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 7889999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc
Q 043608 413 KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (579)
+.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=239.65 Aligned_cols=185 Identities=12% Similarity=0.148 Sum_probs=177.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCC---
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSN--- 279 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 279 (579)
..++.+|.+|++.|++++|+++|++|.+.|+ +||..+||+||.+|++.+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv---------------------------~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGV---------------------------QLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC---------------------------CCCHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------------CCCHhHHHHHHHHHHhCCchhh
Confidence 4578889999999999999999999999999 9999999999999987664
Q ss_pred ------hHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 280 ------ANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 280 ------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
++.|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 354 LLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 354 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999998 888999999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-25 Score=214.98 Aligned_cols=374 Identities=10% Similarity=0.030 Sum_probs=232.0
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
+...+.+.|++++|++.++.+.+. .|.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677888888888888888775 34455566667777788888888888888888765 667778888888888888
Q ss_pred ChhhHHHhhcCCC--CC-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc-ccHHHHHHHhcCCCcchhHHHHHH
Q 043608 85 SLEDARMGFDKMP--QR-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ-FTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 85 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++++|++.|+++. .| +..+|..+...+.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888775 24 3446778888888888888888888888775 3443 345556666777777888877777
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPN 237 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 237 (579)
++.+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...+++..+..
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 777653 23345555666666666666666666655432 134455555555555666666666655555442
Q ss_pred hHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh
Q 043608 238 EFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 317 (579)
+.+..++..+...+.+.|++++|.+.|+++.+. .|
T Consensus 234 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p-------------------- 268 (388)
T 1w3b_A 234 -----------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP-------------------- 268 (388)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS--------------------
T ss_pred -----------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC--------------------
Confidence 233455555555555556666666655555543 22
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS 395 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 395 (579)
.++.++..+...+.+.|++++|.+.|+++ ..+.+..+++.+...+...|++++|...++++.+.
T Consensus 269 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 269 --------------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp --------------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred --------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12334444555555555555555555443 12224455555566666666666666666665543
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC
Q 043608 396 QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCG 450 (579)
Q Consensus 396 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 450 (579)
.+.+..++..+...+.+.|++++|...++++.+... .+...+..+...+...|
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 123345555666666666666666666666654321 23455555555555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-25 Score=210.68 Aligned_cols=373 Identities=12% Similarity=0.073 Sum_probs=196.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI 187 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 187 (579)
..+.+.|++++|.+.++++.+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455667777777777776654 333 3344444555566667777766666665543 33455566666666666666
Q ss_pred HHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.. +.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~ 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------------PDLY 135 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------------TTCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcH
Confidence 666666655432 2 34456666666666666666666666666543 2334
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTM 343 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (579)
..+..+...+...|++++|.+.|+++.+. .| +..++..+...+...|++++|...++.+.+.+ +.+...+..+...
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 44555556666666666666666666553 23 23445555555555556666665555555543 2233444445555
Q ss_pred HHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHH
Q 043608 344 YAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVT 421 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 421 (579)
+...|++++|...+++. ...| +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443 1111 33444555555555555555555555554432 112334444444444444444444
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 422 QLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+.++++.+.. + ++..+|..+...+.+.|++++|.+.++++.+.. +.+
T Consensus 292 ~~~~~al~~~-p-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 338 (388)
T 1w3b_A 292 DCYNTALRLC-P-------------------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEF 338 (388)
T ss_dssp HHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTC
T ss_pred HHHHHHHhhC-c-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 4444444332 2 234445555555555555555555555555431 223
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcC
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAG 552 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 552 (579)
..++..+..++.+.|++++|...++++.+ ..|+ ...+..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHhHHHHHHHcc
Confidence 44555555555555555555555555553 2332 334445555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-22 Score=198.88 Aligned_cols=447 Identities=11% Similarity=-0.010 Sum_probs=275.0
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
.-..+.+.|++++|+..|+++... .|++.++..+..++...|++++|...++.+++.+ +.+...+..+..++.+.|
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 334566667777777777766665 1456666666666667777777777777766655 445566666666666666
Q ss_pred ChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 85 SLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 85 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
++++|...|+++.+ ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------- 152 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK--------------- 152 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------------
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH---------------
Confidence 66666666665542 122222223322222222222222222222221111111111100000
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-cHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----cC
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-DVTSWGSMIAAFSK---LGYELEALCHFNEMLH-----HG 232 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~ 232 (579)
......|+.......+..+...... ..+..+ +...+......+.. .|++++|...|+++.+ ..
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 153 -DKQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hhccCCchhHHHHHHHhhcCHHHHH-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0001112211111111111110000 111112 33444444444443 7888888888888877 32
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcc
Q 043608 233 AYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGR 312 (579)
Q Consensus 233 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (579)
. .|+..... +.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...
T Consensus 225 ~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 225 K-NNEDEKLK------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp T-STTCHHHH------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS
T ss_pred c-CccccccC------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC
Confidence 1 22211000 2345567777888888888888888888887753 3466777777888888
Q ss_pred cchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 313 LTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
|++++|...++.+.+.. +.+..++..+...+...|++++|...++.. ..+.+...+..+...+...|++++|...++
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888765 335677888888888899999999888876 222356678888888889999999999999
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHH---cCCHHHHHHHHhhC
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNGLMDIYIK---CGSLGSARKLFNFM 462 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 462 (579)
++.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+..++.. .|++++|...++.+
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 887763 335667888888889999999999999888754322 12 3378888889999 99999999999887
Q ss_pred CC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh
Q 043608 463 EN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503 (579)
Q Consensus 463 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 503 (579)
.+ .+...+..+...|.+.|++++|...+++..+. .|+..
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 63 45677888899999999999999999999985 45543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-21 Score=192.12 Aligned_cols=421 Identities=10% Similarity=-0.010 Sum_probs=300.7
Q ss_pred eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 043608 102 VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181 (579)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (579)
..|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++++.+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345666777888999999999999998864 788888889999999999999999999988875 34567788888888
Q ss_pred hcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH--------
Q 043608 182 TKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN-------- 250 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~-------- 250 (579)
...|++++|...|+++... +......++..+........+.+.+..+...+. .|+.............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA-TPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888776432 333444445544444444444444433322211 1111000000000000
Q ss_pred HHHHHhhcCC----------CCChhhHHHHHHHHHc---CCChHHHHHHHHHHHh-----CCCCC--------ChHHHHH
Q 043608 251 FARILFNEID----------SPDLASWNALIAGVAS---HSNANEAMSLFSEMRD-----RELLP--------DGLTVHS 304 (579)
Q Consensus 251 ~~~~~~~~~~----------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~ 304 (579)
.....+.... +.+...+......+.. .|++++|...|+++.. ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0000000000 1113344444444444 8999999999999887 32122 3446667
Q ss_pred HHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCH
Q 043608 305 LLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQA 382 (579)
Q Consensus 305 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 382 (579)
+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++.. .. +.+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 778888999999999999999888644 788888899999999999999999886 22 33667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
++|...+++..+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+.+.|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998864 33566788888899999999999999999887643 35678888899999999999999999887
Q ss_pred CC--CC-------hhhHHHHHHHHHh---cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 463 EN--PD-------VVSWSSLILGYAQ---FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 463 ~~--~~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+ |+ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 63 22 2378888889999 999999999999988753 33566888889999999999999999999886
Q ss_pred h
Q 043608 531 E 531 (579)
Q Consensus 531 ~ 531 (579)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-21 Score=191.57 Aligned_cols=429 Identities=10% Similarity=-0.027 Sum_probs=263.1
Q ss_pred cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhh
Q 043608 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGC 111 (579)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 111 (579)
...+..+...+.+.|++++|...|+++++.. +.++..+..+..+|.+.|++++|++.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3466677777888888888888888888776 56777888888888888888888888877652 3456677777788
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHHH
Q 043608 112 SQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRILD 189 (579)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 189 (579)
...|++++|...|+.+.. .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 888888888888863322 22211 1122333334445667777777755321 1111112234445666777788
Q ss_pred HHHHhcccCCCcHh---hHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHHHHHHhh
Q 043608 190 ARNVFSGIARKDVT---SWGSMIAAFSK--------LGYELEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNFARILFN 257 (579)
Q Consensus 190 a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~ 257 (579)
+...+......+.. ....+...+.. .|++++|..+++++.+... +.. .+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p---~~~~~~~~-------------- 241 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT---VDDPLREN-------------- 241 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C---CCHHHHHH--------------
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC---CcchhhHH--------------
Confidence 88777776654332 33333333222 2578999999999987641 110 0000
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhH
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
-..++..+...+...|++++|...++..... .|+...+..+...+...|+++.|...++.+.+.. +.+..++
T Consensus 242 -----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 242 -----AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHH
Confidence 0234666777888899999999999999875 5667777788888888899999999998888775 3356667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
..+...+...|++++|...|+.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 77777777777777777777765 112245566777777777777777777777776652 333456666666666777
Q ss_pred ChHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHHc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLA-----FDVFVMNGLMDIYIKC----------GSLGSARKLFNFMEN---PDVVSWSSLILGY 477 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 477 (579)
++++|...++.+.+.... .....+..+..++... |++++|...++++.+ .+...+..+...|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777666533211 1111122333344444 555555555554431 2334444555555
Q ss_pred HhcCCcHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~ 495 (579)
.+.|++++|.+.|++..+
T Consensus 473 ~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-20 Score=185.35 Aligned_cols=325 Identities=14% Similarity=0.066 Sum_probs=233.4
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 170 HLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 170 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|.+.|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 445566666667777777777777766543 356677777777778888888888888777764
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----HHHHHH------------HHHhh
Q 043608 247 ACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDG----LTVHSL------------LCACI 310 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~ 310 (579)
+.+...+..+...+.+.|++++|.+.|+++.+. .|+. ..+..+ ...+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777888888888888888877764 3433 333333 33467
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
..|++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+ ..+.+..++..+...+...|++++|...
T Consensus 155 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888888888888765 346777888888888899999998888876 2223677888888889999999999999
Q ss_pred HHHHHHCCCCCc-HhHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHHcCCH
Q 043608 389 FSRMLASQIKPD-HITFNDV------------MGACAKMASLEMVTQLHCYITKTGLAFD---VFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 389 ~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 452 (579)
|+++... .|+ ...+..+ ...+...|++++|...++.+.+...... ...+..+..++.+.|++
T Consensus 234 ~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 234 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 9988765 343 3333333 6778888999999999988887543211 34677888888899999
Q ss_pred HHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHH------------HhhccC
Q 043608 453 GSARKLFNFME--NP-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLT------------ACSHVG 516 (579)
Q Consensus 453 ~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~------------~~~~~g 516 (579)
++|...++++. .| +...|..+..+|...|++++|...++++.+. .|+ ...+..+.. .|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 99998888875 34 5778888888899999999999999998874 454 445555552 233344
Q ss_pred -----chHHHHHHHHHHH
Q 043608 517 -----LVEEGLHLYRIME 529 (579)
Q Consensus 517 -----~~~~a~~~~~~~~ 529 (579)
+.+++.+.++++.
T Consensus 390 ~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp SSTTCCTTHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHH
Confidence 5566677777643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-20 Score=183.72 Aligned_cols=334 Identities=10% Similarity=0.032 Sum_probs=273.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
++..+..+...+.+.|++++|.++|+++.+.. +.+...|..+..++...|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHCCCH
Confidence 56789999999999999999999999998774 56788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc---hhHHHH------------HHHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV---PVCNAI------------LTMYA 345 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~ 345 (579)
++|...|+++.+.+ +.+...+..+...+...|++++|...++.+.+... .+. ..+..+ ...+.
T Consensus 77 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 77 KAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998863 33567788888999999999999999999998652 233 455444 44488
Q ss_pred hcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 043608 346 KCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
..|++++|...|+.+ ..+.+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999987 223377889999999999999999999999998763 45678899999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHH------------HHHHHHcCCHHHHHHHHhhCCC--CC-----hhhHHHHHHHHHhcCCcH
Q 043608 424 HCYITKTGLAFDVFVMNGL------------MDIYIKCGSLGSARKLFNFMEN--PD-----VVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~ 484 (579)
++.+.+.... +...+..+ ...+.+.|++++|...|+++.+ |+ ...|..+...+.+.|+++
T Consensus 234 ~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 234 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 9999876432 34444444 7889999999999999999863 55 347888899999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHH------------HHHHhc
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVV------------DLLARA 551 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~------------~~~~~~ 551 (579)
+|+..++++.+.. +.+...|..+..+|...|++++|...++++.+ ..|+ ...+..+. ..|...
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999998753 33678999999999999999999999999985 4565 34555555 234444
Q ss_pred C-----ChhHHHHHHHhh--cCCCCh
Q 043608 552 G-----CVHEAEDFINQM--ACDADI 570 (579)
Q Consensus 552 g-----~~~~A~~~~~~~--~~~~~~ 570 (579)
| +.+++.+.++++ ..+||.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 5 667788888874 455653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-20 Score=186.69 Aligned_cols=418 Identities=11% Similarity=0.017 Sum_probs=253.8
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
|..+...+.+.|++++|...|+++.... +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3444444444555555555555544432 2233444444445555555555555555554443 2234444455555555
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCChHhHHHHHHHHHHH-HHHHhh
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHG-----AYQPNEFIFGSVFSACSNF-ARILFN 257 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~~l~~~~~~-~~~~~~ 257 (579)
.|++++|...|+.+ ..+.......+..+...+...+|...++++.... ...|+.......+...... ....+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 55555555555422 1111112222333333444455555555553320 0012222222211111000 111111
Q ss_pred cCCCCChh---hHHHHHHHHHcC--------CChHHHHHHHHHHHhCCCCCCh--------HHHHHHHHHhhcccchhhH
Q 043608 258 EIDSPDLA---SWNALIAGVASH--------SNANEAMSLFSEMRDRELLPDG--------LTVHSLLCACIGRLTLYQG 318 (579)
Q Consensus 258 ~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a 318 (579)
.....+.. ....+...+... |++++|..+++++.+. .|+. ..+..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111111 222333332222 4788899999888865 4442 2355555677788999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 319 MQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
...++.+.+.. |+...+..+...+...|++++|.+.++.. ..+.+..++..+...+...|++++|...+++..+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999998875 34778888888899999999999999876 222357788888899999999999999999988763
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----C----Ch
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----P----DV 467 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~ 467 (579)
+.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+ + ..
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3345678888888899999999999999888765 33567888888999999999999999888763 1 11
Q ss_pred hhHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQF----------GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 468 ~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2234445667777 89999999999988753 335678888889999999999999999998864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-17 Score=154.75 Aligned_cols=309 Identities=6% Similarity=-0.051 Sum_probs=152.6
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
+..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHccCHH
Confidence 3455566666677777777777777766653 345566666667777777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC--CCchhHHHH------------HHHHHhc
Q 043608 282 EAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD--SNVPVCNAI------------LTMYAKC 347 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~ 347 (579)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... .+...+..+ ...+...
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777666542 123345555555566666666666666666554320 122222222 2344445
Q ss_pred CChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
|++++|.+.++.+ ..+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555443 111133444444555555555555555555544432 2233444444444445555555555554
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-h--
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-L-- 502 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-- 502 (579)
...+.... +...+..+...- .......+...+.+.|++++|...++++.+.. |+ .
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 270 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY 270 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH
T ss_pred HHHhhCcc-chHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH
Confidence 44433211 111111000000 00001112344555566666666666555532 22 1
Q ss_pred --hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 --VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..+..++...|++++|...+++..+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12333455555566666666666655543 1223445555556666666666666666555
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-17 Score=153.97 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=179.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTM 343 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (579)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455666777777788888888887776642 2234455555555666666666666666665553 2233445555555
Q ss_pred HHhcCChHHHHHHHHHc-CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH
Q 043608 344 YAKCSVLCNALLVFKEL-GKNA----DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE 418 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 418 (579)
+...|++++|...|+.. ...| +...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555544 2222 1111111110000 001122245667778888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+|.+.++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887776543 3567777788888888888888888887653 4567788888888889999999999998887
Q ss_pred CCCCCC-hhHHH------------HHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-----chhHHHHHHHHhcCChhHH
Q 043608 496 LGVSPN-LVTLV------------GVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-----EHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 496 ~~~~p~-~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 557 (579)
. .|+ ...+. .+...+...|++++|...++++.+. .|+. ..+..+..++.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 5 343 33332 2366789999999999999999875 3443 2355688999999999999
Q ss_pred HHHHHhh-cCCCC-hhHhh
Q 043608 558 EDFINQM-ACDAD-IVVWK 574 (579)
Q Consensus 558 ~~~~~~~-~~~~~-~~~~~ 574 (579)
.+.+++. ...|+ ..+|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCcccHHHHH
Confidence 9999988 33453 44443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-14 Score=149.72 Aligned_cols=477 Identities=11% Similarity=0.032 Sum_probs=323.7
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC----------CCCee------
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP----------QRNVV------ 102 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~------ 102 (579)
..|+..+-+++++.--...++.-...| ..++.++|+|+..|...++-.+..-.=+... ++|+.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 345555555566666666677777777 7788999999999987654433211111110 11211
Q ss_pred -----------------ehhHHhhhhhcCCChhhHHHHH-----------HHHHHCCC--CCCcccHHHHHHHhcCCCcc
Q 043608 103 -----------------SWTAMIAGCSQNYQENDAIKLY-----------IQMLQSGV--MPGQFTFGSIIKACSGLGSV 152 (579)
Q Consensus 103 -----------------~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~g~--~p~~~~~~~li~~~~~~~~~ 152 (579)
.|-...+-+.+..+.+-=-.++ +.-....+ .-++.-.....++|...|.+
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp 1001 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLP 1001 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCH
Confidence 1222222222333322211111 11111111 12333446677888899999
Q ss_pred hhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 153 CLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 153 ~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.+|++++++....+- ..+...-+.++.+..+. +..+..+..++...-+ ...+...+...|.+++|..+|++..
T Consensus 1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~- 1076 (1630)
T 1xi4_A 1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD- 1076 (1630)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-
Confidence 999999998884321 13345556666666666 4455555555554323 3446778888999999999998852
Q ss_pred cCCCCCChHhHHHHHHHHHHH--HHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 043608 231 HGAYQPNEFIFGSVFSACSNF--ARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCA 308 (579)
Q Consensus 231 ~~~~~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (579)
-.......++....+. |..+.++. .+..+|..+..++...|++++|.+.|.+. -|...|..++.+
T Consensus 1077 -----~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1077 -----VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQA 1143 (1630)
T ss_pred -----CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHH
Confidence 1122223333332222 44445544 44677889999999999999999999663 467788889999
Q ss_pred hhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
|.+.|+++++.+++...++.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|...
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999988875 34444556999999999988644443 344667778899999999999999999
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 043608 389 FSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV 468 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 468 (579)
|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|...|++..|...... ...+..
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d 1281 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD 1281 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH
Confidence 9984 47899999999999999999999876 3668899999999999999999998775 445566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHHHHHHHHHHHHhhCCCC------Ccch
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH--VGLVEEGLHLYRIMENEYGIIP------TREH 540 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~ 540 (579)
.+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|. ++.+++| +...
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~---~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH---HhcccchHhHHHHHHHH
Confidence 67789999999999999999998887543 2233355555555554 344444444444 4434444 4667
Q ss_pred hHHHHHHHHhcCChhHHHHH
Q 043608 541 CSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~ 560 (579)
|..++-.|.+.|+++.|...
T Consensus 1358 W~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999843
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-15 Score=152.74 Aligned_cols=377 Identities=11% Similarity=0.078 Sum_probs=211.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCC--CCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKC--QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQN 114 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (579)
--....++|...|.+.+|.++++.+.-.+- ..+....+.++....+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 334455666677777777777777663220 12334444455444443 3344333333333211 33355556667
Q ss_pred CChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHh
Q 043608 115 YQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVF 194 (579)
Q Consensus 115 ~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (579)
|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777776421 1111122221 456677776666643 34566777777777777777777777
Q ss_pred cccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 043608 195 SGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGV 274 (579)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 274 (579)
.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-----------------------------~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-----------------------------RESYVETELIFAL 1177 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----------------------------ccccccHHHHHHH
Confidence 553 456666667777777777777777776655542 2222222366666
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
.+.+++++...+. . .|+...+..+...|...|++++|..+|... ..|..+...+.+.|+++.|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 6666666433332 1 334445555666666666666666666653 25666666666666666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF 434 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 434 (579)
+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-
T Consensus 1242 EaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1242 DGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 6666552 456666666666666666666554432 22344445566666666677777766665555333 23
Q ss_pred chhHHHHHHHHHHHc--CCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCCcHHHH
Q 043608 435 DVFVMNGLMDIYIKC--GSLGSARKLFNFMEN--------PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
....|..|...|++. +++-++.+.|..-.. -+...|.-++..|.+.|+++.|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344555555555543 234444444443222 23445666666666777776666
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-16 Score=151.53 Aligned_cols=335 Identities=10% Similarity=-0.019 Sum_probs=220.7
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc----CCCHHHHHHHhcccCCC-cHhhHHHHHHHHHh----cCChH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK----FDRILDARNVFSGIARK-DVTSWGSMIAAFSK----LGYEL 219 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 219 (579)
.+++++|..++++..+.| +...+..|...|.. .+++++|.+.|++..+. +...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555442 33444445555555 55666666666554332 44555556666665 56777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCC
Q 043608 220 EALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS----HSNANEAMSLFSEMRDREL 295 (579)
Q Consensus 220 ~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 295 (579)
+|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.|
T Consensus 133 ~A~~~~~~a~~~~------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 133 ESVKWFRLAAEQG------------------------------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp HHHHHHHHHHHTT------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 7777777766543 23444555555554 567777777777776654
Q ss_pred CCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHcCCCCChh
Q 043608 296 LPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK----CSVLCNALLVFKELGKNADSV 367 (579)
Q Consensus 296 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 367 (579)
+...+..+...+.. .++.++|...++...+.+ ++..+..+...|.. .+++++|.+.|+..-...+..
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 256 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI 256 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 44455555555554 677777777777777665 44556666666665 677888888887764334566
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCchhH
Q 043608 368 SWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM-----ASLEMVTQLHCYITKTGLAFDVFV 438 (579)
Q Consensus 368 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 438 (579)
.+..+...|.. .++.++|..+|++..+.| +...+..+...+... +++++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 66667777776 778888888888877654 334555555666555 78888888888877765 4456
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 439 MNGLMDIYIKCG---SLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 439 ~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
+..+...|...| +.++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...+..+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666777776655 67788888877653 566777777788877 788888888888888765 4566777777
Q ss_pred Hhhc----cCchHHHHHHHHHHHHh
Q 043608 511 ACSH----VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~----~g~~~~a~~~~~~~~~~ 531 (579)
.|.. .+++++|...|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 7776 78888888888888875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-15 Score=149.19 Aligned_cols=392 Identities=11% Similarity=-0.030 Sum_probs=246.1
Q ss_pred hhhHHHHHHHhCCCCChhHHHHHHHHHHc----cCChhhHHHhhcCCCC-CCeeehhHHhhhhhc----CCChhhHHHHH
Q 043608 54 GRKVHDHILLSKCQPDVVLQNHILNMYGK----CGSLEDARMGFDKMPQ-RNVVSWTAMIAGCSQ----NYQENDAIKLY 124 (579)
Q Consensus 54 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 124 (579)
+...+....+ ..++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|.+.|
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3444444443 3355566666666655 4555555555554432 233444444444444 45555555555
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc----CCCHHHHHHHhcccCCC
Q 043608 125 IQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK----FDRILDARNVFSGIARK 200 (579)
Q Consensus 125 ~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 200 (579)
++..+.| +...+. .|...|.. .+++++|...|++..+.
T Consensus 103 ~~a~~~~---~~~a~~-----------------------------------~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 103 KKAALKG---LPQAQQ-----------------------------------NLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHTT---CHHHHH-----------------------------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHH-----------------------------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5554433 223333 33344443 44555555555443332
Q ss_pred -cHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 043608 201 -DVTSWGSMIAAFSK----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVA 275 (579)
Q Consensus 201 -~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (579)
+..++..+...|.. .++.++|.+.|++..+.| +...+..+...|.
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------------------------------~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------------------------------NVWSCNQLGYMYS 194 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------------------CHHHHHHHHHHHh
Confidence 34455555555555 566777777777666543 3445555555665
Q ss_pred c----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh-
Q 043608 276 S----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK- 346 (579)
Q Consensus 276 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 346 (579)
. .++.++|.+.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 5 677777777777776654 33444444444443 667777777777777654 34555666666666
Q ss_pred ---cCChHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC---
Q 043608 347 ---CSVLCNALLVFKELGKNADSVSWNSIIAACLQH-----NQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA--- 415 (579)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--- 415 (579)
.++.++|.+.|+..-..-+...+..+...|... +++++|..+|++..+.| +...+..+...+...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 788888888888874444667777788888877 89999999999988875 3445566666665545
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHH
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEA 486 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 486 (579)
+.++|.+.+++..+.+ ++..+..|...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7889999999988764 67788888888888 8999999999998764 567788888888888 8999999
Q ss_pred HHHHHHHHhCCCC-C-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 487 LKLFTRMRSLGVS-P-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 487 ~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|++..+.+.. | +......+...+ ..+.+.+.+..++..+
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~--~~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLT--AKQLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcC--HhHHHHHHHHHHHHHH
Confidence 9999999987643 2 233333333222 2344454444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=146.48 Aligned_cols=377 Identities=11% Similarity=0.105 Sum_probs=182.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+.+..++.+.|++++|++.|.+. +|+.+|..++.++...|++++|..+++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4889999999999999999999653 47779999999999999999999988887764 45578899999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.
T Consensus 105 ~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 105 AKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999988864 78889999999999999999999999976 479999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+++...... +-....
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ 243 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGM 243 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHH
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHH
Confidence 87 378999999999999999999998888765 444445578899999999999999999987553 222233
Q ss_pred HHHHHHHHHHH--------HHHHhhcCCC-------CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 043608 241 FGSVFSACSNF--------ARILFNEIDS-------PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL 305 (579)
Q Consensus 241 ~~~~l~~~~~~--------~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 305 (579)
+..+--.+++. .+..+.++.- .+...|..+.-.|...++++.|... |.+. +|+...-..+
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f 318 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQF 318 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHH
Confidence 33332222211 2222333322 2466788888888888888877763 3333 2333333333
Q ss_pred HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEEL 385 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 385 (579)
.....+..+.+--.+.....++. .+...+.|+.++...=|..++.++|+..+.-|=+..|-.-+ +..+...+
T Consensus 319 ~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v----~~~n~~~v 390 (449)
T 1b89_A 319 KDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV----QNHNNKSV 390 (449)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHH----HTTCCHHH
T ss_pred HHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHH----HHhhHHHH
Confidence 33334444444333333333322 34457777777777777777777777776554444432111 12333444
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHH
Q 043608 386 FRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQ 422 (579)
Q Consensus 386 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 422 (579)
-+.+.++.-. .-|..+...-|.+|-.-.....|.+
T Consensus 391 nealn~l~ie--eed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 391 NESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 4444443221 2355555555555544444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=148.45 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=156.6
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 445556666666666777777777777766542 2233444445556666666666666666666654 23455566666
Q ss_pred HHHHhcC-ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH
Q 043608 342 TMYAKCS-VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE 418 (579)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 418 (579)
..+...| ++++|...|+.. ...| +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 6666666 666666666654 2222 34456666666666666666666666665542 223344444555666666666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CChhhHHHHHHHHHhcCCcHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------------PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a 486 (579)
+|...++...+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 22445555566666666666666665554431 1133555555566666666666
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLL 548 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 548 (579)
...+++..+.. +.+...+..+...+...|++++|...+++..+ +.| +...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG---LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT---TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc---cCCCchHHHHHHHHHH
Confidence 66666655542 22344555555666666666666666665543 233 233444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=150.42 Aligned_cols=280 Identities=11% Similarity=0.113 Sum_probs=119.0
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
+.|++++|.++++++ ++..+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566666666655 22346667777777777777777777543 4555777777777777777777776665
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLC 307 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 307 (579)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+..
T Consensus 87 ark~-----------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 87 ARKK-----------------------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred HHHh-----------------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 5543 3445667777778888888877777664 366667888888
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFR 387 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 387 (579)
.|...|.++.|..+|..+ ..|..++.++.+.|++++|.+.++..+ ++.+|..++.+|...|+++.|..
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHH
Confidence 888888888888888755 367788888888888888888888773 67788888888888888888855
Q ss_pred HHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc--CCHHHHHHHHhhCCC-
Q 043608 388 LFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC--GSLGSARKLFNFMEN- 464 (579)
Q Consensus 388 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~- 464 (579)
....+. ..|+. ...++..|.+.|.+++|..+++...... +.....|+.|.-+|++- +++.+..+.|..-..
T Consensus 199 ~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 199 CGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp TTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 444321 23333 4457777888888888888888776544 44566667666666654 345555555554332
Q ss_pred -------CChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 465 -------PDVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 465 -------~~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
.+...|.-+...|...++++.|...
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2466788888888888998888763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-16 Score=146.08 Aligned_cols=286 Identities=12% Similarity=-0.013 Sum_probs=202.7
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~~~~~~~~~~~ 72 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----------------------------PFHASCLPVHIGTLVELNKA 72 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCTTTHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCChhhHHHHHHHHHHhhhH
Confidence 44455666667777777777777777777664 34455566666777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhccc-chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRL-TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.
T Consensus 73 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 73 NELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777776642 234556666666777777 7777777777777664 33566677777888888888888888877
Q ss_pred c--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 043608 360 L--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG------ 431 (579)
Q Consensus 360 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 431 (579)
. ..+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+..
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 5 112245566667788888888888888888887763 4456677777888888888888888888777532
Q ss_pred --CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHH
Q 043608 432 --LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTL 505 (579)
Q Consensus 432 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~ 505 (579)
.+....++..+..+|.+.|++++|...+++..+ .+...|..+...|...|++++|.+.+++..+. .| +...+
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 307 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSV 307 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHH
Confidence 133456788888888888888888888887762 45677888888888889999999998888774 34 45667
Q ss_pred HHHHHHh-hccCchH
Q 043608 506 VGVLTAC-SHVGLVE 519 (579)
Q Consensus 506 ~~l~~~~-~~~g~~~ 519 (579)
..+..++ ...|+.+
T Consensus 308 ~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 308 TMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhCchh
Confidence 7777766 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-17 Score=154.67 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=200.4
Q ss_pred CCChHHHHH-HHHHHHhCCC-CC--ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHH
Q 043608 277 HSNANEAMS-LFSEMRDREL-LP--DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 277 ~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (579)
.|++++|.+ .+++...... .| +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554432210 11 23345555666666666666666666666654 3355666677777777777777
Q ss_pred HHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH---------------HHHHHhccC
Q 043608 353 ALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND---------------VMGACAKMA 415 (579)
Q Consensus 353 a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~ 415 (579)
|.+.|+.. ..+.+..++..+...+...|++++|...++++...... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777765 12225667777777888888888888888887775321 1111111 233334889
Q ss_pred ChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFT 491 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 491 (579)
++++|...++++.+..... +..++..+..+|.+.|++++|...++++.+ .+...|..+...+...|++++|...++
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998765432 578889999999999999999999998763 456789999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC---------CCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII---------PTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
++.+.. +.+...+..+..++...|++++|...++++.+...-. ....++..+..+|.+.|+.++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 998863 3457789999999999999999999999988642111 014688999999999999999999887
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
+-
T Consensus 355 ~~ 356 (368)
T 1fch_A 355 RD 356 (368)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-15 Score=152.07 Aligned_cols=399 Identities=11% Similarity=0.044 Sum_probs=205.5
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCeeehhHHhh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVVSWTAMIA 109 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 109 (579)
|-+...|..++.. .+.|++++|..+|+.+++.. |.+...|...+..+.+.|++++|..+|++..+ |+...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4455667777763 56677777777887777654 55666777777777777778888777777664 55555555554
Q ss_pred hh-hcCCChhhHHH----HHHHHHHC-CCCCC-cccHHHHHHHhcC---------CCcchhHHHHHHHHHHhccCCChhH
Q 043608 110 GC-SQNYQENDAIK----LYIQMLQS-GVMPG-QFTFGSIIKACSG---------LGSVCLGRQLHAHVIKSEHGSHLIA 173 (579)
Q Consensus 110 ~~-~~~~~~~~a~~----~~~~~~~~-g~~p~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (579)
.. ...|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 55555432 43333 3344444443322 5677777777777776211111122
Q ss_pred HHHHHHHH-------------hcCCCHHHHHHHhcc-------cC------CCc--------HhhHHHHHHHHHhc----
Q 043608 174 QNALIAMY-------------TKFDRILDARNVFSG-------IA------RKD--------VTSWGSMIAAFSKL---- 215 (579)
Q Consensus 174 ~~~l~~~~-------------~~~g~~~~a~~~~~~-------~~------~~~--------~~~~~~l~~~~~~~---- 215 (579)
|....... ...++++.|..+++. +. .|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22221110 123445556554433 11 111 23444444332221
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc-------CCChH---
Q 043608 216 GYE----LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS-------HSNAN--- 281 (579)
Q Consensus 216 ~~~----~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~--- 281 (579)
++. .++..+|++..... +.+...|......+.+ .|+++
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~----------------------------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL----------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 122 25566666666542 4567777777777764 68876
Q ss_pred ----HHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC-chhHHHHHHHHHhcCChHHHHH
Q 043608 282 ----EAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN-VPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 282 ----~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
+|..+|+..... +.| +...+..+...+.+.|++++|..+++.+.+.... + ..+|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777642 233 3444555555555666666666666666654211 1 1244444444444555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCC
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA-CAKMASLEMVTQLHCYITKTGLAF 434 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 434 (579)
+|+. ..+.. +.+...+...... +...|+.++|..+|+...+.. +.
T Consensus 378 ~~~~--------------------------------Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 378 IFKK--------------------------------AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHHH--------------------------------HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHH--------------------------------HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 5544 44321 1111111111111 112444555555555444332 12
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-D----VVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
++..+..++..+.+.|+.++|..+|++... | + ...|...+......|+.+.+.++++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555554431 1 1 124555555555666666666666666553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-15 Score=148.65 Aligned_cols=401 Identities=9% Similarity=0.027 Sum_probs=251.7
Q ss_pred CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC--CcHhhHHHHHHHH
Q 043608 135 GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR--KDVTSWGSMIAAF 212 (579)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 212 (579)
+...|..++.. ...|+++.|..+++++++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33445555542 44556666666666655542 33455566666666666777777777766544 3444555555422
Q ss_pred -HhcCChHHHHH----HHHHHHhc-CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---------C
Q 043608 213 -SKLGYELEALC----HFNEMLHH-GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS---------H 277 (579)
Q Consensus 213 -~~~~~~~~a~~----~~~~m~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~ 277 (579)
...|+.+.|.+ +|+..... |. . .++...|...+....+ .
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~-~-------------------------~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGM-E-------------------------IMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTT-S-------------------------TTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCC-C-------------------------cccHHHHHHHHHHHhcCCCcccHHHH
Confidence 34566666555 55555433 33 1 2334455555554433 5
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHH---h----------hcccchhhHHHHHHHHH------HcC---CCCC--
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCA---C----------IGRLTLYQGMQVHSYII------KMG---FDSN-- 333 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~----------~~~~~~~~a~~~~~~~~------~~~---~~~~-- 333 (579)
|+++.|..+|+........+....|...... + ...+++..|..++..+. +.. ++|+
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 7888999999888873111111223221111 0 13455666766666532 111 2333
Q ss_pred ------chhHHHHHHHHHhc----CCh----HHHHHHHHHc--CCCCChhhHHHHHHHHHh-------cCCHH-------
Q 043608 334 ------VPVCNAILTMYAKC----SVL----CNALLVFKEL--GKNADSVSWNSIIAACLQ-------HNQAE------- 383 (579)
Q Consensus 334 ------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~--~~~~~~~~~~~l~~~~~~-------~~~~~------- 383 (579)
...|...+...... ++. +++..+|++. ..+.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 13444444332221 232 3666777765 222366778777777765 68876
Q ss_pred HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 384 ELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 384 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+|..+|++..+.-.+.+...+..++..+...|++++|..+++++.+.........|..++..+.+.|++++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999876323345777888888888999999999999999885322113578888888889999999999999887
Q ss_pred C--CC-hhhHHHHHHH-HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--
Q 043608 464 N--PD-VVSWSSLILG-YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-- 537 (579)
Q Consensus 464 ~--~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 537 (579)
+ |+ ...|...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++........|+
T Consensus 384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 5 22 2222222222 336899999999999998752 335678889999999999999999999999875222332
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...|...+......|+.+.+..+.+++
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 226777788888899999999998887
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=151.60 Aligned_cols=267 Identities=14% Similarity=0.047 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 043608 174 QNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN 250 (579)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~ 250 (579)
+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|.+.|+++.+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------ 128 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------------ 128 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC------------------
Confidence 44444455555555555555544432 234455566666666666666666666666553
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 251 FARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLT-VHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
+.+..++..+...+...|++++|.+.++++.... |+... +... +.... .
T Consensus 129 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~-----------~ 178 (368)
T 1fch_A 129 ----------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAG-----------G 178 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------
T ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhh-----------h
Confidence 3455566666666666666666666666666542 22111 1000 00000 0
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA---DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
..+ ...+..+.. +...|++++|...|+.+ ...| +...+..+...+...|++++|...++++.... +.+...+.
T Consensus 179 ~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 179 AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp --------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 000 000001111 22455555555555554 1111 34555556666666666666666666655542 22345555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C-----------hhhHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-D-----------VVSWS 471 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-----------~~~~~ 471 (579)
.+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++.+ | + ...|.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 66666666666666666666665543 22455566666666666666666666665542 1 1 45667
Q ss_pred HHHHHHHhcCCcHHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~ 492 (579)
.+..+|...|++++|..++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 777777777777777766653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-16 Score=147.29 Aligned_cols=259 Identities=11% Similarity=0.019 Sum_probs=186.9
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhc
Q 043608 302 VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQH 379 (579)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~ 379 (579)
+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|...|++. ..+.+..++..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 4444444444455555555555444443 234556666677777777777777777665 1222566788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCcH-----------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHH
Q 043608 380 NQAEELFRLFSRMLASQIKPDH-----------ITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FDVFVMNGLMDIYI 447 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 447 (579)
|++++|...++++.+.. |+. ..+..+...+...|++++|...++++.+.... ++..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887642 321 22334577888899999999999999877543 26788899999999
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 448 KCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..|++++|...++++.+ .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998763 457889999999999999999999999999863 33477899999999999999999999
Q ss_pred HHHHHHhhCCC----------CCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 525 YRIMENEYGII----------PTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 525 ~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++++.+...-. .+...+..+..++...|+.+.|..+.++-
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99988652110 12568899999999999999999888763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-16 Score=146.65 Aligned_cols=274 Identities=11% Similarity=-0.052 Sum_probs=177.3
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----------------------------PGDAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------cCCHHHHHHHHHHHHHCCCH
Confidence 44567888888888899999999998888764 45677888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 116 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~------------------- 174 (365)
T 4eqf_A 116 QAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK------------------- 174 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC------------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------
Confidence 88888888887652 223555666666666677777777776666654311 000010000
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK-PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 439 (579)
.....+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++
T Consensus 175 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 250 (365)
T 4eqf_A 175 ---GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLW 250 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 01223334455666667777777777776665311 145666666777777777777777777766654 2356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----------CChhHH
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-----------PNLVTL 505 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------p~~~~~ 505 (579)
..+..+|.+.|++++|...++++.+ | +...|..+...|.+.|++++|...++++.+.... .+...|
T Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 7777777777777777777776652 3 4667777888888888888888888887753211 025678
Q ss_pred HHHHHHhhccCchHHHHHHHHH
Q 043608 506 VGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
..+..++...|+.+.+....++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888888888877665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-15 Score=134.64 Aligned_cols=249 Identities=8% Similarity=-0.003 Sum_probs=139.8
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..|+++.|+...+........+.......+.++|...|+++.|+..++....++..++..+...+...++.++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34555555555544332221111223344566777777777777777665444556666777777777777777777777
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLC 307 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 307 (579)
+...+. . +.+...+..+...+...|++++|++.++. +.+...+..+..
T Consensus 91 ll~~~~-~-------------------------P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 91 EMSRSV-D-------------------------VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHSCC-C-------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHhccc-C-------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 766543 0 22344455555667777777777777765 345556666666
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhH---HHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVC---NAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQA 382 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 382 (579)
.+.+.|++++|.+.++.+.+.. |+.... ...+..+...|++++|..+|+++ ..+.+...++.+..++.+.|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 6666777777777777666653 222111 11223333345666666666555 2223455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH-HHHHHHHHHHcC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM-VTQLHCYITKTG 431 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 431 (579)
++|...|++..... +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 66666666655542 2244455555555555555543 445555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=138.50 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=153.2
Q ss_pred HHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 043608 176 ALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFA 252 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~ 252 (579)
.+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+..
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 85 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------------- 85 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 334444455555555555544332 244556666666777777777777777766653
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHH--------------HH-Hhhcccchh
Q 043608 253 RILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-TVHSL--------------LC-ACIGRLTLY 316 (579)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~ 316 (579)
+.+...+..+...+...|++++|.+.++++... .|+.. .+..+ .. .+...|+++
T Consensus 86 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 86 --------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHH
T ss_pred --------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 345566666777777777777777777777654 22222 11111 11 256667777
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 317 QGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
+|...++.+.+.. +.+..++..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777776664 235566666677777777777777777664 1222455666677777777777777777777665
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 395 SQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF-----------DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
.. +.+...+..+...+...|++++|.+.++.+.+..... +...+..+..++.+.|+.++|..+++...
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 42 2345566666666667777777777776666443221 34555666666666666666666665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-15 Score=139.25 Aligned_cols=261 Identities=13% Similarity=-0.035 Sum_probs=183.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILT 342 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (579)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---------- 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---------- 87 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC----------
Confidence 34455666677777777777777777776542 1233344444445555555555555555554442 11
Q ss_pred HHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHHHH--------------
Q 043608 343 MYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFNDV-------------- 407 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l-------------- 407 (579)
+...+..+...+...|++++|...++++.+.. |+. ..+..+
T Consensus 88 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 88 ----------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------------------
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555566666666666666655542 221 111111
Q ss_pred HH-HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc
Q 043608 408 MG-ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 408 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 483 (579)
.. .+...|++++|...++++.+... .+...+..+...|.+.|++++|...++++.+ .+...|..+...+...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 22 36778889999999998887653 3678888899999999999999999988763 4567888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------------cchhHHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-------------REHCSCVVDLLAR 550 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~ 550 (579)
++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+ ...+..+..++.+
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999998863 335778899999999999999999999999865 233 5678889999999
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|..++++.
T Consensus 299 ~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 299 MNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999998766
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=138.96 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=121.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG--LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455567777777777655432 3332 2333444555666666655544332 123344445555555555555
Q ss_pred hHHHHHHHHHc---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 350 LCNALLVFKEL---GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 350 ~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
.++|++.++++ +..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666555553 1112 333344444555555666666655554 2344455555555555566666666555
Q ss_pred HHHHcCCCCchhHH---HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 043608 426 YITKTGLAFDVFVM---NGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS 499 (579)
Q Consensus 426 ~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 499 (579)
.+.+.. |+.... ..++..+...|++++|..+|+++.+ .+...|+.+..++.+.|++++|...+++..+.. +
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 555443 221111 1122223333555555555555542 334445555555555555555555555555432 1
Q ss_pred CChhHHHHHHHHhhccCchHH-HHHHHHHHHH
Q 043608 500 PNLVTLVGVLTACSHVGLVEE-GLHLYRIMEN 530 (579)
Q Consensus 500 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 530 (579)
-+..++..++..+...|+.++ +.++++++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 234455555555555555543 3455555553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=166.77 Aligned_cols=132 Identities=14% Similarity=0.016 Sum_probs=117.1
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEML---HHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS 278 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 278 (579)
..+|+++|++|++.|++++|.++|++|. ..|+ .||+.+||+||++|++.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---------------------------~PdvvTYNtLI~Glck~G 179 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---------------------------LLTLDMYNAVMLGWARQG 179 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---------------------------TCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---------------------------CCCHhHHHHHHHHHHhCC
Confidence 4689999999999999999999998876 4577 899999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch-hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 043608 279 NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL-YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVF 357 (579)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (579)
++++|.++|++|.+.|+.||..||+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++.
T Consensus 180 ~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999985 789999999999999999999999988777655444444443
Q ss_pred HHc
Q 043608 358 KEL 360 (579)
Q Consensus 358 ~~~ 360 (579)
.++
T Consensus 260 P~f 262 (1134)
T 3spa_A 260 PTF 262 (1134)
T ss_dssp CCC
T ss_pred ccc
Confidence 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-17 Score=164.40 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL------GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND 406 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 406 (579)
...+|+++|++||+.|++++|.++|++| +..||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457888999999999999999888665 4678999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 407 VMGACAKMASL-EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 407 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 99999999874 78899999999999999999999988877766555544444333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-14 Score=136.24 Aligned_cols=347 Identities=7% Similarity=-0.053 Sum_probs=233.1
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh---hhHHHhhcCCCCCCeeehhHHhhhhhcCC-
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL---EDARMGFDKMPQRNVVSWTAMIAGCSQNY- 115 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 115 (579)
.+...+.+.|++++|.+.|+...+.| ++..+..+...|...|+. ++|.+.|++..+.++..+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788899999999999998876 334445556666677887 89999999988777778888877555554
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----H
Q 043608 116 ----QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----I 187 (579)
Q Consensus 116 ----~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~ 187 (579)
++++|...|++..+.| +...+..|...|...+..+.+...++.+.+.....+......+...|...+. .
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7889999999999876 3347777777777666555444444444433222345566667777777774 4
Q ss_pred HHHHHHhcccCCCcHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIARKDVTSWGSMIAAFSKLG---YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
+.+..+++.....++.++..|...|...| +.++|++.|++..+.| +++.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----------------------------~~~a 213 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----------------------------TVTA 213 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------------------CSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----------------------------CHHH
Confidence 55666677767777779999999999999 9999999999999887 5666
Q ss_pred hhHHHHHHHHHcC----CChHHHHHHHHHHHhCCCCCChHHHHHHHHH-h--hcccchhhHHHHHHHHHHcCCCCCchhH
Q 043608 265 ASWNALIAGVASH----SNANEAMSLFSEMRDRELLPDGLTVHSLLCA-C--IGRLTLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 265 ~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
..+..+...|... ++.++|.+.|+... .| +...+..+-.. + ...++.++|...++...+.| ++...
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6666677777554 79999999999987 33 33444444443 2 45889999999999999887 66677
Q ss_pred HHHHHHHHhcC-----ChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 338 NAILTMYAKCS-----VLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 338 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
..+...|. .| ++++|.+.|+..- +-+...+..+...|.. ..++++|..+|++..+.|. ......+.
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 77777776 45 8999999999887 6577778888777766 3488999999999888764 23344444
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCC
Q 043608 409 GACAK----MASLEMVTQLHCYITKTGL 432 (579)
Q Consensus 409 ~~~~~----~~~~~~a~~~~~~~~~~~~ 432 (579)
..|.. ..+..+|...++...+.|.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44443 4577888888887777663
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-13 Score=134.67 Aligned_cols=364 Identities=9% Similarity=-0.017 Sum_probs=218.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHhcccC------------CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH
Q 043608 172 IAQNALIAMYTKFDRILDARNVFSGIA------------RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF 239 (579)
Q Consensus 172 ~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 239 (579)
..|+.+...+...|++++|++.|++.. .....+|+.+...|...|++++|...+++..+.....++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~-- 129 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-- 129 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--
Confidence 344444444455555555544443321 113457788888888888888888888776543100000
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCChH-HHHHHHHH---hhccc
Q 043608 240 IFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS--HSNANEAMSLFSEMRDRELLPDGL-TVHSLLCA---CIGRL 313 (579)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~---~~~~~ 313 (579)
........++..+..++.. .+++++|.+.|++..+. .|+.. .+..+..+ +...+
T Consensus 130 ------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~ 189 (472)
T 4g1t_A 130 ------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWP 189 (472)
T ss_dssp ------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSC
T ss_pred ------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCch
Confidence 0001234455555544444 46799999999998875 45543 33333333 34567
Q ss_pred chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043608 314 TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK----CSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFR 387 (579)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 387 (579)
+.++|++.++...+... .+..++..+...+.. .++.++|.+.+++. ..+.+...+..+...|...|++++|..
T Consensus 190 ~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 190 PSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 78889999998888753 345555555544444 46788999999875 223366788899999999999999999
Q ss_pred HHHHHHHCCCCCcHhHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 388 LFSRMLASQIKPDHITFNDVMGACAK-------------------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 388 ~~~~m~~~~~~p~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
.+++..+.. +.+..++..+...+.. .+..+.|...++...+... .+...+..+...|..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHH
Confidence 999988763 2344555555444322 1235567777777776543 345667788889999
Q ss_pred cCCHHHHHHHHhhCC--CCChhh----HHHHHH-HHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 449 CGSLGSARKLFNFME--NPDVVS----WSSLIL-GYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~--~~~~~~----~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
.|++++|...|++.. .|+... +..+.. .+...|++++|+..+++..+. .|+..... +....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHH
Confidence 999999999998775 343322 222222 234678899999999998874 55543222 223444
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh----cCCCChhHh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM----ACDADIVVW 573 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 573 (579)
.+++++..+. -+.+..++..|..+|...|++++|.+.+++. +..|+..+|
T Consensus 416 ~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 416 QKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5566665543 3456778999999999999999999999988 345666655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=141.18 Aligned_cols=251 Identities=8% Similarity=-0.092 Sum_probs=127.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHh----hcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 276 SHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCAC----IGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
..++.++|++.+++..+. .|+ ...+..+...+ ...++.++|.+.++...+.. +.+..++..+...|...|++
T Consensus 187 ~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred CchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 345555666666555543 232 22222222222 23345566666666665554 23445556666666666666
Q ss_pred HHHHHHHHHc-CCCC-ChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 351 CNALLVFKEL-GKNA-DSVSWNSIIAACLQ-------------------HNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 351 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
++|...+++. ...| +..++..+..+|.. .+..+.|...+++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 6666666654 1112 33344444433321 123566777777766653 334556777788
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchh--HHHHHHH-HHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVF--VMNGLMD-IYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 484 (579)
.+...|++++|.+.|++..+....+... .+..+.. .+...|+.++|...|++..+ |+...... ..+
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~ 413 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKD 413 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHH
Confidence 8888888888888888887765443321 2222222 23467888888888887653 44322221 223
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 540 (579)
.+.+++++..+.+ +.+..+|..+...|...|++++|++.|++..+.....|+..+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 4455566665543 445778888999999999999999999988865344455443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-14 Score=134.71 Aligned_cols=173 Identities=12% Similarity=-0.036 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC-----ChHH
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAA-C--LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA-----SLEM 419 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~ 419 (579)
+++++|.+.|+... +-+...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 35555555555544 3344444444444 2 23455555666665555544 3333333333333 22 5555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHHHHHH
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEALKLF 490 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 490 (579)
|...|++.. .-++.....|...|.. ..+.++|...|+...+ .+......|...|.. .++.++|...|
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 555555444 2234444444444443 2255555555555443 233344444444442 23555666666
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 491 TRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 491 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+...+.|. ++.......+......++..+|..+.++..+
T Consensus 382 ~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66655542 2222222222223333455555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-13 Score=119.83 Aligned_cols=233 Identities=11% Similarity=-0.019 Sum_probs=177.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGAC 411 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~ 411 (579)
........+...|++++|+..|++. ...| +...+..+...+...|++++|...+++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566777788888888888775 2222 455788888888888999999999988887432222 22477788888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
...|++++|...+++..+... .+...+..+..+|...|++++|...+++..+ .+...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887653 3567888999999999999999999999885 345666667634445569999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCc------chhHHHHHHHHhcCChhHHHH
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTR------EHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 559 (579)
.++++.+.. +.+...+..+...+...|+ +++|...+++..+...-.|+. ..+..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999863 2346677788888888888 888999999988764334543 467788999999999999999
Q ss_pred HHHhh-cCCCCh
Q 043608 560 FINQM-ACDADI 570 (579)
Q Consensus 560 ~~~~~-~~~~~~ 570 (579)
.+++. ...|+.
T Consensus 243 ~~~~al~~~p~~ 254 (272)
T 3u4t_A 243 AWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCccH
Confidence 99988 445653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=118.63 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=126.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 44455555666666666666666666665542 23445555555666666666666666666665542 24455566666
Q ss_pred HHHHc-----------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 445 IYIKC-----------GSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 445 ~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
++... |++++|...+++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 888888888877763 4 45677788888889999999999999988876 67778888888
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
++...|++++|+..+++..+. -+.+...+..+..++.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998864 23345677888888999999999999888763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=121.42 Aligned_cols=215 Identities=10% Similarity=-0.043 Sum_probs=110.8
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC----CC----hhhHHH
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN----AD----SVSWNS 371 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~----~~----~~~~~~ 371 (579)
.+..+...+...|++++|...++.+.+.. .+..++..+..++...|++++|.+.++.. ... |+ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555666666666666665555 44555555555555555555555555543 000 01 234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
+...+...|++++|...|++.... .|+. ..+.+.|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~~ 120 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLRN 120 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHhH
Confidence 555555555555555555555443 2332 12333444
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
+++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455544444432 122344455555556666666666666655542 223445555666666666666666666665
Q ss_pred HHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 529 ENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 200 l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 200 IEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 543 1223445555566666666666666666555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=115.25 Aligned_cols=206 Identities=9% Similarity=-0.026 Sum_probs=144.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456666667777777777777777776652 33456666677777777777777777777776542 255667777777
Q ss_pred HHHcCCHHHHHHHHhhCCC----C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 446 YIKCGSLGSARKLFNFMEN----P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
|...|++++|.+.++++.+ | +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 7888888888888777654 2 34556677777888888888888888887753 2346677788888888888888
Q ss_pred HHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhh
Q 043608 521 GLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSL 576 (579)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 576 (579)
|...++++.+. .+.+...+..+...+.+.|++++|.++++++ ...|+...+..+
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88888887752 2334556777778888888888888888887 344554444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=116.54 Aligned_cols=224 Identities=9% Similarity=-0.040 Sum_probs=156.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC--C----chhH
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS--N----VPVC 337 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 337 (579)
...|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++.+.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788899999999999999999999877 788899999999999999999999999988764322 2 5788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
..+...+...|++++|...|+.. ...|+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999886 333342 34666788999999999988752 2234456666666777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+++|...++...+.... +...+.. +...|...|++++|...+++..+.
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~-------------------------------l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSN-------------------------------RAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHH-------------------------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHH-------------------------------HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777777776654321 3344444 444445555555555555555443
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. +.+...+..+..++...|++++|...+++..+
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 22344455555555555555555555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-12 Score=112.20 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=141.7
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+++...+..+...+.+.|++++|...|+.. ... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777777888888888888888775 322 356678888888888888888888888887763 33456777777
Q ss_pred HHHhcc-----------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 043608 409 GACAKM-----------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLIL 475 (579)
Q Consensus 409 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 475 (579)
..+... |++++|...+++..+.... +...+..+..++...|++++|...|++..+ .+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 788888 8999999999988876533 567788888889999999999998887653 66777888899
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+|...|++++|+..+++..+.. +.+...+..+...+...|++++|+..+++.-
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999998853 3356688888999999999999999888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=112.37 Aligned_cols=208 Identities=8% Similarity=-0.055 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455666666666777777777777666542 33455666666666777777777777776665542 245566667777
Q ss_pred HHHc-CCHHHHHHHHhhCCC----CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 446 YIKC-GSLGSARKLFNFMEN----PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 446 ~~~~-~~~~~A~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
+... |++++|...++++.+ |+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777776654 21 4566777777888888888888888887753 234667778888888888888
Q ss_pred HHHHHHHHHHHhhCCC-CCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 520 EGLHLYRIMENEYGII-PTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
+|...++++.+. . + .+...+..+...+...|+.++|..+++.+ ...|+......+++
T Consensus 165 ~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 165 DADYYFKKYQSR-V-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 888888888764 1 2 34556667777778888888888888887 35676655555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-11 Score=112.19 Aligned_cols=217 Identities=10% Similarity=-0.044 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 335 PVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
..+..+...+...|++++|...|+..-.+.+...+..+...+.. .+++++|...|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 34444555555555566665555554222244455555556666 666666666666666554 44555555555
Q ss_pred Hhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh--
Q 043608 411 CAK----MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ-- 479 (579)
Q Consensus 411 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~-- 479 (579)
+.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+ .+...+..+...|..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Confidence 555 666666666666666553 45556666666666 6666666666665543 344455556666665
Q ss_pred --cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh---
Q 043608 480 --FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR--- 550 (579)
Q Consensus 480 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 550 (579)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|..
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCC
Confidence 667777777777766653 34555566666666 67777777777766653 2 24455566666666
Q ss_pred -cCChhHHHHHHHhh
Q 043608 551 -AGCVHEAEDFINQM 564 (579)
Q Consensus 551 -~g~~~~A~~~~~~~ 564 (579)
.|++++|.+++++.
T Consensus 234 ~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 234 VTRNEKQAIENFKKG 248 (273)
T ss_dssp SSCCSTTHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 67777777777665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=124.11 Aligned_cols=220 Identities=10% Similarity=-0.037 Sum_probs=182.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCC--CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNI--RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.+...|++++|+..|+.+...... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 456779999999999999875221 1245678888899999999999999999999887 6678899999999999999
Q ss_pred hhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|++..+ .+...|..+...+.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998873 45778999999999999999999999999885 566655555556667779999999999888
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc-------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD-------VTSWGSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
..... ++...+ .++..+...++.++|...+++....+ ...+..+...+.+.|++++|.+.|++..+..
T Consensus 171 ~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 87643 333444 47778888899999999998877642 4678889999999999999999999998763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=115.93 Aligned_cols=216 Identities=8% Similarity=-0.069 Sum_probs=113.1
Q ss_pred HcCCChHHHHHHHHHHHhCCCC--C-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 043608 275 ASHSNANEAMSLFSEMRDRELL--P-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (579)
...|++++|+..++++.+.... | +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456778888888887765321 1 34455566666667777777777777776654 234556666666666666666
Q ss_pred HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 352 NALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 352 ~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
+|.+.|+.. . .+.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666654 1 1224555666666666666666666666666554 23333333333333444555666665555444
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 430 TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD-------VVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
... ++...+. ++..+...++.++|...++...+.+ ...|..+...|...|++++|...++++.+
T Consensus 173 ~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 321 1222222 3334444444444444444444211 23333344444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=110.72 Aligned_cols=193 Identities=9% Similarity=-0.056 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 337 CNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
+..+...+...|++++|.+.|++. ..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 344444455555555555555443 111244455556666666666666666666665542 22445555566666666
Q ss_pred CChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 415 ASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 415 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665522222 445566666677777777777777776552 34566777778888888888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 491 TRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 491 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8887753 345567777778888888888888888888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-11 Score=111.34 Aligned_cols=238 Identities=8% Similarity=-0.076 Sum_probs=149.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
.+......+...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~~~~~~A 56 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK----------------------------YNSPYIYNRRAVCYYELAKYDLA 56 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----------------------------CCCSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHHhhHHHH
Confidence 44556677788888888888888887764 34555778888888888999999
Q ss_pred HHHHHHHHhCCCCCC--hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-
Q 043608 284 MSLFSEMRDRELLPD--GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL- 360 (579)
Q Consensus 284 ~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 360 (579)
.+.+++....+..|+ ...+..+...+...|++++|...++...+... .+..++..+...+...|++++|.+.|++.
T Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 57 QKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 998888887432222 12366677777788888888888888777652 35567777777777788888888877775
Q ss_pred CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC---hHHHHHHHHHHHHcC-CCCc
Q 043608 361 GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS---LEMVTQLHCYITKTG-LAFD 435 (579)
Q Consensus 361 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~ 435 (579)
...| +...+..+...+...+++++|...|++..+.. +.+...+..+...+...++ +++|...+++..+.. -.|+
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 2222 34455555523444457777777777776652 2234455555555555555 555665555554321 1111
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.. -.. -...|..+...|...|++++|.+.+++..+.
T Consensus 215 ~~-~~~------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 215 KY-KDE------------------------LIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp GG-HHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-hHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 10 000 0124455566666667777777777776664
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-11 Score=108.69 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=122.7
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchh
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
+.+..++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...++...+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345666777777788888888888888877763 233444555555555 666666666666666554 4444
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 337 CNAILTMYAK----CSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 337 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+..+...|.. .+++++|++.|+..-...+...+..+...|.. .+++++|...|++..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------------- 143 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------------- 143 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------------
Confidence 4555555555 55555555555443111244444444444444 44555555555544443
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ---- 479 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 479 (579)
+ +...+..+...|.. .+++++|...+++..+ .+...+..+...|..
T Consensus 144 ----------------------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 144 ----------------------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp ----------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred ----------------------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 3 23334444444444 4555555555554432 234445555555555
Q ss_pred cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHh
Q 043608 480 FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 531 (579)
.+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 666666666666666543 14445555555555 66666666666666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-11 Score=106.20 Aligned_cols=204 Identities=9% Similarity=-0.041 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 334 VPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
...+..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|...++++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344555666666667777776666654 112245567777777777777777777777776653 33556677777777
Q ss_pred hcc-CChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHH
Q 043608 412 AKM-ASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 412 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 486 (579)
... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 777 88888888887777622222 356677777788888888888888877652 3466778888888889999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
...++++.+.....+...+..+...+...|+.+.|..+++.+.+. .|+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~ 218 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN---FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHH
Confidence 999998887532145667777777788889999999998888754 4554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-12 Score=113.99 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444444444555555555555544431 22344444444455555555555555555444321 23444455555555
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 448 KCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554431 234445555555556666666666666655532 22344555555566666666666666
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 525 YRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++++.+. .+.+...+..+..+|.+.|++++|...++++
T Consensus 182 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 182 FAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6665543 1223445555566666666666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=125.06 Aligned_cols=268 Identities=11% Similarity=0.013 Sum_probs=147.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDG-----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
+..+...+...|++++|...|++..+. .|+. ..+..+...+...|++++|...++...+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 344555666677777777777766654 2321 234444445555555555555555443320
Q ss_pred HHHHhcCChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCcHhHHHHHHHHHhccC
Q 043608 342 TMYAKCSVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QI-KPDHITFNDVMGACAKMA 415 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~ 415 (579)
+..+.. .....+..+...|...|++++|...+++..+. +- +....++..+...+...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 000101 12234445555555555655555555554332 10 111234445555555566
Q ss_pred C-----------------hHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC--
Q 043608 416 S-----------------LEMVTQLHCYITKT----GL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD-- 466 (579)
Q Consensus 416 ~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-- 466 (579)
+ +++|.+.+++..+. +. ......+..+...|...|++++|...+++..+ ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 66666655554321 11 11223555666667777777777777666552 12
Q ss_pred --hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-C----ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--
Q 043608 467 --VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-P----NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-- 537 (579)
Q Consensus 467 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 537 (579)
...+..+...|...|++++|...+++..+.... . ...++..+...+...|++++|...+++......-.++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 125666677777777777777777776543110 0 1346667777777778888887777776643111111
Q ss_pred --cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 --REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...+..+..+|.+.|++++|.+.+++.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 235666777777788888887777765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-10 Score=111.54 Aligned_cols=459 Identities=9% Similarity=0.008 Sum_probs=249.9
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC---hhhHHHhh
Q 043608 17 EALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS---LEDARMGF 93 (579)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 93 (579)
+.+..|+..... .+.|..+|..++..+.+.++++.+..+|+.++..- +.....|...+..-.+.|. ++.+.++|
T Consensus 50 d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455555543 34566777777777777777777777777777664 5566677777776666666 77777777
Q ss_pred cCCCC-----CCeeehhHHhhhhhcCCCh--------hhHHHHHHHHHH-CCC-CCCc-ccHHHHHHHhcC---------
Q 043608 94 DKMPQ-----RNVVSWTAMIAGCSQNYQE--------NDAIKLYIQMLQ-SGV-MPGQ-FTFGSIIKACSG--------- 148 (579)
Q Consensus 94 ~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~p~~-~~~~~li~~~~~--------- 148 (579)
++... |++..|...+....+.++. +...++|+.... .|. .|+. ..|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 76652 5555666655544333332 223355555443 243 3322 334333332211
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
.++.+.+..+|+..+......-..+|......-...+. ..+.++ +.- ...+++.|...+.++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHHHHH
Confidence 12334455555555432111111122111100000000 000000 000 011233344444443
Q ss_pred Hhc--CCCC--CCh-HhHHHHHHHHHHHHHHHhhcCCCCC------hhhHHHHHHHHHcCC-------ChHHHHHHHHHH
Q 043608 229 LHH--GAYQ--PNE-FIFGSVFSACSNFARILFNEIDSPD------LASWNALIAGVASHS-------NANEAMSLFSEM 290 (579)
Q Consensus 229 ~~~--~~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m 290 (579)
... ++.. |.. .+.. ....+.++ ...|...+..--..+ ..+.+..+|++.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~-------------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQAT-------------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCC-------------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhccccccccch-------------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 221 1100 000 0000 00000001 123444443322222 123455667777
Q ss_pred HhCCCCCChHHHHHHHHHhhcccchhhHH-HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCC-------
Q 043608 291 RDRELLPDGLTVHSLLCACIGRLTLYQGM-QVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGK------- 362 (579)
Q Consensus 291 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 362 (579)
... .+-....|.....-+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|+.+-.
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 654 2334556666666666778888886 8888888653 44566667777888888899999888887621
Q ss_pred -----CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc-cCChHHHHHHH
Q 043608 363 -----NAD------------SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-MASLEMVTQLH 424 (579)
Q Consensus 363 -----~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~ 424 (579)
.|+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 132 235777777777788889999999988776111122233222222222 34588999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P----DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
+...+. .+.++..+...++.....|+.+.|..+|+.... | ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888865 344566677788888888899999999998774 3 2356777777777889999999999998886
Q ss_pred CCChhHHHHHHHHhhc
Q 043608 499 SPNLVTLVGVLTACSH 514 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~ 514 (579)
.|+......++.-|.-
T Consensus 571 ~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 571 FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp STTCCHHHHHHHHTCB
T ss_pred CCCCcHHHHHHHHhcC
Confidence 4555566666666544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=124.57 Aligned_cols=293 Identities=10% Similarity=0.021 Sum_probs=218.9
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHhhcccchhhHHHHHHHHHHc----CCC
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-----GLTVHSLLCACIGRLTLYQGMQVHSYIIKM----GFD 331 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 331 (579)
+.....+......+...|++++|...|++..+. .|+ ...+..+...+...|+++.|...++...+. +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 455666777888899999999999999999876 333 246777778889999999999999987654 211
Q ss_pred C-CchhHHHHHHHHHhcCChHHHHHHHHHc----CCCCC----hhhHHHHHHHHHhcCC--------------------H
Q 043608 332 S-NVPVCNAILTMYAKCSVLCNALLVFKEL----GKNAD----SVSWNSIIAACLQHNQ--------------------A 382 (579)
Q Consensus 332 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~--------------------~ 382 (579)
| ...++..+...+...|++++|...+++. +..++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 2456777888999999999999988775 11112 3478888888999999 9
Q ss_pred HHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHHcCCH
Q 043608 383 EELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 383 ~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 452 (579)
++|...+++.... +..|. ..++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998876542 21222 346777888899999999999999987743111 11 34778889999999999
Q ss_pred HHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC----CCC-hhHHHHHHHHhhccCch
Q 043608 453 GSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV----SPN-LVTLVGVLTACSHVGLV 518 (579)
Q Consensus 453 ~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~g~~ 518 (579)
++|...+++..+ ++ ..++..+...|...|++++|...+++..+... .+. ..++..+...+...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 999999988763 22 45677888999999999999999998875311 111 45788889999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC-CcchhHHHHHHHHhcCChh
Q 043608 519 EEGLHLYRIMENEY---GIIP-TREHCSCVVDLLARAGCVH 555 (579)
Q Consensus 519 ~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~ 555 (579)
++|...+++..+.. +..+ ...++..+...+...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999999876532 1111 2346677888888888763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-12 Score=111.43 Aligned_cols=196 Identities=10% Similarity=0.035 Sum_probs=129.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
....+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3344555555666666666666666655 2 22245566677777777777777777777776653 3355666777777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777888888888777776542 3566677777788888888888888877652 45667778888888889999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 488 KLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 488 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9998888753 335668888888888999999999999988864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-12 Score=121.52 Aligned_cols=268 Identities=10% Similarity=-0.001 Sum_probs=205.0
Q ss_pred CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHc-------CCCC-C
Q 043608 297 PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN---VPVCNAILTMYAKCSVLCNALLVFKEL-------GKNA-D 365 (579)
Q Consensus 297 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~ 365 (579)
+....+......+...|++++|...++.+.+.+.... ..++..+...+...|++++|...++.. +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666788899999999999999998853321 356778889999999999999998764 2222 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-cHhHHHHHHHHHhccCC--------------------hHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQ----IKP-DHITFNDVMGACAKMAS--------------------LEMV 420 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~--------------------~~~a 420 (579)
...+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4568888899999999999999999876531 111 13467778888899999 9999
Q ss_pred HHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHH
Q 043608 421 TQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 421 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 486 (579)
...++...+. +.. ....++..+...|...|++++|...+++..+ ++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876632 211 1245678888999999999999999988763 22 23778888999999999999
Q ss_pred HHHHHHHHhCC----CCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHHHHHHHhcCChhHH
Q 043608 487 LKLFTRMRSLG----VSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 487 ~~~~~~m~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 557 (579)
...+++..+.. ..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987531 1111 457888899999999999999999998764221222 44778899999999999999
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=115.12 Aligned_cols=228 Identities=10% Similarity=0.038 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 335 PVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQ-AEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
..+..+...+.+.|++++|++.++.. ... -+...|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34555556666667777777777664 222 255667777777777775 777777777777653 23456677777777
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh-cCCcHHH-
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQ-FGCGDEA- 486 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~a- 486 (579)
...|++++|...++++.+.... +...|..+..++.+.|++++|...++++.+ .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 7777777777777777766532 566777777777777888888887777763 345677777777777 5554666
Q ss_pred ----HHHHHHHHhCCCCC-ChhHHHHHHHHhhccC--chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC-------
Q 043608 487 ----LKLFTRMRSLGVSP-NLVTLVGVLTACSHVG--LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG------- 552 (579)
Q Consensus 487 ----~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 552 (579)
+..+++.++. .| +...|..+...+...| ++++|.+.+.++ + .-+.+...+..++.+|.+.|
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 4777777764 34 4557777777777777 578888877776 2 33344556777788887764
Q ss_pred --ChhHHHHHHHhh--cCCCC
Q 043608 553 --CVHEAEDFINQM--ACDAD 569 (579)
Q Consensus 553 --~~~~A~~~~~~~--~~~~~ 569 (579)
.+++|.++++++ ...|+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 247888888887 44554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=118.86 Aligned_cols=269 Identities=10% Similarity=0.021 Sum_probs=162.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHH
Q 043608 266 SWNALIAGVASHSNANEAMSLFSEMRDRELLPDG-----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAI 340 (579)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (579)
.+......+...|++++|...|+++.+. .|+. ..+..+...+...|+++.|...++...+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------
Confidence 3444455666677777777777776654 2321 334444444555555555555554443220
Q ss_pred HHHHHhcCChHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HhHHHHHHHHHhcc
Q 043608 341 LTMYAKCSVLCNALLVFKELGKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD----HITFNDVMGACAKM 414 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~ 414 (579)
+..+..| ....+..+...+...|++++|...+++..+... .++ ..++..+...+...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 0001111 133455555566666666666666665443210 011 22455555666666
Q ss_pred CC--------------------hHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----
Q 043608 415 AS--------------------LEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----- 464 (579)
Q Consensus 415 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 464 (579)
|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 66 66666666654421 111 1234566677778888888888888777652
Q ss_pred CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 043608 465 PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-PN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII 535 (579)
Q Consensus 465 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 535 (579)
++ ...+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 236777788888899999999998887643111 11 4467788888999999999999998876542111
Q ss_pred CC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 536 PT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 536 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+ ..++..+..+|.+.|++++|...+++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 336778889999999999999999887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-09 Score=107.64 Aligned_cols=444 Identities=10% Similarity=-0.003 Sum_probs=259.2
Q ss_pred hhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCC---hhhHHHHH
Q 043608 51 LQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQ---ENDAIKLY 124 (579)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~ 124 (579)
..+....++..+..+ +.|...|..++..+.+.+.++.|..+|+++.. .+...|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 455566677777777 67999999999999989999999999988874 345567777877777888 99999999
Q ss_pred HHHHHCC-CCCCcccHHHHHHHhcCCCcc--------hhHHHHHHHHHH-hcc-CCC-hhHHHHHHHHHhc---------
Q 043608 125 IQMLQSG-VMPGQFTFGSIIKACSGLGSV--------CLGRQLHAHVIK-SEH-GSH-LIAQNALIAMYTK--------- 183 (579)
Q Consensus 125 ~~~~~~g-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 183 (579)
++..... ..|+...|..-+.-..+.++. +.+.++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998863 137776666655443333322 334466666554 344 333 3455555543322
Q ss_pred CCCHHHHHHHhcccCCC---c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcC
Q 043608 184 FDRILDARNVFSGIARK---D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEI 259 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 259 (579)
.++++.+..+|++...- + ...|......--.. +...+.+++.+.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~------------------------------- 254 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL------------------------------- 254 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH-------------------------------
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh-------------------------------
Confidence 22344455555544321 0 01111111000000 000011111110
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC--CC----C-----------C--C---h---HHHHHHHHHhhccc-
Q 043608 260 DSPDLASWNALIAGVASHSNANEAMSLFSEMRDR--EL----L-----------P--D---G---LTVHSLLCACIGRL- 313 (579)
Q Consensus 260 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~----~-----------p--~---~---~~~~~ll~~~~~~~- 313 (579)
..+++.|...+.++... ++ + | + . ..|...+.---..+
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 01122233333222110 11 0 1 0 0 11222221111111
Q ss_pred ------chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH-HHHHHc--CCCCChhhHHHHHHHHHhcCCHHH
Q 043608 314 ------TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL-LVFKEL--GKNADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 314 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 384 (579)
..+.+..+|+..+... +....+|-..+..+...|+.++|. ++|+.. ..+.+...|-..+...-+.|+++.
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 1233456677776653 446777888888888888888886 888775 223355566777777888889999
Q ss_pred HHHHHHHHHHCCC---------CCc------------HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 385 LFRLFSRMLASQI---------KPD------------HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 385 a~~~~~~m~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
|.++|+++..... .|+ ...|...+....+.|+.+.|..+|....+.........|....
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999988876410 131 2346666666677788888888888887651112233343333
Q ss_pred HHHHHc-CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCc
Q 043608 444 DIYIKC-GSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHVGL 517 (579)
Q Consensus 444 ~~~~~~-~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~ 517 (579)
..-.+. ++.+.|..+|+...+ .+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 333343 448888888887774 355566677777777888888888888888764322 23467777777778888
Q ss_pred hHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 518 VEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+.+..+.+++... .|+......+++-|
T Consensus 557 ~~~~~~v~~R~~~~---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK---FPEVNKLEEFTNKY 584 (679)
T ss_dssp SHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence 88888888888865 45555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-12 Score=121.86 Aligned_cols=269 Identities=12% Similarity=0.002 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHcCC
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL----ASWNALIAGVASHS 278 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 278 (579)
..+..+...+...|++++|.+.|++..+.+ +.+. ..|..+...+...|
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~lg~~~~~~g 100 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----------------------------TEDLRTLSAIYSQLGNAYFYLG 100 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------------------ccChhHHHHHHHHHHHHHHHCC
Confidence 345566778889999999999999998874 2232 46778888899999
Q ss_pred ChHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcC-----CCCCchhHHHHHHHHHhcC
Q 043608 279 NANEAMSLFSEMRDR----ELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG-----FDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 279 ~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 348 (579)
++++|...+++..+. +..| ....+..+...+...|++++|...++...+.. ......++..+...|...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 999999999887643 1112 23345555566667777777777766655431 0111224444445555555
Q ss_pred C-----------------hHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHH
Q 043608 349 V-----------------LCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFND 406 (579)
Q Consensus 349 ~-----------------~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ 406 (579)
+ +++|.+.++ +..+. +..+ ...++..
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~--------------------------------~al~~~~~~~~~~~~~~~~~~ 228 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQ--------------------------------ENLKLMRDLGDRGAQGRACGN 228 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHH--------------------------------HHHHHHHHcCCHHHHHHHHHH
Confidence 5 444444443 32211 1011 1223444
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----C----ChhhHHH
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLA-F----DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----P----DVVSWSS 472 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~ 472 (579)
+...+...|++++|...+++..+.... + ....+..+..+|...|++++|...+++..+ . ....+..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444555555555555444321100 0 112445555556666666666666555442 1 1345566
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCC----CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGV----SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|...|++++|...+++..+... .+ ...++..+...|...|++++|...+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 67777777777777777777654210 11 1336677777888888888888888887754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-10 Score=108.06 Aligned_cols=215 Identities=11% Similarity=0.071 Sum_probs=148.1
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCC-
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSN- 279 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 279 (579)
+...|..+...+...|++++|++.+++..+.. +.+...|+.+..++...|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----------------------------P~~~~a~~~~g~~l~~~g~d 147 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------------AANYTVWHFRRVLLKSLQKD 147 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------------ccCHHHHHHHHHHHHHcccC
Confidence 45678888888999999999999999998875 5677888999999999996
Q ss_pred hHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 280 ANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
+++|+..|++.... .| +...|..+..++...|++++|+..++.+++.. +.+...|..+..++.+.|++++|+..|+
T Consensus 148 ~~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 148 LHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999998875 34 45566777777777888888888888888775 3366677777777777777777777777
Q ss_pred Hc-C-CCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCcHhHHHHHHHHHhccC--ChHHHHHHHHHHH
Q 043608 359 EL-G-KNADSVSWNSIIAACLQ-HNQAEEL-----FRLFSRMLASQIKPDHITFNDVMGACAKMA--SLEMVTQLHCYIT 428 (579)
Q Consensus 359 ~~-~-~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 428 (579)
++ . .+-+...|+.+..++.. .|..++| +..|++..... +-+...|..+...+...| ++++|.+.+..+
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~- 302 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL- 302 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence 65 1 12255667777777777 4444555 36666665542 223445555555566555 466666666555
Q ss_pred HcCCCCchhHHHHHHHHHHHc
Q 043608 429 KTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~ 449 (579)
+. .+.+...+..+..+|.+.
T Consensus 303 ~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 303 QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TT-TCCCHHHHHHHHHHHHHH
T ss_pred cc-CCCCHHHHHHHHHHHHHH
Confidence 21 122344555555555554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=114.28 Aligned_cols=275 Identities=11% Similarity=0.013 Sum_probs=162.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHcCCC
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPD----LASWNALIAGVASHSN 279 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~ 279 (579)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------------TEDLKTLSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHHHHHcCC
Confidence 34455677888999999999999998874 222 3567788889999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC-CC----chhHHHHHHHHHhcCC
Q 043608 280 ANEAMSLFSEMRDR----ELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD-SN----VPVCNAILTMYAKCSV 349 (579)
Q Consensus 280 ~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 349 (579)
+++|.+.+++.... +..| ....+..+...+...|++++|...++...+.... ++ ..++..+...+...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 99999999886542 1111 1334455555566666666666666655443111 01 1133344444444444
Q ss_pred -------------hHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHH
Q 043608 350 -------------LCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGAC 411 (579)
Q Consensus 350 -------------~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~ 411 (579)
.+++.+. +++|...+++.... +..| ....+..+...+
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~-------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 193 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNA-------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193 (338)
T ss_dssp TSSSSSCC----CCHHHHHH-------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHH-------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0000000 44444444433221 1111 123444555555
Q ss_pred hccCChHHHHHHHHHHHHcC----C-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTG----L-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGY 477 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~ 477 (579)
...|++++|...+++..+.. . ......+..+...+...|++++|...+++..+ ++ ...+..+...|
T Consensus 194 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (338)
T 3ro2_A 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 56666666666665554221 0 01123556666677777777777777766542 11 34566677788
Q ss_pred HhcCCcHHHHHHHHHHHhCC----CCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLG----VSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...|++++|...+++..+.. -.+ ...++..+...+...|++++|...+++..+.
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888888888888776431 111 1346777888888899999999998888753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-11 Score=112.39 Aligned_cols=233 Identities=9% Similarity=-0.044 Sum_probs=125.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL-LPD----GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
....+...|++++|...+++....-. .++ ..++..+...+...|+++.|...+....+.....+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 45667788999999999988875411 122 2344555555566666666666665554431110000
Q ss_pred HhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCChHH
Q 043608 345 AKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~ 419 (579)
.+....+++.+...|...|++++|...+++..+. +..+ ...++..+...+...|++++
T Consensus 180 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 180 -----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 0001223444455555555555555555544322 1111 11244445555555566666
Q ss_pred HHHHHHHHHHc----CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh---hhHHHHHHHHHhcCC---c
Q 043608 420 VTQLHCYITKT----GL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDV---VSWSSLILGYAQFGC---G 483 (579)
Q Consensus 420 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~ 483 (579)
|...+++..+. +. +....++..+..+|.+.|++++|...+++..+ ++. ..+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 65555555431 22 22344555566666666666666666655542 121 123455666667777 5
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++|+.++++. +..|+ ...+..+...|...|++++|...+++..+.
T Consensus 323 ~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666554 22333 335667777788888888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-11 Score=113.87 Aligned_cols=222 Identities=7% Similarity=-0.127 Sum_probs=163.7
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-cHhHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-GK---NA----DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ--I---KP-DHITFN 405 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~p-~~~~~~ 405 (579)
....+...|++++|...|+.. .. .+ ...++..+...+...|++++|...+++..+.. . .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777664 11 12 23467888888889999999999888876531 1 11 235778
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLA-F----DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWS 471 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~ 471 (579)
.+...+...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988743211 1 124788899999999999999999988764 33 34577
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCC---CC-ChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCcchhHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGV---SP-NLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTREHCSCV 544 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 544 (579)
.+...|.+.|++++|...+++..+... .| ....+..+...+...|+ +++|..++++.. ..+.....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 888999999999999999999875311 12 12346778888999999 777777777652 223334577889
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
...|...|++++|...+++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999887
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=98.46 Aligned_cols=169 Identities=8% Similarity=0.000 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
++..|..+...+...|++++|.+.|++..+.. +-+...+..+...+...|++++|...+........
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------------ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------------ 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------------
Confidence 34455566666666666666666666655542 22344444555555555555555555555444332
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 445 IYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
.+...+..+...+...++++.|...+++..+.. +.+...+..+...+...|++++|++.
T Consensus 71 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (184)
T 3vtx_A 71 --------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEA 129 (184)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHH
Confidence 223334444444555555555555555555431 22344555555555555666666666
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 525 YRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
|++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 130 ~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 130 YEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5555543 1223344555555566666666666665554 33444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-10 Score=103.82 Aligned_cols=212 Identities=10% Similarity=0.010 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHHHHh-------cCCh-------HHHHHHHHHc-C-CCC-ChhhHHHHHHHHHh
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTMYAK-------CSVL-------CNALLVFKEL-G-KNA-DSVSWNSIIAACLQ 378 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~-~-~~~-~~~~~~~l~~~~~~ 378 (579)
+.|..+|+.+++.. +.++.+|..++..+.. .|++ ++|..+|++. . ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887764 4466777777776653 4775 7888888875 3 344 34578888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcH-h-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-HcCCHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDH-I-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI-KCGSLGSA 455 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 455 (579)
.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888874 4442 2 677777778888888888888888876543 23444443333322 25888888
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC-CCCC--hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 456 RKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG-VSPN--LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 456 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
..+|+...+ .+...|..++..+.+.|++++|..+|++..+.. ++|+ ...|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887763 356677777788888888888888888888753 3443 4467777777778888888888888887
Q ss_pred Hh
Q 043608 530 NE 531 (579)
Q Consensus 530 ~~ 531 (579)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-10 Score=93.56 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=114.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
+..+|..+...|.+.|++++|++.|++. . .+-+..++..+...+.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 6778999999999999999999999986 2 22267789999999999999999999999988763 3345666667777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
+...++++.+...+....+... .+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888888776542 2445555555666666666666655555442 23344555555555555555555
Q ss_pred HHHHHHHh
Q 043608 488 KLFTRMRS 495 (579)
Q Consensus 488 ~~~~~m~~ 495 (579)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=113.10 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=120.0
Q ss_pred CchhHHHHHHHHHhcCCh-HHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVL-CNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
+...+..+...+...|++ ++|++.|++. . .+.+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 444555555555556666 6666655554 1 1114556677777777777777777777777665 355566666667
Q ss_pred HHhcc---------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc--------CCHHHHHHHHhhCCC--C----C
Q 043608 410 ACAKM---------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC--------GSLGSARKLFNFMEN--P----D 466 (579)
Q Consensus 410 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~----~ 466 (579)
.+... |++++|.+.+++..+... .+...+..+..+|... |++++|...|++..+ | +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 77776 777777777777766542 2456666666666666 667777777666652 3 4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566667777777777777777777776642 2234456666666777777777665443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-11 Score=114.95 Aligned_cols=207 Identities=12% Similarity=0.010 Sum_probs=175.0
Q ss_pred hHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 350 LCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQA-EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 350 ~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++++...+++. ... .+...+..+...+...|++ ++|...|++..+.. +.+...+..+...+...|++++|.+.+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666654 222 3677888999999999999 99999999998863 33577899999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHHc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc--------CCcHHH
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKC---------GSLGSARKLFNFMEN---PDVVSWSSLILGYAQF--------GCGDEA 486 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~a 486 (579)
..+.. |+...+..+..+|... |++++|...+++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99765 5578889999999999 999999999998873 4577889999999988 999999
Q ss_pred HHHHHHHHhCCCCC----ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHH
Q 043608 487 LKLFTRMRSLGVSP----NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 487 ~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+..|++..+. .| +...|..+..+|...|++++|...|++..+. .| +...+..+..++...|++++|.+.+
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999985 45 6778999999999999999999999999865 34 4457888899999999999999877
Q ss_pred Hhh
Q 043608 562 NQM 564 (579)
Q Consensus 562 ~~~ 564 (579)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-09 Score=95.56 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc-------CCCh-------HHHH
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS-------HSNA-------NEAM 284 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~ 284 (579)
++|...|++..... +.+...|..++..+.. .|++ ++|.
T Consensus 33 ~~a~~~~~~al~~~----------------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 67778888887653 4567777777766653 4664 6677
Q ss_pred HHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC
Q 043608 285 SLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN 363 (579)
Q Consensus 285 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (579)
.+|++.... +.|+ ...+..+...+...|++++|..+|+.+++. .
T Consensus 85 ~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------------------~ 129 (308)
T 2ond_A 85 NIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------------------------E 129 (308)
T ss_dssp HHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------------------------S
T ss_pred HHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------------------c
Confidence 777666652 1332 223444444444444555555555444442 2
Q ss_pred CC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 364 AD-SV-SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC-AKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 364 ~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..+|+...+... .++..+.
T Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 207 (308)
T 2ond_A 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 207 (308)
T ss_dssp SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 22 21 45555555555555555555555555542 12222222222211 124566666666666554432 2455566
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC-----C--ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN-----P--DVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.++..+.+.|+.++|..+|++... | ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543 1 2345666666666777777777777777664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-11 Score=108.62 Aligned_cols=230 Identities=14% Similarity=0.056 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHcC---------CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKELG---------KN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS------Q 396 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 396 (579)
...++..+...+...|++++|...+++.- .. .....+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567778888889999999999888761 12 23456788888889999999999999988764 2
Q ss_pred CCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHc------CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----
Q 043608 397 IKP-DHITFNDVMGACAKMASLEMVTQLHCYITKT------GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---- 464 (579)
Q Consensus 397 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 464 (579)
..| ...++..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3556777888888999999999999887754 222 2345677788888899999999888887652
Q ss_pred ---C-C---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCChh-------HHHHHHHHhhccCchHHHHH
Q 043608 465 ---P-D---VVSWSSLILGYAQFGCGDEALKLFTRMRSL-------GVSPNLV-------TLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 465 ---~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~a~~ 523 (579)
+ + ...+..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 2 345677788888999999999999888753 1122211 22222233344555666666
Q ss_pred HHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 524 LYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.++..... .+....++..+..+|.+.|++++|.+++++.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666532 2334567888999999999999999999886
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-09 Score=97.69 Aligned_cols=263 Identities=8% Similarity=-0.082 Sum_probs=188.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChH----HHHHHHHHhhcccchhhHHHHHHHHHHcCCCC-Cc----hhHHH
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGL----TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS-NV----PVCNA 339 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 339 (579)
.....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...++...+..... +. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34456678999999999999987754222222 34455567778899999999999887642211 11 23556
Q ss_pred HHHHHHhcCChHHHHHHHHHc-------CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--cHhHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-------GKN--A-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK--P--DHITFN 405 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~ 405 (579)
+...+...|++++|...+++. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999998765 221 2 2345667888899999999999999998764321 1 234567
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHHcCCHHHHHHHHhhCCCCCh-------hhHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDV-FVMN-----GLMDIYIKCGSLGSARKLFNFMENPDV-------VSWSS 472 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 472 (579)
.+...+...|++++|...++........++. ..+. ..+..+...|++++|...++....++. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7778889999999999999988754222211 1111 233457799999999999999875322 24567
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhC----CCCCCh-hHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSL----GVSPNL-VTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778899999999999999987643 222222 26667778889999999999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-11 Score=108.90 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDR-------ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 456777778888888888888888887652 112223344455555556666666666665554431
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHhHHHH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKEL--GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS------QIKP-DHITFND 406 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ 406 (579)
+.. +.. .....+..+...+...|++++|...+++..+. +..| ....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000 001 12233444555555555555555555554432 1112 2234445
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----------CC--
Q 043608 407 VMGACAKMASLEMVTQLHCYITKT------GLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----------PD-- 466 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~-- 466 (579)
+...+...|++++|.+.++++.+. +..| ...++..+..+|...|++++|...++++.+ +.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555666666666666555532 1111 233455566666666666666666655542 11
Q ss_pred -----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 467 -----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 467 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+..+...+...+.+.++...+++..... +.+..++..+..+|...|++++|...+++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445566667777777766531 223557888888899999999999998887753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-10 Score=105.22 Aligned_cols=300 Identities=10% Similarity=-0.024 Sum_probs=203.0
Q ss_pred CChhhHHHHHHHH--HcCCChHHHHHHHHHHHhC--CCCCC--hHHHHHHHHH--hhcccchhhHH---------HHHHH
Q 043608 262 PDLASWNALIAGV--ASHSNANEAMSLFSEMRDR--ELLPD--GLTVHSLLCA--CIGRLTLYQGM---------QVHSY 324 (579)
Q Consensus 262 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~--~~~~~~~~~a~---------~~~~~ 324 (579)
|+...-+.+-..| ...+++++|..+++++... .+..| ...|..++.. ....+...... ..++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444444455555 7899999999999987653 22223 3333443332 11122333333 56665
Q ss_pred HHHcCCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHc----CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 325 IIKMGFDSNV----PVCNAILTMYAKCSVLCNALLVFKEL----GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 325 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
+.....+.+. ..+......+...|++++|...|+.. ...++ ..++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 11223345567899999999999876 11122 346888899999999999999999987
Q ss_pred HHCC----C-CC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 393 LASQ----I-KP-DHITFNDVMGACAKMASLEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 393 ~~~~----~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.+.. . .+ ...++..+...+...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6531 1 11 2456778888999999999999999887743 211 1245678889999999999999999988
Q ss_pred CCC-----CC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC---CC-hhHHHHHHHHhhccCc---hHHHHHHHH
Q 043608 462 MEN-----PD---VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS---PN-LVTLVGVLTACSHVGL---VEEGLHLYR 526 (579)
Q Consensus 462 ~~~-----~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~-~~~~~~l~~~~~~~g~---~~~a~~~~~ 526 (579)
..+ .+ ..++..+...|.+.|++++|...+++..+.... |. ...+..+...+...|+ +.+|..+++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 764 22 456777888999999999999999998874222 22 3356666677778888 777777777
Q ss_pred HHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 527 IMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+.. ..+.....+..+...|...|++++|...+++.
T Consensus 328 ~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 328 KKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 532 22223446778999999999999999999887
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-09 Score=99.57 Aligned_cols=258 Identities=10% Similarity=0.040 Sum_probs=186.3
Q ss_pred HHhhcccchhhHHHHHHHHHHcCCCCCch----hHHHHHHHHHhcCChHHHHHHHHHc----CCCCCh----hhHHHHHH
Q 043608 307 CACIGRLTLYQGMQVHSYIIKMGFDSNVP----VCNAILTMYAKCSVLCNALLVFKEL----GKNADS----VSWNSIIA 374 (579)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~----~~~~~l~~ 374 (579)
..+...|+++.|...++...+.....+.. ++..+...+...|++++|...+++. ...++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34567899999999999988865333322 4566677888899999999998875 111122 23567778
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--Cc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----chhHHHHHH
Q 043608 375 ACLQHNQAEELFRLFSRMLAS----QIK--PD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAF----DVFVMNGLM 443 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 443 (579)
.+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++..+..... ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 889999999999999987653 222 32 3455667788899999999999999988543321 235677788
Q ss_pred HHHHHcCCHHHHHHHHhhCC----CCCh-hhHHH-----HHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHH
Q 043608 444 DIYIKCGSLGSARKLFNFME----NPDV-VSWSS-----LILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLT 510 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 510 (579)
..+...|++++|...+++.. .++. ..+.. .+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 88999999999999998764 2221 22222 23447799999999999999876432211 224667788
Q ss_pred HhhccCchHHHHHHHHHHHHhh---CCCCCc-chhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 511 ACSHVGLVEEGLHLYRIMENEY---GIIPTR-EHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+...|++++|...+++..... +..++. ..+..+..++...|+.++|...+++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8999999999999999886531 211222 25667788899999999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-09 Score=101.52 Aligned_cols=230 Identities=11% Similarity=-0.022 Sum_probs=119.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL-LPD----GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
....+...|++++|...|++...... .++ ...+..+...+...|+++.|...++...+....
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~------------- 173 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN------------- 173 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------------
Confidence 44556778889999988888765411 122 223444445555555665555555554432100
Q ss_pred HhcCChHHHHHHHHHcCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCCh
Q 043608 345 AKCSVLCNALLVFKELGK-NA-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASL 417 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 417 (579)
.+. .+ ...+++.+...|...|++++|...+++..+. +..+ ...++..+...+...|++
T Consensus 174 ---------------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 174 ---------------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp ---------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ---------------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 000 00 1223445555555555555555555544331 1111 123444555555566666
Q ss_pred HHHHHHHHHHHH----cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC---hhhHHHHHHHHHhcCC---
Q 043608 418 EMVTQLHCYITK----TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD---VVSWSSLILGYAQFGC--- 482 (579)
Q Consensus 418 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~--- 482 (579)
++|...+++..+ .+.+....++..+..+|.+.|++++|...+++..+ ++ ...+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 666666655543 12122245555666666666666666666655431 11 1223344444555566
Q ss_pred cHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++|+..+++ .+..|+ ...+..+...|...|++++|...+++...
T Consensus 319 ~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666655 222232 33556677777788888888887777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-10 Score=94.95 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---------- 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVK---------- 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH----------
Confidence 45556666666677777777766655432 2344455555555666666666666666555442 11333
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 448 KCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 78 ---------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 78 ---------------------VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ---------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34444455555555555555555555432 22344555555555555666666666555
Q ss_pred HHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 528 MENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+.+. .+.+...+..+..++...|++++|.+.+++.
T Consensus 136 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 136 ALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 1223345555555566666666666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=90.49 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHcC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 334 VPVCNAILTMYAKCSVLCNALLVFKELG-K-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
...+..+...+...|++++|.+.++.+- . +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456777888999999999999999872 2 2366788899999999999999999999998763 44567777888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFT 491 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 491 (579)
...|++++|.+.++.+.+... .+.. .+..+...+...|++++|.+.++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~-------------------------------~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFN-------------------------------VRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999888888776532 2333 34444555556666666666666
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666542 234556666667777777777777777766643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-09 Score=91.46 Aligned_cols=239 Identities=9% Similarity=-0.042 Sum_probs=123.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
++-..-.|++..++.-...+.. ..+ ......+.+++...|+++... ...|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 3445557888888873332211 112 223333446666666655321 112222233333322 2222
Q ss_pred HHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHhHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 351 CNALLVFKELGK--NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPDHITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 351 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
|++.|++.-. .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5566665421 23444555666667777777777777777655543 124455566667777777777777777777
Q ss_pred HHcCCCC-----chhHHHHHHHHH--HHcC--CHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 428 TKTGLAF-----DVFVMNGLMDIY--IKCG--SLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 428 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.+.. | +..+...|..++ ...| +..+|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6542 3 233334444442 2222 66666666666653 33223333444666666666666666655432
Q ss_pred C-----C---CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 497 G-----V---SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 497 ~-----~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. . .| |+.++..+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 0 12 34455444444444555 56666666664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-09 Score=92.74 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=149.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 364 ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888889999999999999999999988754477777777889999999999999999999976533 677888999
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CC-h-------hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHH
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PD-V-------VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLT 510 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 510 (579)
.+|...|++++|...+++..+ |+ . ..|..+...+...|++++|++.+++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999998873 43 3 45777788888999999999999999885 565 456777777
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhH
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVV 572 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 572 (579)
++...|+ .+++++... + ..+...+... .....|.+++|...+++. ...|+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~-~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPL-A-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHGGG-T-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-----HHHHHHHhc-c-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 7765443 345555432 1 2223333332 234567789999999888 44565433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-08 Score=87.47 Aligned_cols=195 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 332 SNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
.++..+......+...|++++|...|+.. ..+++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999986 332577777779999999999999999999998863 33567788889
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC---hhhHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDV-------FVMNGLMDIYIKCGSLGSARKLFNFMEN--PD---VVSWSSLILG 476 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~ 476 (579)
..+...|++++|...+++..+.... +. ..+..+...+...|++++|...|+++.+ |+ ...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999976533 33 4577888889999999999999999885 43 3556667777
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l---~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL---SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc---CCCCH
Confidence 76544 34456665543 23344444333 34457799999999999864 55543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-09 Score=106.24 Aligned_cols=161 Identities=11% Similarity=0.001 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+|+.+...+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.+++..+.... +...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777777777777777776652 223556667777777777777777777777765422 46677777777
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 521 (579)
|.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 7777788877777777652 34567777888888888888888888888774 454 55777788888888888888
Q ss_pred HHHHHHHHH
Q 043608 522 LHLYRIMEN 530 (579)
Q Consensus 522 ~~~~~~~~~ 530 (579)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=107.19 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=141.0
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 043608 400 DHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILG 476 (579)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 476 (579)
+...++.+...+...|++++|.+.|++..+.... +...+..+..+|.+.|++++|...|++..+ | +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3568889999999999999999999999987533 578899999999999999999999998873 4 56789999999
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCCh
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCV 554 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 554 (579)
|...|++++|++.|++..+. .| +...|..+..++...|++++|+..|++..+. .|+ ...+..+..+|...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999985 45 4678999999999999999999999999864 454 56888999999999999
Q ss_pred hHHHHHHHhh
Q 043608 555 HEAEDFINQM 564 (579)
Q Consensus 555 ~~A~~~~~~~ 564 (579)
++|.+.+++.
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-09 Score=93.89 Aligned_cols=201 Identities=7% Similarity=-0.072 Sum_probs=141.0
Q ss_pred ChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHH
Q 043608 349 VLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
++++|...|+.. ...|...|++++|...|++..+. |.+++ ..++..+...+...|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777666554 44566788888888888776543 22222 45777788888888888888888
Q ss_pred HHHHHHcCC---CC--chhHHHHHHHHHHHc-CCHHHHHHHHhhCCC--C---C----hhhHHHHHHHHHhcCCcHHHHH
Q 043608 424 HCYITKTGL---AF--DVFVMNGLMDIYIKC-GSLGSARKLFNFMEN--P---D----VVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 424 ~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
+++..+... .+ ...+++.+..+|... |++++|...|++..+ | + ..++..+...+.+.|++++|+.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 887764321 11 135677888889886 999999999988763 1 1 3457788899999999999999
Q ss_pred HHHHHHhCCCCCChh------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc------hhHHHHHHHH--hcCCh
Q 043608 489 LFTRMRSLGVSPNLV------TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE------HCSCVVDLLA--RAGCV 554 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~ 554 (579)
.+++..+........ .|..+..++...|++++|...+++... +.|+.. .+..++..+. ..+++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999864332221 567777888899999999999998873 344422 2344556664 45678
Q ss_pred hHHHHHHHhh
Q 043608 555 HEAEDFINQM 564 (579)
Q Consensus 555 ~~A~~~~~~~ 564 (579)
++|+..++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8999998887
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=96.82 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=147.6
Q ss_pred hcCChHHHHHHHHHc--------CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHhHHHHHH
Q 043608 346 KCSVLCNALLVFKEL--------GKN-A-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS------QIKP-DHITFNDVM 408 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~--------~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~ 408 (579)
..|++++|+..+++. +.. | ...++..+...+...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666543 111 2 3557888999999999999999999998764 2223 355788888
Q ss_pred HHHhccCChHHHHHHHHHHHHc------C-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------C-C---hhhH
Q 043608 409 GACAKMASLEMVTQLHCYITKT------G-LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-------P-D---VVSW 470 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~---~~~~ 470 (579)
..+...|++++|...+.+..+. . .+.....+..+...|...|++++|...++++.+ + + ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 123466788888999999999999999887753 1 2 3567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCChh-HHHHHHHHhhccCchH------HHHHHHHHHHHhhCCCC
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSL-------GVSPNLV-TLVGVLTACSHVGLVE------EGLHLYRIMENEYGIIP 536 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~ 536 (579)
..+...|...|++++|...++++.+. ...+... .+..+.......+... .+...++.... ..+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 78888999999999999999998763 1223322 3333333333333222 22222221110 1111
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....+..+..+|...|++++|..++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2346788999999999999999999886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-07 Score=84.22 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=114.2
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 385 LFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 385 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+...|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..+++.+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666554 44555555667777778888888888877765543 2356667777788888888888888887776
Q ss_pred C--C-----ChhhHHHHHHH--HHhcC--CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 043608 464 N--P-----DVVSWSSLILG--YAQFG--CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY 532 (579)
Q Consensus 464 ~--~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 532 (579)
+ | +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 4 13444445444 33334 778888888887654 3543333344447778888888888887665431
Q ss_pred C--------CCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 533 G--------IIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 533 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
. -+.++.++..++......|+ +|.++++++ ...|+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 13345566555556666675 777777777 33444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.1e-09 Score=93.12 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
..++..+...|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-08 Score=79.28 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 34455555556666666666655442 344555566666666777777777777766643 23455666667777777
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++
T Consensus 83 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 7777777777777653 1223455666777777777777777777766
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-08 Score=86.37 Aligned_cols=184 Identities=10% Similarity=-0.037 Sum_probs=114.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc-HhHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD-HITFN 405 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 405 (579)
+...+-.+...+.+.|++++|...|+.+ ...|+ ...+..+..++.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455556666777777788887777775 22222 45666677777777777777777777776521 111 33455
Q ss_pred HHHHHHhc--------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 043608 406 DVMGACAK--------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGY 477 (579)
Q Consensus 406 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 477 (579)
.+..++.. .|++++|...++++.+.... +......+.......+.. ...+..+...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~~ 158 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL--------------ARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 55556666 77777777777777655322 222222211111000000 11145667888
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhcc----------CchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHV----------GLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 531 (579)
.+.|++++|+..|+++.+..... ....+..+..++... |++++|...++++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999998753211 234677777777766 8889999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=84.84 Aligned_cols=187 Identities=9% Similarity=-0.072 Sum_probs=119.4
Q ss_pred hhcccchhhHHHHHHHHHHc----CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHc-------CCCC-ChhhHHHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKM----GFDS-NVPVCNAILTMYAKCSVLCNALLVFKEL-------GKNA-DSVSWNSIIAA 375 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~ 375 (579)
+...|++++|...+....+. |.++ ...+++.+..+|.+.|++++|+..++.. +..+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666555443 2111 1346666777777777777777766654 1111 13467778888
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCC----CCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch------hHHHHHH
Q 043608 376 CLQH-NQAEELFRLFSRMLASQI----KPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV------FVMNGLM 443 (579)
Q Consensus 376 ~~~~-~~~~~a~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~ 443 (579)
|... |++++|...|++..+... .+. ..++..+...+...|++++|...+++..+....... ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 888888888888765311 111 346777888888889999999999888876543322 1567777
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CChh------hHHHHHHHHH--hcCCcHHHHHHHHHHHh
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PDVV------SWSSLILGYA--QFGCGDEALKLFTRMRS 495 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 495 (579)
.++...|++++|...+++..+ |+.. .+..++.++. ..+++++|+..|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888889999999999988874 3221 2334455554 34567888888766543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-06 Score=85.72 Aligned_cols=376 Identities=11% Similarity=0.005 Sum_probs=192.0
Q ss_pred ch-hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCC-hhhHHHH
Q 043608 48 LR-SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQ-ENDAIKL 123 (579)
Q Consensus 48 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~ 123 (579)
.| +++.|..+|+.+...- |. |+++.|..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777776543 22 788888888888764 777777777776655542 3556677
Q ss_pred HHHHHHC-CCC-CCcccHHHHHHHhcC----CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 124 YIQMLQS-GVM-PGQFTFGSIIKACSG----LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 124 ~~~~~~~-g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
|+..... |.. ++...|...+..+.. .++.+.+..+|+..+......-...|...... .+......+..+
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~---- 145 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKI---- 145 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHH----
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHH----
Confidence 7776653 322 244555555554432 24566677777777663111111111111110 000011111111
Q ss_pred CCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC
Q 043608 198 ARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH 277 (579)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (579)
+... .+.+..|..+++++... +. ..+...|...+..-...
T Consensus 146 -----------~~~~--~~~y~~ar~~y~~~~~~------------------------~~---~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 146 -----------VGDT--LPIFQSSFQRYQQIQPL------------------------IR---GWSVKNAARLIDLEMEN 185 (493)
T ss_dssp -----------HHHH--HHHHHHHHHHHHHHHHH------------------------HH---TCSHHHHHHHHHHHHTC
T ss_pred -----------HHHH--hHHHHHHHHHHHHHHHH------------------------Hh---hccHHHHHHHHHHHhcC
Confidence 1110 01223333333333211 00 11223343333332211
Q ss_pred C-------ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 278 S-------NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 278 ~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
+ ..+.+..+|+++.... +-+...+...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcch
Confidence 1 0234566777766542 334555655666666777888888888888777 333332221 2221111
Q ss_pred HHHH-HHHHHc--CC-------C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc-cCCh
Q 043608 351 CNAL-LVFKEL--GK-------N--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-MASL 417 (579)
Q Consensus 351 ~~a~-~~~~~~--~~-------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~ 417 (579)
++.. .+.+.. .. . .....|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCCh
Confidence 1111 111111 00 0 11234566666666677788888888887 32 11233333322211111 2368
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+.|..+|+...+.- +-++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++.+
T Consensus 337 ~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888877653 22344556667777778888888888888743 456677777666677888888777777663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-07 Score=84.67 Aligned_cols=162 Identities=9% Similarity=-0.029 Sum_probs=129.9
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHH-H
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSL-I 474 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l-~ 474 (579)
+.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 444556667777888889999999999988876533 567888899999999999999999999984 655433332 2
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhc
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARA 551 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 551 (579)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .|+ ...+..++..|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 33667888999999999998863 335778889999999999999999999999976 343 55788999999999
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9999999888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=4.4e-06 Score=81.40 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=125.4
Q ss_pred HHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 351 CNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 351 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+.+..+|++. ..+.+...|...+.-+.+.|+.++|..+|++.... |....+... +......++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhHH---HHHHH
Confidence 3455677665 23335677888888888899999999999999887 444333221 2111111111 22222
Q ss_pred HcC---------C---CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHH-hcCCcHHHHHHHHHH
Q 043608 429 KTG---------L---AFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD--VVSWSSLILGYA-QFGCGDEALKLFTRM 493 (579)
Q Consensus 429 ~~~---------~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~m 493 (579)
+.- . .....+|...+....+.++.+.|..+|+....|. ...|......-. ..++.+.|..+|+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 110 0 1123456666777777888999999999884343 222322121112 234799999999999
Q ss_pred HhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 494 RSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 494 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.. +-++..+...+....+.|+.+.|..+|+++. .....|...++.-...|+.+.+..++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8752 2234455666777778899999999999872 24456777777667789999999988777
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-08 Score=83.26 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+......+...|++++|...|++..+. .|+.. .+.. . .... . ..........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h---------------hhhhHHHHHHHHHH
Confidence 34444556677889999999999988775 44432 2322 0 0000 0 00011222335566
Q ss_pred HHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCc--hH
Q 043608 446 YIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGL--VE 519 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~--~~ 519 (579)
|.+.|++++|...|++..+ | +...|..+...+...|++++|+..|++..+. .| +...+..+..++...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666666666552 2 4455666666666666777777777666664 33 34456566555554443 22
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhh
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKS 575 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 575 (579)
.+...++... ...|....+..+..++...|++++|...+++. ...|+.....+
T Consensus 142 ~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3333333332 11121122333444555566667777766666 44566554444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=72.64 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 369 WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 369 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 4445555555566666666665555432 2233344444444444445555554444444332
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 449 CGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 66 ---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 66 ---------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp ---------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 1234455566667777777777777777777643 234556777777777888888888887777
Q ss_pred HHh
Q 043608 529 ENE 531 (579)
Q Consensus 529 ~~~ 531 (579)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-07 Score=78.95 Aligned_cols=119 Identities=12% Similarity=-0.061 Sum_probs=59.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGC 482 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 482 (579)
.+...+...|++++|...+++. +.|+...+..+..+|.+.|++++|...+++..+ .+...|..+...|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3344444555555555555443 233445555555555555555555555554431 233445555555555555
Q ss_pred cHHHHHHHHHHHhCCCCCCh----------------hHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNL----------------VTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+++|.+.+++..+.. +.+. ..+..+..++...|++++|...+++..
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555555555432 1111 344455555555555555555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=78.37 Aligned_cols=187 Identities=9% Similarity=-0.068 Sum_probs=103.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHcC
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPD---LASWNALIAGVASH 277 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 277 (579)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+..++.+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~a~~~lg~~~~~~ 65 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----------------------------RTHEWAADAQFYLARAYYQN 65 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----------------------------SCSTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------------CCCcchHHHHHHHHHHHHHh
Confidence 44555556666777777777777777776653 112 45566666777777
Q ss_pred CChHHHHHHHHHHHhCCC-CCC-hHHHHHHHHHhhc--------ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 278 SNANEAMSLFSEMRDREL-LPD-GLTVHSLLCACIG--------RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
|++++|...|+....... .|. ...+..+..++.. .|++++|...++.+.+.... +......+.......
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELR 144 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHH
Confidence 777777777777765421 111 2334444455555 67777777777776665322 222221111100000
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHhHHHHHHHHHhcc----------C
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKP--DHITFNDVMGACAKM----------A 415 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------~ 415 (579)
+. -...+..+...|.+.|++++|...|+++.+..... ....+..+..++... |
T Consensus 145 ~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 145 AK---------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp HH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HH---------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 00 01123455666777777777777777776642111 123455555555544 6
Q ss_pred ChHHHHHHHHHHHHcC
Q 043608 416 SLEMVTQLHCYITKTG 431 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (579)
++++|...++.+.+..
T Consensus 210 ~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 210 RYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHC
Confidence 6677777777776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-07 Score=77.30 Aligned_cols=158 Identities=14% Similarity=-0.011 Sum_probs=104.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA----SLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
++..+..+...|...+++++|..+|++..+.| +...+..+...+.. + ++++|.+.+++..+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56666666666777777777777777776654 34455555555655 5 6777777777776654 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHhhCCCC-C----hhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 441 GLMDIYIK----CGSLGSARKLFNFMENP-D----VVSWSSLILGYAQ----FGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 441 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.|...|.. .+++++|...|++..+. + +..+..|...|.. .+++++|+..|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666665 66777777777776642 2 4666777777776 66778888888887765 234445555
Q ss_pred HHHHhhcc-C-----chHHHHHHHHHHHHh
Q 043608 508 VLTACSHV-G-----LVEEGLHLYRIMENE 531 (579)
Q Consensus 508 l~~~~~~~-g-----~~~~a~~~~~~~~~~ 531 (579)
|...|... | ++++|..+|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66655432 2 777787777777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-07 Score=78.69 Aligned_cols=182 Identities=12% Similarity=0.000 Sum_probs=116.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK-P-DHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FVMN 440 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 440 (579)
+...+..+...+...|++++|...|+++.+.... | ....+..+..++...|++++|...++.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777888899999999999998875321 1 1346777788888999999999999998876543221 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh-HH--------------
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV-TL-------------- 505 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~-------------- 505 (579)
.+..++.+.+.. .+ ..|..+...+...|++++|...|+++.+. .|+.. ..
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHH
Confidence 444444432210 00 01112223333455666666666666654 23321 11
Q ss_pred ---HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc----chhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 506 ---VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR----EHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 506 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+...+.+.|++++|...|+++.+. .|+. ..+..+..+|.+.|+.++|.+.++++
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 24556778899999999999999875 3432 46778899999999999999999988
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-07 Score=77.57 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=106.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhcC
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILG-YAQFG 481 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~~~ 481 (579)
......+...|++++|...++...+.. +.+...+..+..++...|++++|...++.+.+ |+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 344455566677777777776655433 22556677777888888888888888888764 433322222211 22333
Q ss_pred CcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhcCChhHH
Q 043608 482 CGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 557 (579)
+..+|...+++..+. .| +...+..+..++...|++++|...|+++.+. .|+ ...+..+..++...|+.++|
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcH
Confidence 445578888888875 45 4678888888999999999999999988854 443 44778888999999999999
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
...+++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=95.91 Aligned_cols=181 Identities=12% Similarity=0.007 Sum_probs=100.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 377 LQHNQAEELFRLFSRML--------ASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
...|++++|.+.+++.. +. .+.+...+..+...+...|++++|...+++..+.+. .+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 45566666666666665 22 122334555555666666666666666666665432 245556666666666
Q ss_pred cCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHH
Q 043608 449 CGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 525 (579)
.|++++|...|++..+ | +...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666552 2 34555666666666666666 66666666542 223445666666666666666666666
Q ss_pred HHHHHhhCCCCC-cchhHHHHHHHHhcCC--------hhHHHHHHHhh
Q 043608 526 RIMENEYGIIPT-REHCSCVVDLLARAGC--------VHEAEDFINQM 564 (579)
Q Consensus 526 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 564 (579)
++..+ ..|+ ...+..+..++...|+ +++|.+.++++
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 66552 2343 3344455555544332 44555555444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-07 Score=79.38 Aligned_cols=158 Identities=7% Similarity=-0.035 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNS----------------IIAACLQHNQAEELFRLFSRMLASQI 397 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~ 397 (579)
.+......+...|++++|+..|+.. ...| +...|.. +..++.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3444556678899999999999986 3333 3344555 5666666666666666666666542
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC--HHHHHHHHhhCCCCChhh--HHHH
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS--LGSARKLFNFMENPDVVS--WSSL 473 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~--~~~l 473 (579)
+-+...+..+...+...|++++|...+++..+... .+...+..+..+|...|+ .+.+...++....|+... +...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 22445555666666666666666666666665442 244455555555543332 333444555544444322 2222
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh
Q 043608 474 ILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
..++...|++++|...|++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334445555555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=85.44 Aligned_cols=160 Identities=6% Similarity=-0.027 Sum_probs=80.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc-ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG-RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
.|++++|.+++++..+.. +. .+.+ .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665431 11 1222 35566665555443 345566677777766
Q ss_pred HHHHc-------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCc--HhHHHHHHHHHhccCChHHHHH
Q 043608 356 VFKEL-------GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ---IKPD--HITFNDVMGACAKMASLEMVTQ 422 (579)
Q Consensus 356 ~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 422 (579)
.|... +..+ -..+|+.+...|...|++++|...|++..+.- -.+. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66543 1111 12356666666666777777777766654321 0111 2344455555555 66666666
Q ss_pred HHHHHHHcCCCC-----chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 423 LHCYITKTGLAF-----DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 423 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
.+++..+..... ...++..+..+|.+.|++++|...|++..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666554321100 12334444455555555555555554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-08 Score=81.41 Aligned_cols=61 Identities=10% Similarity=-0.071 Sum_probs=44.4
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
.+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|+..+++..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 44555666777778888888887777665 55667777777777778888888888877764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.1e-08 Score=99.70 Aligned_cols=165 Identities=8% Similarity=-0.079 Sum_probs=97.3
Q ss_pred hhhhhhhhHHHHHH--------HhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCCh
Q 043608 49 RSLQLGRKVHDHIL--------LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQE 117 (579)
Q Consensus 49 ~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 117 (579)
|++++|.+.+++.. +.. +.+...+..+...+...|++++|++.|++..+ .+...|..+...+...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 45666666666655 332 34455556666666666666666666666552 2344566666666666666
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 118 NDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 118 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
++|.+.|++..+.. +-+...+..+..++...|++++ .+.|++..+... .+...+..+..++.+.|++++|.+.|++.
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666666666542 2234556666666666677777 777766666542 34556666777777777777777777776
Q ss_pred CCC---cHhhHHHHHHHHHhcCC
Q 043608 198 ARK---DVTSWGSMIAAFSKLGY 217 (579)
Q Consensus 198 ~~~---~~~~~~~l~~~~~~~~~ 217 (579)
.+. +..++..+..++...++
T Consensus 561 l~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 561 PPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CTTSTTHHHHHHHHHHHTC----
T ss_pred cccCcccHHHHHHHHHHHHccCC
Confidence 543 34455555556555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.5e-07 Score=76.60 Aligned_cols=180 Identities=9% Similarity=-0.027 Sum_probs=120.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh----H
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI----T 403 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 403 (579)
+...+..+...+.+.|++++|+..|+.+ ...|+ ...+..+..++.+.|++++|...|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566777889999999999999987 22222 3568888999999999999999999998863 3321 3
Q ss_pred HHHHHHHHhc------------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 043608 404 FNDVMGACAK------------------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP 465 (579)
Q Consensus 404 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 465 (579)
+..+..++.. .|++++|...++.+.+.... +..........-.-.+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~------------ 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA------------ 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH------------
Confidence 4444444433 45666677777666654321 1222211111000000000
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+...
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134567788999999999999999986 3442 46888899999999999999999988864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-07 Score=80.80 Aligned_cols=172 Identities=7% Similarity=0.006 Sum_probs=115.6
Q ss_pred HHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 190 ARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 190 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
..+.++.....+...+..+...+.+.|++++|.+.|++..+.. +.+...+..
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------P~~~~a~~~ 156 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------------NQNGEIGLL 156 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------TSCHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------CcchhHHHH
Confidence 3344444444455667777888889999999999999988774 456778888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHH-HHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL-CACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
+...+.+.|++++|...++..... .|+........ ..+...++.+.+...++...+.. +.+...+..+...+...|
T Consensus 157 la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 157 LAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVG 233 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcc
Confidence 889999999999999999888654 45543322222 23455666777777777777765 335566666667777777
Q ss_pred ChHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 349 VLCNALLVFKEL-GKNA---DSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
++++|...|+++ ...| +...+..++..+...|+.++|...|++.
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 777777776665 2222 2445666666666667666666666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-06 Score=72.23 Aligned_cols=162 Identities=9% Similarity=-0.035 Sum_probs=125.9
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhccc----chhhHHHHHHHHHHcCCCCCchhH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRL----TLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
.+..++..+...+...+++++|.+.|++..+.| +...+..+-..+.. + +.++|...++...+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456778888888888999999999999998875 45556666666666 6 8999999999998876 56677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHcCCCCC----hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 338 NAILTMYAK----CSVLCNALLVFKELGKNAD----SVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 338 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
..+...|.. .+++++|.+.|+..-...+ ..++..+...|.. .+++++|..+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 778888876 7899999999998744323 6788888888888 78899999999998886 22334555
Q ss_pred HHHHHHhcc------CChHHHHHHHHHHHHcCC
Q 043608 406 DVMGACAKM------ASLEMVTQLHCYITKTGL 432 (579)
Q Consensus 406 ~l~~~~~~~------~~~~~a~~~~~~~~~~~~ 432 (579)
.+...|... .+.++|...++...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 566665432 388999999998888774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.3e-07 Score=82.47 Aligned_cols=225 Identities=8% Similarity=-0.088 Sum_probs=150.4
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
..|++++|.+++++..+.... . .+...++++.|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 356778888888877664321 1 011157888888877664 456777888998888888
Q ss_pred HHHHC----CCCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C-CC--chhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 391 RMLAS----QIKP-DHITFNDVMGACAKMASLEMVTQLHCYITKTG--L-AF--DVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 391 ~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
+..+. +-.+ -..+|..+...+...|++++|...+++..+.- . .+ ...++..+..+|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76543 2111 13467778888888899999999888776431 1 11 24567778888888 99999988888
Q ss_pred hCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccCchHHHHHHHH
Q 043608 461 FMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 461 ~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+..+ .+ ..++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7763 11 356777888888999999999999888753 11111 2256667777778899999999998
Q ss_pred HHHHhhCCCCCcc---hhHHHHHHHHhcCChhHHHHH
Q 043608 527 IMENEYGIIPTRE---HCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 527 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 560 (579)
+.. ...-.++.. ....++.++ ..|+.+.+.++
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887 411111221 244555555 57777777663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-07 Score=72.43 Aligned_cols=139 Identities=8% Similarity=-0.121 Sum_probs=91.2
Q ss_pred HHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 179 AMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
..+...|++++|+..++..... +...+..+...|.+.|++++|.+.|++..+..
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----------------------- 61 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----------------------- 61 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 3445566777777777665553 34456677788888888888888888887764
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHH-HHHHHHcCCCCC
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQV-HSYIIKMGFDSN 333 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~ 333 (579)
+.+..+|..+..++.+.|++++|...|+...+. .| +...+..+...+.+.|+.+++.+. ++...+.. +.+
T Consensus 62 -----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~ 133 (150)
T 4ga2_A 62 -----ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGS 133 (150)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTC
T ss_pred -----CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCC
Confidence 456777888888888888888888888887764 34 345566666666777776655543 46666654 224
Q ss_pred chhHHHHHHHHHhcC
Q 043608 334 VPVCNAILTMYAKCS 348 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~ 348 (579)
+.++......+...|
T Consensus 134 ~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhC
Confidence 455555555544444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.2e-07 Score=91.33 Aligned_cols=150 Identities=9% Similarity=-0.078 Sum_probs=109.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887752 33567788888899999999999999999887653 3577888899999999999999999
Q ss_pred HhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc---CchHHHHHHHHHHHHh
Q 043608 459 FNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV---GLVEEGLHLYRIMENE 531 (579)
Q Consensus 459 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 531 (579)
+++..+ .+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998763 456788888999999999999999999998863 23566888888889888 9999999999998865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=75.55 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccC
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVG 516 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 516 (579)
.+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..|++..+. .| +...+..+...+.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 344444444444444444444431 23444555555555555555555555555543 23 2345555555555555
Q ss_pred chHHHHHH-HHHHHHhhCCCC-CcchhHHHHHHHHhcC
Q 043608 517 LVEEGLHL-YRIMENEYGIIP-TREHCSCVVDLLARAG 552 (579)
Q Consensus 517 ~~~~a~~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 552 (579)
++++|.+. +++..+. .| ++..|......+.+.|
T Consensus 114 ~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 55443332 3444432 23 2334444444444444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-06 Score=70.90 Aligned_cols=129 Identities=8% Similarity=-0.108 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 174 QNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
+..+...+...|++++|...|++...++...|..+...+...|++++|.+.+++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 34456677888999999999999888888889999999999999999999999988764
Q ss_pred HHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--------------C-ChHHHHHHHHHhhcccchhhH
Q 043608 254 ILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELL--------------P-DGLTVHSLLCACIGRLTLYQG 318 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~~~~~~a 318 (579)
+.+...|..+..++...|++++|.+.|+...+.... | ....+..+..++...|++++|
T Consensus 68 -------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 68 -------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 456778888889999999999999999988875211 1 114566666777778888888
Q ss_pred HHHHHHHHHcCC
Q 043608 319 MQVHSYIIKMGF 330 (579)
Q Consensus 319 ~~~~~~~~~~~~ 330 (579)
...++...+...
T Consensus 141 ~~~~~~al~~~p 152 (213)
T 1hh8_A 141 EEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHcCc
Confidence 888888776643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.7e-06 Score=73.49 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCC-CCCChH----HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc-----hhHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRE-LLPDGL----TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV-----PVCNA 339 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 339 (579)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...++.+.+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3567778888888888888877642 122211 1223444455556677777777766664322211 13455
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~ 359 (579)
+...|...|++++|...|+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=87.34 Aligned_cols=149 Identities=11% Similarity=-0.044 Sum_probs=114.9
Q ss_pred cCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHH
Q 043608 347 CSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 347 ~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
.|++++|.+.+++. ...| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999886 3333 56789999999999999999999999998863 345778888999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc---CCcHHHHHHHHHHHhCC
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQF---GCGDEALKLFTRMRSLG 497 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~ 497 (579)
++..+... .+...+..+..+|.+.|++++|.+.+++..+ .+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998753 3678889999999999999999999998863 4567788899999999 99999999999999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=73.21 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHh----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQ-IKPDHI----TFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNG 441 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 441 (579)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3555666777777777777766542 122211 2334555566667777777777777763322 22 225777
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHH
Q 043608 442 LMDIYIKCGSLGSARKLFNFMEN------PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLV 506 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 506 (579)
+..+|...|++++|...++++.+ .+ ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888877777652 11 236677888888999999999988887642 22222 55788
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHh
Q 043608 507 GVLTACSHVGL-VEEGLHLYRIMENE 531 (579)
Q Consensus 507 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 531 (579)
.+..++.+.|+ +++|.+.+++...-
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999994 69999998887754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-06 Score=75.28 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-----hHHHHHHHHHhccCChHHHHHHHHHHHHcCCC---Cc--hh
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-----ITFNDVMGACAKMASLEMVTQLHCYITKTGLA---FD--VF 437 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 437 (579)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677777888888777776664322111 11223344455666777777766666532211 11 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC-----CCC-----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCCC-h
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFME-----NPD-----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----VSPN-L 502 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~-~ 502 (579)
+++.+...|...|++++|...++++. .|+ ..++..+...|...|++++|+..+++..+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55556666666666666666665543 122 1345555566666666666666666554321 1111 3
Q ss_pred hHHHHHHHHhhccCchHHH-HHHHHHHH
Q 043608 503 VTLVGVLTACSHVGLVEEG-LHLYRIME 529 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 529 (579)
.+|..+..++...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3555566666666666666 55555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=71.86 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=167.3
Q ss_pred hhHhhhcCCh-hHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcch--hhhhhhhHHHHHHHhCCCCChhHHHHHHHHH--
Q 043608 6 VSSLCKQNLY-NEALVAYDFSQNNTNIRIRPSTYAGLISACSSLR--SLQLGRKVHDHILLSKCQPDVVLQNHILNMY-- 80 (579)
Q Consensus 6 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 80 (579)
+++..+.|.. ++|++.++.+... .|-+..+++.--..+...+ +++++++.++.++... +-+..+|+..-..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3444555555 6899999999985 3334446666666677777 9999999999999887 56667777666666
Q ss_pred --Hcc---CChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChh--hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 81 --GKC---GSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQEN--DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 81 --~~~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
... +++++++++++.+.+ .|-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 555 789999999998874 45567777777777788888 9999999999874 346667776666666666
Q ss_pred c------chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHH-HHHHhcccCC------CcHhhHHHHHHHHHhcCC
Q 043608 151 S------VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILD-ARNVFSGIAR------KDVTSWGSMIAAFSKLGY 217 (579)
Q Consensus 151 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~ 217 (579)
. ++++++.++.+.... +.|...|+-+-..+.+.|+... +..+.+++.. ++..++..++..+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 888999998888875 4677888888888888887443 4455555432 366788899999999999
Q ss_pred hHHHHHHHHHHHhc
Q 043608 218 ELEALCHFNEMLHH 231 (579)
Q Consensus 218 ~~~a~~~~~~m~~~ 231 (579)
.++|.++++.+.++
T Consensus 274 ~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 274 YNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-05 Score=68.32 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH--HHHHHHHHHHHcC
Q 043608 380 NQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE--MVTQLHCYITKTG 431 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~ 431 (579)
+++++++..++++.+.. +-+...|+.-...+...|.++ ++.+.++++.+..
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 34455555555554432 223444444444444444444 4444555444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-07 Score=75.13 Aligned_cols=153 Identities=11% Similarity=-0.002 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCC
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 451 (579)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+. +.. .....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567777777755444331 1234556666667777777777777777766531 111 123445555666666666
Q ss_pred HHHHHHHHhhCCC-----C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CCC--hhHHHHHHHHhhccC
Q 043608 452 LGSARKLFNFMEN-----P-D----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV---SPN--LVTLVGVLTACSHVG 516 (579)
Q Consensus 452 ~~~A~~~~~~~~~-----~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g 516 (579)
+++|...+++..+ + + ...+..+...+...|++++|...+++..+... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 6666666655431 2 2 12344455555566666666666665543210 111 123445555555666
Q ss_pred chHHHHHHHHHHHH
Q 043608 517 LVEEGLHLYRIMEN 530 (579)
Q Consensus 517 ~~~~a~~~~~~~~~ 530 (579)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=69.86 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH 514 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 514 (579)
.+..+...+.+.|++++|...|+.+.+ | +...|..+..+|...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 333444444444555555444444431 2 23344444444444444445544444444431 1123344444444444
Q ss_pred cCchHHHHHHHHHHH
Q 043608 515 VGLVEEGLHLYRIME 529 (579)
Q Consensus 515 ~g~~~~a~~~~~~~~ 529 (579)
.|++++|...|++..
T Consensus 117 lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 117 LKAPLKAKECFELVI 131 (151)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-06 Score=70.05 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 34444555555566666555555441 234555556666666666666666666666542 22345566666666666
Q ss_pred CchHHHHHHHHHHHHhhCCCC-Ccchh--HHHHHHHHhcCChhHHHHHHHhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIP-TREHC--SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|++++|...+++..+. .| +...+ ..+...+.+.|++++|...+++.
T Consensus 95 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677776666666643 22 22233 22333355666666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.1e-06 Score=71.89 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhcc
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHV 515 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~ 515 (579)
-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3455566677777777777777763 433344445556667777777777776543321 111 22556667777777
Q ss_pred CchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSL 576 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 576 (579)
|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+...+..|
T Consensus 185 G~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 185 ALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 7777777777777632 22143 234455666777777777777777777 344554444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-06 Score=65.57 Aligned_cols=91 Identities=8% Similarity=-0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
......|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..+++..+. -+.+...|..+..+|..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 334444555555555555555554432 223444555555555555555555555555432 11123344455555555
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (126)
T 4gco_A 94 MREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.5e-06 Score=73.56 Aligned_cols=162 Identities=12% Similarity=-0.038 Sum_probs=120.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hh
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTGLAFD-----VFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VV 468 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~ 468 (579)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778899999999999988876543221 12234466677888999999999887642 22 34
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC-CCCCC-----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCC-Cc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL-GVSPN-----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY---GIIP-TR 538 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~ 538 (579)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998731 01222 2588899999999999999999999987541 1111 14
Q ss_pred chhHHHHHHHHhcCChhHH-HHHHHhh
Q 043608 539 EHCSCVVDLLARAGCVHEA-EDFINQM 564 (579)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 564 (579)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5678889999999999999 7767665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.8e-07 Score=71.09 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 511 (579)
+...+..+...+.+.|++++|...|+... . .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34455566667777777777777777665 2 355666677777777777777777777777642 2245566677777
Q ss_pred hhccCchHHHHHHHHHHHHh
Q 043608 512 CSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6e-06 Score=63.45 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444445555555555555555554431 234455555566666666666666666665542 224455556666666
Q ss_pred ccCchHHHHHHHHHHHH
Q 043608 514 HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~ 530 (579)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-06 Score=65.01 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 511 (579)
+...+..+...+.+.|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344455555566666666666666665442 244555666666666677777777777666642 2245566666666
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC
Q 043608 512 CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG 552 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (579)
+...|++++|...+++..+. .+.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 77777777777777766643 1122334455555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=65.09 Aligned_cols=105 Identities=9% Similarity=-0.075 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhC-CCCC----cchhHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYG-IIPT----REHCSC 543 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 543 (579)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++..+... ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556666777777777777777777642 22355666777777777777777777777664311 1111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHhh-cCCCChhHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM-ACDADIVVWK 574 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 574 (579)
+..++...|++++|++.+++. ...||+.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 666677777777777777765 3345554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=71.22 Aligned_cols=150 Identities=12% Similarity=-0.045 Sum_probs=88.4
Q ss_pred hcCChHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCChH
Q 043608 346 KCSVLCNALLVFKELGKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASLE 418 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 418 (579)
..|++++|.+.++.+... .....+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345666666632222111 13445666666666777777777777665441 1111 2334555666667777777
Q ss_pred HHHHHHHHHHHc----CCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhcCCc
Q 043608 419 MVTQLHCYITKT----GLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDV----VSWSSLILGYAQFGCG 483 (579)
Q Consensus 419 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~ 483 (579)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ ++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665532 1111 234466677777777888887777776542 222 2356677778888999
Q ss_pred HHHHHHHHHHHh
Q 043608 484 DEALKLFTRMRS 495 (579)
Q Consensus 484 ~~a~~~~~~m~~ 495 (579)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=70.76 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=79.5
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH-HHccCCh
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM-YGKCGSL 86 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 86 (579)
.+...|++++|+..++..... .+.+...+..+...+...|++++|...++...+.. +.+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 355667777777777777664 34455677777777777788888888887777665 4456666666666 6667777
Q ss_pred --hhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 87 --EDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 87 --~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
++|...+++..+ | +...+..+...+...|++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766652 3 3456666667777777777777777777765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.31 E-value=6e-06 Score=68.34 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=79.1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHH-HHhcCCc--HH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILG-YAQFGCG--DE 485 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~ 485 (579)
...|++++|...++...+.. +.+...+..+..+|...|++++|...+++..+ .+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666666544 23556666777777777777777777776652 345566666777 6677887 88
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887753 224567777888888888888888888888753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=63.59 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+......|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3455566677777777777777776652 356677777788888888888888888887753 234567778888888
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.2e-06 Score=63.31 Aligned_cols=116 Identities=10% Similarity=-0.014 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34445555566666666666666665542 345566667777777777777777777777642 23455677777777
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh
Q 043608 513 SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV 554 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (579)
...|++++|...+++..+. .+.+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 7888888888888777754 122444566666677666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-05 Score=64.43 Aligned_cols=122 Identities=7% Similarity=-0.051 Sum_probs=72.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 483 (579)
+...+...|++++|...++...+... .+...+..+..++...|++++|...+++..+ .+...|..+...+...|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 33344444444444444444443321 1344455555555666666666666655442 3455667777788888888
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHH--HHHHhhccCchHHHHHHHHHHHH
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVG--VLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
++|.+.+++..+.. +.+...+.. .+..+...|++++|...++....
T Consensus 98 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 98 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888753 223444433 33336678888888888887654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-06 Score=66.36 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+.+.|++++|...|+.+. . .+...|..+..+|...|++++|+..|++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 334445555666666666666666554 2 244555666666666666666666666666542 223445556666666
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|...|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=76.31 Aligned_cols=92 Identities=9% Similarity=-0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHh
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQ 378 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 378 (579)
.+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...++.. ...| +...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444445555555555555554442 123344444444444444444444444443 1111 23344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 043608 379 HNQAEELFRLFSRML 393 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~ 393 (579)
.|++++|...|++..
T Consensus 85 ~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 85 MESYDEAIANLQRAY 99 (281)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-06 Score=61.98 Aligned_cols=95 Identities=18% Similarity=0.056 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC--CcchhHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP--TREHCSCV 544 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 544 (579)
...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 4456666777777888888888888877653 234566777777788888888888888887753 222 35567777
Q ss_pred HHHHHhc-CChhHHHHHHHhh
Q 043608 545 VDLLARA-GCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~-g~~~~A~~~~~~~ 564 (579)
..++.+. |++++|.+.+++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 7788888 8888888888777
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.4e-05 Score=59.08 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=63.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~la~~~~~~~~~~ 60 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------PNNAEAWYNLGNAYYKQGDYD 60 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------cCcHHHHHHHHHHHHHhCCHH
Confidence 4456666667777777777777777776653 345556666777777777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 282 EAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
+|...++++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 61 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 61 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 7777777766542 2234455555556666666666666666665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-06 Score=75.89 Aligned_cols=86 Identities=14% Similarity=-0.021 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .| +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 344555555555555555555555555532 123445555555555555555555555555542 22 2334455555
Q ss_pred HHHhcCChhHH
Q 043608 547 LLARAGCVHEA 557 (579)
Q Consensus 547 ~~~~~g~~~~A 557 (579)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555555
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=64.10 Aligned_cols=100 Identities=13% Similarity=-0.033 Sum_probs=65.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|++..... +.+...|..+..++...|++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------------P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------------FYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHHccH
Confidence 44566666677777777777777777777664 45666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
++|+..|++..... +-+...+..+..++...|++++|...|+...+..
T Consensus 87 ~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 87 QQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777776542 2234455555556666666666666666666553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.3e-05 Score=67.53 Aligned_cols=218 Identities=11% Similarity=-0.023 Sum_probs=155.2
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcch-hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc-C-C
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLR-SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC-G-S 85 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 85 (579)
+.+.+..++|+++++.+... .+-+..+++.--..+...| .+++++++++.++... +-+..+|+....++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33445667899999999986 3334445665555566667 5999999999999877 66778888887777776 7 8
Q ss_pred hhhHHHhhcCCCCCC---eeehhHHhhhhhcCCChh--------hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCc---
Q 043608 86 LEDARMGFDKMPQRN---VVSWTAMIAGCSQNYQEN--------DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGS--- 151 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~--- 151 (579)
+++++++++.+.+.+ -.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999999988644 445555444454555555 8999999999874 4467788887777777775
Q ss_pred ----chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH--------------------HHHHHHhcccCC--------
Q 043608 152 ----VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI--------------------LDARNVFSGIAR-------- 199 (579)
Q Consensus 152 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~-------- 199 (579)
++++++.++++.... +.|...|+-+-..+.+.|+- ....+...++..
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 578888888887765 45667777666666665543 334444443332
Q ss_pred -CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 200 -KDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 200 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
++..+...++..|...|+.++|.++++.+.++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 35667888999999999999999999998754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-05 Score=68.90 Aligned_cols=124 Identities=7% Similarity=-0.100 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccC
Q 043608 339 AILTMYAKCSVLCNALLVFKELG-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMA 415 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~ 415 (579)
.+...+...|++++|.++|+.+. ..|+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...|
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 34445555566666666665552 22332233444445555666666666665332211 110 123444555566666
Q ss_pred ChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 416 SLEMVTQLHCYITKTGLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
++++|+..|++.......| ..........++.+.|+.++|..+|+++.
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666555322213 22334445555666666666666666655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-06 Score=74.45 Aligned_cols=95 Identities=9% Similarity=-0.106 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+... .+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 334444455555555555555555554431 12344444555555555555555555555544321 2344555555555
Q ss_pred HHcCCHHHHHHHHhhCC
Q 043608 447 IKCGSLGSARKLFNFME 463 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~ 463 (579)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55556665555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-05 Score=62.31 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.... -+.++..+..+..+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHH
Confidence 3344444555555555555555554432 123444444555555555555555555555432 1122334444555555
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.2e-06 Score=62.74 Aligned_cols=91 Identities=9% Similarity=-0.124 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+. -+.+...+..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 334444444555555555555544431 123344444444555555555555555554432 11123344444455555
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|...+++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 55555555554444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=60.13 Aligned_cols=93 Identities=14% Similarity=-0.044 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34445555555666666666666655532 223445555555566666666666666665543 122334555555666
Q ss_pred HhcCChhHHHHHHHhh
Q 043608 549 ARAGCVHEAEDFINQM 564 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~ 564 (579)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666666666555
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-05 Score=71.99 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
+...+..+...+.+.|++++|...|++..... |+...+ ..+.+.++- +.....+..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45567777777777888888888887776642 221100 001111100 001456677777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 445 IYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
+|.+.|++++|...++++.+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877763 456778888888999999999999999988853 23466788888888888998888
Q ss_pred -HHHHHHHHH
Q 043608 522 -LHLYRIMEN 530 (579)
Q Consensus 522 -~~~~~~~~~ 530 (579)
...++.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-05 Score=75.01 Aligned_cols=121 Identities=9% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHHhcCChHHHHHHHHHc----CCCCCh---------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCc
Q 043608 341 LTMYAKCSVLCNALLVFKEL----GKNADS---------------VSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPD 400 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~----~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 400 (579)
...+.+.|++++|++.|..+ +...+. .++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556677777777777665 111111 125566666777777777777766654321 1111
Q ss_pred Hh----HHHHHHHHHhccCChHHHHHHHHHHHH----cCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 401 HI----TFNDVMGACAKMASLEMVTQLHCYITK----TGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 401 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.. ..+.+-..+...|+.+.+..++..... .+..+ -..++..+...|...|++++|..++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 11 111222233344566666666555442 11111 123334444444455555555444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.4e-05 Score=58.50 Aligned_cols=119 Identities=7% Similarity=-0.090 Sum_probs=75.6
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~ 62 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------PANAVYFCNRAAAYSKLGNY 62 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------CCCHHHHHHHHHHHHHhhch
Confidence 34566667777777888888888888777653 34566677777777778888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
++|.+.++...... +.+...+..+...+...|+++.|...++...+... .+...+..+..++...|+
T Consensus 63 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 63 AGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 88888887776642 22344555555666666666666666666665532 234444445555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=61.39 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC--CCC----hhHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV--SPN----LVTLVGV 508 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 508 (579)
.+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344566667777777777777776652 3455677777777778888888887777765321 111 2356667
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
..++...|++++|++.|++.... .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 77777888888888888887754 456554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-05 Score=58.57 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=61.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~~~~ 66 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------------PKDAKLYSNRAACYTKLLEF 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------------TTCHHHHHHHHHHHTTTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCcHHHHHHHHHHHHHhccH
Confidence 44566666777777777777777777766553 34556666666777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM 328 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 328 (579)
++|...+++..+.. +.+...+..+...+...|++++|...++...+.
T Consensus 67 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 67 QLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777666542 223444555555555566666666666655554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-05 Score=64.04 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555666666666666665542 245556666666667777777777777766642 22355666666677
Q ss_pred hccCchHHHHHHHHHHHHh
Q 043608 513 SHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~ 531 (579)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777766654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-05 Score=60.52 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|++.... -+.++..+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34444555666666666666666666542 224455666666666666666666666666643 122344555666666
Q ss_pred HhcCChhHHHHHHHhh
Q 043608 549 ARAGCVHEAEDFINQM 564 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~ 564 (579)
...|++++|...+++.
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=61.91 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC--CCC----hhHHHH
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV--SPN----LVTLVG 507 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 507 (579)
..+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555556666666666666665542 2344555555566666666666666666554321 111 345555
Q ss_pred HHHHhhccCchHHHHHHHHHHHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+..++...|++++|...+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55566666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-05 Score=62.52 Aligned_cols=96 Identities=14% Similarity=-0.060 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVV 545 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 545 (579)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++..+. -+.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34567788889999999999999999999863 336778999999999999999999999999975 233466888999
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
.+|...|++++|...+++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-05 Score=60.28 Aligned_cols=96 Identities=6% Similarity=-0.152 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLL 548 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 548 (579)
+..+...+.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..+++..+. .| +...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4445566677777777777777777642 224556667777777777777777777777653 33 344666677777
Q ss_pred HhcCChhHHHHHHHhh-cCCCC
Q 043608 549 ARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
...|++++|...+++. ...|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 7777777777777766 33443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=59.99 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
.+...+..+...+...|++++|...|+...+ .+...|..+..++...|++++|...+++..+.+ +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3456666777777777777777777776652 345566677777777777777777777777643 224556677777
Q ss_pred HhhccCchHHHHHHHHHHHHh
Q 043608 511 ACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777776643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=60.87 Aligned_cols=93 Identities=10% Similarity=-0.102 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+. .+.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34444444555555555555555555543 233 334444555555555555555555555432 1112334444
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+|...|++++|...+++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=6.9e-05 Score=56.61 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+...|++++|...++...+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445556666666777777666666542 345566667777777788888888887777652 234566777777788
Q ss_pred ccCchHHHHHHHHHHHH
Q 043608 514 HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~ 530 (579)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0074 Score=54.84 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC-ChHHHHHHHHHHH
Q 043608 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS-NANEAMSLFSEMR 291 (579)
Q Consensus 213 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 291 (579)
...+..++|+++++++.... +.+..+|+.--..+...| .+++++++++.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~n----------------------------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L 116 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN----------------------------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA 116 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhC----------------------------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445567888888887764 445566666666666666 4777777777777
Q ss_pred hCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-C-ChHHHHHHHHHc-CC-CCChh
Q 043608 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC-S-VLCNALLVFKEL-GK-NADSV 367 (579)
Q Consensus 292 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~-~~-~~~~~ 367 (579)
.. .|. +..+++.-...+.+. + ++++++++++.+ .. +-|..
T Consensus 117 ~~--nPK----------------------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~ 160 (349)
T 3q7a_A 117 VQ--NLK----------------------------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH 160 (349)
T ss_dssp HT--TCC----------------------------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred Hh--CCC----------------------------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence 54 332 222222222222222 2 344444444443 11 11333
Q ss_pred hHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC-------hHHHHHHHHHHHHcCC
Q 043608 368 SWNSIIAACLQHNQAE--------ELFRLFSRMLASQIKPDHITFNDVMGACAKMAS-------LEMVTQLHCYITKTGL 432 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 432 (579)
+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+.+.+. ++++.+..++......
T Consensus 161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 4443333333333333 6666666666653 3355556655555555544 4556666666555442
Q ss_pred CCchhHHHHHHHHHHHcCC
Q 043608 433 AFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~ 451 (579)
. |...++.+-..+.+.|+
T Consensus 240 ~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 240 H-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp T-CHHHHHHHHHHHHHTTC
T ss_pred C-CHHHHHHHHHHHHhcCC
Confidence 2 44555554444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.8e-05 Score=57.72 Aligned_cols=94 Identities=14% Similarity=-0.011 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3455556667777777777777776652 345677777788888888888888888887753 224667777888888
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888887754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.6e-05 Score=60.37 Aligned_cols=94 Identities=13% Similarity=-0.001 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-CCC----cchhHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI-IPT----REHCSCV 544 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 544 (579)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+...- .++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444455555555555555555555432 223444555555555555555555555555443110 111 3344455
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+|...|++++|.+.+++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 55555555555555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-05 Score=65.81 Aligned_cols=161 Identities=9% Similarity=-0.067 Sum_probs=86.6
Q ss_pred HHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI 254 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~ 254 (579)
.......|+++.+.+.++..... ....+..+...+.+.|++++|.+.|++..+.....|+.... .+.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~---- 84 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKK---- 84 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HHHHHHH----
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hHHHHHH----
Confidence 33445566677777666654332 34567788889999999999999999998763201100000 0000000
Q ss_pred HhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc
Q 043608 255 LFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV 334 (579)
Q Consensus 255 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (579)
......|..+..++.+.|++++|+..++...... +.+...+..+..++...|+++.|...++...+.. +.+.
T Consensus 85 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 156 (198)
T 2fbn_A 85 ------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL 156 (198)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred ------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH
Confidence 0012566777778888888888888888777642 2234455555566666666666666666666553 2233
Q ss_pred hhHHHHHHHHHhcCChHH
Q 043608 335 PVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~ 352 (579)
.++..+..++...++.++
T Consensus 157 ~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.1e-05 Score=58.68 Aligned_cols=87 Identities=17% Similarity=0.020 Sum_probs=43.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHH
Q 043608 442 LMDIYIKCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTA 511 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~ 511 (579)
+...+...|++++|...|+.+.+ |+. ..+..+..++...|++++|...+++..+.. |+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 33445555555555555555442 322 244445555555555555555555555432 22 2344455555
Q ss_pred hhccCchHHHHHHHHHHHH
Q 043608 512 CSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~ 530 (579)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-05 Score=62.61 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCC-ChhH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----VSP-NLVT 504 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~ 504 (579)
+..+...+...|++++|...+++..+ ++ ...+..+...+...|++++|.+.+++..+.. -.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555544431 11 1245556666677777777777776655421 011 1335
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666677777778888888777776643111111 235666777778888888888877765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00013 Score=54.38 Aligned_cols=65 Identities=6% Similarity=-0.169 Sum_probs=29.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHhhcc-cchhhHHHHHHHHHHc
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLP--DGLTVHSLLCACIGR-LTLYQGMQVHSYIIKM 328 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 328 (579)
+...+..+...+...|++++|...+++..+.. +. +...+..+...+... |++++|.+.++...+.
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 34444455555555555555555555554431 11 233334444444444 4444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.5e-05 Score=58.68 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGV 508 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 508 (579)
+...+..+...+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 344555566666666667776666666543 44 4566667777778888888888888877652 2245677777
Q ss_pred HHHhhccCchHHHHHHHHHHHHh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++...|++++|...|++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 77888888888888888887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=9.2e-05 Score=57.90 Aligned_cols=95 Identities=9% Similarity=-0.151 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. . +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence 3444445555555555555555555555432 123344555555555555555555555555442 1 112334445555
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
+|...|++++|...+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00057 Score=65.75 Aligned_cols=209 Identities=7% Similarity=-0.126 Sum_probs=138.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043608 209 IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFS 288 (579)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (579)
...+.+.|++++|++.|..+.+......+............ .....++..+...|...|++++|.+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRR-----------NEQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567889999999999999876431111000000000000 0001246778899999999999999998
Q ss_pred HHHhCC-CCCChH---HHHHHH-HHhhcccchhhHHHHHHHHHHc----CCCC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 289 EMRDRE-LLPDGL---TVHSLL-CACIGRLTLYQGMQVHSYIIKM----GFDS-NVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 289 ~m~~~g-~~p~~~---~~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
.+...- ..++.. .....+ ..+...|+.+.+..++...... +..+ -..++..+...+...|++++|..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 876531 122222 222223 3445678899999998887653 2222 24567788999999999999999998
Q ss_pred Hc-------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc--HhHHHHHHHHHhccCChHHHHHHH
Q 043608 359 EL-------GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKPD--HITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 359 ~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
++ ..++ ....+..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 76 1122 2346888899999999999999999886542 22222 235566667788899999999888
Q ss_pred HHHH
Q 043608 425 CYIT 428 (579)
Q Consensus 425 ~~~~ 428 (579)
....
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=5.9e-05 Score=63.62 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 566677777888888888888888887752 334667777888888888888888888887754 33 4456666777
Q ss_pred HHHhcCChhHHH-HHHHhh
Q 043608 547 LLARAGCVHEAE-DFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~-~~~~~~ 564 (579)
++...|+.+++. ..+.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777666666 444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=60.59 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHH
Q 043608 449 CGSLGSARKLFNFMENP------DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
.|++++|...|++..+- +...|..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555566666555432 12345555556666666666666666666542 123445555666666666666666
Q ss_pred HHHHHHHHh
Q 043608 523 HLYRIMENE 531 (579)
Q Consensus 523 ~~~~~~~~~ 531 (579)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-06 Score=76.48 Aligned_cols=119 Identities=8% Similarity=0.050 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC
Q 043608 69 DVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG 148 (579)
Q Consensus 69 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 148 (579)
.+.+|..+..+..+.+++.+|++.|=+. .|+..|..++.+..+.|.+++-+..+.-.++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4566777888888888888887766443 456678888888888888888888887776653 233444678888888
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 888776655542 3555555666777777777777777776554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0003 Score=54.16 Aligned_cols=89 Identities=18% Similarity=0.087 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-h---hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPN-L---VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCS 542 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 542 (579)
..+...+...|++++|...|++..+.. |+ . ..+..+..++...|++++|...+++..+. .|+ ...+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~ 80 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHH
Confidence 344556667777777777777777642 32 2 35666677777777777777777777754 233 34466
Q ss_pred HHHHHHHhcCChhHHHHHHHhh
Q 043608 543 CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+..+|.+.|++++|...++++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777777776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-05 Score=58.64 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=66.9
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhc
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQ 113 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 113 (579)
.+..+...+.+.|++++|...++..++.. +.+...+..+..++...|++++|+..|++..+ | +...+..+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44455666777788888888888877766 55677777777777778888888887777652 3 45567777777777
Q ss_pred CCChhhHHHHHHHHHHC
Q 043608 114 NYQENDAIKLYIQMLQS 130 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~ 130 (579)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.2e-05 Score=60.42 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL----GVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555566666666666666665432 1111 1335666777777788888888887776653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=60.27 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------------------ChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENP---------------------DVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
...+......+.+.|++++|...|....+. +...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566677777778888877777765421 12456666667777777777777777777
Q ss_pred hCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 495 SLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 495 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 642 224556667777777777777777777777643
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.78 E-value=5.8e-06 Score=76.12 Aligned_cols=452 Identities=10% Similarity=0.075 Sum_probs=252.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+.|-++..+.++..+|++-|-+. .|+..|..++.+..+.|.++.-...+....+.. .++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 3778888889999999998887432 377788899999999999999998888777653 3445556888999
Q ss_pred HccCChhhHHHhhcCCCC-----------------------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcc
Q 043608 81 GKCGSLEDARMGFDKMPQ-----------------------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQF 137 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 137 (579)
++.+++.+-++++..--. .++..|..|...+.+.|++..|.+.-++ .-++.
T Consensus 127 Ak~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK------Ans~k 200 (624)
T 3lvg_A 127 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK------ANSTR 200 (624)
T ss_dssp HTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSC
T ss_pred HhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh------cCChh
Confidence 999988876665533210 1223344444555555555555443222 23667
Q ss_pred cHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC---CCcHhhHHHHHHHHHh
Q 043608 138 TFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA---RKDVTSWGSMIAAFSK 214 (579)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 214 (579)
||..+-.+|...+++..|.-.--.++-. ..-...++..|-..|.+++-+.+++.-. +.....|+-|.-.|++
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 8888888888888887776554333322 2222345666778888888777777543 3355566666666665
Q ss_pred cCChHHHHHHHHHHHhc-CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043608 215 LGYELEALCHFNEMLHH-GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDR 293 (579)
Q Consensus 215 ~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (579)
- ++++..+.++..-.+ ++ | -++.+| .....|..++-.|.+-.+++.|.... .++
T Consensus 276 Y-~PeKlmEHlklf~sriNi--p------Kvirac-------------E~ahLW~ElvfLY~~ydE~DnA~ltM---i~h 330 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNI--P------KVLRAA-------------EQAHLWAELVFLYDKYEEYDNAIITM---MNH 330 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCC--T------TTHHHH-------------TTTTCHHHHHHHHHHHTCHHHHHHTT---TSC
T ss_pred c-CHHHHHHHHHHHHHhccH--H------HHHHHH-------------HHHhhHHHHHHHHhcchhHHHHHHHH---HhC
Confidence 4 456665555443221 11 0 001111 23445666666677666666554322 211
Q ss_pred CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHH
Q 043608 294 ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSII 373 (579)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 373 (579)
+|+..-...+-....+..+.+---+.+...+ .-.+...+.|+.++...=|..++.++|+..+.-|=+..|-.-
T Consensus 331 --~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~- 403 (624)
T 3lvg_A 331 --PTDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS- 403 (624)
T ss_dssp --HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTS-
T ss_pred --ChhhccHHHHHHHHHHcchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHH-
Confidence 1111111111222233333332222222222 334445677777777777777777777776433222111000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHH
Q 043608 374 AACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLG 453 (579)
Q Consensus 374 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 453 (579)
.+..+...+-+.+.++.-. .-|..+...-|..|-.-.....|.++- + .+-......-...|.+.++++
T Consensus 404 ---Vq~~N~~aVNeAln~L~IE--EEDy~~LR~SId~ydNFD~i~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~ 471 (624)
T 3lvg_A 404 ---VQNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQRLE----K---HELIEFRRIAAYLFKGNNRWK 471 (624)
T ss_dssp ---CCCSCCHHHHHHHHHHHHH--TTCCHHHHHTTSSCCCSCTTHHHHHHH----T---CSSHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHhhHHHHHHHHHHHHhh--hhhHHHHHHHHHHhccccHHHHHHHHh----h---CchHHHHHHHHHHHHhcccHH
Confidence 0112222233333332111 123333444444444444444444432 1 112333334455678888898
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 454 SARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
++..+.++=. .|.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 472 qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 472 QSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8877655432 22223444556788888888888887755 556677777777777777776665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=58.59 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------c
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-------R 538 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~ 538 (579)
+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|+..+++..+ ..|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence 34567778888889999999999999988863 33567888889999999999999999999884 3555 4
Q ss_pred chhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 539 EHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
..+..+..++...|+.+.|...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 456667777778888888877776663
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00016 Score=69.88 Aligned_cols=137 Identities=12% Similarity=-0.054 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhc
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 480 (579)
...+..+...+.+.|++++|...|++..+........ .-+... .........|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~----~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------SEKESK----ASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------ChHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666777777777776666533221100 000000 00000023444444455555
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAE 558 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 558 (579)
|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+..++.+.|+.++|.
T Consensus 331 g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 331 REYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554432 11334444555555555555555555555542 122 2334444444555555444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.3e-05 Score=77.95 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=78.4
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+-..+.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|.+.+++.++.. +.+...+..+..+|..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34455667778888888888877775 34456677777777788888888888888877765 4556677777777777
Q ss_pred cCChhhHHHhhcCCCC--C-CeeehhHHhhh--hhcCCChhhHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ--R-NVVSWTAMIAG--CSQNYQENDAIKLYI 125 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (579)
.|++++|++.|++..+ | +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777766542 2 23344444444 556677777777666
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.73 E-value=4.6e-05 Score=74.06 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=61.0
Q ss_pred HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHH
Q 043608 447 IKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 523 (579)
.+.|++++|.+.+++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555554431 234556666666666666666666666666642 2234566666666667777777777
Q ss_pred HHHHHHHhhCCCC-CcchhHHHHHH--HHhcCChhHHHHHHH
Q 043608 524 LYRIMENEYGIIP-TREHCSCVVDL--LARAGCVHEAEDFIN 562 (579)
Q Consensus 524 ~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 562 (579)
.+++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77666653 22 23344444444 566667777776666
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.012 Score=53.18 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchhHHHH
Q 043608 365 DSVSWNSIIAACLQHN--QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS-LEMVTQLHCYITKTGLAFDVFVMNG 441 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (579)
+..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-...+...|. ++++.+.++.+.+..+. |...|+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 4444444444444444 2555555555555542 2244444444444444444 35555555555554422 3344444
Q ss_pred HHHHHHHc--------------CCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhc-----------CCcHHHHHHHHHH
Q 043608 442 LMDIYIKC--------------GSLGSARKLFNFME--N-PDVVSWSSLILGYAQF-----------GCGDEALKLFTRM 493 (579)
Q Consensus 442 l~~~~~~~--------------~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m 493 (579)
....+.+. +.++++++.++... . .|...|+-+-..+.+. +.++++++.++++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 33333332 23445555555444 2 2344444333333332 3356777777777
Q ss_pred HhCCCCCCh-hHHHHHH---HHhhccCchHHHHHHHHHHHH
Q 043608 494 RSLGVSPNL-VTLVGVL---TACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 494 ~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+. .||. .++..++ .+....|..+++..++.++.+
T Consensus 265 le~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 265 QEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred Hhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 764 4543 1222211 122234566666777777664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=8.5e-05 Score=56.28 Aligned_cols=83 Identities=8% Similarity=0.105 Sum_probs=44.9
Q ss_pred cCCcHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHH
Q 043608 480 FGCGDEALKLFTRMRSLGV-SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (579)
.|++++|+..|++..+.+. .| +...+..+..++...|++++|...+++..+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666665421 12 2345556666666666666666666666643 122344555566666666666666
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
...+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00017 Score=67.45 Aligned_cols=138 Identities=7% Similarity=-0.016 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG 481 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 481 (579)
..+..+...+.+.|++++|...+++..+.-. .. ......+++. .....+...|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAEDADGA----KLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCHHHHG----GGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccChHHHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 3455666667777777777777766654210 00 0000000000 011123456777888888889
Q ss_pred CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .| +...+..+..++.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 224667888888888999999999999888864 34 44566667777777777776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.01 Score=53.59 Aligned_cols=181 Identities=8% Similarity=-0.009 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC-HHHHHHH
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMA--SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS-LGSARKL 458 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 458 (579)
+++++..++.+.... +-+..+|+.-...+...+ .++++..+++.+.+.... |...|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 578888888888763 446677777666666667 489999999999987643 77778777777778888 5899999
Q ss_pred HhhCCC---CChhhHHHHHHHHHhc--------------CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc------
Q 043608 459 FNFMEN---PDVVSWSSLILGYAQF--------------GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV------ 515 (579)
Q Consensus 459 ~~~~~~---~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 515 (579)
++.+.+ .|...|+.....+.+. +.++++++.+++..... +-|...|+.+-..+...
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 888874 4667787766665554 45788999999998853 23556666554444443
Q ss_pred -----CchHHHHHHHHHHHHhhCCCCCcchhHHHHH-----HHHhcCChhHHHHHHHhh-cCCCC
Q 043608 516 -----GLVEEGLHLYRIMENEYGIIPTREHCSCVVD-----LLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 516 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+.++++++.++++.+. .|+. .|..+.. ..-..|..+++..++.++ ...|.
T Consensus 247 ~~~~~~~l~~el~~~~elle~---~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL---EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHHHHHHHHhh---Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4588999999999864 5664 3332222 222467788999999888 34443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.6e-05 Score=68.27 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=84.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhc
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 480 (579)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 4556677788889999999999999877653 22221 122333334333322 23678888999999
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHH-HHhcCChhHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDL-LARAGCVHEAE 558 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~ 558 (579)
|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+ +.|+ ...+..|..+ ....+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998853 33567889999999999999999999998874 3454 4455555555 23456778888
Q ss_pred HHHHhh-cCCCC
Q 043608 559 DFINQM-ACDAD 569 (579)
Q Consensus 559 ~~~~~~-~~~~~ 569 (579)
..+.+| ...|+
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 888888 33343
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00056 Score=66.12 Aligned_cols=142 Identities=8% Similarity=-0.014 Sum_probs=94.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
....+..+...+.+.|++++|...|++..+.. |+...+ . .+...+ .. ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH----HH----HHHHHHHHHHHH
Confidence 45578888999999999999999999988742 221100 0 000000 00 012345666777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHH
Q 043608 445 IYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 520 (579)
+|.+.|++++|...++++.+ .+...|..+..+|...|++++|...|++..+. .| +...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877777663 45667777888888888888888888888875 44 35577777777888888777
Q ss_pred HHH-HHHHHH
Q 043608 521 GLH-LYRIME 529 (579)
Q Consensus 521 a~~-~~~~~~ 529 (579)
+.+ .+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 654 455444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=54.78 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=74.4
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCC------hhHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPD------VVLQNH 75 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 75 (579)
|..+-..+.+.|++++|++.|++.... .+.++..+..+..++...|++++|...++..++.. +.+ ...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 345667788899999999999998885 44567788888888999999999999999998765 333 556667
Q ss_pred HHHHHHccCChhhHHHhhcCCCC
Q 043608 76 ILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 76 l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
+..++...|+++.|.+.++++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHhHhhhHhHHHHhHH
Confidence 77777888888888888877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00051 Score=54.11 Aligned_cols=93 Identities=17% Similarity=-0.027 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-------------hhHHHHHHHHhhccCchHHHHHHHHHHHHh----h
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-------------LVTLVGVLTACSHVGLVEEGLHLYRIMENE----Y 532 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 532 (579)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344556677778888888888887764 333 227888888889999999999998888752 1
Q ss_pred CCCCC-cchh----HHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPT-REHC----SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|+ ...| .....++...|++++|+..|++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 22554 3466 77888999999999999999887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00068 Score=54.77 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHc--------C---------CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKT--------G---------LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
..+......+.+.|++++|...|....+. . -+.+...+..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666777777777777777776654 1 011235666677777777777777777776652
Q ss_pred ---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 465 ---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 465 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566777777777777777777777777764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00046 Score=54.35 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC-----CCCCC-hhHH----HHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL-----GVSPN-LVTL----VGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888999999999999888873 11565 4477 88899999999999999999998853
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=66.36 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=47.8
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcc------------------cHHHHHHHhhcchhhhhhhhHHHHHHHhC
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPS------------------TYAGLISACSSLRSLQLGRKVHDHILLSK 65 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 65 (579)
.+-..+.+.|++++|+..|+++... .|+.. .|..+..++.+.|++++|...++..++..
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445667778888888888877664 12211 34444444445555555555555555443
Q ss_pred CCCChhHHHHHHHHHHccCChhhHHHhhcCCC
Q 043608 66 CQPDVVLQNHILNMYGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 97 (579)
+.+...+..+..+|...|++++|+..|++..
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444555555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00044 Score=50.42 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|..+...|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777778888888888888888887753 224557777888888888888888888877653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00081 Score=62.80 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+.+.|++++|...|++..+. .++.. .....+.+... -+.+...+..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~~--------~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAKL--------QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHHH--------HHHHHHHHHHHHHH
Confidence 456788888999999999999999988763 11100 00011111000 01245667778888
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 521 (579)
|.+.|++++|...++++.+ .+...|..+..+|...|++++|++.|++..+. .| +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 34667788888899999999999999998885 44 455666777777777776666
Q ss_pred HH
Q 043608 522 LH 523 (579)
Q Consensus 522 ~~ 523 (579)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00032 Score=67.73 Aligned_cols=119 Identities=13% Similarity=-0.040 Sum_probs=77.9
Q ss_pred HHHcCCHHHHHHHHhhCC-------CCC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC---CCC---CC-hhHHHH
Q 043608 446 YIKCGSLGSARKLFNFME-------NPD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL---GVS---PN-LVTLVG 507 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~---p~-~~~~~~ 507 (579)
+...|++++|..++++.. .++ ..+++.|...|...|++++|+.++++..+. -.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666655443 122 245677777888888888888887776532 112 22 347888
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|...|..+|++++|..++++..+-. -+-|+ ..+...+..++...|.+++|..++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888766421 12233 234456667777888888888888877
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0046 Score=48.10 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHH
Q 043608 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSAR 456 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 456 (579)
++++|..+|++..+.| .|+.. +-..+...+..++|.+.+++..+.| ++..+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 22222 4445555556666666666666553 44445555555554 44555555
Q ss_pred HHHhhCC-CCChhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCC
Q 043608 457 KLFNFME-NPDVVSWSSLILGYAQ----FGCGDEALKLFTRMRSLG 497 (579)
Q Consensus 457 ~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 497 (579)
+.|++.. ..++..+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5554443 2334444444444444 444455555555444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00034 Score=52.66 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+...+..+...|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666677777777777777766642 22345666667777777777777777776664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0037 Score=48.68 Aligned_cols=85 Identities=4% Similarity=-0.139 Sum_probs=39.1
Q ss_pred HHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc----cC
Q 043608 344 YAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK----MA 415 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~ 415 (579)
|...+.+++|.+.|+..-..-+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 33333344444444433222244444444444444 455555555555555543 23334444444444 45
Q ss_pred ChHHHHHHHHHHHHcC
Q 043608 416 SLEMVTQLHCYITKTG 431 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (579)
+.++|...+++..+.|
T Consensus 112 d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 112 NEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=63.92 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC----------CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHh-----CCC-CC
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN----------PD-VVSWSSLILGYAQFGCGDEALKLFTRMRS-----LGV-SP 500 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p 500 (579)
+++.|..+|...|++++|..++++..+ |+ ..+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444445555555555444444331 22 23456666667777777777777666543 221 12
Q ss_pred C-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 501 N-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 501 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+ ..+...+..++...|.+++|..++.++++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 235566777777888888888888888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=46.40 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 345556666777777777777777776642 224556667777777777777777777777653 23 3344555555
Q ss_pred HHHhc
Q 043608 547 LLARA 551 (579)
Q Consensus 547 ~~~~~ 551 (579)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0012 Score=49.55 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
+.|+..+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|...+++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788888888753 335778889999999999999999999999875 233456788899999999999999999998
Q ss_pred h
Q 043608 564 M 564 (579)
Q Consensus 564 ~ 564 (579)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0024 Score=45.22 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=39.2
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
+-..+.+.|++++|+..|++.... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555556666666666655553 22334455555555566666666666666655544 334444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.048 Score=54.00 Aligned_cols=166 Identities=8% Similarity=0.006 Sum_probs=109.4
Q ss_pred hHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC--
Q 043608 350 LCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQ----------AEELFRLFSRMLASQIKPDHITFNDVMGACAKMA-- 415 (579)
Q Consensus 350 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-- 415 (579)
-++|++.++.+ ...| +...|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34556666554 2222 44456655555555555 788888888887763 335667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhc-----------
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCG-SLGSARKLFNFMEN---PDVVSWSSLILGYAQF----------- 480 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----------- 480 (579)
+++++.+.++++.+.... +...|+.-..++.+.| ..+++.+.++++.+ .|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 668888888888877643 6677777777777777 78888888888875 3556676666665542
Q ss_pred ---CCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchH
Q 043608 481 ---GCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 481 ---~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 519 (579)
+.++++++.+++.... .| |...|..+-..+.+.++.+
T Consensus 203 ~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4457777777777764 34 4556666666666655533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.025 Score=56.00 Aligned_cols=169 Identities=12% Similarity=0.026 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc
Q 043608 381 QAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMAS----------LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (579)
..++|++.++++... .|+ ...|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 456789999999886 444 4455554455555555 89999999999987644 777888878888888
Q ss_pred C--CHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc--------
Q 043608 450 G--SLGSARKLFNFMEN---PDVVSWSSLILGYAQFG-CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV-------- 515 (579)
Q Consensus 450 ~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 515 (579)
+ +++++.+.++++.+ .+...|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 8 77999999999884 56677888777888888 8899999999998864 23566777666655442
Q ss_pred ------CchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhH
Q 043608 516 ------GLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 516 ------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 556 (579)
+.++++++.+++.... .| +...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence 5689999999888854 45 45566666666666666444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0012 Score=51.84 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=54.3
Q ss_pred HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc----------HHHHHHHHHHHhCCCCCC-hhHHHHHHHHh
Q 043608 447 IKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG----------DEALKLFTRMRSLGVSPN-LVTLVGVLTAC 512 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 512 (579)
.+.+.+++|.+.++...+ .+...|..+..++...+++ ++|+..|++.++. .|+ ...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 345566777777766652 3556666666666666554 4777777777764 443 45667777777
Q ss_pred hccC-----------chHHHHHHHHHHHHhhCCCCCc
Q 043608 513 SHVG-----------LVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 513 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
...| ++++|+..|++..+. .|+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDN 124 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCC
Confidence 6653 677777777776643 5553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0021 Score=50.46 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH----------HHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 043608 413 KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL----------GSARKLFNFMEN--P-DVVSWSSLILGYAQ 479 (579)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 479 (579)
+.+.+++|.+.++...+... .+...+..+..++...+++ ++|...|++..+ | +...|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 44566777777777776653 2666666666677666554 477777777663 3 45667777777776
Q ss_pred cC-----------CcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 480 FG-----------CGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 480 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
.| ++++|++.|++..+. .|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 53 678888888887773 56655554333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=42.77 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=54.1
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..++...|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----------------------------PDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCTHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHcCCH
Confidence 56678888888999999999999999988875 45667888899999999999
Q ss_pred HHHHHHHHHHHh
Q 043608 281 NEAMSLFSEMRD 292 (579)
Q Consensus 281 ~~a~~~~~~m~~ 292 (579)
++|.+.|++..+
T Consensus 58 ~~A~~~~~~al~ 69 (100)
T 3ma5_A 58 DDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0056 Score=58.04 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=64.1
Q ss_pred hcCCcHHHHHHHHHHHhC---CCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cchhHHHH
Q 043608 479 QFGCGDEALKLFTRMRSL---GVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REHCSCVV 545 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~ 545 (579)
..|++++|+.++++..+. -+.|+ ..+++.|..+|..+|++++|..++++...-+ -+.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888877642 12233 3478889999999999999999998876432 12222 33688899
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998877
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.045 Score=57.38 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=59.4
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChh
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQEN 118 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (579)
..++..+.+.|.++.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4555556666666666554421 1 111233445688888888777664 3467788888888888888
Q ss_pred hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 119 DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 119 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
.|.++|.++.. |..+...+...|+.+...++.+..
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888887643 334444444455555444443333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.059 Score=48.99 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=54.9
Q ss_pred CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 464 NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
..+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 3566677777766777788888888888888864 67667777777788888888888888877743 56665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.011 Score=56.23 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCC---CCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cch
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLG---VSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REH 540 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~ 540 (579)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|..+|++++|+.++++...-+ -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888887532 2232 3478888888888899999998888776432 12222 336
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhh
Q 043608 541 CSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 778888899999999999888776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.025 Score=51.35 Aligned_cols=133 Identities=8% Similarity=-0.038 Sum_probs=81.1
Q ss_pred CCCCcccHHHHHHHhhc-----chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc---cCC--------hhhHHHhhc
Q 043608 31 IRIRPSTYAGLISACSS-----LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK---CGS--------LEDARMGFD 94 (579)
Q Consensus 31 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--------~~~A~~~~~ 94 (579)
.+.+...|...+++... ..+..+|..+|++.++.. |.....+..+..+|.- .+. ...+.+-..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45677788888877542 345688999999999886 4445555544444431 110 111222111
Q ss_pred CCC--CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 95 KMP--QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 95 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.+. ..+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 2345556665555555677777777777777764 565556566666777777777777777777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.018 Score=44.70 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccC---chHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHhcCChhHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVG---LVEEGLHLYRIMENEYGIIP--TREHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
.+.+-|.+..+.|. ++..+...+.+++++.+ +.++++.+++...+. . .| ..+.+..|.-+|.+.|++++|++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444444444432 45555555555555555 445666666665554 2 12 23344445555566666666666
Q ss_pred HHHhh-cCCCC
Q 043608 560 FINQM-ACDAD 569 (579)
Q Consensus 560 ~~~~~-~~~~~ 569 (579)
+++.+ ...|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 66655 34444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0091 Score=42.99 Aligned_cols=82 Identities=16% Similarity=0.034 Sum_probs=58.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcc-cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPS-TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
....+.+.|++++|+..|+++... .+.+.. .+..+..++...|++++|...|+..++.. +.+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 345677888999999999988875 344556 77778888888899999999999888776 334444321
Q ss_pred CChhhHHHhhcCCC
Q 043608 84 GSLEDARMGFDKMP 97 (579)
Q Consensus 84 g~~~~A~~~~~~~~ 97 (579)
+.+.++...|++..
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.015 Score=41.83 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=56.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLV-TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (579)
....+.+.|++++|++.+++..+.. +.+.. .+..+..++...|++++|...|++..+. .|+..... . .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~--~-----~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQ--A-----R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHH--H-----H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHH--H-----H
Confidence 3456778888899999988888753 22456 7778888888889999999999888864 34432211 0 1
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
+.+.+|...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 5566777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.097 Score=54.84 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcH
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 484 (579)
..++..+.+.|..+.|.++.+. |. .-+......|++++|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4455555556666665554421 10 1123345567777777766554 34456777777777777777
Q ss_pred HHHHHHHHHH
Q 043608 485 EALKLFTRMR 494 (579)
Q Consensus 485 ~a~~~~~~m~ 494 (579)
.|.+.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 7777776653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.26 Score=36.76 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=88.8
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
.-.|..++..++..+.... .+..-++.+|--....-+-+...++++.+-+ -.|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3457777777777776653 2344455555444444444444444443322 1121 2344555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
..+-.++. +.......+..+...|.-++..+++.++... .+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544433 4556677788888888888888888886442 4778888888889999999999999999888888754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.023 Score=41.41 Aligned_cols=67 Identities=10% Similarity=-0.133 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCC------CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLG------VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
.+..+...+.+.|+++.|...+++..+.- -.+....+..+..++.+.|+++.|...+++..+. .|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l---~P~~ 79 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL---DPEH 79 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCC
Confidence 34566777778888888888888776531 1123556777888888888888888888887743 5554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.094 Score=41.82 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|....+ +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3445678999999887765 3678899999999999999999999998764 4455556667788877777
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+-+.....| -++.-...+...|+++++.++|.+.. ..|.. .-....-|-.+.|.++.++++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 766666554 23444455667899999999986543 22211 112223567888999998885
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.12 Score=36.47 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHhcCC---cHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGC---GDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
|...+..+..++...++ .++|..++++..+. .| +......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666654433 57888888888775 34 455677777777888888888888888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.033 Score=39.47 Aligned_cols=73 Identities=12% Similarity=-0.072 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHh
Q 043608 499 SPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVW 573 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 573 (579)
+.|...+..+..++...++ .++|..++++..+. .|+ +.....+...+.+.|++++|...|+++ ...|+ ..|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3466777777877764444 79999999999964 444 456777889999999999999999999 44555 444
Q ss_pred hh
Q 043608 574 KS 575 (579)
Q Consensus 574 ~~ 575 (579)
-.
T Consensus 79 ~~ 80 (93)
T 3bee_A 79 RV 80 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.022 Score=53.97 Aligned_cols=81 Identities=5% Similarity=-0.024 Sum_probs=41.1
Q ss_pred ccchhhHHHHHHHHHHc---CCCC----CchhHHHHHHHHHhcCChHHHHHHHHHc--------C-CCCCh-hhHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKM---GFDS----NVPVCNAILTMYAKCSVLCNALLVFKEL--------G-KNADS-VSWNSIIA 374 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-~~~~~-~~~~~l~~ 374 (579)
.|++++|..++++.++. -+.| ...+++.+..+|...|++++|+.++++. | ..|++ .+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34556666665555432 1111 1234555556666666666666555543 1 12222 23555666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043608 375 ACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m 392 (579)
.|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.029 Score=53.25 Aligned_cols=94 Identities=16% Similarity=0.037 Sum_probs=68.9
Q ss_pred HHHHhcCCCHHHHHHHhcccCC-------C----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIAR-------K----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
+..+...|++++|+.++++..+ + -..+++.+...|...|++++|+.++++..+.-
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~-------------- 359 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY-------------- 359 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--------------
Confidence 4556678899999988876532 1 23588999999999999999999999876431
Q ss_pred HHHHHHHHHhhcCCCC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043608 247 ACSNFARILFNEIDSP-DLASWNALIAGVASHSNANEAMSLFSEMRD 292 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (579)
++++... .| ...+++.|...|...|++++|..++++..+
T Consensus 360 ------~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 360 ------RIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0001111 22 245688899999999999999999987753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.43 Score=35.63 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=94.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 212 FSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 212 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
+.-.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-
T Consensus 17 ~ildG~v~qGveii~k~~~s------------------------------sni~E~NW~ICNiiD~a~C~y~v~vLd~IG 66 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS------------------------------STKSEYNWFICNLLESIDCRYMFQVLDKIG 66 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------------------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHG
T ss_pred HHHhhhHHHHHHHHHHHcCC------------------------------CCccccceeeeecchhhchhHHHHHHHHHh
Confidence 44568888888888887764 456667777766666556565666665543
Q ss_pred hCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhH
Q 043608 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSW 369 (579)
Q Consensus 292 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~ 369 (579)
. --|.. .-+++......+-. . ..+...+...++.+...|+-++-.+++.++ ..+|++...
T Consensus 67 k---iFDis----------~C~NlKrVi~C~~~---~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l 128 (172)
T 1wy6_A 67 S---YFDLD----------KCQNLKSVVECGVI---N--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASIL 128 (172)
T ss_dssp G---GSCGG----------GCSCTHHHHHHHHH---T--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHH
T ss_pred h---hcCcH----------hhhcHHHHHHHHHH---h--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHH
Confidence 2 22211 11222222222211 1 224556677788888999999999999984 555788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043608 370 NSIIAACLQHNQAEELFRLFSRMLASQIK 398 (579)
Q Consensus 370 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 398 (579)
-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 129 ~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 129 VAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 89999999999999999999999999865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.51 Score=37.63 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=37.6
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.++..++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 345555555554433 3445556666666666666666666655443 33344444445555554444444
Q ss_pred HHhcC
Q 043608 228 MLHHG 232 (579)
Q Consensus 228 m~~~~ 232 (579)
...+|
T Consensus 86 A~~~g 90 (177)
T 3mkq_B 86 AQTRE 90 (177)
T ss_dssp HHHTT
T ss_pred HHHCc
Confidence 44333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.87 E-value=4.3 Score=42.11 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=121.9
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhH--HHHHHHHHhcCChHHHHHHHHHc-CCC---------CChhhHHHHHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVC--NAILTMYAKCSVLCNALLVFKEL-GKN---------ADSVSWNSIIAA 375 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~-~~~---------~~~~~~~~l~~~ 375 (579)
+....|+.+++..++......+-..+..+- ..+.-+....|..+++..++... ... +.+..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 445667777777666654432111122222 22233344555555666655543 111 111122223333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCcHhHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHHHcC
Q 043608 376 CLQHNQ-AEELFRLFSRMLASQIKPDHITFN--DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD--IYIKCG 450 (579)
Q Consensus 376 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 450 (579)
++-.|. -+++...+..+.... .+...... .+...+...|+.+....++..+.+.. +..+...+.- ++.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 234555555555431 11111122 22233456677777777777666532 2233333333 333567
Q ss_pred CHHHHHHHHhhCCC-CChhh-HH---HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHH
Q 043608 451 SLGSARKLFNFMEN-PDVVS-WS---SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 451 ~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 525 (579)
+.+.+..+++.+.. .+... |. ++.-+|+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777766666542 33222 22 23345667777766666888877641 223333334444455566666666666
Q ss_pred HHHHHhhCCCCCcchhHHHHHHHHhcCC-hhHHHHHHHhhcCCCChh
Q 043608 526 RIMENEYGIIPTREHCSCVVDLLARAGC-VHEAEDFINQMACDADIV 571 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 571 (579)
+.+... ..|....-..+.-+....|. ..+|.+++.++...+|..
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 655432 22322222222222333333 267788888886555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.12 Score=38.52 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH---HHHHHHHHHHhhCCCC--CcchhHHHHHHHHhcCChhHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE---GLHLYRIMENEYGIIP--TREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 557 (579)
...+.+-|.+....|. |+..+-..+.+++++...... ++.+++.+.+. + .| ..+....|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444455554444442 555555566666666665444 66666665543 1 12 233444556666677777777
Q ss_pred HHHHHhh-cCCCCh
Q 043608 558 EDFINQM-ACDADI 570 (579)
Q Consensus 558 ~~~~~~~-~~~~~~ 570 (579)
.++++.+ ...|+.
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 7777766 445543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.65 E-value=4.9 Score=41.73 Aligned_cols=151 Identities=14% Similarity=0.033 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHH--HHHHHHHhccCChH
Q 043608 343 MYAKCSVLCNALLVFKELGKNADSVS--WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITF--NDVMGACAKMASLE 418 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~ 418 (579)
.+.-.|+.+....+++.+....+... .-.+.-++...|+.+.+..+.+.+... ..|-...- ..+.-+|+..|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 34456676666666665422212222 333344455778888888888888764 12222222 23345677888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc-HHHHHHHHHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG-DEALKLFTRMR 494 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~ 494 (579)
...+++..+.+.. ..++.-...+.-++...|+.+.+.++++.+.+ |.+..-.++.-+....|.. .+++.++..+.
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 8887888877542 22333333333344456777777777765542 3333333444555555544 67888888887
Q ss_pred h
Q 043608 495 S 495 (579)
Q Consensus 495 ~ 495 (579)
.
T Consensus 657 ~ 657 (963)
T 4ady_A 657 K 657 (963)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.40 E-value=2.7 Score=37.62 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=81.5
Q ss_pred HHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHH----HHHHHCCCCCCcccHHHHHHHhc
Q 043608 72 LQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLY----IQMLQSGVMPGQFTFGSIIKACS 147 (579)
Q Consensus 72 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~g~~p~~~~~~~li~~~~ 147 (579)
.|.++...|.+++++++|++++- .-...+.+.|+...|-++- +.+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677778889999999999762 2233455667776655544 66677888899888888887776
Q ss_pred CCCcch-hHHHHHHH----HHHhc--cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc
Q 043608 148 GLGSVC-LGRQLHAH----VIKSE--HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKL 215 (579)
Q Consensus 148 ~~~~~~-~a~~~~~~----~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (579)
....-+ .=..+.+. ..+.| ..-|......+...|.+.+++.+|+.-|-.-.++++..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 555322 11223333 33333 2345666777777888888888887776432222334554444444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.42 Score=34.52 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC----------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN----------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+...+..+...+.+.++++.|...++...+ +....+..+..+|.+.|+++.|...++++.+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 445556666777777777777766665542 12345666667777777777777777777663 454
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.16 E-value=2.9 Score=37.12 Aligned_cols=134 Identities=11% Similarity=0.011 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHH----HHHHHHCCCCCCcccHHHHHHHh
Q 043608 71 VLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKL----YIQMLQSGVMPGQFTFGSIIKAC 146 (579)
Q Consensus 71 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~g~~p~~~~~~~li~~~ 146 (579)
..|.++...|.+++++++|++++.. -...+.+.|+...|-++ ++.+.+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3466777788889999999987622 23345666777666554 56666778888888888888776
Q ss_pred cCCCcch-hHHHHHHHHH----Hhc--cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc
Q 043608 147 SGLGSVC-LGRQLHAHVI----KSE--HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKL 215 (579)
Q Consensus 147 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (579)
.....-+ .-.++++.++ +.| ..-|+..+..+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 6533211 2233334433 332 2235677778888888888888888876533222455555444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.28 Score=38.06 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC---ChHHHHHHHHHHHHcC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMA---SLEMVTQLHCYITKTG 431 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 431 (579)
..+.+-|.+....|. ++..+...+..++++.+ +.+++..+++...+..
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~ 65 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG 65 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 344455555544443 45555556666666665 4556666666666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.53 Score=36.05 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
++.++|.++|+.+++.+-+ -...|......-.++|++..|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 4555555555555443111 13344444444445555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.6 Score=40.67 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHh-----cCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhc-cCchHHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQ-----FGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSH-VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 468 ~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 531 (579)
..|..+...|.+ -|+.++|.+.|++.++. .| +..++....+.++. .|+.+++.+.+++....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 345555555665 37777777777777774 44 25566666676666 37777777777777754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.32 Score=38.09 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhH
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQMACDADIVV 572 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 572 (579)
.+.-..+..+|.+.|++++|+.+++.++.+--+.-
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 34455688899999999999999999965544333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=5.3 Score=37.94 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=23.8
Q ss_pred CCchhHHHHHHHHHHHc--CCHHHHHHHHhhCCCCC
Q 043608 433 AFDVFVMNGLMDIYIKC--GSLGSARKLFNFMENPD 466 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 466 (579)
-++...+..++.+|... .+++.+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 34667788888888764 45777778787766544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.51 Score=41.11 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHhhCCCCC--hhhHHHHHHH-HHh--cCC------cHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhc
Q 043608 449 CGSLGSARKLFNFMENPD--VVSWSSLILG-YAQ--FGC------GDEALKLFTRMRSLGVSPN---LVTLVGVLTACSH 514 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~--~~~~~~l~~~-~~~--~~~------~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 514 (579)
.++..+-.+.+.++...+ ...|..++.+ +.. .|+ ...|...+++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 344444555555555333 3456555543 333 233 36788888888884 566 5578888888888
Q ss_pred c-----CchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhc-CChhHHHHHHHhh---cCC--CChhHhhhh
Q 043608 515 V-----GLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARA-GCVHEAEDFINQM---ACD--ADIVVWKSL 576 (579)
Q Consensus 515 ~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~--~~~~~~~~l 576 (579)
. |+.++|.+.|++.... .|+ ..++..+.+.+++. |+.++|.+.+++. +.. |+....|++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 4 9999999999999964 563 67788889999885 9999999999998 223 666655543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.87 Score=34.05 Aligned_cols=72 Identities=8% Similarity=0.010 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChh
Q 043608 499 SPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIV 571 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 571 (579)
.|+..|--.+.+++++..+ ..+++.+++.+.+. +-.-..+.+..|.-++.+.|++++|+++.+.+ ...|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4455554455555554443 34456666666554 21112334445556666666666666666666 4455543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.58 E-value=4.7 Score=38.28 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHc----C----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 348 SVLCNALLVFKEL----G----KNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 348 ~~~~~a~~~~~~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
|+++.|++.+..+ . ..........++..|...++++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677776665443 1 112334466677777777777777666665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.25 E-value=2 Score=32.67 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhh
Q 043608 543 CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.|.-++.|.|++++|+++.+.+
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444555555555555444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=11 Score=37.53 Aligned_cols=425 Identities=8% Similarity=-0.055 Sum_probs=201.6
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcc-cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChh
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPS-TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLE 87 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 87 (579)
..+.|++..+..+...+.. .+..+. .|..+...+. ....++...++++-. +.+.....-..-+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l~-~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDLM-NQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTGG-GCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCcc-cCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHH
Confidence 4556788777777665532 222111 3333222221 112333333333211 11222344456667788889999
Q ss_pred hHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 88 DARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 88 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
..+..+.. ...+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.| .
T Consensus 90 ~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g----------------~ 151 (618)
T 1qsa_A 90 GLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG----------------K 151 (618)
T ss_dssp HHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT----------------C
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC----------------C
Confidence 99998877 43344444556667777898888888777776655 223444444544444333 3
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSA 247 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~ 247 (579)
..+...+. -+......|+...|..+...+..........++.... ++..+.......
T Consensus 152 lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~------------------- 208 (618)
T 1qsa_A 152 QDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT------------------- 208 (618)
T ss_dssp SCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-------------------
T ss_pred CCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-------------------
Confidence 22222222 2345556677777777766663222222222222221 122222222110
Q ss_pred HHHHHHHHhhcCCCCChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHH----HHHHHHhhcccchhhHHH
Q 043608 248 CSNFARILFNEIDSPDLAS---WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTV----HSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~ 320 (579)
.++... +...+.-+.+ .+.+.|...+......+. .+.... ..+.......+...++..
T Consensus 209 -------------~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 209 -------------GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred -------------CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 111111 1111222222 266777777777654331 222221 222223333442334444
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043608 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNA--DSVSWNSIIAACLQHNQAEELFRLFSRMLAS--- 395 (579)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 395 (579)
.+....... .+.....-.+....+.|+++.|...|+.+...+ .....--+..++...|+.++|..+|+.+...
T Consensus 274 ~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~f 351 (618)
T 1qsa_A 274 WRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGF 351 (618)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSH
T ss_pred HHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCh
Confidence 444433322 233333344444456688888888888875542 1222333455666778888888887776532
Q ss_pred ---------CCCC-------c---Hh-----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 396 ---------QIKP-------D---HI-----TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 396 ---------~~~p-------~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
|.++ + .. .-..-+..+...|....|...+..+.+. .+......+.......|.
T Consensus 352 Yg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 352 YPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW 428 (618)
T ss_dssp HHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Confidence 1110 0 00 0111223445556666666666655542 122333344444556666
Q ss_pred HHHHHHHHhhCCCCC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 452 LGSARKLFNFMENPD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 452 ~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
.+.+..........+ +..|...+..+.+.-.++..+-.---..++++.|
T Consensus 429 ~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 429 WDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 666665554443222 1234455555555444544433322233444444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.55 Score=36.75 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=46.8
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHhhcchhhhhhhhHHHHHHH
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRP-------STYAGLISACSSLRSLQLGRKVHDHILL 63 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 63 (579)
.-++.+...|.++.|+.+.+.+....+..++. .++..+..++...|++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34677888999999999999877654445553 2566777888999999999999999754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.86 Score=46.14 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=39.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
...+...|+++.|+++.++.... .|+ -.+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456678888888888887774 565 447888888888888888888777655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.00 E-value=8 Score=34.30 Aligned_cols=124 Identities=11% Similarity=-0.002 Sum_probs=73.8
Q ss_pred hcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCC
Q 043608 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDS 261 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 261 (579)
...|++=+|.+. |.++..-|.+.+++++|.+++..-..
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------------------- 61 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGAL------------------------------- 61 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 345666666655 45566777778888888877755322
Q ss_pred CChhhHHHHHHHHHcCCChHHHHH----HHHHHHhCCCCCChHHHHHHHHHhhcccchh-hHHHHHHHHH----HcCC--
Q 043608 262 PDLASWNALIAGVASHSNANEAMS----LFSEMRDRELLPDGLTVHSLLCACIGRLTLY-QGMQVHSYII----KMGF-- 330 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~-- 330 (579)
.+.+.|+...|-+ +++...+.+++++......++..+..-...+ .-..+++.++ +.|-
T Consensus 62 -----------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~ 130 (312)
T 2wpv_A 62 -----------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYK 130 (312)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT
T ss_pred -----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCC
Confidence 2344555544443 4555566677888777777776655432211 1223333333 2221
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
.-++.....+...|.+.|++.+|...|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2366677778888888888888887765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.98 E-value=1.2 Score=31.26 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+.-+..+-+..+....+-|++......+++|-+.+|+..|.++++-++.+ ..+...+|..+++ +-.-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH---------HHhhHH
Confidence 34466677777777888899999999999999999999999999988865 3334456665543 344555
Q ss_pred Hhhc
Q 043608 562 NQMA 565 (579)
Q Consensus 562 ~~~~ 565 (579)
++++
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.24 E-value=4.1 Score=31.28 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=39.8
Q ss_pred HcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 448 KCGSLGSARKLFNFME---NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
..++.++|.++|+.+. +.-...|-....--.++|+...|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3477888888888774 2225566666666778999999999999999876554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.72 E-value=1.5 Score=30.75 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=24.6
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
|++....+.+++|.+.+++..|+++++-.+.+ +.+...+|..++
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 66666666666666666666666666665543 223333444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.43 E-value=3.9 Score=41.45 Aligned_cols=54 Identities=15% Similarity=-0.070 Sum_probs=47.2
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+..|...|+++-|+.+-++.... .|+ ..+|..|..+|...|+++.|+-.++.+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44577899999999999998853 565 6699999999999999999999999996
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=2 Score=40.05 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCCcchhHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN----EYGIIPTREHCSCV 544 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 544 (579)
..++..+...|++++|+..++.+.... +.+...+..++.++...|+..+|++.|+.+.+ ..|+.|++.+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345566777888888888888877652 34667888888888888888888888887654 34888877665433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.04 E-value=1.6 Score=32.52 Aligned_cols=46 Identities=9% Similarity=-0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH---HHHHHHHHHH
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM---VTQLHCYITK 429 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~ 429 (579)
..+.+-|.+....|. |+..+-..+..++.+..+... +..++..+.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~ 66 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP 66 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 334444444433332 455555555555555554433 4445544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.72 E-value=13 Score=40.40 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
...++..+...+..+.+.++..-.... ...--.+..++...|++++|...|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~--~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSD--PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCC--cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344556666677777766655544443 233344556677788888888888764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.01 E-value=14 Score=32.99 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhhcccchh-hHHHHHHHH----HHcC--CCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 287 FSEMRDRELLPDGLTVHSLLCACIGRLTLY-QGMQVHSYI----IKMG--FDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 287 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
++.+.+.++++|......++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|...|-
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i- 160 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV- 160 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Confidence 355555667777766666666555443211 112222222 2223 23356677778888888888888888774
Q ss_pred cCCCCChhhHHHHHHHHHhc
Q 043608 360 LGKNADSVSWNSIIAACLQH 379 (579)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~ 379 (579)
.+..++...+..++.-+...
T Consensus 161 lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 161 LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTHHHHHHHHHHHHHHT
T ss_pred hcCCchHHHHHHHHHHHHHh
Confidence 34443445565555444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.45 E-value=1.8 Score=32.43 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHhcCCc---HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 465 PDVVSWSSLILGYAQFGCG---DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
|...+--.+.+++++..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|+++.+.+.+ +.|+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCCH
Confidence 4444555556677766543 57888888888764111244666778889999999999999998884 466643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.41 E-value=2.8 Score=39.03 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
+...++..+...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~----------------------------P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH----------------------------PYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456777888999999999988887764 56778899999999999999999
Q ss_pred HHHHHHHHh-----CCCCCChHHH
Q 043608 284 MSLFSEMRD-----RELLPDGLTV 302 (579)
Q Consensus 284 ~~~~~~m~~-----~g~~p~~~~~ 302 (579)
++.|+.... .|+.|...+-
T Consensus 225 l~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 225 LGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999988754 4788876553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.25 E-value=2.6 Score=29.35 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=58.5
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.-++|..+-+.+...+ . ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG-Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777777655 2 33333344466778999999999999999999999987765 467888888888878877
Q ss_pred CC
Q 043608 130 SG 131 (579)
Q Consensus 130 ~g 131 (579)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 76
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.02 E-value=2.8 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
.-+..+-+..+...++-|++......+++|-+.+|+..|.++|+-.+.+ ..+...+|..+++ +-.-+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq---------ElkPtl~ 137 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTLN 137 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH---------HHhhHHH
Confidence 3455666666667778888888888888888888888888888888764 3344556665543 4445556
Q ss_pred hhc
Q 043608 563 QMA 565 (579)
Q Consensus 563 ~~~ 565 (579)
+++
T Consensus 138 ELG 140 (152)
T 2y69_E 138 ELG 140 (152)
T ss_dssp HHT
T ss_pred HhC
Confidence 654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.79 E-value=3.4 Score=39.04 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN------PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
+...+.+.|.+.|+++.|.+.+.++.. .-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555666666666666666665542 112344445555566666666666655543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.29 E-value=6.7 Score=27.38 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555554443 33333334556788999999999999999999999887765 477888888888888888
Q ss_pred cC
Q 043608 231 HG 232 (579)
Q Consensus 231 ~~ 232 (579)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 87
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.20 E-value=3 Score=31.70 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHhcCC---cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc
Q 043608 465 PDVVSWSSLILGYAQFGC---GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
|+..+--.+.++++++.+ ..+++.++++....+..-.....-.|.-++.+.|++++|+++.+.+.+. .|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCc
Confidence 455555556667776664 4578888888877532212335556777889999999999999988853 6654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.03 E-value=17 Score=39.47 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=81.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------------
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---------------------- 464 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------- 464 (579)
++..+...+..+.+.++... .+.++...-.+..+|...|++++|.++|++...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555443322 122333333455566677777777777766531
Q ss_pred ----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 ----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
.-..-|..++..+.+.|.++.+.++-+...+..-+-+. ..|..+.+++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 01123556667777778888888777766654211111 14667777888888888887777666532 22
Q ss_pred CcchhHHHHHHHHhcCChhH
Q 043608 537 TREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~ 556 (579)
-...+..|+..++..|..++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34456666666666655443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.88 E-value=7.1 Score=27.30 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45556555555555443 33333334556788999999999999999999999887765 467888888888888888
Q ss_pred cC
Q 043608 231 HG 232 (579)
Q Consensus 231 ~~ 232 (579)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 77
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.51 E-value=25 Score=32.46 Aligned_cols=127 Identities=9% Similarity=-0.042 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHcC-CCC---CchhHHHHHHHHHhcC-ChHHHHHHHHHc----CCCCChhhH-
Q 043608 300 LTVHSLLCACIGRLTLYQGMQVHSYIIKMG-FDS---NVPVCNAILTMYAKCS-VLCNALLVFKEL----GKNADSVSW- 369 (579)
Q Consensus 300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~----~~~~~~~~~- 369 (579)
.....+...|.+.|+.++..+++......= ..+ .......+++.+.... ..+.-.++..+. .. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345556666677777777666666553321 011 2233445555555432 223233333222 11 11122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-----HHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 370 -----NSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-----TFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 370 -----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
..++..|...|++.+|.+++.++.+.--..|.. .+..-+..|...+++.++...+....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 145666667777777777766665531111211 23333455566667777766666655
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.20 E-value=4.3 Score=30.30 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 454 SARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 454 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
+..+-++.+. -|++....+.+++|.+.+++..|+++|+-.+.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 4444444443 277777888888888888888888888777654 344444565554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.15 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.07 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.83 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.51 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.5 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.65 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.45 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.31 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.47 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.11 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.3e-19 Score=168.65 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=133.2
Q ss_pred hcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHH
Q 043608 310 IGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQAEELFR 387 (579)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 387 (579)
...+....+...+....... +.+...+..+...+...|+++.|...++.. .. +-+...+..+...+...|++++|..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 224 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHH
Confidence 33344444444444433332 223344444555555555555555555543 11 1134455555666666666666666
Q ss_pred HHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC---C
Q 043608 388 LFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME---N 464 (579)
Q Consensus 388 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 464 (579)
.+++....+ +.+...+..+...+...|++++|...+++..+... -++.++..+..++...|++++|.+.++... .
T Consensus 225 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 302 (388)
T d1w3ba_ 225 AYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred HHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 666655542 23344455555566666666666666666555432 234555666666666666666666666554 2
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCS 542 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ 542 (579)
.+...+..+...+...|++++|++.+++..+. .|+ ..++..+..++...|++++|...|++..+ +.|+ ...+.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~ 377 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYS 377 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 34455666666677777777777777776653 343 44666677777777777777777777663 3443 44566
Q ss_pred HHHHHHHhcCC
Q 043608 543 CVVDLLARAGC 553 (579)
Q Consensus 543 ~l~~~~~~~g~ 553 (579)
.|..+|.+.||
T Consensus 378 ~lg~~~~~~~D 388 (388)
T d1w3ba_ 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHcCC
Confidence 66666666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.9e-19 Score=166.42 Aligned_cols=373 Identities=11% Similarity=0.050 Sum_probs=271.8
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 188 (579)
..+.+.|++++|.+.++++.+.. +-+...+..+...+...|++++|...+++.++.. +.+..++..+..+|...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34556677777777777776652 2234556666666777777777777777776654 234556666667777777777
Q ss_pred HHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChh
Q 043608 189 DARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLA 265 (579)
Q Consensus 189 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (579)
+|...+....+. +...+..........+....+........... .....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~ 136 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------------PDLYC 136 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------------TTCTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc----------------------------ccccc
Confidence 777766655432 22333334444444455555555444444433 34444
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 043608 266 SWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYA 345 (579)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (579)
............+....+...+....... +-+...+..+...+...|+.+.|...++...+.. +.+...+..+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence 55556666677777888887777766542 2234556666777888899999999998888765 335677888889999
Q ss_pred hcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 043608 346 KCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
..|++++|...++.. ..+.+...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.
T Consensus 215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~ 293 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999876 223366778888899999999999999999988863 33567888889999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 424 HCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
++...... +.+...+..+..++.+.|++++|...+++..+ | +..++..+...|.+.|++++|.+.|++..+. .|
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P 370 (388)
T d1w3ba_ 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SP 370 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CT
T ss_pred HHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99888764 45678888899999999999999999998874 4 4567888999999999999999999999985 56
Q ss_pred C-hhHHHHHHHHhhccCc
Q 043608 501 N-LVTLVGVLTACSHVGL 517 (579)
Q Consensus 501 ~-~~~~~~l~~~~~~~g~ 517 (579)
+ ...|..+..++.+.||
T Consensus 371 ~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 4 6688899988888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2e-11 Score=111.18 Aligned_cols=267 Identities=13% Similarity=0.054 Sum_probs=162.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
.....+.+.|++++|...|++..+. .|+ ...+..+..++...|+++.|...+....+... .+...+..+...+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 3455667777888888888777765 343 44555566666666666666666666666542 2445555555566666
Q ss_pred CChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 348 SVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 348 ~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
|++++|.+.++.. ...|+............ ...+.......+..+...+.+.++.+.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 6666666655553 11111110000000000 000000011111223344556677777777
Q ss_pred HHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-C
Q 043608 427 ITKTGL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-N 501 (579)
Q Consensus 427 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~ 501 (579)
..+... .++..++..+...+...|++++|...+++..+ .+...|..+...|...|++++|.+.+++..+. .| +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH--hhcc
Confidence 765443 34566778888888999999999999988762 35677888899999999999999999998875 45 4
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---------cchhHHHHHHHHhcCChhHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---------REHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
...+..+..+|.+.|++++|+..|++..+...-.+. ...+..+-.++...|+.+.+..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 667888999999999999999999988753111110 1133445555555666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.1e-11 Score=109.82 Aligned_cols=267 Identities=12% Similarity=0.011 Sum_probs=172.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSL 286 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 286 (579)
.....+.+.|++++|...|++..+.. +.+..+|..+..++...|++++|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------P~~~~a~~~lg~~~~~~~~~~~A~~~ 75 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD----------------------------PKHMEAWQYLGTTQAENEQELLAISA 75 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 35666889999999999999999875 45688899999999999999999999
Q ss_pred HHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCC
Q 043608 287 FSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNAD 365 (579)
Q Consensus 287 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (579)
+++..+. .| +...+..+...+...|++++|.+.++.+....... ............ ..+
T Consensus 76 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------~~~ 135 (323)
T d1fcha_ 76 LRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAG-----------------GAG 135 (323)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------------------
T ss_pred HHhhhcc--ccccccccccccccccccccccccccchhhHHHhccch-HHHHHhhhhhhh-----------------hcc
Confidence 9998875 34 45667777788999999999999999988764321 110000000000 000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
.......+..+...+.+.++...+.+..... -.++...+..+...+...|++++|...++........ +...+..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 214 (323)
T d1fcha_ 136 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGA 214 (323)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhh
Confidence 1111111222333445566666666655432 1234455666666777777777777777777655422 4566777777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----------CCCChhHHHHHHHH
Q 043608 445 IYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG----------VSPNLVTLVGVLTA 511 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----------~~p~~~~~~~l~~~ 511 (579)
+|.+.|++++|.+.|+++.+ .+..+|..+..+|.+.|++++|++.|++.++.. .......|..+-.+
T Consensus 215 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~a 294 (323)
T d1fcha_ 215 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHH
Confidence 77777888887777776652 345567777778888888888888887776521 01112345556666
Q ss_pred hhccCchHHHH
Q 043608 512 CSHVGLVEEGL 522 (579)
Q Consensus 512 ~~~~g~~~~a~ 522 (579)
+...|+.+.+.
T Consensus 295 l~~~~~~d~~~ 305 (323)
T d1fcha_ 295 LSMLGQSDAYG 305 (323)
T ss_dssp HHHHTCGGGHH
T ss_pred HHHcCCHHHHH
Confidence 66666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=5.2e-08 Score=89.36 Aligned_cols=290 Identities=10% Similarity=-0.016 Sum_probs=202.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh------HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC-----Cchh
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDG------LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS-----NVPV 336 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 336 (579)
......+...|++++|++++++..+. .|+. ..+..+...+...|++++|...++...+..... ....
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 33456678899999999999998875 3332 345566678889999999999999887642211 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc-------CCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCcHh
Q 043608 337 CNAILTMYAKCSVLCNALLVFKEL-------GKN--AD-SVSWNSIIAACLQHNQAEELFRLFSRMLASQ----IKPDHI 402 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~-------~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~ 402 (579)
+..+...+...|++..+...+... ... +. ...+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 455667788899999998888654 122 11 2245566778889999999999998877643 222334
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC--CCC----chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C--C---hhh
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTG--LAF----DVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P--D---VVS 469 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~---~~~ 469 (579)
++......+...++...+...+....... ... ....+..+...+...|+.++|...++...+ + + ...
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 55556667778889998888887766321 111 123455667778899999999999998874 1 1 234
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh----CCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh---hCCCC----C
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRS----LGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE---YGIIP----T 537 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~ 537 (579)
+..+...+...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+++..+. .|... .
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 55678889999999999999998763 344444 447788889999999999999999987542 12211 1
Q ss_pred cchhHHHHHHHHhcCChhHHHH
Q 043608 538 REHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
...+..++..+...|+.+++.+
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH
Confidence 2234456666777787777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.5e-08 Score=93.09 Aligned_cols=259 Identities=10% Similarity=0.004 Sum_probs=186.2
Q ss_pred HHHhhcccchhhHHHHHHHHHHcCCCCC----chhHHHHHHHHHhcCChHHHHHHHHHc----CCCCC----hhhHHHHH
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKMGFDSN----VPVCNAILTMYAKCSVLCNALLVFKEL----GKNAD----SVSWNSII 373 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~ 373 (579)
...+...|++++|..+++...+.....+ ...+..+...+...|++++|...|+.. ...++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3456789999999999999988653322 235667788899999999999999875 11112 23466677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC--Cc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCC----CCchhHHHHH
Q 043608 374 AACLQHNQAEELFRLFSRMLAS----QIK--PD-HITFNDVMGACAKMASLEMVTQLHCYITKTGL----AFDVFVMNGL 442 (579)
Q Consensus 374 ~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l 442 (579)
..+...|++..+...+.+.... +.. +. ...+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 7888999999999998876542 211 11 23455566778899999999999988875432 2234455566
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC------C----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN------P----DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVL 509 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~ 509 (579)
...+...++..++...+..... . ....+..+...+...|++++|...+++..+.....+ ...+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6778888888888777665431 1 123455666778899999999999998776433222 33566678
Q ss_pred HHhhccCchHHHHHHHHHHHHhh---CCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 510 TACSHVGLVEEGLHLYRIMENEY---GIIPT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.++...|++++|...+++..... +..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999876431 33333 346778899999999999999999875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.3e-08 Score=89.48 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
++|..+|++..+...+.+...+...+......|+.+.|..+++.+.+........++...+..+.+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444444444332222333334444444444555555555555444322222234444455555555555555555544
Q ss_pred CC--C-ChhhHHHHHHH-HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc
Q 043608 463 EN--P-DVVSWSSLILG-YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 463 ~~--~-~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
.+ | +...|...... +...|+.+.|..+|+++.+. .+.+...|...+..+...|+.++|..+|++..+..+..|+.
T Consensus 161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 32 1 11112111111 12234555555555555543 12234445555555555555555555555554432222221
Q ss_pred --chhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 539 --EHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 539 --~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|...+..-...|+.+.+..+.+++
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13444444444555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=9.2e-08 Score=85.40 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=134.4
Q ss_pred ChHHHHHHHHHc-C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 349 VLCNALLVFKEL-G--KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 349 ~~~~a~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
..++|..+|+.. . .+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 356677777664 1 2224456777777778888888888888888775333334467777888888888888888888
Q ss_pred HHHHcCCCCchhHHHHHHHH-HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC-CCC
Q 043608 426 YITKTGLAFDVFVMNGLMDI-YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG-VSP 500 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p 500 (579)
.+.+.... +...+...... +...|+.+.|..+|+.+.+ .+...|...+..+.+.|+++.|..+|++..+.. ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 88765533 33334333332 3345788889999888874 456778888999999999999999999988764 233
Q ss_pred C--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 501 N--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 501 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
+ ...|...+..-...|+.+.+..+++++.+.+.-.++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 3 346788888778889999999999998876443333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3e-08 Score=88.62 Aligned_cols=206 Identities=7% Similarity=-0.023 Sum_probs=103.2
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHN-QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
+...+.+.+..++|++.++.+ ...| +...|+....++...| ++++|+..+++..+.. +-+..+|..+...+...|+
T Consensus 49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc
Confidence 333344444555555555443 1111 3344555555555543 3556666665555442 2234455555555555666
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC------cHHHH
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGC------GDEAL 487 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~------~~~a~ 487 (579)
+++|.+.++++.+.... +...|..+..++.+.|++++|...++.+.+ .+...|+.+...+.+.+. +++|+
T Consensus 128 ~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai 206 (315)
T d2h6fa1 128 PSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 206 (315)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence 66666666665554322 455555566666666666666666665552 234445554444444433 45667
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 488 KLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 488 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+.+.+..+.. +.+...|..+...+... ..+++.+.++...+......+...+..+...|.
T Consensus 207 ~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 207 QYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 7777666642 22445555554444433 345666666666543111112233444555553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.7e-07 Score=81.36 Aligned_cols=211 Identities=12% Similarity=0.114 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC-ChH
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS-NAN 281 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~ 281 (579)
.+|+.+...+.+.+..++|+++++++++.. +.+..+|+....++...| +++
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln----------------------------P~~~~a~~~r~~~l~~l~~~~~ 95 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------------AANYTVWHFRRVLLKSLQKDLH 95 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC----------------------------CCChHHHHHHHHHHHHhCcCHH
Confidence 466777777888899999999999998875 567778888888888766 589
Q ss_pred HHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 282 EAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
+|+..++...+. .| +..+|......+...|++++|+..++.+.+.. +.+...|..+...+.+.|++++|++.++..
T Consensus 96 eal~~~~~al~~--~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 96 EEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999988765 34 45566677777778888888888888888775 336677777778888888888888877775
Q ss_pred -CCC-CChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 043608 361 -GKN-ADSVSWNSIIAACLQHNQ------AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGL 432 (579)
Q Consensus 361 -~~~-~~~~~~~~l~~~~~~~~~------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 432 (579)
... .+..+|+.+...+.+.+. +++|+..+.+..+.. +.+...+..+...+.. ...+++.+.++...+...
T Consensus 173 l~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 173 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred HHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCC
Confidence 222 255667666666555444 456777777666652 2344555544444433 334556666665554433
Q ss_pred CC-chhHHHHHHHHH
Q 043608 433 AF-DVFVMNGLMDIY 446 (579)
Q Consensus 433 ~~-~~~~~~~l~~~~ 446 (579)
.+ +...+..+...|
T Consensus 251 ~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 251 SHSSPYLIAFLVDIY 265 (315)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 32 233344444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=1.3e-08 Score=92.34 Aligned_cols=194 Identities=8% Similarity=-0.052 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCcHhHHH-HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 043608 365 DSVSWNSIIAACLQHN--QAEELFRLFSRMLASQIKPDHITFN-DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNG 441 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (579)
+...|..+..++...+ ++++|...++++.+.. +++...+. .....+...+.++.|...++.+.+.+. -+...++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~ 183 (334)
T d1dcea1 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 183 (334)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHH
T ss_pred cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 3334444444444433 3555555555555442 22233322 222344445555555555555554432 24445555
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 442 LMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
+..++.+.|++++|...+....+-.... ......+...+..+++...+.+..... +++...+..+...+...|+.++|
T Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 184 RSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence 5555555555555544333332211111 112222334445555555555555432 22333444444445555555555
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...+.+.... .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 262 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a 302 (334)
T d1dcea1 262 CKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTL 302 (334)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555554431 1112334455555555666666666666555
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=4.5e-08 Score=85.17 Aligned_cols=220 Identities=13% Similarity=-0.020 Sum_probs=148.2
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCC--CcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRI--RPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
..+....+.+.++.-++++.......+ ...+|..+...+.+.|++++|.+.|++.++.. +.++.+|..+..++.+.|
T Consensus 7 ~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 7 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred hcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHH
Confidence 344556677888888888876422221 22366667778899999999999999999887 678899999999999999
Q ss_pred ChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 85 SLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 85 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
++++|++.|++..+ | +..+|..+...+...|++++|.+.|+...+.. +.+......+..+....+..+....+...
T Consensus 86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999998873 3 45678888899999999999999999998863 22333333333333344444444444433
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCC----HHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDR----ILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
.... .++...++ ++..+..... .+.+...+..... ....+|..+...+...|++++|.+.|+.....
T Consensus 165 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 165 FEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhcc--chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3332 22222222 2333322222 3333333332211 13356777889999999999999999998876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.9e-07 Score=81.09 Aligned_cols=94 Identities=9% Similarity=-0.049 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK 413 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 413 (579)
++..+..+|.+.|++++|+..|+.. . .+-++.+|+.+..++.+.|++++|...|++..+.. +-+..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 4444455556666666666666554 1 11144555566666666666666666666655542 1123345555555555
Q ss_pred cCChHHHHHHHHHHHHc
Q 043608 414 MASLEMVTQLHCYITKT 430 (579)
Q Consensus 414 ~~~~~~a~~~~~~~~~~ 430 (579)
.|++++|...++...+.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 56666666666555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=2.8e-07 Score=83.41 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=124.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH---HH-------HHcCCChHH
Q 043608 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI---AG-------VASHSNANE 282 (579)
Q Consensus 213 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li---~~-------~~~~~~~~~ 282 (579)
...+..++|++++++..+.. | -+...|+..- .. +...|++++
T Consensus 40 ~~~~~~~~al~~~~~~l~~~---P-------------------------~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~ 91 (334)
T d1dcea1 40 QAGELDESVLELTSQILGAN---P-------------------------DFATLWNCRREVLQHLETEKSPEESAALVKA 91 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---T-------------------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHC---C-------------------------CcHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 33444589999999998763 2 2333343322 22 223345678
Q ss_pred HHHHHHHHHhCCCCCC-hHHHHHHHHHhhc--ccchhhHHHHHHHHHHcCCCCCchhH-HHHHHHHHhcCChHHHHHHHH
Q 043608 283 AMSLFSEMRDRELLPD-GLTVHSLLCACIG--RLTLYQGMQVHSYIIKMGFDSNVPVC-NAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 283 a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 358 (579)
|+.+++..... .|+ ...+.....++.. .++.+.+...+..+.+.... +...+ ......+...+..+.|+..++
T Consensus 92 al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~ 168 (334)
T d1dcea1 92 ELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTD 168 (334)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHH
Confidence 88888887764 343 3344444444443 34577888888888776533 33333 344456666777888888777
Q ss_pred Hc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 043608 359 EL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV 436 (579)
Q Consensus 359 ~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 436 (579)
.. ...| +..+|+.+...+.+.|++++|...++...+. .|+. ......+...+..+++...+........ ++.
T Consensus 169 ~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~ 242 (334)
T d1dcea1 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPL 242 (334)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-chh
Confidence 65 2222 4556777777777777776665444332221 1111 1111222233333444444444433221 122
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMENPDV---VSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
..+..+...+...++.++|...+.+..+.++ ..|..+...|...|++++|.+.+++..+
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233333344444444455544444443222 2233344444444455555555554444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-06 Score=71.58 Aligned_cols=117 Identities=13% Similarity=-0.005 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 445 IYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
.+...|+++.|.+.|.++..|+...|..+..+|...|++++|++.|++.++.+ +-+...|..+..+|.+.|++++|...
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666542 12344566666666666666666666
Q ss_pred HHHHHHhhCCCCC----------------cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 525 YRIMENEYGIIPT----------------REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 525 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|++.... .+.+ ..++..+..++.+.|++++|.+.+++.
T Consensus 93 ~~kAl~~--~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 93 LKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh--CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6665531 1111 122334555666666666666666655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.9e-06 Score=67.11 Aligned_cols=123 Identities=8% Similarity=-0.063 Sum_probs=93.8
Q ss_pred HHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhh
Q 043608 178 IAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFN 257 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 257 (579)
...+...|+++.|++.|+++..++..+|..+..++...|++++|++.|++.++..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------------------------- 66 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------------- 66 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------------------------
Confidence 3456788999999999999988888889999999999999999999999998875
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC----------------hHHHHHHHHHhhcccchhhHHHH
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD----------------GLTVHSLLCACIGRLTLYQGMQV 321 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~ 321 (579)
+.+...|..+..++.+.|++++|++.|++..... +++ ..++..+..++.+.|++++|.+.
T Consensus 67 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~ 142 (192)
T d1hh8a_ 67 ---KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142 (192)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5678889999999999999999999998876531 111 12233344445555666666665
Q ss_pred HHHHHHcC
Q 043608 322 HSYIIKMG 329 (579)
Q Consensus 322 ~~~~~~~~ 329 (579)
+....+..
T Consensus 143 l~~A~~~~ 150 (192)
T d1hh8a_ 143 LALATSMK 150 (192)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 55555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=3.1e-06 Score=74.38 Aligned_cols=190 Identities=7% Similarity=-0.070 Sum_probs=107.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CCchhHHHHH
Q 043608 373 IAACLQHNQAEELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGL-----AFDVFVMNGL 442 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 442 (579)
...|...+++++|.+.|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.++...+... .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44455566666666666655432 11111 23555556666666666666666665442110 1112344445
Q ss_pred HHHHHH-cCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh------hHHH
Q 043608 443 MDIYIK-CGSLGSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL------VTLV 506 (579)
Q Consensus 443 ~~~~~~-~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~ 506 (579)
...|.. .|++++|.+.+++..+ .+ ..++..+...+...|++++|.+.+++.......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555533 4777777777766542 11 234666778888888888888888887765322111 1233
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCC---c---chhHHHHHHHHh--cCChhHHHHHHHhhc
Q 043608 507 GVLTACSHVGLVEEGLHLYRIMENEYGIIPT---R---EHCSCVVDLLAR--AGCVHEAEDFINQMA 565 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~---~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 565 (579)
..+..+...|+++.|.+.+++..+. .|. . .....++.++.. .+.+++|+..++++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~---~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE---DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4445566778888888888877643 332 1 234555666544 245778888887763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=7.6e-06 Score=71.79 Aligned_cols=125 Identities=10% Similarity=-0.108 Sum_probs=58.3
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------h
Q 043608 369 WNSIIAACLQ-HNQAEELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD------V 436 (579)
Q Consensus 369 ~~~l~~~~~~-~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 436 (579)
+..+...|.. .|++++|...+++..+. +.++. ..++..+...+...|++++|...++++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3334444433 35666666665554321 11111 23345555666666666666666666554322111 0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCC--------hhhHHHHHHHHHh--cCCcHHHHHHHHHH
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMENPD--------VVSWSSLILGYAQ--FGCGDEALKLFTRM 493 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~--~~~~~~a~~~~~~m 493 (579)
..+...+.++...|+++.|...+++..+-+ ......++.++-. .+.+++|+..|+++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122333444556666666666666665421 1122334444433 23455666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.2e-06 Score=63.21 Aligned_cols=93 Identities=15% Similarity=-0.016 Sum_probs=52.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCC
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGC 553 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (579)
...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..+++..+. -+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccC
Confidence 344555666666666666665542 223445666666666666666666666666543 12344455566666666666
Q ss_pred hhHHHHHHHhh-cCCCC
Q 043608 554 VHEAEDFINQM-ACDAD 569 (579)
Q Consensus 554 ~~~A~~~~~~~-~~~~~ 569 (579)
+++|+..+++. ...|+
T Consensus 87 ~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666655 33444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.6e-06 Score=64.12 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC---chHHHHHHHHHHHHhhCCCCC-cchhHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG---LVEEGLHLYRIMENEYGIIPT-REHCSCVVDL 547 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 547 (579)
.+++.+...+++++|.+.|++..+.+ +.+..++..+..++.+.+ ++++|+.+++++... ...|+ ...+..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence 34555566666666666666666543 234455556666665433 334466666665532 11121 1245556666
Q ss_pred HHhcCChhHHHHHHHhh-cCCCChhH
Q 043608 548 LARAGCVHEAEDFINQM-ACDADIVV 572 (579)
Q Consensus 548 ~~~~g~~~~A~~~~~~~-~~~~~~~~ 572 (579)
|.+.|++++|++.+++. ...|+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 66666666666666666 44455433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0017 Score=56.73 Aligned_cols=292 Identities=9% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHH
Q 043608 134 PGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFS 213 (579)
Q Consensus 134 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 213 (579)
||..-...+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 3444444455556666666666666653322 3345555666666666666554332 3445555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043608 214 KLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDR 293 (579)
Q Consensus 214 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (579)
+.....-| .+...+. ..+......++..|-..|.+++...+++.....
T Consensus 81 ~~~e~~la-----~i~~~~~---------------------------~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~ 128 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHI---------------------------VVHADELEELINYYQDRGYFEELITMLEAALGL 128 (336)
T ss_dssp HTTCHHHH-----HHTTTTT---------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hCcHHHHH-----HHHHHHh---------------------------hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC
Confidence 54443222 1111111 234444455667777777777777777665432
Q ss_pred CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHH
Q 043608 294 ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSII 373 (579)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 373 (579)
-.++...++.++..+++.+. ++ +.+.+...+...+ ...++..|.+.+- |.-++
T Consensus 129 -~~~~~~~~~~L~~lyak~~~-~k---l~e~l~~~s~~y~---~~k~~~~c~~~~l-------------------~~elv 181 (336)
T d1b89a_ 129 -ERAHMGMFTELAILYSKFKP-QK---MREHLELFWSRVN---IPKVLRAAEQAHL-------------------WAELV 181 (336)
T ss_dssp -TTCCHHHHHHHHHHHHTTCH-HH---HHHHHHHHSTTSC---HHHHHHHHHTTTC-------------------HHHHH
T ss_pred -CccchHHHHHHHHHHHHhCh-HH---HHHHHHhccccCC---HHHHHHHHHHcCC-------------------hHHHH
Confidence 23444455556665555332 22 2222222111111 1112222222222 33444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHH
Q 043608 374 AACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLG 453 (579)
Q Consensus 374 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 453 (579)
..|.+.|+++.|..+.-+ + .++......++..+.+..+.+...++.....+. ++...+.++......-+..
T Consensus 182 ~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~ 252 (336)
T d1b89a_ 182 FLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHT 252 (336)
T ss_dssp HHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHH
T ss_pred HHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHH
Confidence 455556666665544322 2 333333444555555666655555555444432 1223344444444433333
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHH
Q 043608 454 SARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 525 (579)
+..+ .+.+.+++......++...+.| +....+.+...|...+|++.-.+.+
T Consensus 253 r~V~------------------~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 253 RAVN------------------YFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHH------------------HHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH------------------HHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3333 3344555666666666655544 3356667777777777765544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.2e-05 Score=62.98 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
...|.+.|++++|...|+++.+ .+...|..+..+|...|++++|+..|+++++.. +-+...|..+..++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 3446677777777777776652 345666777777777777777777777777652 223457777777777777777
Q ss_pred HHHHHHHHHHHh
Q 043608 520 EGLHLYRIMENE 531 (579)
Q Consensus 520 ~a~~~~~~~~~~ 531 (579)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777777754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.7e-05 Score=58.16 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.+ +.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 4556777888888888877652 455667788888888888888888888888763 345677888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCcc
Q 043608 520 EGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~ 539 (579)
+|+..|++..+ ..|+..
T Consensus 89 ~A~~~~~~a~~---~~p~~~ 105 (117)
T d1elwa_ 89 EAKRTYEEGLK---HEANNP 105 (117)
T ss_dssp HHHHHHHHHHT---TCTTCH
T ss_pred HHHHHHHHHHH---hCCCCH
Confidence 88888888874 355443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.11 E-value=1.1e-05 Score=66.41 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=96.9
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHH
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVL 509 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~ 509 (579)
|+...+......|.+.|++++|...|++.. . .+...|..+..+|.+.|++++|+..|++.++. .|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHH
Confidence 667777788899999999999999999876 3 46778889999999999999999999999874 564 66899999
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 510 TACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+|...|++++|...|++.... .|+ ...+...+..+.+.+....+.....+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999988753 232 223444555555555444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=6.2e-06 Score=60.10 Aligned_cols=89 Identities=7% Similarity=-0.152 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
.+...+.+.|++++|+..+++..+. .| +...|..+..++.+.|++++|+..+++..+. -+.+...+..+..+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHH
Confidence 3456677888888888888888775 34 4667888888888888888888888887753 23345677778888888
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=7.7e-06 Score=67.28 Aligned_cols=97 Identities=12% Similarity=-0.065 Sum_probs=86.4
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHH
Q 043608 399 PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLIL 475 (579)
Q Consensus 399 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 475 (579)
|+...+......+.+.|++++|...|.+..+... .++..|..+..+|.+.|++++|...|+.+.+ | +..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 6777788888999999999999999999998763 4788899999999999999999999999985 4 4667889999
Q ss_pred HHHhcCCcHHHHHHHHHHHhC
Q 043608 476 GYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+|.+.|++++|+..|+++.+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999998763
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=0.00053 Score=58.71 Aligned_cols=110 Identities=11% Similarity=-0.056 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHH
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEA 486 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 486 (579)
....+...+......+ +...+..|...|.. ..+...+...++...+ .+......+...|.. .+++++|
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence 3444444444433322 33444445444443 2334444444444332 344444444444443 4466677
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHh
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 531 (579)
+..|++..+.| ++..+..|...|.. ..+.++|.++|++....
T Consensus 202 ~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 202 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred hhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 77777776655 23344444444433 23566666666666544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.4e-05 Score=62.61 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLA 549 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 549 (579)
......|.+.|++++|+..|++..+.+ +-+...|..+..+|...|++++|...|++..+. .| +...|..++.+|.
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHHH
Confidence 334677899999999999999999864 335778999999999999999999999999964 44 4468889999999
Q ss_pred hcCChhHHHHHHHhh-cCCCC
Q 043608 550 RAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~-~~~~~ 569 (579)
..|++++|...+++. ...|+
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999998 34454
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=0.0014 Score=55.87 Aligned_cols=217 Identities=11% Similarity=-0.035 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 335 PVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
..+..|...+.+.+++++|++.|+.....-+..++..|...|.. ..+...+...+......+.+ .. ...+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-~a--~~~l~~~ 79 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-NG--CHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-ch--hhccccc
Confidence 34444555555666777777777665222255555556555554 45777787777777766522 22 2222222
Q ss_pred ----HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCC-CCChhhHHHHHHHHHh--
Q 043608 411 ----CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFME-NPDVVSWSSLILGYAQ-- 479 (579)
Q Consensus 411 ----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~-- 479 (579)
.....+.+.|...++...+.|.. .....+...+.. ......+...+.... ..+...+..+...|..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred cccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 22345677788888877766532 222333333332 344566666666544 4677778888888875
Q ss_pred --cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh---
Q 043608 480 --FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR--- 550 (579)
Q Consensus 480 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 550 (579)
..+...+...++...+.| +......+...+.. ..++++|..+|++..+. | ++..+..|...|.+
T Consensus 157 ~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSS
T ss_pred Ccccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-c---CHHHHHHHHHHHHcCCC
Confidence 446678888888888765 45555555555543 57899999999999875 4 34556677787765
Q ss_pred -cCChhHHHHHHHhh
Q 043608 551 -AGCVHEAEDFINQM 564 (579)
Q Consensus 551 -~g~~~~A~~~~~~~ 564 (579)
..+.++|.+++++.
T Consensus 230 ~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 230 VTRNEKQAIENFKKG 244 (265)
T ss_dssp SSCCSTTHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 44899999999887
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=6.1e-06 Score=60.11 Aligned_cols=85 Identities=7% Similarity=-0.026 Sum_probs=48.4
Q ss_pred HHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChh
Q 043608 42 ISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQEN 118 (579)
Q Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 118 (579)
...+.+.|++++|...+++.++.. +.++..|..+..++.+.|++++|+..|++..+ .+..+|..+...|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 344555566666666666666554 34555566666666666666666666655442 23445555555566666666
Q ss_pred hHHHHHHHH
Q 043608 119 DAIKLYIQM 127 (579)
Q Consensus 119 ~a~~~~~~~ 127 (579)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=4.5e-05 Score=56.91 Aligned_cols=92 Identities=13% Similarity=0.011 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----cchhHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-----REHCSCVVD 546 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~ 546 (579)
.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|...|++++|+..++++.+...-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666542 223455555666666666666666666665532100111 123444555
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
.+...|++++|.+.+++.
T Consensus 88 ~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 555666666666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.006 Score=53.14 Aligned_cols=239 Identities=9% Similarity=0.024 Sum_probs=130.8
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHH
Q 043608 259 IDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN 338 (579)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (579)
...||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.++.... + +..+|.
T Consensus 9 l~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k 73 (336)
T d1b89a_ 9 INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWK 73 (336)
T ss_dssp TTCC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHH
T ss_pred HcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHH
Confidence 3456655556677888889999999999986543 667778888888888877766543 2 566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE 418 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 418 (579)
.+...+.+......+.-+ ......+......++..|-..|.+++...+++..... -.++...++.++..+++.+. +
T Consensus 74 ~~~~~l~~~~e~~la~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 74 EVCFACVDGKEFRLAQMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHHHHHTTCHHHHHHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHHHhCcHHHHHHHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H
Confidence 888888777665543221 2223335555667888888899999988888876543 24566677788888877643 3
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CChhhHHHHHHHHHhcCCcHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------------PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a 486 (579)
+.. +.+.......+. ..++..|.+.+-++++.-++..+.+ ++.......+..+.+.++.+..
T Consensus 150 kl~---e~l~~~s~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~ 223 (336)
T d1b89a_ 150 KMR---EHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 223 (336)
T ss_dssp HHH---HHHHHHSTTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred HHH---HHHHhccccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHH
Confidence 333 333322212221 1233334444444444444444332 2233334455666677777666
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
.+......+. .| ...+.++......-+..+..+.++
T Consensus 224 ~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 224 YRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp HHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHH
Confidence 6666655542 23 334555555555556655555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=3.8e-05 Score=56.48 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC---cHHHHHHHHHHHhCCCCCCh-hHHHHHHHHhhc
Q 043608 442 LMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGC---GDEALKLFTRMRSLGVSPNL-VTLVGVLTACSH 514 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~ 514 (579)
++..+...+++++|.+.|+.... .++.++..+..++.+.++ +++|+++++++...+..|+. .++..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 44444555555555555555442 234445555555554332 33466666666554322221 245556666666
Q ss_pred cCchHHHHHHHHHHHH
Q 043608 515 VGLVEEGLHLYRIMEN 530 (579)
Q Consensus 515 ~g~~~~a~~~~~~~~~ 530 (579)
.|++++|++.|+++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 6666666666666664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00011 Score=57.86 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC-----C-------------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN-----P-------------DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
..+......+.+.|++++|...|.+..+ + ...+|+.+..+|.+.|++++|+..+++.++.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 3445566788999999999999987652 1 12456667888999999999999999999863
Q ss_pred CCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChh
Q 043608 499 SPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVH 555 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 555 (579)
+.+..++..+..+|...|++++|...|++..+. .| +......+..+..+.+...
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHH
Confidence 236778999999999999999999999999864 45 4445555555554444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.00029 Score=54.24 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--------CC-----------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--------PD-----------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS 499 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 499 (579)
+..-...+.+.|++.+|...|.++.+ ++ ..+|..+..+|.+.|++++|++.+++..+.+ +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 33444556667777777766665431 11 1233344455555555555555555555532 2
Q ss_pred CChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 500 PNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 500 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+..+|..+..++...|++++|...|++..+
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344555555555555555555555555553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00025 Score=52.69 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CC-----hhHHHHHHHH
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-PN-----LVTLVGVLTA 511 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~-----~~~~~~l~~~ 511 (579)
.+...+.+.|++++|...|.+..+ .+...|..+..+|.+.|++++|+..++++++.... +. ..+|..+...
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666552 34556666677777777777777777776652110 01 1345556666
Q ss_pred hhccCchHHHHHHHHHHHHh
Q 043608 512 CSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...+++++|++.|++....
T Consensus 89 ~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 66777777777777776643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00026 Score=55.75 Aligned_cols=109 Identities=11% Similarity=-0.116 Sum_probs=81.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--------------hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--------------VFVMNGLMDIYIKCGSLGSARKLFNFMEN--P- 465 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 465 (579)
.+......+.+.|++++|...|.+..+...... ..+|+.+..+|.+.|++++|...++...+ |
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 344555678889999999999998885422111 24566678889999999999999998873 4
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACS 513 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 513 (579)
++..|..+..+|...|++++|+..|++..+. .|+ ......+..+..
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 6778888999999999999999999999885 454 444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.00054 Score=54.13 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=81.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
......|++++|.+.|......--.+-. ......+-+...-..+.......+..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l----------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVL----------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTT----------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccccc----------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 4567778888888888877753211000 000000000000111111223466778889999999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCCcchhH
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN----EYGIIPTREHCS 542 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 542 (579)
.++++.+.. +-+...|..++.+|...|+.++|++.|+++.+ ..|+.|+..+-.
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 999999863 33677999999999999999999999999754 359999876543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.00032 Score=55.23 Aligned_cols=79 Identities=6% Similarity=-0.028 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVV 545 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 545 (579)
...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|++..+. .|+ ......+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---~p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 4456667788888999999999999988853 335668888889999999999999999988864 443 33444444
Q ss_pred HHHH
Q 043608 546 DLLA 549 (579)
Q Consensus 546 ~~~~ 549 (579)
.+..
T Consensus 153 ~~~~ 156 (169)
T d1ihga1 153 KVKQ 156 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.00045 Score=54.57 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=61.4
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
....+..+...+...|++++|+..++.+.... +-+...|..++.++.+.|+.
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~----------------------------P~~e~~~~~l~~al~~~Gr~ 117 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEH----------------------------PYREPLWTQLITAYYLSDRQ 117 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHhcCH
Confidence 34567788899999999999999999998875 57888999999999999999
Q ss_pred HHHHHHHHHHHh-----CCCCCChHH
Q 043608 281 NEAMSLFSEMRD-----RELLPDGLT 301 (579)
Q Consensus 281 ~~a~~~~~~m~~-----~g~~p~~~~ 301 (579)
++|++.|+++.. .|+.|...+
T Consensus 118 ~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 118 SDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999998743 477777544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.45 E-value=0.00056 Score=53.61 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDL 547 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 547 (579)
.|+.+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+++.. +.|+ ......+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~---l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 45556777888889999999888888753 34566888888888889999999998888874 3444 3344444444
Q ss_pred HHhcCChh-HHHHHHHhh
Q 043608 548 LARAGCVH-EAEDFINQM 564 (579)
Q Consensus 548 ~~~~g~~~-~A~~~~~~~ 564 (579)
..+.+... ...+.+.+|
T Consensus 142 ~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 44443332 334444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.40 E-value=0.00067 Score=52.15 Aligned_cols=59 Identities=7% Similarity=-0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 504 TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 504 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+|..+..+|.+.|++++|++.++...+. -+.+...|..++.+|...|++++|...|++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555555532 1223345555555555555555555555555
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.18 E-value=0.00024 Score=60.21 Aligned_cols=121 Identities=7% Similarity=-0.058 Sum_probs=89.3
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL 86 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 86 (579)
+...+.|++++|++.++...+. .|.|...+..+...++..|++++|...++...+.. +.+...+..+...+...+..
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcccc
Confidence 4567889999999999999984 67788899999999999999999999999999876 44455565555555555555
Q ss_pred hhHHHhhcCCC---CCC-eeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 87 EDARMGFDKMP---QRN-VVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 87 ~~A~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
+++..-..... +|+ ...+......+...|+.++|.+.++++.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55554433321 222 222333445577889999999999998775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.13 E-value=0.0033 Score=49.06 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|++++|.+.|+...+.... +..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3345566666777777777777777776653 334556666777777777777777777777765422 34444444443
Q ss_pred H
Q 043608 446 Y 446 (579)
Q Consensus 446 ~ 446 (579)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.13 E-value=0.0081 Score=46.65 Aligned_cols=141 Identities=8% Similarity=-0.051 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+......+.+.|++++|...|++....- |. ......+. ......+ ...+|..+..+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~-----------~~~~~~~~-~~~~~~~-------~~~~~~Nla~~~ 74 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM-----------EYGLSEKE-SKASESF-------LLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT-----------CCSCCHHH-HHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH-----------hhccchhh-hhhcchh-------HHHHHHhHHHHH
Confidence 345566677788888888888887754320 00 00000000 0000000 134566678889
Q ss_pred HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCch-HHH
Q 043608 447 IKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLV-EEG 521 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~-~~a 521 (579)
.+.|++++|...++.+.+ .+...|..+..++...|++++|...|+++.+. .|+ ......+-......+.. +..
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999998873 56778888899999999999999999999985 454 44444444443343333 234
Q ss_pred HHHHHHHHH
Q 043608 522 LHLYRIMEN 530 (579)
Q Consensus 522 ~~~~~~~~~ 530 (579)
.+.+..|.+
T Consensus 153 kk~~~~~f~ 161 (168)
T d1kt1a1 153 RRTYANMFK 161 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.12 E-value=0.0011 Score=51.16 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=68.5
Q ss_pred hHHHH--HHHHHhcCCcHHHHHHHHHHHhCCCC-CC----------hhHHHHHHHHhhccCchHHHHHHHHHHHHhh---
Q 043608 469 SWSSL--ILGYAQFGCGDEALKLFTRMRSLGVS-PN----------LVTLVGVLTACSHVGLVEEGLHLYRIMENEY--- 532 (579)
Q Consensus 469 ~~~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 532 (579)
+|..+ ...+.+.|++++|++.|++.++.... |+ ..+|+.+..+|...|++++|...+++..+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44566778888898888888753111 11 3468888899999999999999988877531
Q ss_pred -CCCCC-----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 -GIIPT-----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 -~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...++ ...+..+..+|...|++++|...+++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11121 124667889999999999999999886
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=9.4e-05 Score=70.08 Aligned_cols=130 Identities=11% Similarity=0.042 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 380 NQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+....... ....+..+...+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34444444444332221 2234455566666677777777777666554332 1245666777888888888888888
Q ss_pred hhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 043608 460 NFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH 514 (579)
Q Consensus 460 ~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 514 (579)
++..+ |+ ...|+.+...+...|+..+|+..|.+..... +|...++..|...+.+
T Consensus 176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 87763 44 4678888888888888888888888887753 4556677777665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0003 Score=66.55 Aligned_cols=225 Identities=10% Similarity=-0.050 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 317 QGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNADS-VSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
+|.+.+++..+.... ....+..+..++...|++++| |+++ ...|+. ...+.. ..+. ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE-QDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH-HHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH-HHHH-HHHHHHHHHHHHHhcc
Confidence 567777777664311 223334455556666666665 3332 111111 111111 0111 1123455666666665
Q ss_pred CCCCCcHhHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-hhhHH
Q 043608 395 SQIKPDHITFNDVMGAC--AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD-VVSWS 471 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 471 (579)
....++..-.......+ ...+.++.+...+....+.. .++...+..+...+.+.|+.++|...+....+++ ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 156 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 54344433322222221 12334444444433332221 2244556667777778888888887776655433 24566
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
.+...+...|++++|...|++..+. .|+ ..+|+.+...+...|+..+|...|.+.... -+|-+..+..|...+.+
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHH
Confidence 6777888888888888888888875 454 568888888888888888888888888742 34455567777777655
Q ss_pred cC
Q 043608 551 AG 552 (579)
Q Consensus 551 ~g 552 (579)
..
T Consensus 233 ~~ 234 (497)
T d1ya0a1 233 AL 234 (497)
T ss_dssp HT
T ss_pred hh
Confidence 44
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.03 E-value=0.00053 Score=52.07 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=90.2
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcc----------hhhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSL----------RSLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
+.|-+.+.+++|+..|+..... .|.++.++..+..++... +.+++|...|+..++.. |.+..+|..+
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~l 81 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCI 81 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhH
Confidence 3466788899999999999986 566777777777777643 45578889999998877 6677888888
Q ss_pred HHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHH
Q 043608 77 LNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGR 156 (579)
Q Consensus 77 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 156 (579)
..+|...|++..... ...+++++|.+.|++..+. .|+...|...+..+ .+|.
T Consensus 82 G~~y~~~g~~~~~~~--------------------~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLTPDET--------------------EAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAP 133 (145)
T ss_dssp HHHHHHHHHHCCCHH--------------------HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHH
T ss_pred HHHHHHcccchhhHH--------------------HHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHH
Confidence 888876654321000 0112457788888888774 67777777666655 3556
Q ss_pred HHHHHHHHhcc
Q 043608 157 QLHAHVIKSEH 167 (579)
Q Consensus 157 ~~~~~~~~~~~ 167 (579)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 67776666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.82 E-value=0.00056 Score=57.89 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=13.3
Q ss_pred HHHHhhccCchHHHHHHHHHHHHh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
....+...|+.++|.+.++++.+.
T Consensus 105 ~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 105 SFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc
Confidence 344455556666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.65 E-value=0.00086 Score=50.88 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=76.6
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLY 124 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (579)
+-+.+.+++|...|+..++.. |.++..+..+..++...+++..+.+- .+.+++|+..|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~---------------------~~~~~~Ai~~~ 64 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDA---------------------KQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHH---------------------HHHHHHHHHHH
Confidence 345677999999999999988 77888888888888877666655441 23456777777
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcCCC-----------cchhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 043608 125 IQMLQSGVMPGQFTFGSIIKACSGLG-----------SVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181 (579)
Q Consensus 125 ~~~~~~g~~p~~~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (579)
++.++.. +-+..+|..+..++...| .++.|.+.|++..+.. |+...+..-+..+
T Consensus 65 ~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 65 EEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--CCHHHHHHHHHHH
Confidence 7777642 334556666666665543 3577888888887754 5555555544444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.47 E-value=0.012 Score=44.90 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhC-----CCCCC-----hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSL-----GVSPN-----LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..|+.+..+|.+.|++++|.+.+++..+. ...++ ...+..+..+|...|++++|+..|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888887776642 11222 224667788899999999999999987753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.0047 Score=42.47 Aligned_cols=59 Identities=10% Similarity=-0.131 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCC-----CCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLG-----VSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|+..++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 45556666777777777776665421 1112 23566666667777777777777776664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.88 E-value=0.16 Score=35.53 Aligned_cols=140 Identities=15% Similarity=0.041 Sum_probs=90.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHH
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSA 455 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 455 (579)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. .| ..+++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 44567778888888777664 35556666666666666666666665554321 11 1233444444
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 043608 456 RKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
...+-.+-. +....+..+..+.++|+-+.-.++++.+.+. -+|++..+..+..+|.+.|+..++-+++.+.-+. |+
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 444433332 2334555677788888888888888887664 4778888888888899999998888888888776 54
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.012 Score=40.22 Aligned_cols=71 Identities=8% Similarity=-0.063 Sum_probs=53.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCC-----cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIR-----PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
+=..+.+.|++++|+..|++..+..+..+. ..++..+..++.+.|++++|...++++++.. |.+..+++.+
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl 86 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGNL 86 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 445778899999999999988764222211 2467888889999999999999999999886 4555565554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.31 E-value=0.27 Score=34.36 Aligned_cols=141 Identities=12% Similarity=0.071 Sum_probs=83.6
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 274 VASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 33456677777777666543 23344444444444444444444444333221 11 1123333333
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 354 LLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
...+-.++. +...++..++.+..+|+-+...++++++.+. -+|++.....+..+|-+.|+..++.+++.+.-+.|++
T Consensus 76 v~C~~~~n~--~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333322 3445666777788888888888888887664 3777777888888899999999998888888877754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.09 E-value=0.29 Score=35.47 Aligned_cols=46 Identities=2% Similarity=-0.053 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
++++|..+|++..+.|... ....+. .....+.++|...+++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 4566677777666665221 111221 223345556666666555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=1.3 Score=39.95 Aligned_cols=415 Identities=10% Similarity=-0.023 Sum_probs=231.7
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCC-ChhHHHHHHHHHHccC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQP-DVVLQNHILNMYGKCG 84 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 84 (579)
+....+.|+...+..+...+.. .+ ...|...-..-...++. ...++..-+.+..-.| ........+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d---yp--L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD---YP--LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT---ST--THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhhhcC---CC--CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 4456778888888888877642 22 22333332222222221 2223333333221111 1223344566778889
Q ss_pred ChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHH
Q 043608 85 SLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIK 164 (579)
Q Consensus 85 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (579)
++...+..+...+ ++...-.....+....|+.++|.+.+..+-..|. .. .+.+..++..+.+
T Consensus 87 ~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~----------------p~~c~~l~~~~~~ 148 (450)
T d1qsaa1 87 DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQ----------------PNACDKLFSVWRA 148 (450)
T ss_dssp CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CC----------------CTHHHHHHHHHHH
T ss_pred CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CC----------------chHHHHHHHHHHh
Confidence 9988887775432 2344444667778889999999988887766542 12 2233444444444
Q ss_pred hccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHH
Q 043608 165 SEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSV 244 (579)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~ 244 (579)
.|. .+...+-.-+......|+...|..+...+...........+..... ...+...... .
T Consensus 149 ~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~---~------------- 208 (450)
T d1qsaa1 149 SGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART---T------------- 208 (450)
T ss_dssp TTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH---S-------------
T ss_pred cCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc---C-------------
Confidence 443 3444444555666777899999999888776555555555544332 2222222211 1
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCChHH--H-HHHHHHhhcccchhhHH
Q 043608 245 FSACSNFARILFNEIDSPDLASWNALIAGVAS--HSNANEAMSLFSEMRDRELLPDGLT--V-HSLLCACIGRLTLYQGM 319 (579)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~~~~~~a~ 319 (579)
.++......+..++.+ ..+.+.+..++.............. . ..+.......+..+.+.
T Consensus 209 ----------------~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 272 (450)
T d1qsaa1 209 ----------------GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQA 272 (450)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHH
T ss_pred ----------------CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 2222222223333322 2467788888877765432222111 1 12223334456667777
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSV--SWNSIIAACLQHNQAEELFRLFSRMLASQI 397 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 397 (579)
.........+ .+.......+......+++..+...++.+...|... ..--+..++...|+.+.|...|......
T Consensus 273 ~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-- 348 (450)
T d1qsaa1 273 KWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-- 348 (450)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--
T ss_pred HHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--
Confidence 7776665543 244444555666677899999999999986553322 2345678888999999999999988642
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh----HHHHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHH
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVF----VMNGLMDIYIKCGSLGSARKLFNFME-NPDVVSWSS 472 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~ 472 (579)
++ |..++.+-.-...+.-.. ......+... .-..-+..+...|+...|...+..+. ..+......
T Consensus 349 -~~---fYG~LAa~~Lg~~~~~~~------~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~ 418 (450)
T d1qsaa1 349 -RG---FYPMVAAQRIGEEYELKI------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQ 418 (450)
T ss_dssp -CS---HHHHHHHHHTTCCCCCCC------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -CC---hHHHHHHHHcCCCCCCCc------CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHH
Confidence 33 554443321111110000 0000000000 01123455778899999998877655 456666777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
+.....+.|.++.|+....+..
T Consensus 419 la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCChhHHHHHHHHHH
Confidence 7788889999999998776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.84 E-value=0.29 Score=35.50 Aligned_cols=49 Identities=4% Similarity=-0.119 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc----cCChHHHHHHHHHHHHcC
Q 043608 380 NQAEELFRLFSRMLASQIKPDHITFNDVMGACAK----MASLEMVTQLHCYITKTG 431 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 431 (579)
.+.++|.++|++..+.|. +.....|...+.. ..+.++|.+++++..+.|
T Consensus 73 ~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 345666666666665542 2222223223322 345666666666666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.18 Score=35.64 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 517 LVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+.++++.+++++.+. + +.+ .+.+..|.-+|.+.|++++|...++++ ...|+
T Consensus 53 d~~~gI~lLe~~~~~-~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKE-A-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHH-C-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 344555555555542 1 112 133444555555666666666666555 33444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.47 E-value=0.68 Score=30.53 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHHhcC--CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 475 LGYAQFG--CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 475 ~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
..|...- +.-++.+-+..+....+-|++.....-+++|-+.+|+..|.++++..+.+ ..++...|..+++
T Consensus 12 ~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 12 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 3444444 33456666777777788899999999999999999999999999988864 3344566665543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.67 Score=32.56 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHhcC---CcHHHHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 465 PDVVSWSSLILGYAQFG---CGDEALKLFTRMRSLGVSPNL-VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
+.+.+--....+++++. +.++++.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+. .|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---eP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc---CCCcH
Confidence 33444445566666554 4568888998888753 2233 36667778889999999999999998854 66544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.94 E-value=0.9 Score=29.94 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=23.6
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGV 508 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 508 (579)
|++....+.+++|.+.+++..|+++++-.+.+ +.++...|..+
T Consensus 39 PeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yi 81 (105)
T d1v54e_ 39 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYV 81 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHH
Confidence 55566666666666666666666666655543 22333344433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.73 E-value=16 Score=32.49 Aligned_cols=353 Identities=7% Similarity=-0.050 Sum_probs=170.8
Q ss_pred HHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 176 ALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
..+..+.+.+++......+..-+ .+...-.....+....|+.++|.+.+..+-..|...|+..... + ..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l--~--------~~ 145 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKL--F--------SV 145 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHH--H--------HH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHH--H--------HH
Confidence 34556777888887777665432 2455555677788888999999988888877775444432211 1 01
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV 334 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (579)
+......+...+-.-+......|+...|..++..+ .++.. .....+..... ...+.... ... ..+.
T Consensus 146 ~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~~ 212 (450)
T d1qsaa1 146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFA---RTT--GATD 212 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CCCH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CCCh
Confidence 11111344444444455555556666665555432 12211 12222222111 11111111 111 1222
Q ss_pred hhHHHHHHHHHh--cCChHHHHHHHHHcCC--CCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH
Q 043608 335 PVCNAILTMYAK--CSVLCNALLVFKELGK--NADSVSWNSIIA----ACLQHNQAEELFRLFSRMLASQIKPDHITFND 406 (579)
Q Consensus 335 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 406 (579)
.....+..++.+ ..+.+.+...+..... ..+...+..+-. .....+..+.+..++......+ .+......
T Consensus 213 ~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w 290 (450)
T d1qsaa1 213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIER 290 (450)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred hhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHH
Confidence 222222233222 2455666666555411 112111211111 1222344555555555554443 22233333
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHH
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 486 (579)
.+......+++..+...+..+.... .....-.--+..++...|+.+.|...|..+.... .-|..|...-.. ..+.-
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg-~~~~~- 366 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVAAQRIG-EEYEL- 366 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHHHHHTT-CCCCC-
T ss_pred HHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC-ChHHHHHHHHcC-CCCCC-
Confidence 3334445566666666655543211 1112222334555666666666666666655432 123222221111 11100
Q ss_pred HHHHHHHHhCCCCC--Ch----hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHH
Q 043608 487 LKLFTRMRSLGVSP--NL----VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 487 ~~~~~~m~~~~~~p--~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (579)
....+++ .. ..-..-+..+...|....|...|..+.. .. +......+.....+.|.++.|+..
T Consensus 367 -------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~--~~--~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 367 -------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK--SK--SKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp -------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh--CC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence 0000000 00 0111234567788999999999998875 32 455666788889999999999999
Q ss_pred HHhhcCCCC
Q 043608 561 INQMACDAD 569 (579)
Q Consensus 561 ~~~~~~~~~ 569 (579)
..+.+...|
T Consensus 436 ~~~~~~~d~ 444 (450)
T d1qsaa1 436 TIAGKLWDH 444 (450)
T ss_dssp HHHTTCTTC
T ss_pred HHHHHccCc
Confidence 988865433
|