Citrus Sinensis ID: 043637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRV2 | 700 | Pentatricopeptide repeat- | yes | no | 0.959 | 0.95 | 0.544 | 0.0 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.914 | 0.745 | 0.298 | 4e-89 | |
| Q9LFI1 | 768 | Pentatricopeptide repeat- | no | no | 0.870 | 0.785 | 0.295 | 4e-88 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.839 | 0.566 | 0.288 | 8e-85 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.838 | 0.658 | 0.310 | 4e-84 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.862 | 0.686 | 0.300 | 2e-83 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.717 | 0.713 | 0.301 | 4e-83 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.897 | 0.745 | 0.293 | 1e-82 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.891 | 0.621 | 0.298 | 2e-82 | |
| O49287 | 695 | Putative pentatricopeptid | no | no | 0.864 | 0.861 | 0.299 | 5e-82 |
| >sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/670 (54%), Positives = 486/670 (72%), Gaps = 5/670 (0%)
Query: 3 GNAATILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEAR 62
G T+ + IL + ++K +S S EPVSY LY LF+ C+S +V+AR
Sbjct: 27 GTKLTVTRQIL-----EHLEGGNVSKAVSVLFASPEPVSYWLYERLFRSCSSKALVVQAR 81
Query: 63 KLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNG 122
K++S+LVTF P PP+FLLNRAIE YGKCG +DDAR LF+EMPERDGGSWNA++ A QNG
Sbjct: 82 KVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNG 141
Query: 123 FPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES 182
+F MN GV A + ++A VL+S L+L + +QLH +VK G+ GNV LE+
Sbjct: 142 VSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLET 201
Query: 183 SLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRP 242
S+VD YGKC VM+DARR+FD+I N + VSWNVIVRRYL G EAVVMFFKML ++RP
Sbjct: 202 SIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRP 261
Query: 243 LNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLL 302
LN T ++ + ACS + G IH + +K+ D VV S+ +MYVKC RLE AR +
Sbjct: 262 LNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVF 321
Query: 303 DQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD 362
DQ +++ SWTS +SGYA+SG REARELF+ MPERN++SWNAML GY + W EALD
Sbjct: 322 DQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD 381
Query: 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYR 422
F+ LMR+ ++ID VTL ILNVC+G+S+++MGK+ HGFI+R+ Y +N+ V+NALLDMY
Sbjct: 382 FLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYG 441
Query: 423 KCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482
KCG L+SA IWF QMS+ RD+VSWNA+LTG AR G+SE+A++ F MQ E +PSK+T T
Sbjct: 442 KCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLAT 501
Query: 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD 542
LLA CANI +L GK IH F+IR+ Y+I+VV RGA+V++Y+KC C +YAI VFKE+++ D
Sbjct: 502 LLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRD 561
Query: 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFD 602
+I+ NS+I G C N R +E E+F L++ EG+KPDH+TF GIL ACI EG+V+L Q+F
Sbjct: 562 LILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFS 621
Query: 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYA 662
SM KY I PQ+EHY+CMI+LYC+YG + +LE+F+ MPF+P + ML +I D C++ ++
Sbjct: 622 SMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWS 681
Query: 663 TLGEWAARRL 672
LG WAA+RL
Sbjct: 682 KLGAWAAKRL 691
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 195/654 (29%), Positives = 330/654 (50%), Gaps = 20/654 (3%)
Query: 56 KAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGG--SWNA 113
K I + + + L++F + L + I Y G L A L P D G WN+
Sbjct: 39 KTISQVKLIHQKLLSF-GILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 114 MLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRG 173
++ +Y NG + L LF M+ + + T+ V ++ E + + H L + G
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157
Query: 174 FCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFF 233
F NV + ++LV Y +C ++DAR++FD++ + VSWN I+ Y G K A+ MF
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217
Query: 234 KMLRE-DIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKC 292
+M E RP N T N L C+ L + G Q+H + + + V L +MY KC
Sbjct: 218 RMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277
Query: 293 GRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAML 348
G +++A + ++++SW ++V+GY+ GR +A LF +M E +V++W+A +
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 349 AGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGF------- 401
+GY + L EAL M + ++VTL +L+ CA + + GKE+H +
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 402 IHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNAVLTGYARRGQSE 460
+ +N + V N L+DMY KC + +AR F +S + RD V+W ++ GY++ G +
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 461 EAMTSFSEM---QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE-INVVCRG 516
+A+ SEM +TRP+ FT L ACA++++L GKQIH + +RN + +
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSN 517
Query: 517 ALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP 576
L+++Y KC + A VF + + + S++ G+ + G EAL +F M++ G K
Sbjct: 518 CLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKL 577
Query: 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636
D +T +L AC H G + +++F+ M+ +G+ P EHY C++ L R G +
Sbjct: 578 DGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRL 637
Query: 637 VNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690
+ MP P + CR +G LGE+AA ++ EL + + +N +
Sbjct: 638 IEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 188/636 (29%), Positives = 319/636 (50%), Gaps = 33/636 (5%)
Query: 45 YAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMP 104
Y L C+SS+++ + RK+ +++ L N + YGKCG+L DAR +FD MP
Sbjct: 70 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129
Query: 105 ERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQ 164
ER+ S+ +++ Y+QNG + L+L M + +Q + +++++ A ++G+ KQ
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189
Query: 165 LHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGN 224
LH ++K ++I +++L+ Y + M+DA R+F I K+ +SW+ I+ + G
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGF 249
Query: 225 GKEAVVMFFKMLREDI-RPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLG 283
EA+ +ML + P + F ++L ACS L P G QIHG+ IK + G+ +
Sbjct: 250 EFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGC 309
Query: 284 SLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS 343
SL +MY +CG L AR +F+++ + S
Sbjct: 310 SLCDMYARCGFL-------------------------------NSARRVFDQIERPDTAS 338
Query: 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIH 403
WN ++AG + EA+ MR + D ++L +L + G ++H +I
Sbjct: 339 WNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYII 398
Query: 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAM 463
+ + +++ V N+LL MY C +L F D VSWN +LT + Q E +
Sbjct: 399 KWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEML 458
Query: 464 TSFSEMQW-ETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522
F M E P T LL C ISSL+ G Q+HC+ ++ + L+++Y
Sbjct: 459 RLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMY 518
Query: 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582
KC L A R+F + DV+ +++I+G+ + G EAL +F MK GI+P+H+TF
Sbjct: 519 AKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFV 578
Query: 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF 642
G+L AC H G V+ L+ + +M+ ++GI P EH C++ L R G + E E F++ M
Sbjct: 579 GVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKL 638
Query: 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678
P V + + + C+ G L + AA + +++P+
Sbjct: 639 EPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPF 674
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (807), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 178/617 (28%), Positives = 322/617 (52%), Gaps = 35/617 (5%)
Query: 77 VFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH 136
+++ + + Y KC ++ A +F+ + E++ WNAM+ Y NG + +ELF+DM
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKS 421
Query: 137 SGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTD 196
SG + + T+ ++L + A +L + Q H +I+K+ N+ + ++LVD Y KC + D
Sbjct: 422 SGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALED 481
Query: 197 ARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256
AR++F+ + +++ V+WN I+ Y+ N EA +F +M I A+ L AC+
Sbjct: 482 ARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTH 541
Query: 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSI 316
+ Y+G Q+H + +K + D SL +MY KC
Sbjct: 542 VHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKC------------------------ 577
Query: 317 VSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQ 376
G I++AR++F+ +PE +V+S NA++AGY+++ L +EA+ M + +
Sbjct: 578 -------GIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSE 629
Query: 377 VTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSS-NIFVSNALLDMYRKCGNLRSARIWFY 435
+T I+ C + +G + HG I + +SS ++ +LL MY + A F
Sbjct: 630 ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFS 689
Query: 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETLLAACANISSLE 494
++S + V W +++G+++ G EEA+ + EM+ + P + TF T+L C+ +SSL
Sbjct: 690 ELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLR 749
Query: 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE-SSSLDVIICNSMILGF 553
+G+ IH + ++++ + L+++Y KC ++ + +VF E +V+ NS+I G+
Sbjct: 750 EGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGY 809
Query: 554 CHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613
N +AL++F M++ I PD ITF G+L AC H G V + F+ M +YGI +
Sbjct: 810 AKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEAR 869
Query: 614 LEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLN 673
++H CM+ L R+GY++E +DF+ P + + CR +G GE +A +L
Sbjct: 870 VDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLI 929
Query: 674 ELNPWAPFQFKITTNRF 690
EL P + + +N +
Sbjct: 930 ELEPQNSSAYVLLSNIY 946
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 191/615 (31%), Positives = 316/615 (51%), Gaps = 34/615 (5%)
Query: 77 VFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH 136
+F+ N ++ Y + G L AR +FDEMP RD SWN+++ Y+ +G+ LE++ ++ +
Sbjct: 141 LFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKN 200
Query: 137 SGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTD 196
S + + T ++VL + L + + LHG +K G V++ + LV Y K TD
Sbjct: 201 SWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTD 260
Query: 197 ARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256
ARR+FD++ +++VS+N ++ YL +E+V MF + L + +P T ++ L AC
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGH 319
Query: 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSI 316
L I+ ++K F + V L ++Y KCG ++I+
Sbjct: 320 LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCG---------------DMIT---- 360
Query: 317 VSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQ 376
AR++FN M ++ +SWN++++GY +S EA+ +M + D
Sbjct: 361 ------------ARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADH 408
Query: 377 VTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQ 436
+T ++++V L+++K GK +H ++ ++ VSNAL+DMY KCG + + F
Sbjct: 409 ITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSS 468
Query: 437 MSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEM-QWETRPSKFTFETLLAACANISSLEQ 495
M D V+WN V++ R G + ++M + E P TF L CA++++
Sbjct: 469 MGTG-DTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRL 527
Query: 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCH 555
GK+IHC ++R YE + AL+E+Y+KC CLE + RVF+ S DV+ MI +
Sbjct: 528 GKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGM 587
Query: 556 NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615
G +ALE F M+K GI PD + F I+ AC H G V L F+ M+ Y I P +E
Sbjct: 588 YGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIE 647
Query: 616 HYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675
HY C++ L R + + E+F+ MP P + + CR +G E +RR+ EL
Sbjct: 648 HYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIEL 707
Query: 676 NPWAPFQFKITTNRF 690
NP P + +N +
Sbjct: 708 NPDDPGYSILASNAY 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 325/632 (51%), Gaps = 34/632 (5%)
Query: 48 LFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERD 107
+ QLCA SK++ + +++++ + L ++ Y CG+L +A +FDE+
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 108 GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHG 167
WN ++ ++G ++ LF M SGV + T++ V +S + + +QLHG
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219
Query: 168 LIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKE 227
I+K GF + +SLV Y K + AR++FD++ ++ +SWN I+ Y+ G ++
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 228 AVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTE 287
+ +F +ML I T + C+ G +H + +K F +D +L +
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339
Query: 288 MYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAM 347
MY KCG L+ A+ + F EM +R+V+S+ +M
Sbjct: 340 MYSKCGDLDSAKAV-------------------------------FREMSDRSVVSYTSM 368
Query: 348 LAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDY 407
+AGY R L EA+ M + D T+ +LN CA + GK VH +I ND
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL 428
Query: 408 SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFS 467
+IFVSNAL+DMY KCG+++ A + F +M + +D +SWN ++ GY++ + EA++ F+
Sbjct: 429 GFDIFVSNALMDMYAKCGSMQEAELVFSEM-RVKDIISWNTIIGGYSKNCYANEALSLFN 487
Query: 468 EMQWETR--PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525
+ E R P + T +L ACA++S+ ++G++IH +++RN Y + +LV++Y KC
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 526 CCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL 585
L A +F + +S D++ MI G+ + G+EA+ +F M++ GI+ D I+F +L
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLL 607
Query: 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPT 645
AC H G V +FF+ MR + I P +EHY C++ + R G + + F+ MP P
Sbjct: 608 YACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPD 667
Query: 646 VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677
+ + CR + L E A ++ EL P
Sbjct: 668 ATIWGALLCGCRIHHDVKLAEKVAEKVFELEP 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 303/597 (50%), Gaps = 100/597 (16%)
Query: 163 KQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVR----- 217
+ +H ++K GF + +++ L+DAY KC + D R++FD + +N +WN +V
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 218 ---------------------RYLVAGNGK----EAVVMFFKMLREDIRPLN-FTFANAL 251
+V+G + E + +F M+ ++ LN ++FA+ L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 252 FACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNII 311
ACS L+ +G+Q+H +I K F D + +L +MY KCG + D
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVND-------------- 205
Query: 312 SWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTT 371
A+ +F+EM +RNV+SWN+++ + ++ EALD +M ++
Sbjct: 206 -----------------AQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248
Query: 372 KDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN-IFVSNALLDMYRKCGNLRSA 430
+ D+VTL +++ CA LS IK+G+EVHG + +ND N I +SNA +DMY KC ++ A
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 431 RIWFYQMSQR------------------------------RDKVSWNAVLTGYARRGQSE 460
R F M R R+ VSWNA++ GY + G++E
Sbjct: 309 RFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 461 EAMTSFSEMQWETR-PSKFTFETLLAACANISSLEQGKQIHCFVIRNCY------EINVV 513
EA++ F ++ E+ P+ ++F +L ACA+++ L G Q H V+++ + E ++
Sbjct: 369 EALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIF 428
Query: 514 CRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEG 573
+L+++Y KC C+E VF++ D + N+MI+GF N G EALE+F M + G
Sbjct: 429 VGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESG 488
Query: 574 IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633
KPDHIT G+L AC H G V+ +F SM +G+ P +HY CM+ L R G+++E
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548
Query: 634 EDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690
+ + MP P + + C+ + TLG++ A +L E+ P + + +N +
Sbjct: 549 KSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMY 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 194/662 (29%), Positives = 336/662 (50%), Gaps = 40/662 (6%)
Query: 35 KSDEPVSYSLYAHLFQLCA--SSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGN 92
+ D P Y L + Q C+ + +L+S LV V++ I+ Y K GN
Sbjct: 140 RKDSPNEYIL-SSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGN 198
Query: 93 LDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRS 152
+D AR +FD +PE+ +W M+ + G +L+LF + V + + VL +
Sbjct: 199 IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSA 258
Query: 153 SAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSW 212
+ L KQ+H I++ G + L + L+D+Y KC + A ++F+ + NKN +SW
Sbjct: 259 CSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISW 318
Query: 213 NVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK 272
++ Y KEA+ +F M + ++P + ++ L +C+ L + G Q+H IK
Sbjct: 319 TTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIK 378
Query: 273 IDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISG---RIREA 329
+ D V SL +MY KC L DAR + D +++ + +++ GY+ G + EA
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEA 438
Query: 330 RELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGL 389
+F +M R L+ L FV L+R + A L
Sbjct: 439 LNIFRDMRFR---------------LIRPSLLTFVSLLRAS----------------ASL 467
Query: 390 SEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAV 449
+ + + K++HG + + + +IF +AL+D+Y C L+ +R+ F +M + +D V WN++
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSM 526
Query: 450 LTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY 508
GY ++ ++EEA+ F E+Q RP +FTF ++ A N++S++ G++ HC +++
Sbjct: 527 FAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGL 586
Query: 509 EINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGL 568
E N AL+++Y KC E A + F ++S DV+ NS+I + ++ G++AL++
Sbjct: 587 ECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEK 646
Query: 569 MKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628
M EGI+P++ITF G+L AC H G V+ L+ F+ M ++GI P+ EHY CM+ L R G
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAG 705
Query: 629 YMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688
+ + + + +MP P + R + C K G L E AA +P F + +N
Sbjct: 706 RLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSN 765
Query: 689 RF 690
+
Sbjct: 766 IY 767
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/666 (29%), Positives = 350/666 (52%), Gaps = 48/666 (7%)
Query: 39 PVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPT---PPVFLLNRAIECYGKCGNLDD 95
P Y+ + + C+ ++ + R LE + T + +F+ + + + K G+L
Sbjct: 204 PTEYTFGSLVTTACSLTEP--DVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSY 261
Query: 96 ARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRS--- 152
AR +F++M R+ + N ++ + + +LF+DMN S + + +Y +L S
Sbjct: 262 ARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSSFPE 320
Query: 153 --SAEELELGVSKQLHGLIVKRGFCGNVI-LESSLVDAYGKCMVMTDARRMFDDIQNKNA 209
AEE+ L +++HG ++ G ++ + + LV+ Y KC + DARR+F + +K++
Sbjct: 321 YSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDS 380
Query: 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGV 269
VSWN ++ G EAV + M R DI P +FT ++L +C+ L G QIHG
Sbjct: 381 VSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGE 440
Query: 270 IIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREA 329
+K+ G D+ N+ ++++ YA +G + E
Sbjct: 441 SLKL---GIDL----------------------------NVSVSNALMTLYAETGYLNEC 469
Query: 330 RELFNEMPERNVISWNAMLAGYTRS-LLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAG 388
R++F+ MPE + +SWN+++ RS EA+ ++ + ++++T +L+ +
Sbjct: 470 RKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSS 529
Query: 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNA 448
LS ++GK++HG +N+ + NAL+ Y KCG + F +M++RRD V+WN+
Sbjct: 530 LSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNS 589
Query: 449 VLTGYARRGQSEEAMT-SFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNC 507
+++GY +A+ + +Q R F + T+L+A A++++LE+G ++H +R C
Sbjct: 590 MISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC 649
Query: 508 YEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFG 567
E +VV ALV++Y+KC L+YA+R F + NSMI G+ + +G EAL++F
Sbjct: 650 LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFE 709
Query: 568 LMKKEG-IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR 626
MK +G PDH+TF G+L AC H G ++ + F+SM YG+ P++EH+ CM + R
Sbjct: 710 TMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGR 769
Query: 627 YGYMKELEDFVNRMPFNPTVPMLRKIFDK-CRKNG-YATLGEWAARRLNELNPWAPFQFK 684
G + +LEDF+ +MP P V + R + CR NG A LG+ AA L +L P +
Sbjct: 770 AGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYV 829
Query: 685 ITTNRF 690
+ N +
Sbjct: 830 LLGNMY 835
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 205/684 (29%), Positives = 334/684 (48%), Gaps = 85/684 (12%)
Query: 31 SGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVT-FYPTPPVFLLNRAIECYGK 89
S L++ E Y L Q C+S R+ L+ + + V + N ++ Y +
Sbjct: 15 SSFLQAMEVDCRRYYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSR 74
Query: 90 CGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANV 149
G + AR LFDEMP+R+ SWN M+ Y +G G +L F DM
Sbjct: 75 SGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFF-DM--------------- 118
Query: 150 LRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNA 209
+ + G+ NV+ V + K ++ ARR+F+ + K+
Sbjct: 119 ------------------MPERDGYSWNVV-----VSGFAKAGELSVARRLFNAMPEKDV 155
Query: 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF-----TFANALFACSFLSSPYEGM 264
V+ N ++ Y++ G +EA+ +F + LNF T L AC+ L + G
Sbjct: 156 VTLNSLLHGYILNGYAEEALRLF--------KELNFSADAITLTTVLKACAELEALKCGK 207
Query: 265 QIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISG 324
QIH I+ E D + SL +Y KCG L A +L+Q E + S ++++SGYA G
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 325 RIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILN 384
R+ E+R LF+ R VI WN+M++GY + + EAL MR T++ D TL ++N
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETRE-DSRTLAAVIN 326
Query: 385 VCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSA-------------- 430
C GL ++ GK++H + +I V++ LLDMY KCG+ A
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 431 -----RIWF-----------YQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETR 474
+++F ++ + + +SWN++ G+++ G + E + F +M
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 475 PS-KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIR 533
P+ + + ++++ACA+ISSLE G+Q+ + + V +L+++Y KC +E+ R
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 534 VFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN 593
VF D + NSMI G+ N +G EA+++F M GI+P ITF +L AC + G
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIF 653
V+ + F+SM+ +G +P EH+ CM+ L R GY++E + V MPF+ M I
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 654 DKCRKNGYATLGEWAARRLNELNP 677
C NGY +G+ AA ++ EL P
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEP 650
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| 225457865 | 711 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.963 | 0.638 | 0.0 | |
| 302142721 | 912 | unnamed protein product [Vitis vinifera] | 0.988 | 0.751 | 0.638 | 0.0 | |
| 255578455 | 718 | pentatricopeptide repeat-containing prot | 0.984 | 0.949 | 0.622 | 0.0 | |
| 224066771 | 709 | predicted protein [Populus trichocarpa] | 0.985 | 0.963 | 0.59 | 0.0 | |
| 449453101 | 697 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.969 | 0.592 | 0.0 | |
| 356507622 | 698 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.967 | 0.564 | 0.0 | |
| 297818196 | 693 | pentatricopeptide repeat-containing prot | 0.936 | 0.936 | 0.556 | 0.0 | |
| 15231572 | 700 | pentatricopeptide repeat-containing prot | 0.959 | 0.95 | 0.544 | 0.0 | |
| 115458508 | 717 | Os04g0436800 [Oryza sativa Japonica Grou | 0.942 | 0.910 | 0.450 | 1e-168 | |
| 222628911 | 717 | hypothetical protein OsJ_14892 [Oryza sa | 0.942 | 0.910 | 0.450 | 1e-168 |
| >gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/703 (63%), Positives = 548/703 (77%), Gaps = 18/703 (2%)
Query: 1 MAGNAATILKNILSKSSPKP----TPSKT--------------LTKTISGHLKSDEPVSY 42
M NAA++L +L +++ KP T SK L K +S S P +
Sbjct: 1 MGVNAASVLNRLLQRNTHKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPF 60
Query: 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDE 102
SLYA LFQ+C+S+ AIVEARK+ES+L+TF P PP+FLLNRAIE YGKC LDDAR LF+E
Sbjct: 61 SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120
Query: 103 MPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVS 162
MP+RDGGSWNAM+ AY Q G + L LF MN G+ AN+IT+A+VL S A L L +S
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180
Query: 163 KQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVA 222
KQ+HGLIVK GFC NVIL SSLVD YGKC VM+DARRMFD+I+N NA+SWNVIVRRYL
Sbjct: 181 KQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEM 240
Query: 223 GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVL 282
GN KEAVVMFFKM+R +IRPLNFTF+NAL ACS +S+ EG+QIHGV I+I ++ D+VV
Sbjct: 241 GNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVS 300
Query: 283 GSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVI 342
SL +MY KCG LE A + + P +N+ISWTSIVSGYA+SG+ REAR LF+EMPER+VI
Sbjct: 301 SSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVI 360
Query: 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFI 402
SWNAMLAGYT W+EAL+FVFLMRK T+DID VT+GLILNVCAGLS+++ GK+VHGFI
Sbjct: 361 SWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFI 420
Query: 403 HRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEA 462
+R+ SN+FV NALL MY KCGNLRS R+WFYQMS RD++SWNA+LT +AR G SEEA
Sbjct: 421 YRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEA 480
Query: 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522
MT F EMQWET PSKFT TLL+ACANI +LEQGKQIH F+IRN YEI+VV RGALV++Y
Sbjct: 481 MTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMY 540
Query: 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582
+KC CLEYA++VFKE+ S D+I+ NSMILG CHN RGR+ L +FGLM++EG+KPDHITF
Sbjct: 541 SKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQ 600
Query: 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF 642
GILL CI EG L ++F+SM KY IIP+LEHYE MI+LY R+G+M ELEDF+ RMPF
Sbjct: 601 GILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPF 660
Query: 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685
PTV ML ++F+ C ++G++ LG+WAA +LNELNP PF F+I
Sbjct: 661 EPTVAMLTRVFNACSEHGHSRLGKWAAEQLNELNPSTPFHFQI 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/703 (63%), Positives = 548/703 (77%), Gaps = 18/703 (2%)
Query: 1 MAGNAATILKNILSKSSPKP----TPSKT--------------LTKTISGHLKSDEPVSY 42
M NAA++L +L +++ KP T SK L K +S S P +
Sbjct: 1 MGVNAASVLNRLLQRNTHKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPF 60
Query: 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDE 102
SLYA LFQ+C+S+ AIVEARK+ES+L+TF P PP+FLLNRAIE YGKC LDDAR LF+E
Sbjct: 61 SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120
Query: 103 MPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVS 162
MP+RDGGSWNAM+ AY Q G + L LF MN G+ AN+IT+A+VL S A L L +S
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180
Query: 163 KQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVA 222
KQ+HGLIVK GFC NVIL SSLVD YGKC VM+DARRMFD+I+N NA+SWNVIVRRYL
Sbjct: 181 KQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEM 240
Query: 223 GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVL 282
GN KEAVVMFFKM+R +IRPLNFTF+NAL ACS +S+ EG+QIHGV I+I ++ D+VV
Sbjct: 241 GNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVS 300
Query: 283 GSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVI 342
SL +MY KCG LE A + + P +N+ISWTSIVSGYA+SG+ REAR LF+EMPER+VI
Sbjct: 301 SSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVI 360
Query: 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFI 402
SWNAMLAGYT W+EAL+FVFLMRK T+DID VT+GLILNVCAGLS+++ GK+VHGFI
Sbjct: 361 SWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFI 420
Query: 403 HRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEA 462
+R+ SN+FV NALL MY KCGNLRS R+WFYQMS RD++SWNA+LT +AR G SEEA
Sbjct: 421 YRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEA 480
Query: 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522
MT F EMQWET PSKFT TLL+ACANI +LEQGKQIH F+IRN YEI+VV RGALV++Y
Sbjct: 481 MTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMY 540
Query: 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582
+KC CLEYA++VFKE+ S D+I+ NSMILG CHN RGR+ L +FGLM++EG+KPDHITF
Sbjct: 541 SKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQ 600
Query: 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF 642
GILL CI EG L ++F+SM KY IIP+LEHYE MI+LY R+G+M ELEDF+ RMPF
Sbjct: 601 GILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPF 660
Query: 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685
PTV ML ++F+ C ++G++ LG+WAA +LNELNP PF F+I
Sbjct: 661 EPTVAMLTRVFNACSEHGHSRLGKWAAEQLNELNPSTPFHFQI 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/699 (62%), Positives = 547/699 (78%), Gaps = 17/699 (2%)
Query: 4 NAATILKNILS----KSSPKPTPSKTLTKTISGHLK-------------SDEPVSYSLYA 46
+A++IL ILS K+ KPT SK LT TI HLK S+ V YSLYA
Sbjct: 2 SASSILNRILSNNTCKTQTKPTKSKALTNTIINHLKANRLQKAVSILFASNSSVPYSLYA 61
Query: 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER 106
LFQLC+S+ +IVEARK+ES+L+TF PTPP+FLLNRAIE YGKC L DAR LFDEMP+R
Sbjct: 62 SLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAIETYGKCECLKDARELFDEMPQR 121
Query: 107 DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLH 166
DGGSWNA++ AYTQ G+ + L LF DMN GV AN+IT+A+VL+S ++ L+L +S+Q+H
Sbjct: 122 DGGSWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCSDVLDLSLSRQIH 181
Query: 167 GLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGK 226
GLIVK GFCGNVIL S+LVD YGKC VM++AR MF++I+N N V+WNVIVRRYL GN +
Sbjct: 182 GLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWNVIVRRYLDVGNER 241
Query: 227 EAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLT 286
EAV MFFKM + D+RPLNFTF+NAL ACS + + EGMQIH IKI FE D+ V SL+
Sbjct: 242 EAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDEAVSSSLS 301
Query: 287 EMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNA 346
MY KCG+LE AR + DQ R++ISWTS+VS YA+SGR REARELF +MPE +V+SWNA
Sbjct: 302 NMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPEWSVVSWNA 361
Query: 347 MLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND 406
MLAGY RSL W+EALDFV LMR+TT+DID +TLGL+LNVCAG+S+++MGK+ HGFI+R+
Sbjct: 362 MLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGISDVEMGKQAHGFIYRHG 421
Query: 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSF 466
+SS I V NALLDMY KCGNLRSAR+WFYQMSQ RD +SWNA+LT YAR QSE+AM F
Sbjct: 422 FSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARHHQSEQAMMIF 481
Query: 467 SEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526
EMQWET+PS FTF TLLAACANI +L+QGK+IH F+IRN Y ++ V GALV++Y+KC
Sbjct: 482 GEMQWETKPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISGALVDMYSKCR 541
Query: 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586
CL YA+ VF + S DVI+ NS+ILG CHN RG+E L++FG M+KEG+KPDH+TFHG+LL
Sbjct: 542 CLSYALTVFNRAGSRDVILWNSIILGCCHNGRGKEVLKLFGQMEKEGVKPDHVTFHGVLL 601
Query: 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTV 646
AC++EG+VKLA+++F+SM K +IP+LEHYECMI+L+ RY M LE+FV MPF+PT
Sbjct: 602 ACMYEGHVKLAVEYFNSMSDKCCVIPRLEHYECMIELFSRYRCMSRLENFVKGMPFDPTA 661
Query: 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685
ML ++FD C+++G + +W A +LN+LNP QF+I
Sbjct: 662 SMLIRVFDACKEHGPSRFRKWVAEQLNKLNPSISSQFQI 700
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa] gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/700 (59%), Positives = 537/700 (76%), Gaps = 17/700 (2%)
Query: 4 NAATILKNILSKSS----PKPTPSKTLTKTISGHLK-------------SDEPVSYSLYA 46
+ A+IL ++LS + +P K LTK I HL+ S + +YSLYA
Sbjct: 2 SGASILSSLLSNKTLNLQTRPANVKALTKQILSHLEANRLKQAVSILFASPDCFAYSLYA 61
Query: 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER 106
HLFQ+C+SS AIVEARK+ES L+ PTPP FLLNRAI+ YGKC L+DA+ LFDEMP+R
Sbjct: 62 HLFQVCSSSLAIVEARKVESQLLGACPTPPTFLLNRAIDTYGKCRCLEDAKELFDEMPQR 121
Query: 107 DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLH 166
DGGSWNAM+ A Q P + L F DM+ GV AN++T+++ LR+ + LEL +S+Q+H
Sbjct: 122 DGGSWNAMIRACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIH 181
Query: 167 GLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGK 226
GLIVK GFCGNVI+ SSLVD YGKC M+++RR+FD+I+N N V+WN+IVRRYL G+
Sbjct: 182 GLIVKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGDEN 241
Query: 227 EAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLT 286
EAVVMFFKM R +RPL++TF+NAL ACS + + EGMQIHGV KI+FE ++VVL SL
Sbjct: 242 EAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVVLSSLI 301
Query: 287 EMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNA 346
+MYVKCG +E AR + D P R++ISWTS+VS YA+SGR+REARELF+EMPERN++S+NA
Sbjct: 302 DMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNMVSYNA 361
Query: 347 MLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND 406
+LAGY RSL W+EALDFV+LM +TT++ID +T L+LNVC+GLS++ MGK+VHGFI+R+
Sbjct: 362 LLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDVDMGKQVHGFIYRHG 421
Query: 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSF 466
+ SN + NALLDMY KCGNLRSA +WF+QM Q RD VSWN +LT YARR SE+AM+ F
Sbjct: 422 WLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTSYARRQMSEQAMSIF 481
Query: 467 SEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526
EMQWET+P KF F TLLAACAN +L+QGKQIH F+IRN Y+I+ V GAL+++Y+KC
Sbjct: 482 REMQWETKPHKFIFATLLAACANTFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSKCR 541
Query: 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586
CLEYA+ VF+E+ D+++ NSMILG CH RG+ AL +FG M++EG KPD++TF GILL
Sbjct: 542 CLEYALIVFREADKRDLVLWNSMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGILL 601
Query: 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTV 646
AC++EG+V LA Q+F+SM KY IIP+LEHYEC+I+L RYG MKELE+F+ MPF+PT
Sbjct: 602 ACVYEGHVDLARQYFNSMSSKYCIIPRLEHYECIIELLSRYGCMKELENFIKDMPFDPTA 661
Query: 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686
PML ++ D C+++ LGEWAA+RL+EL+P P F+I
Sbjct: 662 PMLTRVVDACKEHQCWRLGEWAAKRLDELSPSVPLPFEIA 701
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540-like [Cucumis sativus] gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/694 (59%), Positives = 526/694 (75%), Gaps = 18/694 (2%)
Query: 1 MAGNAATILKNILSKSS----PKPTPSKTLTKTISGHLK-------------SDEPVSYS 43
M +AA+IL +LS+ + + T + T TI +L+ S P ++
Sbjct: 1 MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
Query: 44 LYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEM 103
LY LFQLC+S++A+VEARK+ES+L TF PTPP+FLLNRAIE YGKCG L DAR LFDEM
Sbjct: 61 LYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEM 120
Query: 104 PERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSK 163
P+RDGGSWNAM+ AYTQNG+ L L+LD+N SGV A ++T A++LRS L L S+
Sbjct: 121 PQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFSR 180
Query: 164 QLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAG 223
Q+HG IVK GF GNVILESSLVD YGKC +M DAR MFD+IQN+N VSWNVIVRRYL G
Sbjct: 181 QIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVG 240
Query: 224 NGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLG 283
NGKEAV MFF+M RE + P +FTF+NAL ACS +++ EG QIHG+++K+ E ++V+
Sbjct: 241 NGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEVISS 300
Query: 284 SLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS 343
SL +MYVKCG L +A + QP RN+ISWTS+V YA SG + +ARELFNEMPERNVIS
Sbjct: 301 SLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVIS 360
Query: 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIH 403
WNAMLAGY S W+EAL+FV LMR + KDID+ TL LILNVC G S+++ GK+VHGF++
Sbjct: 361 WNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERGKQVHGFVY 420
Query: 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAM 463
R + +N+++ NALLDMY KCGNL+SA++WFYQMSQ RDKVSWNA+LT +AR G SE+AM
Sbjct: 421 RTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAM 480
Query: 464 TSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523
T FSEMQ ET P+ FTF TLL ACAN+ +LE GKQIH F++RN Y I++V GALV++Y
Sbjct: 481 TIFSEMQLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYC 540
Query: 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMK-KEGIKPDHITFH 582
KC L+YA++VF+ +S DV++ NS+ILG CHN R A+++F LM +EGIKPDH+TF
Sbjct: 541 KCRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQ 600
Query: 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF 642
GILLAC+HE V+L ++FDSM K+ +IP+LEHYECM++LY ++G M ELE F+N MPF
Sbjct: 601 GILLACLHENLVELGRKYFDSMSEKFCVIPRLEHYECMVELYGQHGNMDELEKFINNMPF 660
Query: 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676
+PTVPML +IF+ CR++G++ L EW A RLNE N
Sbjct: 661 DPTVPMLERIFNACREHGHSRLAEWVAIRLNEQN 694
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/696 (56%), Positives = 504/696 (72%), Gaps = 21/696 (3%)
Query: 1 MAGNAATILKNILSKSSPKPTP-------SKTLTKTISGHLKS-------------DEPV 40
M +AA+IL +L K + KP P + + TI +LK+ +P
Sbjct: 1 MGVSAASILNQLLRKQNLKPHPHSQTQPATNAVINTILTYLKAGRIRKATSILFAFPKPF 60
Query: 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLF 100
+SLYA F+LC+S +A+VEARK+ES+L+TF P PP FLLNRAIE Y KC L DAR LF
Sbjct: 61 PFSLYALFFRLCSSHRAVVEARKVESHLLTFSPNPPTFLLNRAIEAYAKCHCLRDARELF 120
Query: 101 DEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELG 160
DEMP+ DGGSWNA++ AY+Q GFP T LFL M SG ++T+A+VL S A EL
Sbjct: 121 DEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAASSELL 180
Query: 161 VSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYL 220
+SKQ+HGL+ K GFCGNVIL SSLVD YGKC VM DARRMF +I NAV+WNVIVRRYL
Sbjct: 181 LSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRRYL 240
Query: 221 VAGNGKEAVVMFFKMLRED-IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDD 279
AG+ KEAV MF +M +RP+NFTF+NAL ACS +S+ EG+QIHGV++K+ D+
Sbjct: 241 DAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSALREGVQIHGVVVKLGLREDN 300
Query: 280 VVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER 339
VV SL MYVKCGRLED + DQ R+++ WTSIVSGYA+SG+ EARE F+EMPER
Sbjct: 301 VVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPER 360
Query: 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVH 399
NVISWNAMLAGYT+ W +ALDFV+LM KD+D VTLGL+LNV AG+S+ +MGK+VH
Sbjct: 361 NVISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVH 420
Query: 400 GFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQS 459
G+I+R+ + S++ +SNALLDMY KCGNL S R+WF QMS RRD+VSWNA+L Y + S
Sbjct: 421 GYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLS 480
Query: 460 EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV 519
E+A+T FS+MQWET+P+++TF TLL ACAN +L GKQIH F+IR+ + I+ V R ALV
Sbjct: 481 EQALTMFSKMQWETKPTQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHIDTVTRTALV 540
Query: 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI 579
+Y KC CLEYAI V K + S DVII N++I+G HN +G+EALE+F +M+ EGIKPDH+
Sbjct: 541 YMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEAEGIKPDHV 600
Query: 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639
TF GILLACI EG V+ F SM ++ ++P++EHY+CMI+LY R+ YM ELE+F+
Sbjct: 601 TFKGILLACIEEGLVEFGTGCFKSMSSEFHVLPRMEHYDCMIELYSRHRYMDELENFMRT 660
Query: 640 MPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675
M PT+PML+++ D C+KN LGEW A ++NE
Sbjct: 661 MTMEPTLPMLKRVLDVCQKNECPRLGEWIAEKINEF 696
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818196|ref|XP_002876981.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322819|gb|EFH53240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/649 (55%), Positives = 476/649 (73%)
Query: 26 LTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85
++K +S S EPV Y LY LF+ C+S +V+ARK++S+LVTF P PP FLLNRAIE
Sbjct: 45 VSKAVSVLFASPEPVGYWLYERLFRSCSSKSLVVQARKVQSHLVTFSPLPPSFLLNRAIE 104
Query: 86 CYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQIT 145
YGKCG +DDAR LF++MPERDGGSWNA++ A QNG +F MN GV A + +
Sbjct: 105 AYGKCGCVDDARELFEQMPERDGGSWNAVITACAQNGVSDEVFRMFHRMNRDGVRATETS 164
Query: 146 YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQ 205
+A VL+S L+L + QLH +VK G+ GN+ LE+S+VD YGKC VM+DARR+FD+I
Sbjct: 165 FAGVLKSCGLVLDLRLLMQLHCAVVKYGYSGNIDLETSIVDVYGKCQVMSDARRVFDEIV 224
Query: 206 NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQ 265
N + VSWNVIVRRYL G EAVVMFFKML ++RPLN T ++ + ACS + G
Sbjct: 225 NPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKV 284
Query: 266 IHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325
IH + +KI D VV S+ +MYVKC RLE AR + DQ +++ SWTS +SGYA+SG
Sbjct: 285 IHAIAVKISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGI 344
Query: 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV 385
REARELF+ MPERN++SWNAML GY R+ W +ALDF+ LMRK +DID VTL ILNV
Sbjct: 345 TREARELFDLMPERNIVSWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNVTLVWILNV 404
Query: 386 CAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVS 445
C+G+S+++MGK+ HGFI+R+ Y N+ V+NALLDMY KCG L+SA IWF QMS+ RD+VS
Sbjct: 405 CSGISDVQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVS 464
Query: 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505
WNA+LTG AR G+SE+A++ F MQ E +PSK+T TLLA CANI +L GK IH F+IR
Sbjct: 465 WNALLTGVARVGRSEQALSFFEGMQMEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIR 524
Query: 506 NCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEV 565
N Y I+VV RGA+V++Y+KC C +YAI VFKE+++ D+I+ NS+I G C N R +E E+
Sbjct: 525 NGYNIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFEL 584
Query: 566 FGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625
F L++ EG+KPDH+TF IL ACI EG+V+L Q+F SM KY I+PQ+EHY+CM++LYC
Sbjct: 585 FMLLEDEGVKPDHVTFSAILQACIREGHVELGFQYFSSMSTKYLILPQIEHYDCMVELYC 644
Query: 626 RYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674
+YG +++LE+F+ MPF+P + ML I D C++ ++ LG WAA+RL E
Sbjct: 645 KYGCLRQLEEFLLLMPFDPPMQMLTMINDACQRYRWSKLGAWAAKRLYE 693
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540 gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/670 (54%), Positives = 486/670 (72%), Gaps = 5/670 (0%)
Query: 3 GNAATILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEAR 62
G T+ + IL + ++K +S S EPVSY LY LF+ C+S +V+AR
Sbjct: 27 GTKLTVTRQIL-----EHLEGGNVSKAVSVLFASPEPVSYWLYERLFRSCSSKALVVQAR 81
Query: 63 KLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNG 122
K++S+LVTF P PP+FLLNRAIE YGKCG +DDAR LF+EMPERDGGSWNA++ A QNG
Sbjct: 82 KVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNG 141
Query: 123 FPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES 182
+F MN GV A + ++A VL+S L+L + +QLH +VK G+ GNV LE+
Sbjct: 142 VSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLET 201
Query: 183 SLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRP 242
S+VD YGKC VM+DARR+FD+I N + VSWNVIVRRYL G EAVVMFFKML ++RP
Sbjct: 202 SIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRP 261
Query: 243 LNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLL 302
LN T ++ + ACS + G IH + +K+ D VV S+ +MYVKC RLE AR +
Sbjct: 262 LNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVF 321
Query: 303 DQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD 362
DQ +++ SWTS +SGYA+SG REARELF+ MPERN++SWNAML GY + W EALD
Sbjct: 322 DQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALD 381
Query: 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYR 422
F+ LMR+ ++ID VTL ILNVC+G+S+++MGK+ HGFI+R+ Y +N+ V+NALLDMY
Sbjct: 382 FLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYG 441
Query: 423 KCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482
KCG L+SA IWF QMS+ RD+VSWNA+LTG AR G+SE+A++ F MQ E +PSK+T T
Sbjct: 442 KCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLAT 501
Query: 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD 542
LLA CANI +L GK IH F+IR+ Y+I+VV RGA+V++Y+KC C +YAI VFKE+++ D
Sbjct: 502 LLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRD 561
Query: 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFD 602
+I+ NS+I G C N R +E E+F L++ EG+KPDH+TF GIL ACI EG+V+L Q+F
Sbjct: 562 LILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFS 621
Query: 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYA 662
SM KY I PQ+EHY+CMI+LYC+YG + +LE+F+ MPF+P + ML +I D C++ ++
Sbjct: 622 SMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWS 681
Query: 663 TLGEWAARRL 672
LG WAA+RL
Sbjct: 682 KLGAWAAKRL 691
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115458508|ref|NP_001052854.1| Os04g0436800 [Oryza sativa Japonica Group] gi|38344064|emb|CAD40816.2| OSJNBa0006B20.8 [Oryza sativa Japonica Group] gi|113564425|dbj|BAF14768.1| Os04g0436800 [Oryza sativa Japonica Group] gi|116310780|emb|CAH67572.1| H0315A08.2 [Oryza sativa Indica Group] gi|215704891|dbj|BAG94919.1| unnamed protein product [Oryza sativa Japonica Group] gi|218194892|gb|EEC77319.1| hypothetical protein OsI_15984 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/662 (45%), Positives = 420/662 (63%), Gaps = 9/662 (1%)
Query: 36 SDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTF--------YPTPPVFLLNRAIECY 87
S V ++YA L +L S +++ AR++ ++L + + FL NRA+E
Sbjct: 38 SSSQVPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLFNRAVESL 97
Query: 88 GKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYA 147
CG+L DAR LFD MP RDGGSWNA++ AY++ P + LF MN GV +T A
Sbjct: 98 AACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLA 157
Query: 148 NVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK 207
+VL AE L+L ++QLHG I KR F NVIL ++LVD YGKC +++ARR FD I
Sbjct: 158 SVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKP 217
Query: 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267
N +SWNVI+RRYL+AG G A+ MFF+M+ + PL +T + AL AC + EG +IH
Sbjct: 218 NDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIH 277
Query: 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIR 327
+++ +E V S+ +MY KCG ++ A+ L D ++I+ TSIVSG A GRI
Sbjct: 278 TFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRIT 337
Query: 328 EARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA 387
+A+ +F M E N++SWNAML GY RS+ AL MR+ TK++D VTLG +LN C
Sbjct: 338 DAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACT 397
Query: 388 GLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSA-RIWFYQMSQRRDKVSW 446
GL ++ G+EVH F ++ + F+ NALL MY KCG LRSA R+ ++M RD SW
Sbjct: 398 GLLDLGKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSYSW 457
Query: 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506
N++++GY R SE A+ + SEM +E P++ TF + LAACANI L GKQIH ++IRN
Sbjct: 458 NSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRN 517
Query: 507 CYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566
Y I+ + + AL+++Y+KC +Y++R+F+ S DVI+ NSMI G +N +G LE+F
Sbjct: 518 GYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELF 577
Query: 567 GLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR 626
M K+GI PD +TF G L++CI EG+V L +F M +Y I+P++EHYECMI+L +
Sbjct: 578 FEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGK 637
Query: 627 YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686
+GYM ELEDF+ MPF PT M +IFD CR+ G LGE AA+ +N+ NP P +F+I
Sbjct: 638 HGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGNRKLGERAAQCINDSNPLTPVRFEIA 697
Query: 687 TN 688
+
Sbjct: 698 PD 699
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222628911|gb|EEE61043.1| hypothetical protein OsJ_14892 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/662 (45%), Positives = 420/662 (63%), Gaps = 9/662 (1%)
Query: 36 SDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTF--------YPTPPVFLLNRAIECY 87
S V ++YA L +L S +++ AR++ ++L + + FL NRA+E
Sbjct: 38 SSSQVPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLFNRAVESL 97
Query: 88 GKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYA 147
CG+L DAR LFD MP RDGGSWNA++ AY++ P + LF MN GV +T A
Sbjct: 98 AACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLA 157
Query: 148 NVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK 207
+VL AE L+L ++QLHG I KR F NVIL ++LVD YGKC +++ARR FD I
Sbjct: 158 SVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKP 217
Query: 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267
N +SWNVI+RRYL+AG G A+ MFF+M+ + PL +T + AL AC + EG +IH
Sbjct: 218 NDISWNVIIRRYLLAGMGDLAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIH 277
Query: 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIR 327
+++ +E V S+ +MY KCG ++ A+ L D ++I+ TSIVSG A GRI
Sbjct: 278 TFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRIT 337
Query: 328 EARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA 387
+A+ +F M E N++SWNAML GY RS+ AL MR+ TK++D VTLG +LN C
Sbjct: 338 DAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACT 397
Query: 388 GLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSA-RIWFYQMSQRRDKVSW 446
GL ++ G+EVH F ++ + F+ NALL MY KCG LRSA R+ ++M RD SW
Sbjct: 398 GLLDLGKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSYSW 457
Query: 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506
N++++GY R SE A+ + SEM +E P++ TF + LAACANI L GKQIH ++IRN
Sbjct: 458 NSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRN 517
Query: 507 CYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566
Y I+ + + AL+++Y+KC +Y++R+F+ S DVI+ NSMI G +N +G LE+F
Sbjct: 518 GYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELF 577
Query: 567 GLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR 626
M K+GI PD +TF G L++CI EG+V L +F M +Y I+P++EHYECMI+L +
Sbjct: 578 FEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGK 637
Query: 627 YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686
+GYM ELEDF+ MPF PT M +IFD CR+ G LGE AA+ +N+ NP P +F+I
Sbjct: 638 HGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGNRKLGERAAQCINDSNPLTPVRFEIA 697
Query: 687 TN 688
+
Sbjct: 698 PD 699
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| TAIR|locus:2088827 | 700 | AT3G26540 [Arabidopsis thalian | 0.919 | 0.91 | 0.563 | 7.8e-197 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.536 | 0.446 | 0.322 | 2.2e-88 | |
| TAIR|locus:2134842 | 729 | AT4G04370 [Arabidopsis thalian | 0.523 | 0.497 | 0.314 | 3.5e-86 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.735 | 0.686 | 0.330 | 2.8e-84 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.536 | 0.349 | 0.298 | 5.1e-83 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.525 | 0.556 | 0.332 | 1.3e-82 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.702 | 0.657 | 0.340 | 4.8e-78 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.541 | 0.386 | 0.291 | 6.6e-78 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.513 | 0.431 | 0.329 | 2e-77 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.546 | 0.368 | 0.299 | 2.8e-77 |
| TAIR|locus:2088827 AT3G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 7.8e-197, P = 7.8e-197
Identities = 359/637 (56%), Positives = 474/637 (74%)
Query: 36 SDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDD 95
S EPVSY LY LF+ C+S +V+ARK++S+LVTF P PP+FLLNRAIE YGKCG +DD
Sbjct: 55 SPEPVSYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDD 114
Query: 96 ARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAE 155
AR LF+EMPERDGGSWNA++ A QNG +F MN GV A + ++A VL+S
Sbjct: 115 ARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGL 174
Query: 156 ELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVI 215
L+L + +QLH +VK G+ GNV LE+S+VD YGKC VM+DARR+FD+I N + VSWNVI
Sbjct: 175 ILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVI 234
Query: 216 VRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF 275
VRRYL G EAVVMFFKML ++RPLN T ++ + ACS + G IH + +K+
Sbjct: 235 VRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSV 294
Query: 276 EGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNE 335
D VV S+ +MYVKC RLE AR + DQ +++ SWTS +SGYA+SG REARELF+
Sbjct: 295 VADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDL 354
Query: 336 MPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMG 395
MPERN++SWNAML GY + W EALDF+ LMR+ ++ID VTL ILNVC+G+S+++MG
Sbjct: 355 MPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMG 414
Query: 396 KEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR 455
K+ HGFI+R+ Y +N+ V+NALLDMY KCG L+SA IWF QMS+ RD+VSWNA+LTG AR
Sbjct: 415 KQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVAR 474
Query: 456 RGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515
G+SE+A++ F MQ E +PSK+T TLLA CANI +L GK IH F+IR+ Y+I+VV R
Sbjct: 475 VGRSEQALSFFEGMQVEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIR 534
Query: 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575
GA+V++Y+KC C +YAI VFKE+++ D+I+ NS+I G C N R +E E+F L++ EG+K
Sbjct: 535 GAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVK 594
Query: 576 PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635
PDH+TF GIL ACI EG+V+L Q+F SM KY I PQ+EHY+CMI+LYC+YG + +LE+
Sbjct: 595 PDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEE 654
Query: 636 FVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672
F+ MPF+P + ML +I D C++ ++ LG WAA+RL
Sbjct: 655 FLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKRL 691
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 122/378 (32%), Positives = 211/378 (55%)
Query: 315 SIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTR-SLLWK--EALDFVFLMRKTT 371
S++ YA + +AR++F+ +V+ +NAM+ GY+R W+ EAL+ MR
Sbjct: 390 SLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRL 449
Query: 372 KDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSAR 431
+T +L A L+ + + K++HG + + + +IF +AL+D+Y C L+ +R
Sbjct: 450 IRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSR 509
Query: 432 IWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANI 490
+ F +M + D V WN++ GY ++ ++EEA+ F E+Q RP +FTF ++ A N+
Sbjct: 510 LVFDEMKVK-DLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNL 568
Query: 491 SSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMI 550
+S++ G++ HC +++ E N AL+++Y KC E A + F ++S DV+ NS+I
Sbjct: 569 ASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVI 628
Query: 551 LGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGI 610
+ ++ G++AL++ M EGI+P++ITF G+L AC H G V+ L+ F+ M ++GI
Sbjct: 629 SSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM-LRFGI 687
Query: 611 IPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAAR 670
P+ EHY CM+ L R G + + + + +MP P + R + C K G L E AA
Sbjct: 688 EPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAE 747
Query: 671 RLNELNPWAPFQFKITTN 688
+P F + +N
Sbjct: 748 MAILSDPKDSGSFTMLSN 765
|
|
| TAIR|locus:2134842 AT4G04370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 115/366 (31%), Positives = 197/366 (53%)
Query: 314 TSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD 373
T++++ Y G+ + + +P ++V+ W M++G R ++AL M ++ D
Sbjct: 284 TALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSD 343
Query: 374 IDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIW 433
+ + ++ CA L +G VHG++ R+ Y+ + N+L+ MY KCG+L + +
Sbjct: 344 LSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVI 403
Query: 434 FYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSKFTFETLLAACANIS 491
F +M++R D VSWNA+++GYA+ +A+ F EM+++T + FT +LL AC++
Sbjct: 404 FERMNER-DLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAG 462
Query: 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMIL 551
+L GK IHC VIR+ + ALV++Y+KC LE A R F S DV+ +I
Sbjct: 463 ALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIA 522
Query: 552 GFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGII 611
G+ + +G ALE++ G++P+H+ F +L +C H G V+ L+ F SM +G+
Sbjct: 523 GYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVE 582
Query: 612 PQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARR 671
P EH C++ L CR +++ F P++ +L I D CR NG + +
Sbjct: 583 PNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIILDACRANGKTEVEDIICED 642
Query: 672 LNELNP 677
+ EL P
Sbjct: 643 MIELKP 648
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| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 170/514 (33%), Positives = 277/514 (53%)
Query: 177 NVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236
N+ ++L+ AY K ++++ F+ + +++ V+WNV++ Y ++G AV + M+
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 237 REDIRPLN-FTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRL 295
R+ L T L S G QIHG +IK+ FE +V L MY G +
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 296 EDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSL 355
DA+ + D+RN + + S++ G G I +A +LF M E++ +SW AM+ G ++
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNG 249
Query: 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSN 415
L KEA++ M+ +DQ G +L C GL I GK++H I R ++ +I+V +
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309
Query: 416 ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TR 474
AL+DMY KC L A+ F +M Q+ + VSW A++ GY + G++EEA+ F +MQ
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368
Query: 475 PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRV 534
P +T ++ACAN+SSLE+G Q H I + V +LV +Y KC ++ + R+
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428
Query: 535 FKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNV 594
F E + D + +M+ + R E +++F M + G+KPD +T G++ AC G V
Sbjct: 429 FNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLV 488
Query: 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFD 654
+ ++F M +YGI+P + HY CMI L+ R G ++E F+N MPF P +
Sbjct: 489 EKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLS 548
Query: 655 KCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688
CR G +G+WAA L EL+P P + + ++
Sbjct: 549 ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSS 582
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| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 113/378 (29%), Positives = 208/378 (55%)
Query: 316 IVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD-FVFLMRKTTKDI 374
++ YA G++ A ++ ++V+SW M+AGYT+ +AL F ++ + +
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS- 589
Query: 375 DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWF 434
D+V L ++ CAGL +K G+++H + +SS++ NAL+ +Y +CG + + + F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 435 YQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETLLAACANISSL 493
Q ++ D ++WNA+++G+ + G +EEA+ F M E + FTF + + A + +++
Sbjct: 650 EQ-TEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708
Query: 494 EQGKQIHCFVIRNCYEINV-VCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILG 552
+QGKQ+H + + Y+ VC AL+ +Y KC + A + F E S+ + + N++I
Sbjct: 709 KQGKQVHAVITKTGYDSETEVCN-ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINA 767
Query: 553 FCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612
+ + G EAL+ F M ++P+H+T G+L AC H G V + +F+SM +YG+ P
Sbjct: 768 YSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 613 QLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672
+ EHY C++ + R G + ++F+ MP P + R + C + +GE+AA L
Sbjct: 828 KPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHL 887
Query: 673 NELNPWAPFQFKITTNRF 690
EL P + + +N +
Sbjct: 888 LELEPEDSATYVLLSNLY 905
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| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 124/373 (33%), Positives = 203/373 (54%)
Query: 309 NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVF--L 366
+++ T I+ YA S I AR +F+ ++N ++W+AM+ GY + + KEA + F L
Sbjct: 239 DLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQML 298
Query: 367 MRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGN 426
+ + V +GLIL CA ++ G+ VH + + + ++ V N ++ Y K G+
Sbjct: 299 VNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGS 358
Query: 427 LRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETL 483
L A F Q S+ +D +S+N+++TG + EE+ F EM+ RP T +
Sbjct: 359 LCDA---FRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGV 415
Query: 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDV 543
L AC+++++L G H + + + Y +N AL+++YTKC L+ A RVF D+
Sbjct: 416 LTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDI 475
Query: 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603
+ N+M+ GF + G+EAL +F M++ G+ PD +T IL AC H G V Q F+S
Sbjct: 476 VSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNS 535
Query: 604 M-RCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYA 662
M R + +IP+++HY CM L R GY+ E DFVN+MPF P + +L + C A
Sbjct: 536 MSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNA 595
Query: 663 TLGEWAARRLNEL 675
LG ++++ L
Sbjct: 596 ELGNEVSKKMQSL 608
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 168/493 (34%), Positives = 279/493 (56%)
Query: 200 MFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSS 259
+F IQ N + WN + R + ++ + A+ ++ M+ + P ++TF L +C+ +
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 260 PYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSG 319
EG QIHG ++K+ + D V SL MYV+ GRLEDA + D+ R+++S+T+++ G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 320 YAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTL 379
YA G I A++LF+E+P ++V+SWNAM++GY + +KEAL+ M KT D+ T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 380 GLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ 439
+++ CA I++G++VH +I + + SN+ + NAL+D+Y KCG L +A F ++
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 440 RRDKVSWNAVLTGYARRGQSEEAMTSFSEM--QWETRPSKFTFETLLAACANISSLEQGK 497
+ D +SWN ++ GY +EA+ F EM ET P+ T ++L ACA++ +++ G+
Sbjct: 330 K-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGR 387
Query: 498 QIHCFVIRNCYEINVVC--RGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCH 555
IH ++ + + R +L+++Y KC +E A +VF + N+MI GF
Sbjct: 388 WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM 447
Query: 556 NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615
+ R + ++F M+K GI+PD ITF G+L AC H G + L F +M Y + P+LE
Sbjct: 448 HGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLE 507
Query: 616 HYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675
HY CMI L G KE E+ +N M P + + C+ +G LGE A L ++
Sbjct: 508 HYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKI 567
Query: 676 NPWAPFQFKITTN 688
P P + + +N
Sbjct: 568 EPENPGSYVLLSN 580
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| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 6.6e-78, Sum P(3) = 6.6e-78
Identities = 110/378 (29%), Positives = 198/378 (52%)
Query: 315 SIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDI 374
+ V+ YA G + A+ +F+ + + V SWNA++ G+ +S + +LD M+ +
Sbjct: 435 AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLP 494
Query: 375 DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWF 434
D T+ +L+ C+ L +++GKEVHGFI RN ++FV ++L +Y CG L + + F
Sbjct: 495 DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 554
Query: 435 YQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQ-WETRPSKFTFETLLAACANISSL 493
M + VSWN V+TGY + G + A+ F +M + + + + AC+ + SL
Sbjct: 555 DAMEDK-SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 613
Query: 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGF 553
G++ H + +++ E + +L+++Y K + + +VF N+MI+G+
Sbjct: 614 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 673
Query: 554 CHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613
+ +EA+++F M++ G PD +TF G+L AC H G + L++ D M+ +G+ P
Sbjct: 674 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 733
Query: 614 LEHYECMIKLYCRYGYM-KELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672
L+HY C+I + R G + K L M V + + + CR + +GE A +L
Sbjct: 734 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 793
Query: 673 NELNPWAPFQFKITTNRF 690
EL P P + + +N +
Sbjct: 794 FELEPEKPENYVLLSNLY 811
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| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 118/358 (32%), Positives = 196/358 (54%)
Query: 316 IVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID 375
I+ Y+ R+ E R LF+EMPE + +S+N +++ Y+++ ++ +L F M+ D
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 376 QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFY 435
+L++ A LS ++MG+++H S + V N+L+DMY KC A + F
Sbjct: 351 NFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFK 410
Query: 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLE 494
+ QR VSW A+++GY ++G + F++M+ R + TF T+L A A+ +SL
Sbjct: 411 SLPQRTT-VSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Query: 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFC 554
GKQ+H F+IR+ NV LV++Y KC ++ A++VF+E + + N++I
Sbjct: 470 LGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Query: 555 HNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614
N G A+ F M + G++PD ++ G+L AC H G V+ ++F +M YGI P+
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589
Query: 615 EHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672
+HY CM+ L R G E E ++ MPF P M + + CR + +L E AA +L
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKL 647
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| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.8e-77, Sum P(3) = 2.8e-77
Identities = 116/387 (29%), Positives = 216/387 (55%)
Query: 307 ERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFL 366
+R++ + +S++ Y+ G I++AR++F+ +PE +V+S NA++AGY+++ L +EA+ V
Sbjct: 561 DRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAV--VLF 617
Query: 367 MRKTTKDID--QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN-IFVSNALLDMYRK 423
T+ ++ ++T I+ C + +G + HG I + +SS ++ +LL MY
Sbjct: 618 QEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMN 677
Query: 424 CGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFET 482
+ A F ++S + V W +++G+++ G EEA+ + EM+ + P + TF T
Sbjct: 678 SRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVT 737
Query: 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL- 541
+L C+ +SSL +G+ IH + ++++ + L+++Y KC ++ + +VF E
Sbjct: 738 VLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRS 797
Query: 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFF 601
+V+ NS+I G+ N +AL++F M++ I PD ITF G+L AC H G V + F
Sbjct: 798 NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIF 857
Query: 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGY 661
+ M +YGI +++H CM+ L R+GY++E +DF+ P + + CR +G
Sbjct: 858 EMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGD 917
Query: 662 ATLGEWAARRLNELNPWAPFQFKITTN 688
GE +A +L EL P + + +N
Sbjct: 918 DIRGEISAEKLIELEPQNSSAYVLLSN 944
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRV2 | PP256_ARATH | No assigned EC number | 0.5447 | 0.9595 | 0.95 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00014353001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (711 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 693 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-109 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-71 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-53 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-30 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (901), Expect = e-109
Identities = 193/639 (30%), Positives = 325/639 (50%), Gaps = 33/639 (5%)
Query: 39 PVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARG 98
PV Y LF+LC +A+ E ++ S ++ +P+ V L N + + + G L A
Sbjct: 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142
Query: 99 LFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELE 158
+F +MPERD SWN ++G Y + G+ L L+ M +GV + T+ VLR+ +
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 159 LGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRR 218
L +++H +V+ GF +V + ++L+ Y KC + AR +FD + ++ +SWN ++
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 219 YLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGD 278
Y G E + +FF M + P T + + AC L G ++HG ++K F D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 279 DVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE 338
V SL +MY+ G EA ++F+ M
Sbjct: 323 VSVCNSLIQMYLSLGSW-------------------------------GEAEKVFSRMET 351
Query: 339 RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEV 398
++ +SW AM++GY ++ L +AL+ LM + D++T+ +L+ CA L ++ +G ++
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 399 HGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQ 458
H R S + V+NAL++MY KC + A F+ + +D +SW +++ G +
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNR 470
Query: 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGAL 518
EA+ F +M +P+ T L+ACA I +L GK+IH V+R + AL
Sbjct: 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530
Query: 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH 578
+++Y +C + YA F S DV+ N ++ G+ + +G A+E+F M + G+ PD
Sbjct: 531 LDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVN 638
+TF +L AC G V L++F SM KY I P L+HY C++ L R G + E +F+N
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 639 RMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677
+MP P + + + CR + + LGE AA+ + EL+P
Sbjct: 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 3e-71
Identities = 142/434 (32%), Positives = 221/434 (50%), Gaps = 35/434 (8%)
Query: 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQP 305
T+ + AC L S ++ + FE D ++ + M+VKCG L DAR L D+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 306 DERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVF 365
ERN+ SW +I+ G +G REA LF EM W R+ FV
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREM-------WEDGSDAEPRT--------FVV 229
Query: 366 LMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCG 425
++R + GL + G+++H + + + FVS AL+DMY KCG
Sbjct: 230 MLRASA----------------GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 426 NLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPS--KFTFETL 483
++ AR F M ++ V+WN++L GYA G SEEA+ + EM+ ++ S +FTF +
Sbjct: 274 DIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIM 331
Query: 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDV 543
+ + ++ LE KQ H +IR + +++V ALV++Y+K +E A VF ++
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603
I N++I G+ ++ RG +A+E+F M EG+ P+H+TF +L AC + G + + F S
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 604 MRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYAT 663
M + I P+ HY CMI+L R G + E + R PF PTV M + CR +
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
Query: 664 LGEWAARRLNELNP 677
LG AA +L + P
Sbjct: 512 LGRLAAEKLYGMGP 525
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 4e-53
Identities = 97/300 (32%), Positives = 157/300 (52%)
Query: 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDE 102
S Y L + C + K+I + + ++ + P +++NR + + KCG L DAR LFDE
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 103 MPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVS 162
MPER+ SW ++G G LF +M G A T+ +LR+SA
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 163 KQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVA 222
+QLH ++K G G+ + +L+D Y KC + DAR +FD + K V+WN ++ Y +
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 223 GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVL 282
G +EA+ ++++M + FTF+ + S L+ Q H +I+ F D V
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 283 GSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVI 342
+L ++Y K GR+EDAR + D+ +N+ISW ++++GY GR +A E+F M V
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 7e-36
Identities = 99/355 (27%), Positives = 169/355 (47%), Gaps = 41/355 (11%)
Query: 77 VFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH 136
F+ I+ Y KCG+++DAR +FD MPE+ +WN+ML Y +G+ L L+ +M
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 137 SGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTD 196
SGVS +Q T++ ++R + L +KQ H +++ GF +++ ++LVD Y K M D
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378
Query: 197 ARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256
AR +FD + KN +SWN ++ Y G G +AV MF +M+ E + P + TF L AC +
Sbjct: 379 ARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 257 LSSPYEGMQIHGVIIKIDFEGDDVVLG---------SLTEMYVKCGRLEDARGLL-DQPD 306
+G +I F+ + E+ + G L++A ++ P
Sbjct: 439 SGLSEQGWEI--------FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490
Query: 307 ERNIISWTSIVSGYAISGRIREAR----ELFNEMPERNVISWNAMLAGYTRSLLWKEALD 362
+ + W ++++ I + R +L+ PE+ + ++ +L Y S EA
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAK 549
Query: 363 FV-FLMRKTTKDIDQVTLGL-ILNVCAGLSEIKMGKEVHGFIHRND---YSSNIF 412
V L RK GL + C + I++ K+ H F + S I+
Sbjct: 550 VVETLKRK----------GLSMHPAC---TWIEVKKQDHSFFSGDRLHPQSREIY 591
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-30
Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 4/318 (1%)
Query: 345 NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404
N+ L ++AL + M++ +D+ + +C ++ G V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 405 NDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMT 464
+ S + + NA+L M+ + G L A F +M +R D SWN ++ GYA+ G +EA+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALC 173
Query: 465 SFSEMQWE-TRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523
+ M W RP +TF +L C I L +G+++H V+R +E++V AL+ +Y
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHG 583
KC + A VF D I N+MI G+ N E LE+F M++ + PD +T
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFN 643
++ AC G+ +L + K G + +I++Y G E E +RM
Sbjct: 294 VISACELLGDERLGRE-MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 644 PTVPMLRKIFDKCRKNGY 661
V I KNG
Sbjct: 353 DAVSWTAMI-SGYEKNGL 369
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-29
Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 6/287 (2%)
Query: 358 KEALD-FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNA 416
+EAL+ F L + T ++ C L I+ K V+ + + + + ++ N
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 417 LLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE--TR 474
+L M+ KCG L AR F +M + R+ SW ++ G G EA F EM WE +
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSD 221
Query: 475 PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRV 534
TF +L A A + S G+Q+HC V++ + AL+++Y+KC +E A V
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281
Query: 535 FKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNV 594
F + NSM+ G+ + EAL ++ M+ G+ D TF ++ +
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641
+ A Q + + G + ++ LY ++G M++ + +RMP
Sbjct: 342 EHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 9e-20
Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 33/360 (9%)
Query: 77 VFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH 136
V + N IE Y KC +D A +F +PE+D SW +++ N L F M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 137 SGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTD 196
+ + N +T L + A L K++H +++ G + L ++L+D Y +C M
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 197 ARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256
A F+ K+ VSWN+++ Y+ G G AV +F +M+ + P TF + L ACS
Sbjct: 543 AWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS- 600
Query: 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSL------TEMYVKCGRLEDARGLLDQ-PDERN 309
GM G+ E + +L ++ + G+L +A +++ P +
Sbjct: 601 ----RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656
Query: 310 IISWTSIVSGYAISGRIR----EARELFNEMPERNVISWNAMLAG-YTRSLLWKEALDFV 364
W ++++ I + A+ +F E+ + N + + +L Y + W E V
Sbjct: 657 PAVWGALLNACRIHRHVELGELAAQHIF-EL-DPNSVGYYILLCNLYADAGKWDE----V 710
Query: 365 FLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD-MYRK 423
+RKT ++ L V G S +++ +VH F+ ++ I N +L+ Y K
Sbjct: 711 ARVRKTMRENG-------LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-13
Identities = 66/327 (20%), Positives = 142/327 (43%), Gaps = 42/327 (12%)
Query: 307 ERNIISWTSIVSGYAISGRIREARELFNEMPERNV----ISWNAMLAGYTRSLLWKEALD 362
E N+ ++ +++ G A +G++ +A + M +NV + +NA+++ +S A D
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 363 FVFLMRKTTKDI--DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDM 420
+ M+ T I D +T+G ++ CA ++ KEV+ IH + V ++
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 421 YRKCGNLRSARIWFYQMSQR---RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPS 476
+ G+ A + M ++ D+V ++A++ G ++A + + + +
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536
++ +L+ AC+N + ++ +E+Y I+ K
Sbjct: 684 TVSYSSLMGACSNAKNWKKA----------------------LELYED-------IKSIK 714
Query: 537 ESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL 596
++ + N++I C + +ALEV MK+ G+ P+ IT+ +L+A + + +
Sbjct: 715 LRPTVSTM--NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 597 ALQFFDSMRCKYGIIPQLEHYECMIKL 623
L + + GI P L C+ L
Sbjct: 773 GLDLLSQAK-EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586
DV+ N++I G+C + EAL++F MKK GIKP+ T+ IL+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY-SILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 309 NIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAMLAGY 351
+++++ +++ GY G++ EA +LFNEM +R NV +++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 444 VSWNAVLTGYARRGQSEEAMTSFSEMQ-WETRPSKFTFETLLAACAN 489
V++N ++ GY ++G+ EEA+ F+EM+ +P+ +T+ L+
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577
+ N++I G C R EALE+F MK+ GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 311 ISWTSIVSGYAISGRIREARELFNEMPERNV 341
+++ S++SGY +G++ EA ELF EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 544 IICNSMILGFCHNERGREALEVFGLMKKEGI 574
+ NS+I G+C + EALE+F MK++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 307 ERNIISWTSIVSGYAISGRIREARELFNEMP 337
+ +++++ +++ G +GR+ EA EL +EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 311 ISWTSIVSGYAISGRIREARELFNEMPERNV 341
+++ +++ G +GR+ EA ELF EM ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVL 150
++N ++ Y + G L+LF +M G+ N TY ++L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY-SIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 444 VSWNAVLTGYARRGQSEEAMTSFSEMQ 470
V++N++++GY + G+ EEA+ F EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.79 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.47 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.23 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.15 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.07 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.98 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.45 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.44 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.32 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.29 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.16 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.03 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.39 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.29 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.78 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.5 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.74 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.22 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.9 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.49 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.31 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 93.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.16 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.03 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.66 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.39 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.1 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.48 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.65 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.43 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.33 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.14 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.91 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.73 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.39 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.98 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.5 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 88.39 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.31 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.97 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.83 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.85 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.47 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.05 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.78 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.75 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.74 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.24 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 85.12 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.98 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.87 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.76 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 83.62 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.76 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.48 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.12 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.09 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-89 Score=754.22 Aligned_cols=627 Identities=31% Similarity=0.564 Sum_probs=607.9
Q ss_pred hccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHH
Q 043637 33 HLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWN 112 (693)
Q Consensus 33 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 112 (693)
+...+.+|+..+|..++.+|.+.+.+..+.+++..+.+.++.++..+++.++..|++.|+++.|+++|++|.+||..+||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 44567889999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC
Q 043637 113 AMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM 192 (693)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 192 (693)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 193 VMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 043637 273 IDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYT 352 (693)
Q Consensus 273 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 352 (693)
.|+.||..+|+.|+.+|++.|+++ +|.++|++|.+||..+|+.++.+|+
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWG-------------------------------EAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHH-------------------------------HHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 999999999999999999999999 8888888888899999999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch
Q 043637 433 WFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV 512 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 512 (693)
++.++ .++|..+|+.++.+|++.|+.++|+++|++|.....||..||..++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 446 vf~~m-~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 446 VFHNI-PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHhC-CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 77665 56899999999999999999999999999998645999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEG 592 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 592 (693)
.++++|+++|+++|++++|.++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++++|.++|+.|.++.|+.|+..+|+.++.+|++.|++++|.+++++|+..|+...|.+++.+|..+|+.+.|+.+.+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999996689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhhhhcccC
Q 043637 673 NELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 673 ~~~~p~~~~~~~~l~~~y~~ 692 (693)
++++|++++.|+.|+|+|+.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999973
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=643.43 Aligned_cols=547 Identities=27% Similarity=0.406 Sum_probs=523.9
Q ss_pred hhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccH
Q 043637 32 GHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSW 111 (693)
Q Consensus 32 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 111 (693)
.+...|+.||..+|+.++++|+..+++..+.+++..+.+.|+.|++.+++.++.+|++.|++++|.++|++|+++|..+|
T Consensus 177 ~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchh
Confidence 34456888888899999999888888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 112 NAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHH
Q 043637 192 MVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVII 271 (693)
Q Consensus 192 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (693)
|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHH
Q 043637 272 KIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGY 351 (693)
Q Consensus 272 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 351 (693)
+.|+.|+..+++.|+++|+++|+++ +|.++|++|.++|..+|+.++.+|
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCID-------------------------------KALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHH-------------------------------HHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999 888888888889999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHH
Q 043637 352 TRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSAR 431 (693)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 431 (693)
++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++++++++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 6999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHH-HhCCC
Q 043637 432 IWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVI-RNCYE 509 (693)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~ 509 (693)
+.+.++ .+|..+||++|.+|++.|+.++|+++|++|...| .||..||+.++.+|++.|.+++|.++|+.|. +.|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 888887 8899999999999999999999999999999999 9999999999999999999999999999999 58999
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLA 587 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 587 (693)
|+..+|+.++++|++.|++++|.+++++|. +||..+|++|+.+|...|+.+.+....+++.+ +.|+. ..|..+.+.
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNL 700 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHH
Confidence 999999999999999999999999999997 99999999999999999999999999999998 68865 566666799
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
|+..|+|++|.++.+.|++ .|+++++.
T Consensus 701 ya~~g~~~~a~~vr~~M~~-~g~~k~~g 727 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRE-NGLTVDPG 727 (857)
T ss_pred HHHCCChHHHHHHHHHHHH-cCCCCCCC
Confidence 9999999999999999997 49998765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=565.07 Aligned_cols=529 Identities=14% Similarity=0.163 Sum_probs=387.4
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCC-CCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYP-TPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAY 118 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 118 (693)
++...|..++..+++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|..|..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445555555555555555555555555555553 334444455555555555555555555555555555555555555
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (693)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv------------------- 508 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH------------------- 508 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-------------------
Confidence 5555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH--hcCC
Q 043637 199 RMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK--IDFE 276 (693)
Q Consensus 199 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~ 276 (693)
+|+.+|.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.. .|+.
T Consensus 509 ------------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 509 ------------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred ------------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 45555555555566666666666666667777777777777777777777777777777765 4567
Q ss_pred CchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHH
Q 043637 277 GDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE----RNVISWNAMLAGYT 352 (693)
Q Consensus 277 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 352 (693)
||..+|+.++.+|++.|+++ +|.++|+.|.+ |+..+|+.+|.+|+
T Consensus 577 PD~vTynaLI~ay~k~G~ld-------------------------------eA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVD-------------------------------RAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHH-------------------------------HHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 77777777777777777777 44444444443 56677788888888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.+
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888888888888889999999999999999999999999999999998999999999999999999999999988
Q ss_pred HHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 043637 433 WFYQMSQ---RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY 508 (693)
Q Consensus 433 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 508 (693)
++.++.. .||..+|+.||.+|++.|++++|.++|++|...| .|+..||+.++.+|++.|+++.|.+++.+|.+.|+
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8888764 5889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 509 EINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
.|+..+|+.++..+.+ ++++|..+.+.+...+. .......+..+.|..+|++|.+.|+.||..||+.++.++
T Consensus 786 ~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 786 KPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 9999999999876432 35555544333221110 011111233467999999999999999999999999888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..+..+.+..+++.|.. .+..|+..+|+.+++++.+. .++|..++++|.
T Consensus 858 ~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred cccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 899999999999998875 48889999999999998432 468999999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=551.56 Aligned_cols=474 Identities=25% Similarity=0.399 Sum_probs=454.9
Q ss_pred CCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCC-CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhH
Q 043637 105 ERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSG-VSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESS 183 (693)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (693)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchh
Q 043637 184 LVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEG 263 (693)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 263 (693)
++.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 043637 264 MQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS 343 (693)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 343 (693)
.+++..+.+.|+.+|..++++|+++|+++|+++ +|.++|+.|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE-------------------------------DARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH-------------------------------HHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999999 8888888888899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|++|+..++++++++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCF 502 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 502 (693)
+|++++|.++|.++. +||..+||+||.+|++.|+.++|+++|++|...| .||..||+.++.+|++.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999977777664 5899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHH-hCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hH
Q 043637 503 VIR-NCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HI 579 (693)
Q Consensus 503 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 579 (693)
|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++.|..+++++.+ +.|+ ..
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 987 7999999999999999999999999999999998 89999999999999999999999999999976 6775 57
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
+|..+++.|++.|++++|.++++.|.++ |+++.
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 9999999999999999999999999974 87644
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=535.41 Aligned_cols=505 Identities=13% Similarity=0.176 Sum_probs=360.2
Q ss_pred CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHH
Q 043637 139 VSANQITYANVLRSSAEELELGVSKQLHGLIVKRGF-CGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVR 217 (693)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 217 (693)
..++...|..++..+++.|+++.|.++|++|.+.|+ +++..+++.++.+|.+.|..++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356777899999999999999999999999999995 5678888999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhH
Q 043637 218 RYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLED 297 (693)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 297 (693)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHhhhcCCCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCcccHHHHHHHHHhCCCHHHHHHHHHHH
Q 043637 298 ARGLLDQPDE----RNIISWTSIVSGYAISGRIREARELFNEMP------ERNVISWNAMLAGYTRSLLWKEALDFVFLM 367 (693)
Q Consensus 298 a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 367 (693)
|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7666665542 455555555555555555555555555552 145555555555555555555555555555
Q ss_pred HHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHH
Q 043637 368 RKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWN 447 (693)
Q Consensus 368 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (693)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA----------------- 668 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA----------------- 668 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-----------------
Confidence 555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
.++|++|.+.| .|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|
T Consensus 669 ---------------~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 669 ---------------FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred ---------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 44444444444 44445555555555555555555555555444444455555555555555555
Q ss_pred CHHHHHHHHhcCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc------------
Q 043637 527 CLEYAIRVFKESS----SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH------------ 590 (693)
Q Consensus 527 ~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~------------ 590 (693)
++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5555555544443 355555555555555555555555555555555555555555555543221
Q ss_pred -----------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHhHHHHHHHH
Q 043637 591 -----------EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP---FNPTVPMLRKIFDKC 656 (693)
Q Consensus 591 -----------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~ 656 (693)
.+..+.|..+|++|.+ .|+.||..+|..++.++++.+..+.+..+++.|. ..++..+|+.+++.+
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 1234679999999997 5999999999999999999999999999999986 355677999999988
Q ss_pred HhcCCccHHHHHHHHHhh--cCCC
Q 043637 657 RKNGYATLGEWAARRLNE--LNPW 678 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~--~~p~ 678 (693)
.+. .++|...++.+.+ +.|+
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCC
Confidence 432 3689999999988 4563
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-64 Score=538.04 Aligned_cols=455 Identities=32% Similarity=0.521 Sum_probs=439.9
Q ss_pred CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHH
Q 043637 206 NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRED-IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGS 284 (693)
Q Consensus 206 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (693)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHH
Q 043637 285 LTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFV 364 (693)
Q Consensus 285 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 364 (693)
++.+|++.|+++ .|.++|++|.+||..+||.++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~-------------------------------~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLI-------------------------------DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHH-------------------------------HHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999 8888888888899999999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChh
Q 043637 365 FLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKV 444 (693)
Q Consensus 365 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (693)
++|.+.|+.|+..||+.++.+|+..|..+.+.+++..+.+.|+.++..+++.++++|+++|++++|.+++.++ .++|.+
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~~~v 291 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-PEKTTV 291 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-CCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997776665 567999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
+||.++.+|++.|++++|+++|++|...| .|+..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
++|++++|.++|++|..+|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
|.++.|+.|+..+|+.++.+|++.|++++|.+++++|...|+..+|+.++.+|..+|+++.|+.+++++++++|++..+|
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccC
Q 043637 684 KITTNRFDR 692 (693)
Q Consensus 684 ~~l~~~y~~ 692 (693)
+.|+++|++
T Consensus 532 ~~L~~~y~~ 540 (697)
T PLN03081 532 VVLLNLYNS 540 (697)
T ss_pred HHHHHHHHh
Confidence 999999974
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=345.33 Aligned_cols=641 Identities=12% Similarity=0.015 Sum_probs=338.7
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHHHHH
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAMLGA 117 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 117 (693)
+...+..+...+...|++++|.++++.+.+..+ ++...+..+...+...|++++|...|++..+ .+..++..++..
T Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 236 (899)
T TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATI 236 (899)
T ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 344555555555566666666666666555432 3444455555555555666666555555432 133344444555
Q ss_pred HHhCCChhhHHHHHHHhhhCCCC--------------------------------CC-HhhHHHHHHHhhccCChHHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVS--------------------------------AN-QITYANVLRSSAEELELGVSKQ 164 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~--------------------------------~~-~~~~~~ll~~~~~~~~~~~a~~ 164 (693)
+...|++++|...++.+.+.... |+ ...+..+...+...|+++.|..
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 316 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555544433211 11 1111222223333444444444
Q ss_pred HHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 043637 165 LHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIR 241 (693)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 241 (693)
.++.+.+.. +.+...+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.+.|+++.+.. +
T Consensus 317 ~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 394 (899)
T TIGR02917 317 YLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-P 394 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 444444332 22333344444455555555555555544432 223344455555555555555555555554421 1
Q ss_pred CCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC---------------------------------CCchHHHHHHHHH
Q 043637 242 PLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF---------------------------------EGDDVVLGSLTEM 288 (693)
Q Consensus 242 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~l~~~ 288 (693)
.+...+..+...+...|+.+.|...+..+.+... +.+..++..+...
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1222333344444444444444444444433321 2233344444444
Q ss_pred HHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHH
Q 043637 289 YVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALD 362 (693)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 362 (693)
+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+.+.+ .+..++..+...+.+.|++++|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444322 1223344444444445555555555444432 233344444455555555555555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--
Q 043637 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-- 440 (693)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 440 (693)
+++++...+ +.+...+..+...+...|+++.+..+++.+.+.. +.+...+..+..++...|++++|...+.++...
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555554432 2233344445555555555555555555554432 334455556666666666666665555555431
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 043637 441 RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVE 520 (693)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 520 (693)
.+...+..+...+.+.|++++|...|+++....+.+..++..+...+...|++++|..+++.+.+... .+...+..+..
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 711 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGD 711 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHH
Confidence 23445555556666666666666666665554455555666666666666666666666666655443 24455555666
Q ss_pred HHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 598 (693)
.+...|++++|...++.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 6666666666666666654 3444555566666666777777777776666631 224456666666777777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
+.++++.+ ..++++..+..++..+.+.|+ .+|+.+++++. .+.++..+..++..+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777764 334456666667777777777 66777776653 23445566666777777777777777777777777
Q ss_pred CCCCcchhhhhhccc
Q 043637 677 PWAPFQFKITTNRFD 691 (693)
Q Consensus 677 p~~~~~~~~l~~~y~ 691 (693)
|.++.++..++.+|.
T Consensus 868 ~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 868 PEAAAIRYHLALALL 882 (899)
T ss_pred CCChHHHHHHHHHHH
Confidence 777777777776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=344.02 Aligned_cols=643 Identities=12% Similarity=-0.012 Sum_probs=456.7
Q ss_pred CCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHH
Q 043637 38 EPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAM 114 (693)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 114 (693)
.+.+...+..+...+...|+++.|...++.+.+..+ .+...+..+...+...|++++|.++++++.+ .+...+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344556777788888899999999999999988765 3566778889999999999999999988753 355678888
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCH
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVM 194 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 194 (693)
...+...|+++.|...|++..+.+ +.+..++..+...+...|++++|...++.+.+.... +..........+...|++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCH
Confidence 888999999999999999988764 456778888888888999999999999888876532 223333333444556667
Q ss_pred HHHHHHHhccCCCCc---ccHHHHHHHHHhcCCchHHHHHHHHHHHCC--------------------------------
Q 043637 195 TDARRMFDDIQNKNA---VSWNVIVRRYLVAGNGKEAVVMFFKMLRED-------------------------------- 239 (693)
Q Consensus 195 ~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-------------------------------- 239 (693)
++|...|+.+.+.+. ..+..+...+...|++++|...|....+..
T Consensus 278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 357 (899)
T TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357 (899)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777666665543211 112223334444555555555555544321
Q ss_pred -CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC---CchhHHH
Q 043637 240 -IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER---NIISWTS 315 (693)
Q Consensus 240 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 315 (693)
...+...+..+...+...|+.++|...++.+.+.. +.+...+..+...+...|++++|...++...+. .......
T Consensus 358 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 436 (899)
T TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436 (899)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHH
Confidence 11223344444444444444444444444444332 112333444444444455555554444443321 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccch
Q 043637 316 IVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEI 392 (693)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 392 (693)
++..+.+.|++++|..+++.+.. .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 55556666666666666666554 344567777777777777777777777776542 22344555566667777788
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 043637 393 KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQ 470 (693)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 470 (693)
++|.+.++.+.+.. +.+..++..+...+.+.|+.++|...+.+.... .+...+..++..+...|++++|.++++++.
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888887777654 446667777788888888888887777776542 355567778888888888888888888887
Q ss_pred hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHH
Q 043637 471 WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICN 547 (693)
Q Consensus 471 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 547 (693)
...+.+...+..+..++...|++++|...++.+.+.... +...+..+..++.+.|++++|...++++. +.+...+.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 766777788888888888889999998888888875432 56677788888888899999988888765 45677888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
.++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.++.+.. ..|+...+..++.++.+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHC
Confidence 88888889999999999999888853 34567777788888999999999999999874 345557778888999999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|+.++|...++++. .+.+...+..++..|...|+.++|...++++++.+|+++..+..++++|.
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999988874 45567788888889999999999999999999999999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-27 Score=266.33 Aligned_cols=626 Identities=10% Similarity=-0.006 Sum_probs=459.4
Q ss_pred hHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--CCcccH---------
Q 043637 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--RDGGSW--------- 111 (693)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~--------- 111 (693)
..+...++.+...++.+.|.+.++++....+ .++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 4467778888999999999999999998875 3688888999999999999999999999865 322211
Q ss_pred --------HHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhh-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHh
Q 043637 112 --------NAMLGAYTQNGFPGRTLELFLDMNHSGVSANQIT-YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES 182 (693)
Q Consensus 112 --------~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 182 (693)
..+.+.+...|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++.+.+.. +.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223446788999999999999998763 444322 1112222334689999999999999885 44677888
Q ss_pred HHHHHhhcCCCHHHHHHHHhccCCCCcc------cH-----------------HHHHHHHHhcCCchHHHHHHHHHHHCC
Q 043637 183 SLVDAYGKCMVMTDARRMFDDIQNKNAV------SW-----------------NVIVRRYLVAGNGKEAVVMFFKMLRED 239 (693)
Q Consensus 183 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~g 239 (693)
.+...+...|+.++|+..++++.+.... .| ...+..+-.....+.|...+..+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987542111 01 111111111122344555555544432
Q ss_pred CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC--CCc---hhHH
Q 043637 240 IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE--RNI---ISWT 314 (693)
Q Consensus 240 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~ 314 (693)
..|+... ......+...|++++|...++...+.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 2333221 123455667899999999999998864 33678889999999999999999999987664 221 1121
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-Hhh
Q 043637 315 ------------SIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID-QVT 378 (693)
Q Consensus 315 ------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 378 (693)
.....+.+.|++++|+..|++..+ .+...+..+...+...|++++|++.|++..+. .|+ ...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 224567889999999999999876 34456777888999999999999999999875 343 344
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHH
Q 043637 379 LGLILNVCAGLSEIKMGKEVHGFIHRNDY--------SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNA 448 (693)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~ 448 (693)
+..+...+ ..++.++|..+++.+..... ......+..+...+...|++++|+..+.+.+.. | +...+..
T Consensus 422 ~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44555555 34577888888765432210 011224556777888999999999999998773 4 5567788
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch---------hHHHHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV---------VCRGALV 519 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~ 519 (693)
+...|.+.|++++|...++++....+.+...+..+...+...++.++|...++.+......+.. ..+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 8999999999999999999987765555555555566677889999999998876543222221 1223456
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 598 (693)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|++..+ ..|+ ...+..++..+...|++++|.
T Consensus 581 ~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 778899999999999984 355666778899999999999999999999999 5675 688889999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH------HhHHHHHHHHHhcCCccHHHHHHH
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF--NPTV------PMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
+.++.+.+ ..+.+...+..+..++.+.|++++|.+.++++.. +.++ ..+..+...+...|+.++|...|+
T Consensus 658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998864 2233456677788999999999999999998852 2222 356667888899999999999999
Q ss_pred HHhh---cCCCCCc
Q 043637 671 RLNE---LNPWAPF 681 (693)
Q Consensus 671 ~~~~---~~p~~~~ 681 (693)
+++. +.|..|.
T Consensus 736 ~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 736 DAMVASGITPTRPQ 749 (1157)
T ss_pred HHHhhcCCCCCCCC
Confidence 9985 4444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-25 Score=250.71 Aligned_cols=597 Identities=10% Similarity=-0.017 Sum_probs=437.5
Q ss_pred hhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhh-----------
Q 043637 80 LNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQIT----------- 145 (693)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------- 145 (693)
....++.+...++.+.|.+.++++.. .++..+..++..+.+.|+.++|.+.+++..+.. +.+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcC
Confidence 44566777888999999999998753 367788889999999999999999999998874 223222
Q ss_pred -----HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh-HhHHHHHhhcCCCHHHHHHHHhccCC--C-CcccHHHHH
Q 043637 146 -----YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL-ESSLVDAYGKCMVMTDARRMFDDIQN--K-NAVSWNVIV 216 (693)
Q Consensus 146 -----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 216 (693)
.....+.+...|++++|.+.++.+.+.+ +|+... ...+.......|+.++|++.++++.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1333446788999999999999998765 333321 11122223346999999999999885 3 445678888
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCC----------------CHH---hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCC
Q 043637 217 RRYLVAGNGKEAVVMFFKMLREDIRP----------------LNF---TFANALFACSFLSSPYEGMQIHGVIIKIDFEG 277 (693)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 277 (693)
..+...|++++|+..++++....... +.. .+...+..+-.......+...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999986532110 000 11111222222222334444444443333333
Q ss_pred chHHHHHHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc---cHH----
Q 043637 278 DDVVLGSLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE--RNVI---SWN---- 345 (693)
Q Consensus 278 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~---- 345 (693)
+.. .......+...|++++|+..|++..+ .+...+..+..++.+.|++++|+..|++..+ |+.. .|.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345677889999999999998665 3567888999999999999999999998775 3321 121
Q ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043637 346 --------AMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNAL 417 (693)
Q Consensus 346 --------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (693)
.....+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++...+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 22345778999999999999998863 2345566677788899999999999999998764 4455666777
Q ss_pred HHHHHHcCChHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 418 LDMYRKCGNLRSARIWFYQMSQRR-----------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 418 ~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
...|. .++.++|...+....... ....+..+...+...|++++|++.|++.....+.+...+..+...
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77774 467888976665543211 122355567788899999999999999988777677888899999
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC----CH---------HHHHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL----DV---------IICNSMILGF 553 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~ 553 (693)
+...|++++|...++++.+.... +...+..+...+...++.++|...++.+... +. ..+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999875443 4444445555677889999999999987621 11 1123456778
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
...|+.++|.++++. .+++...+..+...+.+.|++++|+..++++.+ ..+.++..+..++..|...|+.++|
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999872 244556777888999999999999999999985 3445678889999999999999999
Q ss_pred HHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc------chhhhhhcc
Q 043637 634 EDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF------QFKITTNRF 690 (693)
Q Consensus 634 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~y 690 (693)
+..+++... +.+...+..+..++...|++++|.+.++++++..|+++. .+..++.+|
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 999998762 345566777888899999999999999999998876653 344445554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-23 Score=220.73 Aligned_cols=211 Identities=11% Similarity=-0.008 Sum_probs=129.4
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCc--ccHHHHHHHHHhCCChhhHHH
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDG--GSWNAMLGAYTQNGFPGRTLE 129 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~ 129 (693)
+...|++.+|...|+.+++..|.. ..++..+...|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 444588888888888888887654 77778888888888888888888888765333 2333333222 77778888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHh-----hccCChHHHHHHHHHHHHhCCCCchhhHhHH-HHHhhcCCCHHHHHHHHhc
Q 043637 130 LFLDMNHSGVSANQITYANVLRSS-----AEELELGVSKQLHGLIVKRGFCGNVILESSL-VDAYGKCMVMTDARRMFDD 203 (693)
Q Consensus 130 ~~~~m~~~g~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~ 203 (693)
+++++.+.. +-+..++..+.... ....+.++|.+.++ .......|+..+.... ...|.+.|++++|++++.+
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 888887763 22334444444430 11223355555555 3333333344433333 7777777787777777777
Q ss_pred cCCCCcc---cHHHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHh
Q 043637 204 IQNKNAV---SWNVIVRRYLV-AGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKI 273 (693)
Q Consensus 204 ~~~~~~~---~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (693)
+.+.++. ....|-..|.. .++ +.+..+++. .++-+......+...+...|+.+.|..++..+...
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 7653222 24445555555 255 666666442 23356667777777777777777777777765544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-21 Score=211.30 Aligned_cols=576 Identities=9% Similarity=-0.042 Sum_probs=359.7
Q ss_pred ccCChhhHHHhhccCCC--C-CcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 043637 89 KCGNLDDARGLFDEMPE--R-DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQL 165 (693)
Q Consensus 89 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 165 (693)
..|++++|+..|+...+ | +..++..|.+.|...|+.++|+..+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 34777777777776643 2 3445666677777777777777777777665 33333333333222 666677777
Q ss_pred HHHHHHhCCCCchhhHhHHHHH--------hhcCCCHHHHHHHHhccCCCC--cccHH-HHHHHHHhcCCchHHHHHHHH
Q 043637 166 HGLIVKRGFCGNVILESSLVDA--------YGKCMVMTDARRMFDDIQNKN--AVSWN-VIVRRYLVAGNGKEAVVMFFK 234 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~a~~~~~~ 234 (693)
++++.+.. +.+..++..+... |.+.+...++++ .+...++ ..... .+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 77777664 2334444444444 555555555554 2222232 22223 336667777777777777777
Q ss_pred HHHCCCCCCHHhHHHHHHHhcC-CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC-----C
Q 043637 235 MLREDIRPLNFTFANALFACSF-LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE-----R 308 (693)
Q Consensus 235 m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~ 308 (693)
+.+.+.. +..-...+-.++.. .++ +.+..+++. ....+......+.+.|.+.|+.++|..+++++.. |
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 7765422 22234444444444 244 444444332 2235666677777777777777777777665442 1
Q ss_pred Cchh------------------------------HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHH--HhCCC
Q 043637 309 NIIS------------------------------WTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGY--TRSLL 356 (693)
Q Consensus 309 ~~~~------------------------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 356 (693)
...+ .-.++..+.+.++++.+.++.. . .|.... ..+... ...+.
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~r~~~~~~~~~ 357 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T-LPANEM--LEERYAVSVATRN 357 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C-CCcchH--HHHHHhhccccCc
Confidence 1111 1112344455555555554422 1 111111 122211 12244
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHHcCC---hHHH-
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN-D-YSSNIFVSNALLDMYRKCGN---LRSA- 430 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a- 430 (693)
..++...+..|.+.. +-+......+.-.....|+.++|.++++..... + -..+......++..|.+.+. ..++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 555555555554431 112222222223334566667777776666542 1 12233344456666665544 2222
Q ss_pred ------------------------HHHHHhhcCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 431 ------------------------RIWFYQMSQR--R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 431 ------------------------~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
...+...+.. + +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~ 514 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRA 514 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHH
Confidence 2222222322 2 45567777777776 8899999988887655 355555555
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhCCCh
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS---LDVIICNSMILGFCHNERG 559 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 559 (693)
+...+...|++++|...++++... .|+...+..+...+.+.|+.++|...++.... .+...+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 566667899999999999987654 23344456677888999999999999988773 2333333444455567999
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
++|...+++..+ +.|+...+..+..++.+.|++++|+..+++..+ -.+.+...+..+...+...|++++|+..+++
T Consensus 593 ~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 678888899999999999999999999999985 3444577788889999999999999999998
Q ss_pred CC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 640 MP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 640 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
.. .+.++..+..+..++...|++++|...++++++++|++.......+++..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 75 45667789999999999999999999999999999999888888887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-21 Score=182.16 Aligned_cols=367 Identities=11% Similarity=0.048 Sum_probs=273.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-Hhc
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV-CAG 388 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~ 388 (693)
|..+.+.+-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.....+-+.- +..
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHh
Confidence 33344444444444455555554443 2334455555555555555555555555443 34443333322222 223
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CCC-hhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RRD-KVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
.|++++|...+.+.++.. +.-...|+.|...+-..|++..|+..+++... +|+ ..+|-.|...|...+.+++|+..+
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 455666665555555432 22345677777788888888888888888877 343 457888888899999999999888
Q ss_pred HHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCH
Q 043637 467 SEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDV 543 (693)
Q Consensus 467 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 543 (693)
.+.....+.....+..+...|...|..+.|..-+++.++..+. -+..|+.|..++...|+..+|.+.+.+.. +...
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 8877665666778888888888999999999999988885443 46778889999999999999999998876 5556
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMI 621 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 621 (693)
...+.|...+...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..++++. .+.|+ ...|+.+.
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmG 429 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcc
Confidence 7888999999999999999999999998 78874 778999999999999999999999987 57787 56789999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 622 KLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
..|-..|+.+.|++.+.+.. .+| -......+...|.-+|+..+|++.|+.+++++|+.|.++.+|+.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 99999999999999998875 344 35577888899999999999999999999999999999888764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-19 Score=179.13 Aligned_cols=634 Identities=12% Similarity=0.031 Sum_probs=436.4
Q ss_pred hHHHHHHHHhhcCccHHHHHHHHHHHHHhCC----CCCch---hhhHHHHHHhcc-----------CChhhHHHhhccCC
Q 043637 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYP----TPPVF---LLNRAIECYGKC-----------GNLDDARGLFDEMP 104 (693)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~---~~~~l~~~~~~~-----------g~~~~A~~~~~~~~ 104 (693)
.+|..+...|...|..++...+++...-... .++.. .++.+..-|+.. ..+..|.-+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 5799999999999999999999998762211 11111 111122222111 12223333443322
Q ss_pred CCCcccHHHH---HHHHHhCCC--hhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh--ccCChHHHHHHHHHHHHhCC--C
Q 043637 105 ERDGGSWNAM---LGAYTQNGF--PGRTLELFLDMNHSGVSANQITYANVLRSSA--EELELGVSKQLHGLIVKRGF--C 175 (693)
Q Consensus 105 ~~~~~~~~~l---i~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~ 175 (693)
..+......+ -..|...|. .+.|...|....+.. +++.- ..+.++|. ..+++..|..+|+....... .
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 2111111111 112233333 478888888887763 44433 34445554 67899999999999776653 4
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHH---hc---CCchHHHHHHHHHHHCCCCCCHHhHHH
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYL---VA---GNGKEAVVMFFKMLREDIRPLNFTFAN 249 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ 249 (693)
||+. ..+...+.+.|+.+.|...|.+..+-|+...++++.... .. ..+..++.++...-... .-++...+.
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 4443 344567789999999999999999877665555543221 22 23455555555543321 235567788
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCChhHHHhhhcCCCCC--C--chhHHHHHHHHHhc
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFE--GDDVVLGSLTEMYVKCGRLEDARGLLDQPDER--N--IISWTSIVSGYAIS 323 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~ 323 (693)
|.+.+...|+...+..+...+...... .-...|--+.++|...|++++|...|-+..+. + +..+-.+...+...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 888999999999999999988776422 22345777889999999999999999776552 2 34566788999999
Q ss_pred CCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH
Q 043637 324 GRIREARELFNEMPE--R-NVISWNAMLAGYTRSL----LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 324 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (693)
|+.+.+...|+.+.+ | +..+...|...|...+ ..++|..++.+..+.- +-|...|..+-..+....-+. ..
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL 433 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SL 433 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HH
Confidence 999999999999876 3 4456666667777664 4566666666655432 334455555555554443333 24
Q ss_pred HHHH----HHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC------CCh------hhHHHHHHHHHhcCChH
Q 043637 397 EVHG----FIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR------RDK------VSWNAVLTGYARRGQSE 460 (693)
Q Consensus 397 ~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~------~~~~~l~~~~~~~~~~~ 460 (693)
.++. .+...+..+.+.+.|.+...+...|++++|...+.+.... ++. .+--.+...+-..++++
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 4444 3445666788899999999999999999998888887663 222 12233556666778999
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
.|.+.|..+....+.-...|..++......+...+|...++......- .++..++.+...+.+...+..|..-|..+.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 999999999887655566676666444556788889888888877332 255556667778888888877777444333
Q ss_pred ----CCCHHHHHHHHHHHHh------------CCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 540 ----SLDVIICNSMILGFCH------------NERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 540 ----~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+|+.+.-.|...|.. .+..++|+++|.+.+. ..| |...-+.+.-.++..|+++.|..+|.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFs 670 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFS 670 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHH
Confidence 4566665555554432 2347788999998888 566 66888888889999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
++.+. ......+|-.+..+|..+|++-.|+++|+... ...++.....|..++...|.+.+|..++..+..+.|.
T Consensus 671 qVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 671 QVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99873 33455678889999999999999999998663 4667888889999999999999999999999999999
Q ss_pred CCcchhhhhhc
Q 043637 679 APFQFKITTNR 689 (693)
Q Consensus 679 ~~~~~~~l~~~ 689 (693)
++....+++-+
T Consensus 749 ~~~v~FN~a~v 759 (1018)
T KOG2002|consen 749 NTSVKFNLALV 759 (1018)
T ss_pred cchHHhHHHHH
Confidence 99887777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-18 Score=173.05 Aligned_cols=576 Identities=13% Similarity=0.060 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHhCCCCCchhhhHHHHHHhccCC--hhhHHHhhccCCCCCcc-cHHHHHHHH--HhCCChhhHHHHHHHh
Q 043637 60 EARKLESNLVTFYPTPPVFLLNRAIECYGKCGN--LDDARGLFDEMPERDGG-SWNAMLGAY--TQNGFPGRTLELFLDM 134 (693)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~~~~~~a~~~~~~m 134 (693)
.|..+|..+-+..+..++..+..-.- |...|. .+.|...|..+.+.++. ..-.+..++ ...+++..|+.+|...
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34455555544444333333222111 112233 58888888887654333 333444554 3567899999999986
Q ss_pred hhC--CCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC---CCHHHHHHHHhccC---C
Q 043637 135 NHS--GVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC---MVMTDARRMFDDIQ---N 206 (693)
Q Consensus 135 ~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~ 206 (693)
... ..+||.. ..+-..+.+.++.+.|...|....+... -++.++..|...-... ..+..+..++...- .
T Consensus 191 l~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~ 267 (1018)
T KOG2002|consen 191 LRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN 267 (1018)
T ss_pred HhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC
Confidence 543 3445542 2233455688899999999988887642 2333333333222222 33444555555443 3
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHH
Q 043637 207 KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIR--PLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGS 284 (693)
Q Consensus 207 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (693)
.|++..+.|...|.-.|+++.++.+...+...... .-...|-.+.+++-..|+++.|...|-...+.....-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 57888899999999999999999999888764311 1234688888999999999999999887766543333444556
Q ss_pred HHHHHHHcCChhHHHhhhcCCCCC---CchhHHHHHHHHHhcC----CHHHHHHHHhhCCCC---CcccHHHHHHHHHhC
Q 043637 285 LTEMYVKCGRLEDARGLLDQPDER---NIISWTSIVSGYAISG----RIREARELFNEMPER---NVISWNAMLAGYTRS 354 (693)
Q Consensus 285 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 354 (693)
|...|.+.|+++.+...|+++.+. +..+...|...|+..+ ..+.|..++.+..++ |...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 788999999999999999887652 4456666667776664 567777777777663 455666665555554
Q ss_pred CCHHHHHHHHHH----HHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh---CCC------CchhHHHHHHHHH
Q 043637 355 LLWKEALDFVFL----MRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN---DYS------SNIFVSNALLDMY 421 (693)
Q Consensus 355 ~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~ 421 (693)
.-+.. +..|.. |...+-.+.....|.+-......|.+..|...+...... ... ++..+--.+..++
T Consensus 428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44433 666554 345566678888888888889999999999988887654 112 2222344466777
Q ss_pred HHcCChHHHHHHHHhhcCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQR-RDK-VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
...++.+.|.+.+.+.+.. |+- ..|-.+.......+...+|...+.........++..+..+...+.....+..|.+-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 7788999998888888774 443 34555554444567888999999998777755555555666677788888888887
Q ss_pred HHHHHHh-CCCcchhHHHHHHHHHHh------------hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 500 HCFVIRN-CYEINVVCRGALVEVYTK------------CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 500 ~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
|....+. ...+|+.+.-+|.+.|.. .+..++|+++|.++. +.|...-|.+.-+++..|++..|.
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 7766652 223577777777776543 356788999999877 556778888999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 564 EVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|.+..+... -...+|..+.++|...|+|..|+++|+....++.-.-++.+...|.+++.+.|.+.+|.+.+....
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999743 345678899999999999999999999999887877789999999999999999999999887664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-19 Score=167.10 Aligned_cols=273 Identities=15% Similarity=0.136 Sum_probs=192.8
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMY 421 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (693)
..|+.|...+-..|+...|+..|++..+. .|+ -...|-.|...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~----------------------------------f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN----------------------------------FLDAYINLGNVY 262 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCc----------------------------------chHHHhhHHHHH
Confidence 45666666666777777777777666542 222 122344455556
Q ss_pred HHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
...+.++.|...+...+. +| ..+.+..+...|-.+|..+-|++.+++.....+.-...|+.+..++-..|++.+|.+.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHH
Confidence 666666666666665554 23 3445666666677777777777777777666555567777777787777888888888
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 043637 500 HCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP 576 (693)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 576 (693)
+......... .....+.|...|...|.+++|..+|.... -| -....+.|...|...|++++|+..+++.+. +.|
T Consensus 343 YnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 343 YNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 7777775443 45566677888888888888888887766 22 334778888888899999999999998888 888
Q ss_pred Ch-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH-hHHHH
Q 043637 577 DH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP-MLRKI 652 (693)
Q Consensus 577 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l 652 (693)
+. ..|+.+...|-..|+.+.|++.+.+++ .+.|. .+.++.|..+|-.+|+..+|++.+++.. .+||.| .+-.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 75 788888889999999999999998887 35565 5667888888999999999998888764 455544 44444
Q ss_pred HHHH
Q 043637 653 FDKC 656 (693)
Q Consensus 653 ~~~~ 656 (693)
+...
T Consensus 497 lh~l 500 (966)
T KOG4626|consen 497 LHCL 500 (966)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-17 Score=174.74 Aligned_cols=342 Identities=10% Similarity=-0.043 Sum_probs=166.8
Q ss_pred HHHcCChhHHHhhhcCCCCC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHH
Q 043637 289 YVKCGRLEDARGLLDQPDER------NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKE 359 (693)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 359 (693)
+.+..+++.-.-.|....+. +..-...++..+.+.|+.++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34556666555555544431 222344455566666666666666665544 223344444555555666666
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhc
Q 043637 360 ALDFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMS 438 (693)
Q Consensus 360 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (693)
|...++++... .|+ ...+..+...+...|+.+.|...++...+.. +.+...+..+...+...|+.++|...+....
T Consensus 95 A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 66666666553 232 2334444445555555555555555555432 2334445555555555555555555454433
Q ss_pred C-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 439 Q-RRD-KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 439 ~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
. .|+ ...+..+ ..+...|++++|...++.+.... .++......+..++...|++++|...++.+.+.... +...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 2 222 1222222 22445555555555555544433 222333333344455555555555555555543322 33444
Q ss_pred HHHHHHHHhhCCHHH----HHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH
Q 043637 516 GALVEVYTKCCCLEY----AIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLA 587 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~----A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 587 (693)
..+...|...|++++ |...+++.. +.+...+..+...+...|++++|...+++..+ ..|+. ..+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 445555555555543 455554443 33344555555555555555555555555555 33432 334444455
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+.+.|++++|...++++.+. .|+. ..+..+..++...|+.++|+..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555431 2222 22222344455555555555555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=173.88 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCC----HHHHHHHHHH
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPS----KFTFETLLAA 486 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~----~~~~~~ll~~ 486 (693)
+..+...|.+.|++++|...+.++... .+..++..++..+.+.|++++|.+.++.+...+ .+. ...+..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344455555555555555555554432 233445555555555555555555555554443 111 1123344445
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC--HHHHHHHHHHHHhCCChHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD--VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A 562 (693)
+...|++++|...++++.+.... +...+..+...|.+.|++++|.+.++++. .|+ ...++.++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 55556666666666655553322 23344555555666666666666665554 222 23455566666666666666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHh
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR---YGYMKELEDFVNR 639 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 639 (693)
...++++.+ ..|+...+..++..+.+.|++++|..+++++.+ ..|+...+..++..+.. .|+.++++.++++
T Consensus 269 ~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 666666666 345555555555666666666666666666653 24555555555555443 3466666666665
Q ss_pred CC
Q 043637 640 MP 641 (693)
Q Consensus 640 ~~ 641 (693)
|.
T Consensus 344 ~~ 345 (389)
T PRK11788 344 LV 345 (389)
T ss_pred HH
Confidence 53
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-18 Score=171.37 Aligned_cols=260 Identities=13% Similarity=0.071 Sum_probs=211.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQRRD------KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL 483 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l 483 (693)
+..++..+...+...|++++|...+..++..++ ...+..+...|.+.|++++|..+|+++....+++..++..+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 147 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL 147 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 344566666677777777777776666665442 23577888999999999999999999987767778899999
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEIN----VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
+..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++. +.+...+..+...+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 9999999999999999999998654432 2245567778889999999999999876 34466888899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
|++++|.+.++++.+. .|+ ..++..++.+|...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.
T Consensus 228 g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 228 GDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred CCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999984 454 35678889999999999999999999985 2577777788999999999999999
Q ss_pred HHHHhCC-CCCCHHhHHHHHHHHHh---cCCccHHHHHHHHHhh
Q 043637 635 DFVNRMP-FNPTVPMLRKIFDKCRK---NGYATLGEWAARRLNE 674 (693)
Q Consensus 635 ~~~~~~~-~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 674 (693)
.+++++. ..|+.+.+..++..+.. .|+..++...++++++
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9998775 56888888877776664 4588888888887775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-17 Score=172.42 Aligned_cols=419 Identities=9% Similarity=-0.072 Sum_probs=269.5
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHh
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAI 322 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 322 (693)
.+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|+..+++..+ .+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455566667777777777777776654 34556677777777777777777777766543 234466666677777
Q ss_pred cCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHH
Q 043637 323 SGRIREARELFNEMPERN---VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVH 399 (693)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (693)
.|++++|+.-|......+ ......++..+.. ..+........+.. +++..... .+..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVT-FVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHH-HHHHHHHHccCCcchhhh
Confidence 777777766654433211 1111111111111 11222222222211 11111111 111111110111111001
Q ss_pred HHHHHhCCCCch-hHHHHHHHH---HHHcCChHHHHHHHHhhcCC----C-ChhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 043637 400 GFIHRNDYSSNI-FVSNALLDM---YRKCGNLRSARIWFYQMSQR----R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQ 470 (693)
Q Consensus 400 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 470 (693)
....+ ..+.. ..+..+... ....+++++|...+.+.+.. | ....|+.+...+...|++++|+..|++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10000 01110 011111111 12346788888888887753 2 34567788888889999999999999987
Q ss_pred hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHH
Q 043637 471 WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICN 547 (693)
Q Consensus 471 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 547 (693)
...+.....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|++.. +.+...+.
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 776666778888888899999999999999999886543 56788888999999999999999999876 44567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hh-------HHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LE-------HYE 618 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-------~~~ 618 (693)
.+...+.+.|++++|+..+++..+ ..|+ ...++.+..++...|++++|+..|++..+ +.|+ .. .+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHH
Confidence 888999999999999999999888 4565 57888888999999999999999999874 2222 11 112
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.....+...|++++|...+++.. .+.+...+..++..+...|++++|...++++.++.+...
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 22223445799999999998863 334455788889999999999999999999999887543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-16 Score=172.28 Aligned_cols=392 Identities=8% Similarity=-0.058 Sum_probs=246.0
Q ss_pred HHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHH
Q 043637 286 TEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKE 359 (693)
Q Consensus 286 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 359 (693)
+......|+.++|++++.+... .+...+..+...+.+.|++++|.++++...+ .+...+..+...+...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3344445555555555544332 1222344555555555555566666655432 223344455555666666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC
Q 043637 360 ALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ 439 (693)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 439 (693)
|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+.. +.+...+..+..++...+..+.|+..+.....
T Consensus 102 A~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666554 2222114445555556666666666666666543 33444455566666667777777666665555
Q ss_pred CCChh------hHHHHHHHHH-----hcCCh---HHHHHHHHHhhhCC--CCCHH-HHH----HHHHHhcccCChHHHHH
Q 043637 440 RRDKV------SWNAVLTGYA-----RRGQS---EEAMTSFSEMQWET--RPSKF-TFE----TLLAACANISSLEQGKQ 498 (693)
Q Consensus 440 ~~~~~------~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~--~p~~~-~~~----~ll~~~~~~~~~~~a~~ 498 (693)
.|+.. ....++.... ..+++ ++|++.++.+.... .|+.. .+. ..+.++...|+.++|..
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 43310 1111222221 12233 67788888876542 33221 111 11334456688899999
Q ss_pred HHHHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 499 IHCFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD-----VIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 499 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
.|+.+.+.+.. |+. ....+...|...|++++|+..|+++. .|. ......+..++...|++++|.+.++++.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99988876532 322 22235678888999999999988765 221 2345667778889999999999999988
Q ss_pred HCC-----------CCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 571 KEG-----------IKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 571 ~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.. -.|+. ..+..+...+...|++++|++.++++.. ..+.+...+..++..+...|++++|++.
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 741 11231 2345566888899999999999999985 4555677888899999999999999999
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+++.. .+.+...+...+..+...|++++|+..++.+++..|+++.+.
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99886 344456777777788889999999999999999999888654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-14 Score=145.76 Aligned_cols=630 Identities=10% Similarity=0.034 Sum_probs=417.4
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCC---CCCcccHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMP---ERDGGSWNAMLG 116 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 116 (693)
|...........+...|++++|.+++.++.+..+ .....|..|..+|-..|+.+++...+-... ..|...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 3345555566666677999999999999999975 467889999999999999999988875543 346677888888
Q ss_pred HHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHh----HHHHHhhcCC
Q 043637 117 AYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES----SLVDAYGKCM 192 (693)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g 192 (693)
-..+.|+++.|.-+|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..++.+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999874 5555555556677889999999999999998876433433333 3455667778
Q ss_pred CHHHHHHHHhccCC-----CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhH--------------------
Q 043637 193 VMTDARRMFDDIQN-----KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTF-------------------- 247 (693)
Q Consensus 193 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------------------- 247 (693)
+-+.|.+.++.... -+...++.++..+.+...++.|......+......+|..-+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 88999988887764 34556899999999999999999998888762222222111
Q ss_pred ------HHHHHHhcCCCCcchhHHHHHHHHHhc--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC----CCchhHHH
Q 043637 248 ------ANALFACSFLSSPYEGMQIHGVIIKID--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE----RNIISWTS 315 (693)
Q Consensus 248 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ 315 (693)
.-+.-++.+....+....+...+.+.. +..+...|.-+.++|...|++.+|+.+|..+.. .+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 122334455566666666777777776 455677899999999999999999999988765 35678999
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHH
Q 043637 316 IVSGYAISGRIREARELFNEMPERN---VISWNAMLAGYTRSLLWKEALDFVFLMR--------KTTKDIDQVTLGLILN 384 (693)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~ 384 (693)
+..+|...|..++|.+.++.....+ ...--.|-..+.+.|+.++|++.++.+. ..+..|+.........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999988733 3344455667889999999999999864 2234444444445555
Q ss_pred HHhcccchhhHHHHHHHHHHhC----------------------CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC---
Q 043637 385 VCAGLSEIKMGKEVHGFIHRND----------------------YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--- 439 (693)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 439 (693)
.+...|+.++-..+...|+... .+........++.+-.+.++.......+..-..
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 6667777776555444444211 111222222333333333332222111111100
Q ss_pred ----CCChh----hHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCH---HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 440 ----RRDKV----SWNAVLTGYARRGQSEEAMTSFSEMQWET---RPSK---FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 440 ----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
.-... .+.-++..+++.+++++|+.+...+.... .++. ..-...+.++...+++..|...++.|+.
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00111 23456778899999999999998886655 3333 2234456677888999999999988887
Q ss_pred h-CCCc---chhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 506 N-CYEI---NVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD--VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 506 ~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
. +... -...|+.......+.++---=.+++.... .++ ...+.....-....+.+..|+..+-+... ..||
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd 772 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPD 772 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCC
Confidence 4 2211 23445544444444444333333333322 222 22233333344566778888888777766 5677
Q ss_pred hHHHHHHH-HHHh----------ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--
Q 043637 578 HITFHGIL-LACI----------HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNP-- 644 (693)
Q Consensus 578 ~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 644 (693)
....+..+ -++. ++-..-++..++.+..+-....-....+..++++|-..|-..-|..++++....+
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 54444333 2221 1122345556665554321222245677888999999999999999999875221
Q ss_pred --------CH----HhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 645 --------TV----PMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 645 --------~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
+- .....+.-.|.++|+...|.+++++-.
T Consensus 853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 11 123346677888999999999887643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-16 Score=142.23 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=204.6
Q ss_pred hhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHh---ccCChhhHHHhhccC---------------
Q 043637 42 YSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYG---KCGNLDDARGLFDEM--------------- 103 (693)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~--------------- 103 (693)
+.+=+.|+. ...+|.+.++.-+|++|...|.+.+..+...|.+..+ ..+-.-.-++.|-.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344455555 3456889999999999999999888887766655433 222111222333223
Q ss_pred --------CCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCC
Q 043637 104 --------PERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFC 175 (693)
Q Consensus 104 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 175 (693)
...+..+|..||.++++--..++|.++|++.....++.+..+||.+|.+..-..+ .+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 2234556777777777777777777777777766667777777777765543222 5666677776677
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhc
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
||..|+|+++++..+.|+++.|.+ .|++++.+|++.|+.|...+|..+|..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 777777777766666666665543 36778899999999999999999999998
Q ss_pred CCCCcch-hHHHHHHHHHh--c--CC----CchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCH
Q 043637 256 FLSSPYE-GMQIHGVIIKI--D--FE----GDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRI 326 (693)
Q Consensus 256 ~~~~~~~-a~~~~~~~~~~--g--~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (693)
+.++... +..++.++... | +. .|...+...+..|.+..+.+.|.++-.-. +.|+-
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll----------------~tg~N 387 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLL----------------KTGDN 387 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HcCCc
Confidence 8887755 33333333322 2 11 23344555556666666665443332111 11100
Q ss_pred HHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHH
Q 043637 327 REARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404 (693)
Q Consensus 327 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (693)
. ..|.. ....-|..+....++....+..+.+|+.|...-+-|+..+...++++....+.++-..++|.+++.
T Consensus 388 ~------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 388 W------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred h------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 0 00000 112345566667777777788888888888777778888888888888888888888888888877
Q ss_pred hCCCCchhHHHHHHHHHH
Q 043637 405 NDYSSNIFVSNALLDMYR 422 (693)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~ 422 (693)
.|...+.....-++..++
T Consensus 462 ~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 462 YGHTFRSDLREEILMLLA 479 (625)
T ss_pred hhhhhhHHHHHHHHHHHh
Confidence 775554444443433333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-15 Score=138.80 Aligned_cols=442 Identities=11% Similarity=0.033 Sum_probs=295.9
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHH---HHHHHHHHHhCCCCchhhHhHH
Q 043637 108 GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVS---KQLHGLIVKRGFCGNVILESSL 184 (693)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~l 184 (693)
+.+-|.|+. ...+|.++++.-+|+.|+..|+..+...-..|++..+-.+.-+-- ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345566654 456789999999999999999999988877777766544332222 23333444444 2222232
Q ss_pred HHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhH
Q 043637 185 VDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGM 264 (693)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 264 (693)
+.|+..+ ++-+....+..+|..||.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-..+ +
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4555544 666666678889999999999999999999999999988889999999999988654433 8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccH
Q 043637 265 QIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISW 344 (693)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 344 (693)
+++.+|......||..|+|+++.+..+.|+++.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar--------------------------------------------- 293 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR--------------------------------------------- 293 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------------------------
Confidence 89999999999999999999999999999888332
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhh-HHHHHHHHHH----hCCCC----chhHHH
Q 043637 345 NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKM-GKEVHGFIHR----NDYSS----NIFVSN 415 (693)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~ 415 (693)
..|++++.+|++.|+.|...+|..+|..+++.++..+ +.....++.. ..++| +...+.
T Consensus 294 -------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 294 -------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred -------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 2456666777777777777777777777766666543 2222333321 22222 344455
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHH
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR--------R---DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETL 483 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~l 483 (693)
.-+..+.+..+.+-|. .+...... + ...-|..+....|+....+.-+..|+.|...- -|+..+...+
T Consensus 361 ~AM~Ic~~l~d~~LA~-~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAY-QVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 5566666777777773 33333321 1 12235667778888888999999999998887 9999999999
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHH---HHHHHHHHHHhCCCh
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVI---ICNSMILGFCHNERG 559 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~ 559 (693)
+++....+.++-..++|..++..|.........-+...++ ... .|+.. -+.....-|.. .-.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~-------------~~k~hp~tp~r~Ql~~~~ak~aa-d~~ 505 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA-------------RDKLHPLTPEREQLQVAFAKCAA-DIK 505 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh-------------cCCCCCCChHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999998776544333322222222 222 23222 12222221111 112
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE---CMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~ 636 (693)
+.....-.+|.+..+. ....+..+-.+.+.|..++|.+++..+..+..--|-....+ .+++.-.+....-.|...
T Consensus 506 e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2223334455554333 44556666677889999999999998865444444444445 455666778888888888
Q ss_pred HHhCC
Q 043637 637 VNRMP 641 (693)
Q Consensus 637 ~~~~~ 641 (693)
++-|.
T Consensus 584 lQ~a~ 588 (625)
T KOG4422|consen 584 LQLAS 588 (625)
T ss_pred HHHHH
Confidence 88775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-16 Score=167.12 Aligned_cols=247 Identities=10% Similarity=-0.066 Sum_probs=186.2
Q ss_pred cchhhHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHH
Q 043637 390 SEIKMGKEVHGFIHRND-Y-SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTS 465 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 465 (693)
+++++|.+.++...+.+ . +.....+..+..++...|++++|+..+.+.+. .| ....|..+...+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666666543 1 22345566777778888888888888888776 34 345677788888888999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC
Q 043637 466 FSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD 542 (693)
Q Consensus 466 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~ 542 (693)
|++.....+.+...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|+..+++.. +.+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 98887766666778888888888899999999999988876543 45667778888889999999999998765 456
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HH-------HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-IT-------FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
...|+.+...+...|++++|++.|++..+ +.|+. .. ++..+..+...|++++|.+++++..+ ..+.+.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~ 542 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECD 542 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 77888999999999999999999999888 44532 11 11112233346899999999999874 223334
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+..++..+.+.|++++|+..|++..
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 568889999999999999999998874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-16 Score=156.02 Aligned_cols=483 Identities=12% Similarity=0.041 Sum_probs=300.2
Q ss_pred HhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcc
Q 043637 30 ISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGG 109 (693)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 109 (693)
+..+...|+.|+..+|.+++..|+..|+.+.|- +|.-|.-...+.+..+++.++..-..+|+.+.+. +|...
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aD 84 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLAD 84 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchh
Confidence 344557899999999999999999999999999 9999988888888899999999988888888776 78889
Q ss_pred cHHHHHHHHHhCCChhh---HHHHHHHh----hhCCCCCCHhhHHHHHHHhhcc-CC------hHHHHHHHHHHHHhCC-
Q 043637 110 SWNAMLGAYTQNGFPGR---TLELFLDM----NHSGVSANQITYANVLRSSAEE-LE------LGVSKQLHGLIVKRGF- 174 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~-~~------~~~a~~~~~~~~~~g~- 174 (693)
+|..|..+|..+|+... ..+.+... ...|+.....-+-..+.+|-.. .+ ..--+.+++...+.+.
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998754 22212222 2233332222222222211110 00 0111223333333331
Q ss_pred CCchhhHhH---HHHHhhc-CCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHH
Q 043637 175 CGNVILESS---LVDAYGK-CMVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFAN 249 (693)
Q Consensus 175 ~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 249 (693)
.|...-++. .+.-... ...+++-..+.....+ +++.+|..++..-..+|+.+.|..++.+|++.|+..+..-|..
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 121111111 1222222 2345555555555554 8999999999999999999999999999999999999888888
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhc------------------------CC
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLD------------------------QP 305 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------------------------~~ 305 (693)
++-+ .++...+..++..|.+.|+.|+..|+..-+..+.++|....+....+ +-
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 8766 78888899999999999999999999887776666555433222111 00
Q ss_pred C---------C-------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCcccHHHHHHHHHhCC-------
Q 043637 306 D---------E-------RNIISWTSIVSGYAISGRIREARELFNEMPE-------RNVISWNAMLAGYTRSL------- 355 (693)
Q Consensus 306 ~---------~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~------- 355 (693)
. + ....+|. ++.-...+|+-++...+...+.. .++..|..++.-|.+.-
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 0 0 0001122 12222336777777777666654 23344544444433221
Q ss_pred ---------------CHHHHHHHHHHHHHcCCCCCH----------------------------hhHHHHHHHHhcccch
Q 043637 356 ---------------LWKEALDFVFLMRKTTKDIDQ----------------------------VTLGLILNVCAGLSEI 392 (693)
Q Consensus 356 ---------------~~~~a~~~~~~m~~~~~~p~~----------------------------~~~~~ll~~~~~~~~~ 392 (693)
...+..+..... .|+. ..-+.++..|++..+.
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 1211 1122334444444444
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 393 KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRR-----DKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
..+...-+.....-++ ..|..||+.++...+.+.|.....+..... +..-+..+...+.+.+....+..++.
T Consensus 476 lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 4444333333222222 568888998888889999966666655432 44457788888999999999999999
Q ss_pred HhhhCC--CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 468 EMQWET--RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 468 ~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
++.+.- .| ...++..+++.....|+.+...+.++-+...|+..+ ..++....+.++...|.+..+
T Consensus 553 e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 553 EDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred hhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 997754 33 356677788888888999999998888888776542 223333444455555544443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-16 Score=162.87 Aligned_cols=316 Identities=9% Similarity=-0.074 Sum_probs=198.2
Q ss_pred HHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCCH
Q 043637 284 SLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE--R-NVISWNAMLAGYTRSLLW 357 (693)
Q Consensus 284 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 357 (693)
.++..+.+.|++++|..+++.... .+...+..++.+....|+.++|...|+.+.+ | +...+..+...+...|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345556667777777777766543 2344555566666667777777777777665 2 334566666677777777
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHh
Q 043637 358 KEALDFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQ 436 (693)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 436 (693)
++|...+++..+. .|+ ...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...+..
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 7777777777653 333 445555666677777777777777766554322 22222222 235667777777666666
Q ss_pred hcCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH----HHHHHHHHHHhCCC
Q 043637 437 MSQR-R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ----GKQIHCFVIRNCYE 509 (693)
Q Consensus 437 ~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~ 509 (693)
.+.. | +...+..+...+...|++++|+..+++.....+.+...+..+...+...|++++ |...++++.+..+.
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 5543 1 222333445566677777777777777766555556666667777777777764 66777776665433
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHIT-FHGIL 585 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~ 585 (693)
+...+..+...+...|++++|...+++.. +.+...+..+..++...|++++|...++++.+ ..|+... +..+.
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a 359 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAA 359 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHH
Confidence 55666677777777777777777777655 33445666667777777777777777777776 3555433 33344
Q ss_pred HHHhccCcHHHHHHHHHHhHH
Q 043637 586 LACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.++...|++++|...++++.+
T Consensus 360 ~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 566777777777777777664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-15 Score=157.68 Aligned_cols=439 Identities=10% Similarity=0.005 Sum_probs=248.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC
Q 043637 216 VRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGR 294 (693)
Q Consensus 216 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 294 (693)
+-...+.|+++.|+..|++..+. .|+.. ....++..+...|+.++|...++... ............+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence 34456788888888888888764 34431 11155555555566666666666555 1111122222223445555566
Q ss_pred hhHHHhhhcCCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 295 LEDARGLLDQPDER---NIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 295 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
+++|+.+|+++.+. +...+..++..+...++.++|++.++.+.. |+...+..++..+...++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 66666655554431 233444445555555555555555555554 2222222222222223334345555555554
Q ss_pred cCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHH
Q 043637 370 TTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAV 449 (693)
Q Consensus 370 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 449 (693)
.. +-+...+..++.++.+.|-...|.++... .|+..+-...... ..+.+.+.+......+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc-------
Confidence 32 11233333444444444444444433222 1111100000000 00000011100000000
Q ss_pred HHHHHhcCC---hHHHHHHHHHhhhCC--CCCH-H----HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 043637 450 LTGYARRGQ---SEEAMTSFSEMQWET--RPSK-F----TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV 519 (693)
Q Consensus 450 ~~~~~~~~~---~~~a~~~~~~~~~~~--~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 519 (693)
....+ .+.|+.-++.+...- .|.. . ...-.+-++...++..++.+.++.+...+.+....+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00111 234555555544322 2321 1 22234556677788888888888888877766667778888
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-------------CCCC
Q 043637 520 EVYTKCCCLEYAIRVFKESSS---------LDVIICNSMILGFCHNERGREALEVFGLMKKEG-------------IKPD 577 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~ 577 (693)
++|...++.++|+.+++.+.. ++......|..++...+++++|..+++++.+.- -.||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 888888888888888887642 123335678888888889999999888888721 1122
Q ss_pred hHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH
Q 043637 578 HIT-FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD 654 (693)
Q Consensus 578 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 654 (693)
-.. +..++..+...|+..+|.+.++++.. .-+-|......+...+...|++.+|+..++... .+.+.......+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 222 33445778889999999999999974 556678888888999999999999999997764 3444556667777
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
++...|++.+|....+.+++..|+++.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888899999999999999999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-14 Score=150.03 Aligned_cols=454 Identities=9% Similarity=-0.042 Sum_probs=225.1
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHH-HH--HHH
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWN-AM--LGA 117 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l--i~~ 117 (693)
.+.+...-+-...+.|++..|...+++..+..+...+.++ .++..+...|+.++|+..+++...|+...+. .+ ...
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3344444444566778888888888888877654333344 6777777778888888888887766444333 33 345
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 197 (693)
+...|++++|+++|+++.+.. +-+...+. .++..+...++.++|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~-----------------------------------gLa~~y~~~~q~~eA 155 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLIS-----------------------------------GMIMTQADAGRGGVV 155 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHH-----------------------------------HHHHHHhhcCCHHHH
Confidence 667788888888888877653 22233333 334444455555555
Q ss_pred HHHHhccCCCCc--ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHhHHHHHHHhcCCCCcchhHHHHHHHHHhc
Q 043637 198 RRMFDDIQNKNA--VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPL-NFTFANALFACSFLSSPYEGMQIHGVIIKID 274 (693)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (693)
++.++.+.+.+. ..+-.++..+...++..+|++.++++.+. .|+ ...+..+..++.+.|-...|.++...
T Consensus 156 l~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----- 228 (822)
T PRK14574 156 LKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE----- 228 (822)
T ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh-----
Confidence 555555543222 22222222222345555577777777764 343 22333334444444433333333222
Q ss_pred CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhC
Q 043637 275 FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRS 354 (693)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (693)
.|+.++-..... + ..+.|.+..+....++..- -. +-
T Consensus 229 -~p~~f~~~~~~~----------------------------l--------~~~~~a~~vr~a~~~~~~~----~~---r~ 264 (822)
T PRK14574 229 -NPNLVSAEHYRQ----------------------------L--------ERDAAAEQVRMAVLPTRSE----TE---RF 264 (822)
T ss_pred -CccccCHHHHHH----------------------------H--------HHHHHHHHHhhcccccccc----hh---hH
Confidence 111110000000 0 0002222221111110000 00 00
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChH
Q 043637 355 LLWKEALDFVFLMRKT-TKDIDQ-VTL----GLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLR 428 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (693)
--.+.|+.-++.+... +..|.. ..| .-.+.++...++..++.+.++.+...+.+....+...+.++|...+..+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0134455555554431 111221 111 1233455666777777777777776666555556667777777777777
Q ss_pred HHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-HHHHHHHHHHhcccCChHHHHHH
Q 043637 429 SARIWFYQMSQRR--------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPS-KFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 429 ~a~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
+|+.++.+..... +......|..++...+++++|..+++++... .|. ...|. ..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~-------~~--------- 407 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYG-------LP--------- 407 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEeccC-------CC---------
Confidence 7766666654421 1222345666666777777777777766542 110 00000 00
Q ss_pred HHHHHHhCCCcch-hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 500 HCFVIRNCYEINV-VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 500 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
.....|+- ..+..++..+...|++.+|++.++++. +-|......+...+...|++.+|++.++.... +.
T Consensus 408 -----~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~ 480 (822)
T PRK14574 408 -----GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LA 480 (822)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hC
Confidence 00011111 112223344445555555555555544 44555555566666666666666666655444 34
Q ss_pred CC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 576 PD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 576 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
|+ ..+......++...+++.+|..+.+.+.+
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 53 24444555555566666666666655553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-12 Score=124.96 Aligned_cols=606 Identities=10% Similarity=-0.019 Sum_probs=370.0
Q ss_pred CccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHHHhCCChhhHHHHH
Q 043637 55 SKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAYTQNGFPGRTLELF 131 (693)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 131 (693)
.+++..|+-++....+.++. ++..|.+-.+.=-..|++..|..+..+--+. +...|--.+ +-...+.|..+.
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHH
Confidence 45778888999999988863 4444544444445668888888877654332 222332222 223344455555
Q ss_pred HHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCccc
Q 043637 132 LDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVS 211 (693)
Q Consensus 132 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 211 (693)
-...+. ++.++..|.- +---..+...-.++++...+. ++.++..|-..+ .....+.|..++.+..+--..+
T Consensus 339 A~Avr~-~P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLWLK---AADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHh-CCCChhhhhh---HHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccch
Confidence 444443 1222222221 111122222233444444443 233444443332 3344455666665554311111
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHH----HHhcCCCchHHHHHHHH
Q 043637 212 WNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVI----IKIDFEGDDVVLGSLTE 287 (693)
Q Consensus 212 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~ 287 (693)
..|.-++++..-++.|..++...++. ++-+...|.+....--..|+.+....+++.- ...|+..+..-|-.=..
T Consensus 410 -~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 410 -MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 11223344455566666666666553 4445556655555555666666665555432 33466666666666666
Q ss_pred HHHHcCChhHHHhhhcCCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHH
Q 043637 288 MYVKCGRLEDARGLLDQPDE------RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWK 358 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 358 (693)
.+-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|....+ .+...|......--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 66666665555544443221 1224666666666677777777777766655 23445555555555567777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhc
Q 043637 359 EALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMS 438 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (693)
+...+|.+....- +-....+.......-..|++..+..++....+.. +.+..++-.-+........++.|..++.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777776542 2223333334444555677777777777776654 3366677777777777777888866666655
Q ss_pred C-CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 439 Q-RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 439 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
. .|....|..-+...--.++.++|++++++..+..+.-...|..+.+.+...++.+.|...|..-.+..+ -.+..|-.
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWll 724 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLL 724 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHH
Confidence 4 355566666666666677778888888777666555556667777777777777777776655444322 24566777
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNV 594 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 594 (693)
|...-.+.|.+-.|..++++.. +.+...|-..|+.-.+.|+.+.|..+..+.++. ++.+...|.--|...-+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 7777778888888888888766 556778888888888999999988888887774 444556777777777777765
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
......++ .+.-|+++.-.+.+.+....++++|.++|++.. .+..-.+|-.+...+..+|.-+.-.+++.+.
T Consensus 804 Tks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555444 345577777888888888889999999998875 2333456666778888889888888899988
Q ss_pred hhcCCCCCcchhhh
Q 043637 673 NELNPWAPFQFKIT 686 (693)
Q Consensus 673 ~~~~p~~~~~~~~l 686 (693)
..-+|.+..-+...
T Consensus 878 ~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 878 ETAEPTHGELWQAV 891 (913)
T ss_pred hccCCCCCcHHHHH
Confidence 88888766555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-14 Score=154.04 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACI 589 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 589 (693)
.+..+...+...|++++|++.++++. +.+...+..++..+...|++++|++.+++..+ +.|+. ..+......+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHH
Confidence 34455666677777777777777655 45666778888888888888888888888888 56764 55556667788
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
..|++++|..+++++++. .|+......+-+.+
T Consensus 439 ~~~~~~~A~~~~~~ll~~---~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR---EPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 888888888888888753 44444433443333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-12 Score=123.40 Aligned_cols=568 Identities=10% Similarity=0.011 Sum_probs=412.3
Q ss_pred CChhhHHHhhccCCCCC---cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHH
Q 043637 91 GNLDDARGLFDEMPERD---GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHG 167 (693)
Q Consensus 91 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 167 (693)
+++.+|+.++..+.+.| +..|-+-.+.--..|++.-|..+...=.+. ++-+...|...+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHH
Confidence 57788999999887654 445665555555677888887777655444 355666665544 4455666777777
Q ss_pred HHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 168 LIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN--K-NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 168 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
...+.- +.++..|-.....= .+...-.+++....+ | ++..|-. .....+.+.|..++.+..+- -|.+
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvec--cp~s 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVEC--CPQS 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHh--ccch
Confidence 776653 33344433322211 122222344544443 2 3334543 34456777788888888763 3433
Q ss_pred HhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC--------CCchhHHHH
Q 043637 245 FTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE--------RNIISWTSI 316 (693)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l 316 (693)
. -|.-++++...++.|..++....+. ++.+..+|.+-...--.+|+.+...+++++... -+...|-.=
T Consensus 410 ~---dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 M---DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 2 2344566667788899998887665 566778888877777889999999888875332 133345444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcc
Q 043637 317 VSGYAISGRIREARELFNEMPE------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDI-DQVTLGLILNVCAGL 389 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 389 (693)
...+-..|..--+..+...... .--.||+.-...|.+.+.++-|..+|....+- -| +...+......--..
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhc
Confidence 5555556665555555555443 33467888888999999999999999887763 34 344454444444567
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 390 SEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
|..+....++......- +.....+......+-..|++..|..++..... .| +...|-.-+........+++|..+|.
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88888889998888763 44555667777788889999999888877766 34 55688888899999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHH
Q 043637 468 EMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVI 544 (693)
Q Consensus 468 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~ 544 (693)
+.... .|+...|.--+...-..++.++|.+++++..+.-.. -...|-.+.+.+.+.++++.|...|.... +..+.
T Consensus 643 kar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 643 KARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 98765 555556655555556678999999999998885433 45678888899999999999999998876 55677
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.|-.+...--+.|+.-+|..++++..-. .| +...|...|+.-.+.|..+.|..+..++.+ .++.+...|..-|..
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHh
Confidence 8888888888999999999999998884 46 568899999999999999999999999986 677788889999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 624 YCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
.-+.++...+.+.+++... |+-.+-.+...+.....+++|...|++.++.+|++.+++..+-.
T Consensus 797 e~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred ccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 9999999999999998863 44455567788888888999999999999999999888765433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-13 Score=133.64 Aligned_cols=546 Identities=11% Similarity=0.058 Sum_probs=358.0
Q ss_pred HhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhcc---CCCCcccHHHHHHHH
Q 043637 143 QITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDI---QNKNAVSWNVIVRRY 219 (693)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~ 219 (693)
........+.+...|+.+.|..++.++++.. +.+...|..|...|-..|+.+++...+--. ...|...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444444455555699999999999999886 557788899999999999999987765333 345667788888888
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHH----HHHHHHHHcCCh
Q 043637 220 LVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLG----SLTEMYVKCGRL 295 (693)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~ 295 (693)
.+.|++++|.-.|.+..+.. +++...+.--...|-+.|+...|...+.++.....+.|..-.. ..+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999988753 2333344455667788899999999888888775533333222 345666777777
Q ss_pred hHHHhhhcCCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccH----------------------
Q 043637 296 EDARGLLDQPDE-----RNIISWTSIVSGYAISGRIREARELFNEMPE----RNVISW---------------------- 344 (693)
Q Consensus 296 ~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~---------------------- 344 (693)
+.|.+.++.... -+...++.++..+.+...++.|......+.. +|..-|
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 888888876554 2445788888888888888888777766543 322211
Q ss_pred H----HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043637 345 N----AMLAGYTRSLLWKEALDFVFLMRKTTKDI--DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL 418 (693)
Q Consensus 345 ~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 418 (693)
. -+.-++...+..+....+...+.+..+.| +...|.-+..++...|.+..|..++..+.....-.+..+|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 1 12223344444444444555555555333 45667788888889999999999999888776666788888899
Q ss_pred HHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhh--------CC-CCCHHHHHHHHHHh
Q 043637 419 DMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQW--------ET-RPSKFTFETLLAAC 487 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~p~~~~~~~ll~~~ 487 (693)
.+|...|..+.|...+...+. .| +...-..|...+.+.|+.++|.++++.+.. .. .|...........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999888877766 34 555667777888889999999999888531 12 45555556666677
Q ss_pred cccCChHHHHHHHHHHHHhC-----CCcc-----------------hhHHHHHHHHHHhhCCHHHHHHHHhcC-------
Q 043637 488 ANISSLEQGKQIHCFVIRNC-----YEIN-----------------VVCRGALVEVYTKCCCLEYAIRVFKES------- 538 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~-----~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~------- 538 (693)
...|+.++-..+...|+... +-|+ ....-.+..+-.+.++......-....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 77888877666666555421 1110 111112222222222222111111111
Q ss_pred -CCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChH---HH-HHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043637 539 -SSLDV----IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHI---TF-HGILLACIHEGNVKLALQFFDSMRCKY 608 (693)
Q Consensus 539 -~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 608 (693)
...+. ..+.-++.++++.+++++|+.+...+.+....- +.. .+ ...+.+++..+++..|...++.|...+
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01112 234567888999999999999999888754221 111 22 334478889999999999999998754
Q ss_pred CCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C-HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 609 GIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP-FNP-T-VPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 609 ~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
+...++ ..|+.......+.|+-.--.+.+.... .++ + ++..-..+......+.+.-|...+-++...+|++|..
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 444332 234434444555555444444444332 222 2 3333333444556778899999999999999999988
Q ss_pred hhhhhhcc
Q 043637 683 FKITTNRF 690 (693)
Q Consensus 683 ~~~l~~~y 690 (693)
-..||-.|
T Consensus 777 nl~lglaf 784 (895)
T KOG2076|consen 777 NLCLGLAF 784 (895)
T ss_pred HHHHHHHH
Confidence 77776443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-13 Score=132.49 Aligned_cols=511 Identities=12% Similarity=0.034 Sum_probs=290.5
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCC
Q 043637 129 ELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKN 208 (693)
Q Consensus 129 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 208 (693)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778888999999999999999999999999999 9999998888889999999999999999887766 788
Q ss_pred cccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH-hcCCCchHHHHHHHH
Q 043637 209 AVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK-IDFEGDDVVLGSLTE 287 (693)
Q Consensus 209 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~ 287 (693)
..+|..|..+|.+.||... ++..++ ....+...++..|.......++..+.- -+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999866 222222 112223333334443333333333211 12233333 2333
Q ss_pred HHHHcCChhHHHhhhcCCCCC--CchhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCHHHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDER--NIISWTSIVSGYAI-SGRIREARELFNEMPE-RNVISWNAMLAGYTRSLLWKEALDF 363 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 363 (693)
...-.|-++.+++++..++.. +. ....+++-+.. ...+++-........+ ++..+|..++.+-...|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 445567777777777666541 11 11112333332 2234444444445555 8888899999988889999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH-----------
Q 043637 364 VFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI----------- 432 (693)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----------- 432 (693)
+.+|.+.|.+.+.+.|..++-+ .++...+..+.+.|.+.|+.|+..|+...+..+...|....+..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAa 303 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAA 303 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHH
Confidence 9999999988888888888766 77888888888889999999998888877766666443222100
Q ss_pred HHHhhcCC---------------------C-------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC----CCCHHHH
Q 043637 433 WFYQMSQR---------------------R-------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET----RPSKFTF 480 (693)
Q Consensus 433 ~~~~~~~~---------------------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~p~~~~~ 480 (693)
+...+... + ...+|. +..-...+|+-++..++-..+..-. ..+...|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 00000000 0 001111 1111222344444444444442111 1122233
Q ss_pred HHHHHHhcccCChHHHHHHHH--HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---------------CCCH
Q 043637 481 ETLLAACANISSLEQGKQIHC--FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---------------SLDV 543 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~ 543 (693)
..++.-|.+.-.......++. ...+. ..+....-.+.+...+. +...+.+.+.... .+-.
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 333333322211111111111 00000 00001111111111111 1111111111111 0111
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH-hcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC-KYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~l~~ 622 (693)
..-+.++..|+..-+..+++..-++.... .-| ..|..||+-+....+.+.|..+.++... +..+..|...+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 23455666666666666665544444332 112 5677788888888888888888877753 1123345566777888
Q ss_pred HHHhcCChHHHHHHHHhCCC----CCC-HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 623 LYCRYGYMKELEDFVNRMPF----NPT-VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.+.+.+....+..++.+++. .+. ......+++..+..|+.+.-.+..+-+.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 88888888888888887751 221 2234445555556665555544444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-13 Score=124.36 Aligned_cols=202 Identities=10% Similarity=0.125 Sum_probs=121.2
Q ss_pred HcCChHHHHHHHHhhcCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRRDK--VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
..|++++|.+.+.+.+..... .+.-.+.-.+-..|+.++|++.|-++..--..+...+..+.+.|....+...|.+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 346667776666666654322 122223334555667777777776654333455556666666666666666666666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
...... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+.- +.+..+..=|..-|....-+++|+..|++..- +.|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 554432 33356666667777777777777666654332 45555555555556666666777777776655 6677
Q ss_pred hHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 578 HITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 578 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
..-|..++ .++.+.|++.+|.++++..-+ .++-|.....-|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 77776666 344556777777777777654 556666666666666665553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-13 Score=122.66 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=266.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH-HHHHHhcCCCCcchhHHHHHHHHHhcCCCchH----HHHHHHHHH
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA-NALFACSFLSSPYEGMQIHGVIIKIDFEGDDV----VLGSLTEMY 289 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~ 289 (693)
|..-|..+....+|+..|+-+.++...|+..... .+-+.+.+..++..|.+++...+..-...+.. +.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344555556677777777777666666654322 22333445556666777766666553333322 333333456
Q ss_pred HHcCChhHHHhhhcCCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----------------CCcccHHHHH---
Q 043637 290 VKCGRLEDARGLLDQPDE--RNIISWTSIVSGYAISGRIREARELFNEMPE----------------RNVISWNAML--- 348 (693)
Q Consensus 290 ~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~l~--- 348 (693)
.+.|+++.|+.-|+...+ |+..+--.|+-++..-|+.++..+.|.+|.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 677777777777776544 4554444455555666777777777776653 1111111111
Q ss_pred --HHHHhCC--CHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 349 --AGYTRSL--LWKEALDFVFLMRKTTKDIDQV-TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 349 --~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
..+-+.+ +.++++-.--++..--+.|+-. .|...+...-.....+.| ...--.-...|.+
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la---------------~dlei~ka~~~lk 431 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA---------------IDLEINKAGELLK 431 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh---------------hhhhhhHHHHHHh
Confidence 1111111 1112221111222111222211 011111111111111111 1111112234677
Q ss_pred cCChHHHHHHHHhhcCCCChh---hHHHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKV---SWNAV--LTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQ 498 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 498 (693)
.|+++.|++++.-...+.+.. +-+.| +..+.--.++..|.+.-+.......-+......-.+.....|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 888888877666555432221 11222 2222223355666666655554444444444444455566788999988
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 499 IHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
.+++.....-......|+ +.-.+...|++++|++.|-++- ..+..+.-.+...|-...+...|++++-+... +.
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--li 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence 888887754443333343 2234677888999988886644 66777777788888888888899988877766 55
Q ss_pred C-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHH
Q 043637 576 P-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIF 653 (693)
Q Consensus 576 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 653 (693)
| |+....-|...|-+.|+-.+|.+..-+--+ -++-+.++...|...|....-+++|+.+|++.. .+|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 5 567788888899999998888888776542 455678888888888888888999999998875 688888888888
Q ss_pred HHHH-hcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 654 DKCR-KNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 654 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
..|. +.|++.+|...|+.+....|+|-.-+-.|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 7774 578999999999999998888776554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-10 Score=106.76 Aligned_cols=447 Identities=10% Similarity=0.068 Sum_probs=267.5
Q ss_pred hcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhH
Q 043637 189 GKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGM 264 (693)
Q Consensus 189 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 264 (693)
...+++..|.++|++... .+...|--.+..-.++.....|..+++..... -|.+. .|-..+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 344566667777776653 45555666666667777777777777776553 23322 2223333334456666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 043637 265 QIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQP--DERNIISWTSIVSGYAISGRIREARELFNEMPE--RN 340 (693)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 340 (693)
++|+.-.+. +|+...|.+.++.-.+...++.|..+++.. ..|++..|.....--.++|....|..+|+...+ .|
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 666665443 566777777777666777777666666652 345666665555555566666666666655433 11
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc--hhHHHHHH
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN--IFVSNALL 418 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 418 (693)
...-..+..+++ .-=.....++.|.-+++.....- +.+ ...|..+.
T Consensus 240 d~~~e~lfvaFA-------------------------------~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 240 DEEAEILFVAFA-------------------------------EFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHH
Confidence 111111111111 11112223334444444433321 111 22333333
Q ss_pred HHHHHcCChHHHHHH--------HHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHH-------HHH
Q 043637 419 DMYRKCGNLRSARIW--------FYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKF-------TFE 481 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~--------~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-------~~~ 481 (693)
..--+-|+....... +++.+. .| |-.+|--.+..-...|+.+...++|++.....+|-.. .|.
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 333333443222221 112222 23 5567777777777888888899999888776655321 222
Q ss_pred HHHHHh---cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----HhhCCHHHHHHHHhcCC--CCCHHHHHHHHHH
Q 043637 482 TLLAAC---ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY----TKCCCLEYAIRVFKESS--SLDVIICNSMILG 552 (693)
Q Consensus 482 ~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~ 552 (693)
-+=-+| ....+++.+.++++..++. ++....++.-+--+| .++.++..|.+++-... -|...++...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 222222 3467888999999988882 333445555444343 46788899999988766 6777888888888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 631 (693)
-.+.++++.+..++++.++ ..| |..+|......-...|+.+.|..+|+-+.....+.--...|...|+.-...|.++
T Consensus 447 ElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 8899999999999999999 566 4588888887778889999999999988863222222334555566666799999
Q ss_pred HHHHHHHhCC-CCCCHHhHHHHHHHHH-----hcC-----------CccHHHHHHHHHhh
Q 043637 632 ELEDFVNRMP-FNPTVPMLRKIFDKCR-----KNG-----------YATLGEWAARRLNE 674 (693)
Q Consensus 632 ~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 674 (693)
+|..+++++. ..+-.+.|.++...-. ..| +...|..+++.+..
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999998886 3445556666554433 223 45667777777655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=127.91 Aligned_cols=281 Identities=11% Similarity=-0.008 Sum_probs=215.2
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHH
Q 043637 391 EIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-----RDKVSWNAVLTGYARRGQSEEAMTS 465 (693)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 465 (693)
+..+|...|.. ....+.-...+...+..+|...+++++|++.|...... .+...|++.+..+.+ +-++..
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 34556666665 32233334466667778888888888886666665542 266677777665533 223333
Q ss_pred HHH-hhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH
Q 043637 466 FSE-MQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI 544 (693)
Q Consensus 466 ~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (693)
+.+ +....+..+.+|..+.++|+-+++.+.|.+.|++.+..+.. ....|+.+.+-+.....+|.|...|......|+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 333 33333777889999999999999999999999998874432 6788888888888999999999999998877776
Q ss_pred HHH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 545 ICN---SMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 545 ~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
.|| .+...|.+.++++.|+-.|++..+ +.|. .+....+...+-+.|+.|+|+++++++.. --+.|+..-...
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 555 467789999999999999999999 8885 46677777899999999999999999984 334455555667
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 621 IKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
+..+...++.++|+..|++++ .+.+...+..++..|.+.|+.+.|..-+--+..++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788999999999999999986 4556667778889999999999999999999999996544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=137.10 Aligned_cols=252 Identities=11% Similarity=0.087 Sum_probs=108.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR---R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS 491 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 491 (693)
.+...+.+.|++++|++++.+.... | +...|..+.......++.++|.+.++++...++-+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4466777788888888877544332 2 444555556666678888888888888877764456667666666 6888
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
++++|.+++....+.. +++..+..++..+.+.++++++..+++... +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887766543 455667778888888899998888887743 457778888999999999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 043637 567 GLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FN 643 (693)
Q Consensus 567 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 643 (693)
++..+ ..|+ ......++..+...|+.+++.++++..... .+.|+..+..+..+|...|+.++|+.++++.. .+
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999 6785 577888999999999999999999988753 36677788899999999999999999999885 45
Q ss_pred CCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 644 PTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 644 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.|+.....+..++...|+.++|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5777888899999999999999999988875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-11 Score=115.72 Aligned_cols=276 Identities=9% Similarity=-0.033 Sum_probs=185.9
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 408 SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
.-+..+.....+-+...+++.+..++..+.+.. ++...+..-|.++...|+..+-..+=.++....+....+|.++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 334455555566666677777776666666652 355556666667777777777777777776666666777777777
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREA 562 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 562 (693)
-|...|+..+|++.|.+....... -...|-.+.+.|.-.+..|+|...+.... +..-..+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 777778888888887776654333 23456667777777777777777765443 11111222344456677788888
Q ss_pred HHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 563 LEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKY-----GIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 563 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
.+.|.+... +.| |+..++-+.-.....+.+.+|..+|+...+.- .......+++.|+.+|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887777 666 46777777767777788888888887776210 0111445677788888888888888888
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+++.. .+.+..++.+++..|...|+++.|...+-+++-++|++..+-..|
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 88764 466777777888888888888888888888888888775443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-10 Score=108.52 Aligned_cols=358 Identities=11% Similarity=0.019 Sum_probs=197.6
Q ss_pred CCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc-HHHHHHHHHhC
Q 043637 276 EGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS-WNAMLAGYTRS 354 (693)
Q Consensus 276 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~ 354 (693)
..|...+-...-.+.+.|..+.|++.|......-+..|.+.+....-..+.+.+..+.......+... ---+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33444433344445566777777777766555444445444433333333333333322222211111 01123344444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCChHHHHH
Q 043637 355 LLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDY--SSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
.+.+++..-.+.+...|..-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++- .+..+-.-+ -
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skLs-~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKLS-Y 317 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHHH-H
Confidence 56666766666666666555554444444455566777777777777776531 114445554442 222211111 1
Q ss_pred HHHhh--cCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 043637 433 WFYQM--SQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI 510 (693)
Q Consensus 433 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (693)
+-... +.+--+.|...+.+-|.-.++.++|...|++..+.++.....++.+..-|...++...|.+-++..++.++.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-
Confidence 11111 111123344455556666677777777777776666666666666777777777777777777777765443
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA 587 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 587 (693)
|-..|-.|.++|.-.+...-|+-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 56666667777777777777777776654 5667777777777777777777777777776654 2244666777777
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCChhH---HHHHHHHHHhcCChHHHHHHHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKY--GIIPQLEH---YECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
|-+.++..+|.+.+++..+.. .-..+..+ ---|..-+.+.+++++|.....
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 777777777777766665421 11112212 1224444556666666665443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-11 Score=119.72 Aligned_cols=249 Identities=10% Similarity=-0.069 Sum_probs=174.7
Q ss_pred HHcCChHHHHHHHHhhcCC-CChhhHH--HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQR-RDKVSWN--AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQ 498 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 498 (693)
.+.|+.+.|...+.++... |+..... .....+...|++++|.+.++++....+-+...+..+...+...|+++.|..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556666665555555442 3322221 223455666777777777777666655556666666677777777777777
Q ss_pred HHHHHHHhCCCcchh-------HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 499 IHCFVIRNCYEINVV-------CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 499 ~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
++..+.+.+..++.. .|..++.......+.+...++++..+ +.++.....+...+...|+.++|.+.+++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777654432221 22223333334445666677777766 56778888999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 569 MKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
..+ ..||.... ++.+....++.+++++..+...+ ..+-|+..+..+.+.+.+.|++++|.+.|++.. ..|+..
T Consensus 289 ~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 289 GLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 888 45555322 23444566999999999999885 455567778889999999999999999999886 568888
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.+..+...+.+.|+.++|...+++.+.+-
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88889999999999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-11 Score=119.25 Aligned_cols=255 Identities=8% Similarity=-0.072 Sum_probs=167.3
Q ss_pred HHHHHHcCChHHHHHHHHhhcCC-CChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 418 LDMYRKCGNLRSARIWFYQMSQR-RDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 418 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
.....+.|+.+.|...+.+.... |+.. ..-.....+...|+++.|.+.++.+.+..+-+...+..+...+...|+++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 34445556666665555554332 3221 22223555666677777777777776665555566667777777777777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHH---H----hhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVY---T----KCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
.+.+.+..+.+.+..........-..++ . .....+.....++..+ +.++..+..++..+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777777777665432222211111111 1 1222334444555554 2478888899999999999999999
Q ss_pred HHHHHHHCCCCCChHH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--
Q 043637 565 VFGLMKKEGIKPDHIT---FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR-- 639 (693)
Q Consensus 565 ~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 639 (693)
.+++..+ ..||... .....-.....++.+.+.+.++...+.....|+.....++.+.+.+.|++++|.+.|++
T Consensus 285 ~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 9999998 4565532 12222333456788889999988875322222226677899999999999999999993
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 640 M-PFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 640 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
. ...|++..+..+...+.+.|+.++|.+.+++.+.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 3578888888999999999999999999999866
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-09 Score=106.73 Aligned_cols=574 Identities=11% Similarity=0.066 Sum_probs=350.5
Q ss_pred hhHHHHHHhccCChhhHHHhhccCCC--CCcccHH----HHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 80 LNRAIECYGKCGNLDDARGLFDEMPE--RDGGSWN----AMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
+..+...|.++|-...|++.+..+.. +..++-+ --+..|...-.++.++++++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56778888899999999988877643 1111111 11234445557888999999999988888877777776666
Q ss_pred hccCChHHHHHHHHHHHHh-----------CCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC----------------
Q 043637 154 AEELELGVSKQLHGLIVKR-----------GFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---------------- 206 (693)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 206 (693)
...=..+...++|+..+.. ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 6555555556666655432 3466777888899999999999999887655320
Q ss_pred ---C------------Cccc--H----HHHHHHHHhcCCchHHH-------------HHHHHHH--HCCCCCCHHhHHHH
Q 043637 207 ---K------------NAVS--W----NVIVRRYLVAGNGKEAV-------------VMFFKML--REDIRPLNFTFANA 250 (693)
Q Consensus 207 ---~------------~~~~--~----~~li~~~~~~~~~~~a~-------------~~~~~m~--~~g~~p~~~~~~~l 250 (693)
| |.+. | .-.|..|.+.=++...- ++.+.+. -.|..| ...+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~deL 844 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDEL 844 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHHH
Confidence 1 1111 1 11234444432222111 1111111 123333 3445
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHH-Hh---hhcC------CCCCCc----------
Q 043637 251 LFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDA-RG---LLDQ------PDERNI---------- 310 (693)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a-~~---~~~~------~~~~~~---------- 310 (693)
..-+.+++++..-...++.....|.. |..++++|...|...++-.+- ++ .++. ..++|+
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 55666777777777777777777754 777888887777765543321 00 0110 001111
Q ss_pred -------------hhHHHHHHHHHhcCCHHHHHHHHh-----------hCC-----C-CCcccHHHHHHHHHhCCCHHHH
Q 043637 311 -------------ISWTSIVSGYAISGRIREARELFN-----------EMP-----E-RNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 311 -------------~~~~~li~~~~~~g~~~~A~~~~~-----------~~~-----~-~~~~~~~~l~~~~~~~~~~~~a 360 (693)
+.|....+-+.+..+.+-=.+++. ... + .|+..-+..+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 123333333333333332222221 111 1 3555566677788888888888
Q ss_pred HHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchhhHHHHHHHHHHhC-----------------------CCCchhHHH
Q 043637 361 LDFVFLMRKTTKDI--DQVTLGLILNVCAGLSEIKMGKEVHGFIHRND-----------------------YSSNIFVSN 415 (693)
Q Consensus 361 ~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~ 415 (693)
++++++..-..-.- +...-+.++-...+ -+...+.++.+.+.... +..+....+
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88888775322111 11111222221111 12222222222222111 112222222
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
.|++ .-+.++.| ..+-+.. ..+..|+.+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+++
T Consensus 1083 VLie---~i~~ldRA-~efAe~~--n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRA-YEFAERC--NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHH---HhhhHHHH-HHHHHhh--CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHH
Confidence 2222 22344444 2222222 2446799999999999999999988766 4567789999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
-.+++...++..-+|... +.|+-+|++.+++.+-++++. -|+..-...+..-|...|.++.|.-++..
T Consensus 1152 Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 999999888876666554 578889999999888777654 46776677778888888888887766653
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043637 576 PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDK 655 (693)
Q Consensus 576 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 655 (693)
...|..|...+...|++..|.+.-+++ .+..+|..+-.+|...+.+.-|.-.=-. .--...-+..++..
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~--iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQICGLN--IIVHADELEELIEY 1288 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhcCce--EEEehHhHHHHHHH
Confidence 345777888888888888887765544 2566788888888877776554321000 11123345568888
Q ss_pred HHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcccCC
Q 043637 656 CRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFDRY 693 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 693 (693)
|..+|-+++-+..+|..+-++-.+.+.|.-|+-+|++|
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988999999999999987
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-10 Score=109.25 Aligned_cols=356 Identities=10% Similarity=-0.007 Sum_probs=258.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHH--HHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGL--ILNVC 386 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~ 386 (693)
|...+-.....+.+.|....|++.|......-+..|.+.+....-.-+.+.+..+. .|...|...+.. +..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHH
Confidence 34444445556677888899999988877655555655444333222322222221 122222222222 23355
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C----ChhhHHHHHHHHHhcCChHH
Q 043637 387 AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R----DKVSWNAVLTGYARRGQSEE 461 (693)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~ 461 (693)
......+++.+-.......|++.+...-+....+.....+++.|+..|++.... | |..+|+.++-. +..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s-- 313 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS-- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--
Confidence 556678888888888888999888888888888888999999999999998875 3 67788777643 33221
Q ss_pred HHHHHHHh-hhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 462 AMTSFSEM-QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 462 a~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
.+..+.+- ..-.+-.+.|..++.+-|+-.++.++|..+|++..+.+.. ....|+.+.+-|....+...|.+.+....
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 12222222 2222445568888888999999999999999999987655 56778889999999999999999999766
Q ss_pred --CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 043637 540 --SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEH 616 (693)
Q Consensus 540 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 616 (693)
+.|-..|-.+.++|.-.+-+.-|+-.|++..+ ++| |...|.+|..+|.+.++.++|++.|..... .-..+...
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~ 468 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSA 468 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHH
Confidence 67788999999999999999999999999999 788 578999999999999999999999999985 33446678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-------CCC--HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMPF-------NPT--VPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+..|.+.|.+.++.++|...+++... ..+ ....--|...+.+.+++++|.........-+|.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 89999999999999999998876531 111 112222555666788999988877777665553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-14 Score=133.81 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=113.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHH-HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTF-ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
.+...+.+.|++++|++++++..... +|+...| ..+...+...++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34667888999999999997654444 4555444 44555667789999999999999986655 56667777777 789
Q ss_pred CCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+++++|.++++... .+++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998765 5667778888999999999999999999987643 23466778888899999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
++.+. .+.|+.....++..+...|+.+++..+++... .+.++..+..+..++...|+.++|...++++.+.+|+|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99852 33357788899999999999999888887764 245666788899999999999999999999999999999
Q ss_pred cchhhhhhccc
Q 043637 681 FQFKITTNRFD 691 (693)
Q Consensus 681 ~~~~~l~~~y~ 691 (693)
.....++.++.
T Consensus 249 ~~~~~~a~~l~ 259 (280)
T PF13429_consen 249 LWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHHHT
T ss_pred ccccccccccc
Confidence 99999998875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-11 Score=119.00 Aligned_cols=276 Identities=11% Similarity=0.004 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHH--HHHHHHHHHcCChHHHH
Q 043637 354 SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVS--NALLDMYRKCGNLRSAR 431 (693)
Q Consensus 354 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 431 (693)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555544433321111 111222223334555666666666555443 2332221 12355667777777777
Q ss_pred HHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHH--------HHHHHHHHhcccCChHHHHHHHH
Q 043637 432 IWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKF--------TFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 432 ~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
..+.+.... | +......+...|.+.|++++|.+++..+.+....+.. +|..++.......+.+...++|+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777666552 3 4556667777777788888888888887776622222 23333333334445555555665
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH- 578 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 578 (693)
.+.+. .+.++.....+...+...|+.++|...+++.. ++|.. -.++.+....++.+++++..++..+ ..|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 55432 23466777788888888888888888887766 34442 2234444566899999999999888 46754
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|...+++.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5577777999999999999999999874 5799888889999999999999999988865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-11 Score=111.25 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=137.1
Q ss_pred HcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
-.|+.-.|...+...+. .| +...|-.+...|....+.++.+..|.+.....+.+..+|..-.....-.++++.|..=|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34566666555555554 22 22336666677777777777777777777766666667766666666677777777777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
++.++..+. ++..|-.+.-+..+.++++++...|++.. +..+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPR 494 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccc
Confidence 777764433 45555556666667777777777777766 55566777777777788888888888877777 4454
Q ss_pred h---------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 578 H---------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 578 ~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
. ..-..++..-. .+++..|.++++++.+ +.|. ...|..|...-.+.|+.++|+++|++.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 11111221112 2677777777777763 2332 344677777777888888888888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-09 Score=102.48 Aligned_cols=401 Identities=10% Similarity=0.008 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHcCChhHHHhhhcCCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCC
Q 043637 281 VLGSLTEMYVKCGRLEDARGLLDQPDE--R-NIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSL 355 (693)
Q Consensus 281 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 355 (693)
.|-..+.+-.++..+..|..+++.... | -...|-..+..--..|++..|.++|+.-.+ |+...|++.|..=.+-+
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Confidence 333444444455555555555544332 1 112333444444445666677777776554 77788888888777778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN-D-YSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
.++.|..+|++..- +.|+..+|......=-+.|....+..+++...+. | -..+...+.+....-.++..++.|.-+
T Consensus 189 eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 189 EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887765 4577777777777667778888888887776642 1 122334555666655667778888555
Q ss_pred HHhhcCC-CC---hhhHHHHHHHHHhcCCh---HHHHHH-----HHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 434 FYQMSQR-RD---KVSWNAVLTGYARRGQS---EEAMTS-----FSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 434 ~~~~~~~-~~---~~~~~~l~~~~~~~~~~---~~a~~~-----~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
+.-.+.. |. ...|..+...=-+-|+. ++++-- ++.+...++-|-.++--.++.-...|+.+...++++
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555543 22 23344444333344543 333322 344455557777888888888888999999999999
Q ss_pred HHHHhCCCcch-hHHHHHHHH--------HHhhCCHHHHHHHHhcCC---CCCHHH----HHHHHHHHHhCCChHHHHHH
Q 043637 502 FVIRNCYEINV-VCRGALVEV--------YTKCCCLEYAIRVFKESS---SLDVII----CNSMILGFCHNERGREALEV 565 (693)
Q Consensus 502 ~~~~~~~~~~~-~~~~~l~~~--------~~~~~~~~~A~~~~~~~~---~~~~~~----~~~l~~~~~~~g~~~~A~~~ 565 (693)
+.+..-++... ..+...+-. =....+.+.+.++++... +....+ |.....-..++.+...|.++
T Consensus 347 rAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 347 RAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99875333221 222222211 124678888999998765 444444 44445555688899999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 043637 566 FGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPT 645 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (693)
+...+. .-|...+|...|..-.+.+.+|....++++..+ -.+-+..+|......-...|+.+.|..+|+-...+|.
T Consensus 427 LG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 427 LGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 998776 789999999999999999999999999999985 2334567788777777889999999999998876663
Q ss_pred H----HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 646 V----PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 646 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
. ..|.+.++.-...|.+++|...|+++++..+ +...+.+.++
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~ 548 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAK 548 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHH
Confidence 2 3677777777789999999999999999888 4446666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-10 Score=117.02 Aligned_cols=283 Identities=12% Similarity=-0.012 Sum_probs=187.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQV-TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSAR 431 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 431 (693)
..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777766655443 33322 222334455566777777777766654331222223344566777788888887
Q ss_pred HHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH-HHHHh---cccCChHHHHHHHHHHHH
Q 043637 432 IWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET-LLAAC---ANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 432 ~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~-ll~~~---~~~~~~~~a~~~~~~~~~ 505 (693)
..+...... | +...+..+...+.+.|++++|.+.+..+.+.+.++...+.. -..++ ...+..+.+.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777663 4 55567777888888888888888888888776333333321 11111 222223333344544444
Q ss_pred hCCC---cchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 506 NCYE---INVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVII---CNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 506 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
.... .+...+..+...+...|+.++|.+.+++.. .||... ...........++.+.+.+.+++..+ ..|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 3332 367788888889999999999999998876 344431 12222233445778889999998888 4675
Q ss_pred hH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 578 HI---TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 578 ~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.. ...++.+.|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 456778999999999999999996443 366899999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-10 Score=106.96 Aligned_cols=217 Identities=12% Similarity=-0.023 Sum_probs=161.0
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
+.-.|+.-.|.+-|+......+.+...|--+..+|....+.++....|.+..+.+.. ++.+|..-.+++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 344678888888888887776333333666777788888999999999988886654 6777888888888888999999
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 533 RVFKESSS---LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 533 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.-|++... .+...|-.+..+.-+.+++++++..|++.+.+ ++--+..|+.....+..+++++.|.+.++..++
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 99988773 34456666666677888999999999998884 333458888888999999999999999998874
Q ss_pred CCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 610 IIPQ---------LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 610 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+.|+ +.+...++-.-. .+++.+|+.++++.. .+.....+..+...-..+|+.++|++.|++...+
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3343 112222222222 388889999998885 3344557778888888899999999999887664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-08 Score=96.00 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCC--C----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-----------
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRR--D----KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-R----------- 474 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~----------- 474 (693)
.+..+.+.|-..|+++.|..++.+...-| . ..+|..-...=.++.+++.|+++.+...... .
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 45666677777777777755555555533 1 1234444444555666777777666653222 1
Q ss_pred C------CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCCHH
Q 043637 475 P------SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLDVI 544 (693)
Q Consensus 475 p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~ 544 (693)
+ +...|...++.-...|-++....+++++++..+. ++.+.......+....-++++.+.+++.. .|++.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1123444445455567888888899999886554 33333334444556667899999999876 35543
Q ss_pred -HHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCChHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 545 -ICNSMILGFCHN---ERGREALEVFGLMKKEGIKPDHITFHGIL--LACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 545 -~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.|+..+..+.+. ...+.|..+|++.++ |++|...-+..|+ ..--+.|....|+.+++++.. ++++
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~ 618 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKE 618 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCH
Confidence 777776665542 358999999999999 7887653333332 333455777888888888763 4444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-11 Score=117.77 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC--CCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND--YSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
+..+|+..|..+.+. +.-.......+-.+|...+++++++++|+.+.+.. ..-+..+|.+.+-.+-+. ++-. -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v~Ls-~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--VALS-YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--HHHH-HH
Confidence 455666666663332 22223444455566777777777777777766532 122455666655433221 1111 12
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 043637 434 FYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN 511 (693)
Q Consensus 434 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (693)
-.+.+. +..+.+|.++..+|.-+++.+.|++.|++..+..+-...+|+.+..-+.....+|.|...|+..+. .+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 222222 235678999999999999999999999998877676888888888888888899999988887765 45
Q ss_pred hhHHHH---HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 043637 512 VVCRGA---LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGI 584 (693)
Q Consensus 512 ~~~~~~---l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 584 (693)
+..|++ +.-.|.+.++++.|+-.|++.. +.+.+....+...+.+.|+.++|+.++++... +.| |+.+-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 666665 4567889999999999999877 55667777788888999999999999999988 566 55565666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..+...+++++|+..++++++ -++.+...|..+++.|.+.|+.+.|+.-|.-+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 7788888999999999999974 444456678888999999999999998876553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-09 Score=103.28 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=157.1
Q ss_pred HHHHcCChHHHHHHHHhhcC-------CCC-----h-----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 420 MYRKCGNLRSARIWFYQMSQ-------RRD-----K-----VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~-------~~~-----~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
.+...|++.+|++.+...+. ..| . .+--.+...+...|+.++|..++.......++|......
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 44556677777666666521 111 1 112335566778999999999999998887666544333
Q ss_pred HHH---HhcccCChHH--HHHHHHHHHH-----------hCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC-HHH
Q 043637 483 LLA---ACANISSLEQ--GKQIHCFVIR-----------NCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD-VII 545 (693)
Q Consensus 483 ll~---~~~~~~~~~~--a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 545 (693)
..+ +...-.++-. +...++.... ....-....-+.++..| .+..+.+.++........ ...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~ 341 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESL 341 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHH
Confidence 322 2222222211 1111111111 00011111122333333 355667777777666322 233
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCC
Q 043637 546 CNSMILGFC--HNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFD--------SMRCKYGIIPQ 613 (693)
Q Consensus 546 ~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~p~ 613 (693)
+..++..+. +...+..|.+++...-+. .|.. ......+......|+++.|++++. .+.+ .+..|
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P- 417 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP- 417 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh-
Confidence 444444332 223577888888887773 4544 445555678889999999999999 4442 34444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHH----hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP-----FNPTVP----MLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.+...++..|.+.++.+-|..++++.. ..+... ++...+..-.++|+.++|...++.+++++|++...+.
T Consensus 418 -~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 418 -GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred -hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 445667788888888777777766552 112222 3334444445789999999999999999999999988
Q ss_pred hhhhcccC
Q 043637 685 ITTNRFDR 692 (693)
Q Consensus 685 ~l~~~y~~ 692 (693)
.|.-.|++
T Consensus 497 ~lV~a~~~ 504 (652)
T KOG2376|consen 497 QLVTAYAR 504 (652)
T ss_pred HHHHHHHh
Confidence 88777764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-09 Score=102.43 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhcc--CCCCCcccHHHHHH
Q 043637 39 PVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDE--MPERDGGSWNAMLG 116 (693)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~ 116 (693)
..+..-+..+++-+..+.++..|.-+-++....+-.|+.. --+..++.-.|+.+.|..+... +.+.|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3456778888888888889999998888887776444433 4478888888999998888754 45678888888888
Q ss_pred HHHhCCChhhHHHHHHH
Q 043637 117 AYTQNGFPGRTLELFLD 133 (693)
Q Consensus 117 ~~~~~~~~~~a~~~~~~ 133 (693)
.+.+..+|+.|..++..
T Consensus 91 ~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGR 107 (611)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998873
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-09 Score=96.83 Aligned_cols=400 Identities=12% Similarity=0.006 Sum_probs=260.4
Q ss_pred chHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHhcCC-HHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 043637 278 DDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAISGR-IREARELFNEMPERNVISWNAMLAGYTRSL 355 (693)
Q Consensus 278 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 355 (693)
+.......+.+|...++-+.|...+.+.++. .....+.++.-+-+.|- -.++.--+.+....-+..... |.+....+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence 3444556677788888899888888887764 33334444443333332 212211111111111111111 11111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--hcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVC--AGLSEIKMGKEVHGFIHR-NDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+..+...=..|....+.|...+....+.++ +..++...+...+-.+.. .-++.|......+.+++...|+..+|+.
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 001111112233334455555555555544 344555555554444443 4567789999999999999999999988
Q ss_pred HHHhhcC-CCChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 043637 433 WFYQMSQ-RRDKV-SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI 510 (693)
Q Consensus 433 ~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (693)
.|.+... .|+.. ......-.+.+.|+.+....+...+.....-....|..-+......++++.|..+-++.++.+..
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r- 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR- 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-
Confidence 8877655 34332 33444455677888888887777775544333333444445556678899999888888775433
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-H
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-L 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~ 586 (693)
+...+-.-...+...++.++|.-.|.... +-+..+|..|+.+|...|++.+|.-+-+..... +.-+..+...+. .
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 33344344456788899999999998765 567889999999999999999999888876663 334556666553 3
Q ss_pred HH-hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCcc
Q 043637 587 AC-IHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 587 ~~-~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 663 (693)
.| .....-++|.++++... .++|+ ......+...+.+.|+.++++.++++.. ..+|....+.+++.++..+.+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 33 33445588999998775 45665 3445667788899999999999999875 6889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchh
Q 043637 664 LGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~~~~~~~ 684 (693)
+|..-|..++.++|++..+.-
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHHHHhcCccchHHHH
Confidence 999999999999998876654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-09 Score=97.91 Aligned_cols=282 Identities=10% Similarity=-0.044 Sum_probs=172.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 354 SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 354 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
.|+|.+|.+...+-.+.+-.|- ..|..-..+.-..|+.+.+..++.+.-+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5667777776666555443332 233344444555555555555555555443344444444444555555555555444
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch-
Q 043637 434 FYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV- 512 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 512 (693)
+.+ +...++-+........++|.+.|++.....++..+.+.+.-.+.
T Consensus 176 v~~--------------------------------ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 176 VDQ--------------------------------LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHH--------------------------------HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 444 44443333444444444444444444444444444444333222
Q ss_pred ------hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHH
Q 043637 513 ------VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHG 583 (693)
Q Consensus 513 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 583 (693)
.++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++..|+ -.
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~ 299 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LC 299 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HH
Confidence 123333333333333444444555555 45666777788888888889999988888888777766 22
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCc
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 662 (693)
..-.+.+-++.+.-++..++-... .+-++..+..|.+.|.+.+.+.+|...|+... ..|+...+..+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 224566778888877777777653 33444778888888999999999999888664 678888888888999999999
Q ss_pred cHHHHHHHHHhh
Q 043637 663 TLGEWAARRLNE 674 (693)
Q Consensus 663 ~~A~~~~~~~~~ 674 (693)
.+|.+..+..+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999888888775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-07 Score=88.51 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN-VVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 523 (693)
.|...+..--..|-++....+++++......++........-+....-++++.+++++-+..-..|. ...|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 3444444444455555555666665554422222222222223333445555555554443211222 233444443332
Q ss_pred h---hCCHHHHHHHHhcCC---CCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc
Q 043637 524 K---CCCLEYAIRVFKESS---SLDVI--ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGN 593 (693)
Q Consensus 524 ~---~~~~~~A~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~ 593 (693)
+ ..+++.|..+|+... +|.-. .|-....---+.|-...|++++++.... +++.. ..|+..|.--...=-
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 2 234666666666544 22111 2222222223445566666666665443 44432 456665533322222
Q ss_pred HHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEH---YECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
+.....+++++++. -|+... .-.+...=.+.|..+.|..++.-.. -..+...|++.-..-.++|+-+-
T Consensus 638 v~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 638 VPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 33445555555542 233222 2223344455666666666665443 12234466666666666666333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-09 Score=95.95 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=101.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHHcCChH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDI-DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN---IFVSNALLDMYRKCGNLR 428 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 428 (693)
-+++.++|.+.|-+|.+. .| +..+--++-+.+-+.|.++.|.++...+.++.--+. ......|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356778888888888762 12 112222344455555666666666555554321111 122233444455555555
Q ss_pred HHHHHHHhhcCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCH----HHHHHHHHHhcccCChHHHHHHHH
Q 043637 429 SARIWFYQMSQRR--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSK----FTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 429 ~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|+.+|.....+| -..+...|+..|.+..+|++|+++-+++.+.+ .+.. ..|.-+...+....+++.|...++
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555554444433 22344445555555555555555555554443 2221 233444444444455555555555
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+..+.+.+ ....--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|...|+.++....+.++.+
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55443322 2222223334444445555555555444422221 334444445555555555555544444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-09 Score=93.53 Aligned_cols=261 Identities=10% Similarity=-0.025 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHhhCCCCCcccH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhcccchhhHH
Q 043637 323 SGRIREARELFNEMPERNVISW---NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQV---TLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 396 (693)
.++.++|.+.|-+|.+.|..|+ -+|.+.|.+.|..+.|+.+-..+.+..--+... ..-.+-.-|-..|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555555333333 234445555555555555555544321111100 1111222334445555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC---CC----hhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 397 EVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR---RD----KVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
.+|..+.+.+ ..-......|+..|-...+|++|++.-.+...- +. ...|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555555432 122233444555555555555555544433331 11 012334444444455555555555555
Q ss_pred hhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHH
Q 043637 470 QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICN 547 (693)
Q Consensus 470 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~ 547 (693)
.+..+.....--.+.+.....|+++.|.+.|+.+.+.++..-+.+...|..+|...|+.++....+.++. .++...-.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 4444333333334444555555555555555555555555555555555555555555555555555444 23333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+...-....-.+.|...+.+-.. -+|+...+..++.
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~ 323 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHH
Confidence 333333333333444444333333 2455555555553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-09 Score=97.70 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=89.4
Q ss_pred cCChhHHHhhhcCCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHhCCCHHHHHHHH
Q 043637 292 CGRLEDARGLLDQPDER---NIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAMLAGYTRSLLWKEALDFV 364 (693)
Q Consensus 292 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 364 (693)
.|++.+|+++..+..+. ....|..-+.+--+.|+.+.+-..+.+..++ +...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46677666665543332 1122333334444455555555555554441 2222333334444555555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChh
Q 043637 365 FLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKV 444 (693)
Q Consensus 365 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (693)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+...- .+ ...
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~------------------~l-------e~~ 230 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA------------------RL-------EQQ 230 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH------------------HH-------HHH
Confidence 555443321 2223333344444444444444444444443322211110 00 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN 511 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (693)
+|+.++.-....+..+.-...|+.....-+.++..-.+++.-+...|+.++|.++..+..+.+.+|+
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 4555555555555555555566655444444444445555556666666666666666666555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-06 Score=88.89 Aligned_cols=132 Identities=14% Similarity=0.222 Sum_probs=98.3
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 526 CCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+.++.|.++-++... +..|..+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.|++-..++..++
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444444433 34689999999999999999877643 2356789999999999999999999998887
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++ ..+|..+ +.|+-+|.+.++..+-++++ .-|+..-...+++-|...|.++.|+-.|..+
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 64 6677666 67999999999998876665 3456666677777777777777776665543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-07 Score=94.68 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIK 622 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 622 (693)
.|......+.+.++.++|...+.+... +.| ....|......+...|.+++|.+.|.... .+.| ++....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 566677788888999999988888877 556 45777777788889999999999999886 4555 4778899999
Q ss_pred HHHhcCChHHHHH--HHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 623 LYCRYGYMKELED--FVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 623 ~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
++.+.|+..-|.. ++..+. .+.+...|..++..+.+.|+.++|...|..+.++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998887777 888775 5667889999999999999999999999999999998885
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-08 Score=90.99 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=101.0
Q ss_pred CHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 527 CLEYAIRVFKESS----SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 527 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
++.-|.+.|+-+- .. .+.-..++...+.-..++++.+..++.+..-=..-|... ..+.++.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHH
Confidence 4455666665433 12 222344556666666778888888888777422223333 34668888899999999999
Q ss_pred HHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 602 DSMRCKYGIIPQLEHY-ECMIKLYCRYGYMKELEDFVNRMPFNPTV-PMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
-.+.. ..++ |..+| ..|.++|.+.|+++-|++++-++..+.+. ..+..+.+-|.+.+.+=-|-.++..+..++|
T Consensus 417 ~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 87753 2333 44444 55778899999999999998888754443 3555667788898888888888888888888
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=101.68 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..+..+...+...|++++|.+.+++.....+.+...+..+...+...|+++.|...+++..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------
Confidence 44555666666666666666666666544444445555555555556666666665555554322
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+...+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...++
T Consensus 97 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 97 -----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233344455555556666666666666655532122 22344445556666666666666666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
+..+ ..+.+...+..+...+...|++++|...+++.. .+.+...+......+...|+.++|....+.+.+..|
T Consensus 160 ~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 160 RALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 6653 222234455566666666666666666666543 123334444455555566666666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-06 Score=87.12 Aligned_cols=534 Identities=14% Similarity=0.109 Sum_probs=258.2
Q ss_pred HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHH
Q 043637 49 FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTL 128 (693)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 128 (693)
+.+......|..|..+++.+.... .....|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+|..|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 444455566777777777766554 234556777788888888888888876443 3566777788888888887
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC-C
Q 043637 129 ELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN-K 207 (693)
Q Consensus 129 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 207 (693)
++-++.. |.......|..-..-+-..|.+.+|.+++-.+ | .| ...|.+|-+.|..+..+++.++... .
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p-----~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EP-----DKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cc-----hHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 7765543 22333445555555566677777777665322 1 22 2346677777777777777665432 1
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH--------------HHHHHh
Q 043637 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH--------------GVIIKI 273 (693)
Q Consensus 208 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~--------------~~~~~~ 273 (693)
=..+-..+..-+-..|+...|..-|-+... |...++.+..++-+++|.++- -+.+..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 122333444555555666666655544321 223333333333333333321 122222
Q ss_pred cCCCchHHHH------HHHHHHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--ccH
Q 043637 274 DFEGDDVVLG------SLTEMYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRIREARELFNEMPERNV--ISW 344 (693)
Q Consensus 274 g~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 344 (693)
|-...+...| .-++..+..+.++-|.++-+-..+ +.......+..-+-..|++++|.+-+-+..+.|. .||
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitw 1031 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITW 1031 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchh
Confidence 2111111111 112223333444444433332222 2223344455556678888888777766655332 122
Q ss_pred HH-------------------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 043637 345 NA-------------------MLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN 405 (693)
Q Consensus 345 ~~-------------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (693)
.. .+..+.+.++|..|.++-+.-.+ ...| ..+..-.+.....|++..|+.++-...
T Consensus 1032 cqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~-~~l~--dv~tgqar~aiee~d~~kae~fllran-- 1106 (1636)
T KOG3616|consen 1032 CQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE-DLLA--DVLTGQARGAIEEGDFLKAEGFLLRAN-- 1106 (1636)
T ss_pred hhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh-hhhH--HHHhhhhhccccccchhhhhhheeecC--
Confidence 21 12223333444444433322110 0111 122222233334455555554432222
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC------------------CChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 406 DYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR------------------RDKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
+|++ .++.|...+.|..|+++..+.++. ..+..+-.-..-+-+.|++.+|...+-
T Consensus 1107 --kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~l 1179 (1636)
T KOG3616|consen 1107 --KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALL 1179 (1636)
T ss_pred --CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHh
Confidence 4443 455667777788877776666552 133345555556677788888877776
Q ss_pred HhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHH
Q 043637 468 EMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICN 547 (693)
Q Consensus 468 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 547 (693)
++......+. .++..|. ++|-.+--+. .-...+.....+....+...|..+.|.+++-... .-.
T Consensus 1180 kinrdst~nd----~l~e~~~-----~kaadl~ikf--l~~d~nme~i~aa~~al~~~~~~e~aael~l~f~-----~~k 1243 (1636)
T KOG3616|consen 1180 KINRDSTDND----ALAEHCT-----EKAADLSIKF--LMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD-----LSK 1243 (1636)
T ss_pred hhccCCCCcH----HHHHHHH-----HHHHhhhhhh--cCCccchhhHHhcchhhhcccccHHHHHHHHHhh-----hHH
Confidence 6633221111 1111110 0000000000 0000112222333333333333333333332110 011
Q ss_pred HHHHHHHhCCChHHH---------------HHHHHHHHHCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 548 SMILGFCHNERGREA---------------LEVFGLMKKEGIKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A---------------~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
..|.++|+...+.+| .+.+++..+..-+.+. +-....+..+..+++|++|++.-. +..
T Consensus 1244 eaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak----~qn 1319 (1636)
T KOG3616|consen 1244 EAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAK----KQN 1319 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHH----hcc
Confidence 123333333333333 3333333332222221 223345577788888888876543 247
Q ss_pred CCCChhHHHHHH-HHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQLEHYECMI-KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|-..-|..+. ..+.+.|+..+|+.++++-.
T Consensus 1320 ykpil~kyva~yaa~li~~~d~aq~lal~~q~g 1352 (1636)
T KOG3616|consen 1320 YKPILDKYVALYAAHLIHEGDLAQALALLEQHG 1352 (1636)
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC
Confidence 777766665543 44678888888888888765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-08 Score=90.59 Aligned_cols=195 Identities=10% Similarity=0.046 Sum_probs=113.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHH-----HHHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHh
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNA-----VLTGYARRGQSEEAMTSFSEMQWET--RPSKFTFETLLAAC 487 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~~~~~ll~~~ 487 (693)
.|+-.|.+.+++.+|..+..+..+. |-....-. +..-........-|.+.|+-.-.++ ..+...-.++..++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4555678888888887776665442 22111111 1111111222344555565554444 11222223334444
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC---HHHHHH-HHHHHHhCCChHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD---VIICNS-MILGFCHNERGREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-l~~~~~~~g~~~~A~ 563 (693)
.-..++++..-++..+...-..-|...+ .+.++++..|...+|+++|-.+..|+ ..+|.+ |.++|.+.++.+.|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 4455677777777766664444344444 36788888888888888888777443 345544 567778888888776
Q ss_pred HHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 043637 564 EVFGLMKKEGIKPDHITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHY 617 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 617 (693)
.++-++.. +.+..+...+| +-|.+.+.+=-|.+.|+.+. ...|+++.|
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 65543322 23444555555 77888888888888888775 456777666
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=81.07 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 207 KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 207 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=114.55 Aligned_cols=243 Identities=11% Similarity=-0.037 Sum_probs=153.0
Q ss_pred CChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 425 GNLRSARIWFYQMSQR-R-DKVSWNAVLTGYAR---------RGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 425 ~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+.+++|...+.+.+.. | +...|..+..++.. .+++++|...+++.....+.+...+..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777763 4 34455555544432 23467888888887777666777777777777788888
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD-VIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
++|...+++..+.++. +...+..+..++...|++++|...+++.. .|+ ...+..++..+...|++++|...++++.
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8888888888776543 45566667777888888888888887765 333 2233334445666777888888887776
Q ss_pred HCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 043637 571 KEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP----FNP 644 (693)
Q Consensus 571 ~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 644 (693)
+.. .|+. ..+..+..++...|++++|...++++.. ..|+ ......+...|++.| ++|...++++. ..+
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 642 3543 4455566777778888888888877653 2333 333445555666666 36666555543 222
Q ss_pred CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 645 TVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 645 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
..+.+ ....+.-+|+.+.+..+ +++.+.++
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22333 44455556666666666 66655544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-07 Score=92.63 Aligned_cols=108 Identities=14% Similarity=-0.039 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
|......+.+.+..++|...+.+... -.+.....|......+...|..++|.+.|.... .+..++...+++..+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44445777888899999988888863 445567778888889999999999999998775 56678899999999999
Q ss_pred cCCccHHHH--HHHHHhhcCCCCCcchhhhhhcc
Q 043637 659 NGYATLGEW--AARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 659 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.|+...|.. ++..+++++|.++.+|..||.++
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 998888877 99999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=79.14 Aligned_cols=50 Identities=38% Similarity=0.642 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH 590 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 590 (693)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-07 Score=94.14 Aligned_cols=621 Identities=11% Similarity=0.000 Sum_probs=321.6
Q ss_pred HHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCc-----ccHHHHHHHH
Q 043637 44 LYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDG-----GSWNAMLGAY 118 (693)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~ 118 (693)
.|..|...|+..-+...|...|+.+.+.+. .+........+.|+...+++.|..+.-...+.++ ..|-...-.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 455555556555566666677776666653 3555566667777777777777666443333221 1222233345
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-hhHhHHHHHhhcCCCHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNV-ILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A 197 (693)
.+.++...|+.-|+...+.. +-|...|..+..+|.+.|++..|.++|....... |+. ...--..-.-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHH
Confidence 56666666666666665543 4456666667777777777777777766655432 221 1111111223445666666
Q ss_pred HHHHhccCC---------C-CcccHHHHHHHHHhcCCchHHHHHHHHHH-------HCCCCCCHHhHHHHHHHhcCCCCc
Q 043637 198 RRMFDDIQN---------K-NAVSWNVIVRRYLVAGNGKEAVVMFFKML-------REDIRPLNFTFANALFACSFLSSP 260 (693)
Q Consensus 198 ~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~ll~~~~~~~~~ 260 (693)
...+..+.. . -..++--+...+.-.|=...|.+.++.-+ .+...-+...|..+-++|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac------ 723 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC------ 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH------
Confidence 666555431 0 01111111112222222223333332221 111111222222222221
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCh---h---HHHhhhcCCCC--CCchhHHHHHHHHHh-------cC-
Q 043637 261 YEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRL---E---DARGLLDQPDE--RNIISWTSIVSGYAI-------SG- 324 (693)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~-------~g- 324 (693)
.++-... .. .|+......+..-.-+.+.. + -+.+.+-.-.+ .+..+|..++..|.+ .+
T Consensus 724 ----~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 724 ----YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred ----HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcch
Confidence 1111111 00 11111111111111111111 1 00000000000 123455555544443 11
Q ss_pred CHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHH
Q 043637 325 RIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGF 401 (693)
Q Consensus 325 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (693)
+...|+..+....+ .+..+||.|.-. ...|.+.-|...|-+-+.. .+-...+|..+--.+....+++.|...+..
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHh
Confidence 23356666665544 566777777655 5556666666666544332 122445555566667778888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh--cC--C---CChhhHHHHHHHHHhcCChHHHHHHHHHhh----
Q 043637 402 IHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM--SQ--R---RDKVSWNAVLTGYARRGQSEEAMTSFSEMQ---- 470 (693)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 470 (693)
.+.-. |.+...+-.........|+.-++...+... .. + ++..-|-+.......+|+.++-+...+++.
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 76543 345555555444555667666665555541 11 1 233334444444556666666555544442
Q ss_pred ------hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHH----HHHHHHHhhCCHHHHHHHHhcCC
Q 043637 471 ------WETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRG----ALVEVYTKCCCLEYAIRVFKESS 539 (693)
Q Consensus 471 ------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~ 539 (693)
...+.....|........+.+.++.|.....+++. ...+.+...|+ .....++..|.++.|..-+....
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 22244556777777777777777777777666554 22233444444 33445666788887776665544
Q ss_pred -CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 540 -SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 540 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
..+..+-..-+.. .-.|+++++.+.|++... +.-+. .....++.+....+.-+.|...+-+... -.+|+.
T Consensus 1035 ~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~--ls~~~~ 1109 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS--LSKVQA 1109 (1238)
T ss_pred hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH--hCccch
Confidence 3333332222222 446789999999999887 33222 3344555666677788888888888774 556666
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---C----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRM---P----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
...-.|...+.-..+-.....+++++ . ..-.++.... ..+.+.|+-....+.+++..-.+|.+|..+-.|.
T Consensus 1110 ~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e--~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1110 SSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKE--LIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHH--HHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 66655555554433333333333333 1 1223333322 3456788888999999999999999999998887
Q ss_pred hcc
Q 043637 688 NRF 690 (693)
Q Consensus 688 ~~y 690 (693)
+-|
T Consensus 1188 vry 1190 (1238)
T KOG1127|consen 1188 VRY 1190 (1238)
T ss_pred HHH
Confidence 543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-07 Score=88.05 Aligned_cols=447 Identities=11% Similarity=0.006 Sum_probs=216.9
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCchhhHhHHHHHhhcCCC
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGF-CGNVILESSLVDAYGKCMV 193 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~ 193 (693)
++-+.+.|++++|.....++...+ +-|...+..=+-++.+.+.++.|..+.+. .+. ..+...+-.=.-+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHccc
Confidence 344556667777777777776654 44555666666666777777777744332 111 1111111111222335677
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 194 MTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
.++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--.. .-..++.+... . ....+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l-~~~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------L-QVQLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------h-hHHHHHh
Confidence 7777777774444444455555566677777777777777776654321111 11111110000 0 0001111
Q ss_pred hcCCC--chHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC-CCCCc--------
Q 043637 273 IDFEG--DDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEM-PERNV-------- 341 (693)
Q Consensus 273 ~g~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-------- 341 (693)
....| +...+-...-.+...|++.+|++++++. +++..+- .+.|.
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA------------------------~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKA------------------------LRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH------------------------HHHHHHhhcccccchhhHHHH
Confidence 11111 1111111222333445555554444422 1111000 11110
Q ss_pred --ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH---HHhcccchhh--HHHH-----------HHHHH
Q 043637 342 --ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILN---VCAGLSEIKM--GKEV-----------HGFIH 403 (693)
Q Consensus 342 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~ 403 (693)
..-..+...+-..|+..+|..++....+.. .+|........+ ++..-.++-. .... +..+.
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 011123334556777778888777776654 233322221111 1111111111 0111 11111
Q ss_pred HhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHH--HhcCChHHHHHHHHHhhhCC-CCCHHHH
Q 043637 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGY--ARRGQSEEAMTSFSEMQWET-RPSKFTF 480 (693)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~p~~~~~ 480 (693)
.......+..-+.++..|. +..+.+.+.....-.......+..++... ++...+.++.+++....... .-.....
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111112222233333332 33334422222222221223344444332 22334677777777766554 2234566
Q ss_pred HHHHHHhcccCChHHHHHHHH--------HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC------CCCHH--
Q 043637 481 ETLLAACANISSLEQGKQIHC--------FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS------SLDVI-- 544 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~-- 544 (693)
..++......|+++.|.+++. .+.+.+. .+.+...++..+.+.++-+.|..++.+.. .+...
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 666777888999999999988 3333333 44556677777887777666666665543 11212
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 545 --ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 545 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
++..++..-.+.|+.++|..+++++.+. -++|..+...++.+|++. +++.|..+-..+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3344444455779999999999999884 244678888888888765 567776665443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-07 Score=91.41 Aligned_cols=443 Identities=11% Similarity=0.005 Sum_probs=215.5
Q ss_pred CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHH
Q 043637 122 GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMF 201 (693)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 201 (693)
+++.+.+...+...+ +.+-...|.....-.+...|+.++|....+...... ..+.+.|..+.-.+-...++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444433 122223333333333444555555555555444432 223345555555555555566666665
Q ss_pred hccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HhHHHHHHHhcCCCCcchhHHHHHHHHHhc-CC
Q 043637 202 DDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN-FTFANALFACSFLSSPYEGMQIHGVIIKID-FE 276 (693)
Q Consensus 202 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~ 276 (693)
..... .|...|.-+.-.-++.|+++........+.+. .|+. ..|..+..+..-.|+...|..+.+...+.. ..
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 55442 23334444444445555555555555555442 2332 244555555555555666665555554443 23
Q ss_pred CchHHHHHHH------HHHHHcCChhHHHhhhcCCCCC--C-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHH
Q 043637 277 GDDVVLGSLT------EMYVKCGRLEDARGLLDQPDER--N-IISWTSIVSGYAISGRIREARELFNEMPE--RNVISWN 345 (693)
Q Consensus 277 ~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 345 (693)
|+...+.... ....+.|.+++|.+.+.+.... | ...-..-...+.+.++.++|..++..+.. ||...|+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 3333333221 2344566667666666554432 1 12223345566777777788877777766 4444444
Q ss_pred HHHH-HHHhCCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 346 AMLA-GYTRSLLWKEAL-DFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 346 ~l~~-~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
..+. ++....+.-+++ .+|....+. .+-....-..-+.......-.+....++..+.+.|+++-.....++-.--.+
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 4433 333333333333 444444332 1111111111111111222233344555555666655432222222111000
Q ss_pred cCChHHHHHHHHhhcC--------------CCChhhH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQ--------------RRDKVSW--NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~ 487 (693)
..-+++-.-.+...+. .|....| -.++..+-..|+++.|...++.....-+.-..-|..-.+.+
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF 415 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 1101111111111111 1233333 34667777888888888888877655333334555556777
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----------HHHHH--HHHHHh
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----------ICNSM--ILGFCH 555 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~l--~~~~~~ 555 (693)
...|+.+.|..++++..+... +|...-+.-+....++.+.++|.++.....+.+.. .|-.+ ..+|.+
T Consensus 416 kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred HhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHH
Confidence 888888888888888776433 34444445666677788888888877665532211 22222 455677
Q ss_pred CCChHHHHHHHHHHH
Q 043637 556 NERGREALEVFGLMK 570 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~ 570 (693)
.|++..|++-|..+.
T Consensus 495 ~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 495 QNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHhhHH
Confidence 777777766555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-09 Score=97.52 Aligned_cols=198 Identities=14% Similarity=0.037 Sum_probs=140.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.....+..+...+...|++++|...+.+.+.. | +...+..+...+...|++++|.+.+++.....+.+...+..+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567788899999999999999999887763 3 566788888999999999999999999887766667778888888
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
+...|++++|...+++..+....+ .....+..+...+...|++++|...+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999999999888887632111 11223444555666667777777777
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 567 GLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 567 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++..+ ..|+ ...+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+
T Consensus 159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 76666 3343 355666666777777777777777776642 3334555556666666777777777665554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=97.01 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=158.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+.+..+|.+.|.+.+|+..+...+.+ |.+.||-.|-+.|.+.++++.|+.++.+-....+-+......+.+.+...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 45667777777777777777666653 56666777777777777777777777665544333333333444444445555
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEG 573 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 573 (693)
++|.++++.+.+.. +.++.....+...|.-.++.+-|+..++++.+.|
T Consensus 307 ~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 55555555444421 2333444445566677778888888888888877
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhH
Q 043637 574 IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPML 649 (693)
Q Consensus 574 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 649 (693)
+. ++..|+.+.-+|.-.+++|-++.-|++.... .-.|+ .++|..+.......|++.-|.+.|+-.. .+.....+
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 53 5667777777888888888888888887752 33344 4567777788888888888888887664 34455677
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 650 RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+.+.-.-.+.|+.++|+..+..+..+.|+-.....+|
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 7777777788888888888888888888654444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=97.26 Aligned_cols=192 Identities=8% Similarity=-0.135 Sum_probs=113.3
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCH 555 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 555 (693)
.|......+...|+.+.|...|++..+..++ +...|+.+...+...|++++|...|++.. +.+...|..+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444455555666666666666666554432 45566666666666666666666666554 3345567777777778
Q ss_pred CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH--H
Q 043637 556 NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE--L 633 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A 633 (693)
.|++++|++.+++..+ ..|+..........+...++.++|.+.+++... ...|+...+ . ..+...|+..+ +
T Consensus 145 ~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~--~~~~~lg~~~~~~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-N--IVEFYLGKISEETL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-H--HHHHHccCCCHHHH
Confidence 8888888888888877 556543222222233456678888888866553 333333221 2 22233444433 3
Q ss_pred HHHHHhCC-C-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 634 EDFVNRMP-F-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 634 ~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
...+.+.. . +.....|..++..+...|++++|...|+++++++|.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32222221 1 112346777788888888888888888888888863
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-09 Score=108.56 Aligned_cols=243 Identities=9% Similarity=-0.068 Sum_probs=154.1
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH---------cCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCC
Q 043637 390 SEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK---------CGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~ 458 (693)
++.+.|...+++..+.. +.+...+..+..++.. .+++++|...+.+.+.. | +..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45667777777776553 2334455555544432 23367777777776662 3 55667777777778888
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+++|...|++.....+.+...+..+..++...|++++|...+++..+..+.. ...+..++..+...|++++|...+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888888777766666777777778888888888888888887755442 222223344455577788888877765
Q ss_pred C---CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 539 S---SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHIT-FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 539 ~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
. +| ++..+..+..++...|+.++|...++++.. ..|+... .+.+...|...| +.|...++.+.+.....+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 4 23 344566677777788888888888877666 3555433 344445666666 4677767666653333333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+ +...|.-.|+.+.+..+ +++.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 2222 44455666777766666 6665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-09 Score=95.56 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=155.8
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE 557 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 557 (693)
..+.++|.+.|-+.+|+..++...+. .|-+.+|-.|..+|.+..+.+.|+.++.+.. +-|+.....+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34455555555555555555544442 2445566666677777777777777777665 445555666777888889
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 558 RGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.++|.++++...+ ..| +......+...|.-.++++-|+.+++++.+ .|. .+++.|..+.-+|.-.+++|-++..
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998 455 456666777889999999999999999996 565 5778899999999999999999999
Q ss_pred HHhCC---CCCC--HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 637 VNRMP---FNPT--VPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 637 ~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
|++.. .+|+ ...|-.+.......||+..|.+.++.++.-+|++..++++|+-+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 98775 2333 34677788888889999999999999999999999999999854
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-08 Score=97.06 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccc-HHHHHHHHHhCC
Q 043637 280 VVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE---RNVIS-WNAMLAGYTRSL 355 (693)
Q Consensus 280 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~l~~~~~~~~ 355 (693)
.+...+...|...|+++.|..+++ .|++++.+... +.+.+ .+.+...|...+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k------------------------~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~ 255 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCK------------------------QALRILEKTSGLKHLVVASMLNILALVYRSLG 255 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH------------------------HHHHHHHHccCccCHHHHHHHHHHHHHHHHhc
Confidence 445557777778888887776666 34444322222 22221 223556677788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
++++|..+|+++... .+.......+--..+++.|..+|.+.|++++|...+
T Consensus 256 k~~eAv~ly~~AL~i----------------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~- 306 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTI----------------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC- 306 (508)
T ss_pred cHHHHHHHHHHHHHH----------------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-
Confidence 888888888877541 111111111222345666777778888888874443
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH-HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK-FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+.|++++++......|.. ..++.+...|+..++++.|..+++...+
T Consensus 307 ------------------------e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 307 ------------------------ERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred ------------------------HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334555555211112222 2334445556666666666666654443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-06 Score=82.06 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=51.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--------------------hhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQ--------------------LEHYECMIKLYCRYGYMKELEDFVNRMPF 642 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (693)
..|+++++...|.+|.++-++..- ...|. +. ....++.+...+++++|++.-++-..
T Consensus 1244 eaida~~~~eewakakqvake~~p--~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qny 1320 (1636)
T KOG3616|consen 1244 EAIDAFCEAEEWAKAKQVAKELDP--EMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNY 1320 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhccc
Confidence 346788888888888877665531 22221 11 12345778888888888877665443
Q ss_pred CCCHHhHHHHHH-HHHhcCCccHHHHHHHHH
Q 043637 643 NPTVPMLRKIFD-KCRKNGYATLGEWAARRL 672 (693)
Q Consensus 643 ~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~ 672 (693)
+|-..-|-.+.. .+.+.|+..+|...+++-
T Consensus 1321 kpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1321 KPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 333222222222 233578888888777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-06 Score=84.24 Aligned_cols=523 Identities=10% Similarity=0.054 Sum_probs=268.3
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC-----------CCcccHHH-HHHHHH
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-----------RDGGSWNA-MLGAYT 119 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~-li~~~~ 119 (693)
|..-|+.+.|.+-++.+. +..+|..+.+.|.+..++|-|.-.+-.|.. .+..--.+ ......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 456778888777666553 346788888888888888888777766642 12211122 222234
Q ss_pred hCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHH
Q 043637 120 QNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARR 199 (693)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 199 (693)
+-|..++|..+|.+-++. ..+=+.|...|.+++|.++-+.--+..+. .||.....-+-..+|.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 667888888888877653 34445666788888888876543332222 344455555566788888888
Q ss_pred HHhccCC-----------------------CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 200 MFDDIQN-----------------------KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 200 ~~~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
.|+.... .|...|.-....+-..|+.+.|+.+|...+. |.++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 8776532 2344455555555566777777777776643 5667777788
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcC------------
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISG------------ 324 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g------------ 324 (693)
.|+.++|.++-++ ..|....-.|.+.|-..|++.+|...|-+... +...|+.|-.++
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHHHHHHHhhc
Confidence 8888888877665 33555566677888888888888877754331 222222221111
Q ss_pred ---CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHH--------HHHcCCCC--CHhhHHHHHHHHhcccc
Q 043637 325 ---RIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFL--------MRKTTKDI--DQVTLGLILNVCAGLSE 391 (693)
Q Consensus 325 ---~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~~~~~~p--~~~~~~~ll~~~~~~~~ 391 (693)
+.-.|-+.|++..- -+...+..|-+.|.+.+|+++-=+ +....+.| |+...+.....++...+
T Consensus 1020 ~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred CchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 12222333333321 112223445566666666554211 12222222 34444444445555556
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-C----CCh----hhHHHHHHHHHhcCChHHH
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-R----RDK----VSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~----~~~----~~~~~l~~~~~~~~~~~~a 462 (693)
++.|..++-...+. ..-+. +|+..++.-. +.+-+++. . |+. .....+...|.++|.+..|
T Consensus 1096 yekAV~lL~~ar~~---------~~Alq-lC~~~nv~vt-ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREF---------SGALQ-LCKNRNVRVT-EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHH-HHhcCCCchh-HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 66665555443321 11111 2222233222 22222222 1 111 2344555667777777766
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH-------------HHHHHHhCCCcchhHHHHHHHHHHhhCCHH
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI-------------HCFVIRNCYEINVVCRGALVEVYTKCCCLE 529 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (693)
-+-|.+.-.. ...++++.+.|+.++..-+ -+-+.......++.+...++..|.+..-++
T Consensus 1165 tKKfTQAGdK--------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd 1236 (1416)
T KOG3617|consen 1165 TKKFTQAGDK--------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFD 1236 (1416)
T ss_pred HHHHhhhhhH--------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHH
Confidence 6655543211 1233444455554432110 011112233344555555555555544444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH----------HHHHh-ccCcHHHHH
Q 043637 530 YAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI----------LLACI-HEGNVKLAL 598 (693)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------~~~~~-~~g~~~~A~ 598 (693)
.--.+|+......+.-|..+-.+ .|-.++|-+.+.+...++ -....++.| ++... -..+..+.+
T Consensus 1237 ~LanFY~~cAqiEiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i 1311 (1416)
T KOG3617|consen 1237 HLANFYKSCAQIEIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGI 1311 (1416)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44333333221111111111111 122445555555554432 111122222 21111 112445555
Q ss_pred HHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 599 QFFDSMRCKYGIIP----QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 599 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.-.+.|.++ ..-| -...|..||+.|....++..|-+.+++|.
T Consensus 1312 ~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1312 RQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQ 1357 (1416)
T ss_pred HHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 555555543 2222 24567778888888888888888888775
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-07 Score=93.19 Aligned_cols=279 Identities=11% Similarity=0.016 Sum_probs=176.7
Q ss_pred HHHHHcCChhHHHhhhcCCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHH-h-----CC
Q 043637 287 EMYVKCGRLEDARGLLDQPDE--RN-IISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYT-R-----SL 355 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~-~-----~~ 355 (693)
..+...|++++|++.+++... .| ..........+.+.|+.++|..++..+.+ |+...|...+..+. . ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 345667888888887766444 23 23455666777788888888888888876 44444444333332 1 22
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccch-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEI-KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWF 434 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 434 (693)
+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +++.+-..|....+..-...++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 4667777888776543 4333333332222222222 23455566666677654 3444444454333333333333
Q ss_pred HhhcC-----------------CCChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 435 YQMSQ-----------------RRDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 435 ~~~~~-----------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
..... .|... ++.-+...|-..|++++|++.+++.....+.....|..-.+.+-+.|++++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33211 12222 345567778889999999999998887765557788888889999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----------HH--HHHHHHHHhCCChHHHH
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----------IC--NSMILGFCHNERGREAL 563 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~~~~A~ 563 (693)
|.+.++..+..... |...-+-.+..+.++|+.++|.+++....+++.. .| .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999988886554 6667777788888999999999988877744411 22 34567888999988888
Q ss_pred HHHHHHHH
Q 043637 564 EVFGLMKK 571 (693)
Q Consensus 564 ~~~~~m~~ 571 (693)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 77766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-06 Score=81.08 Aligned_cols=435 Identities=13% Similarity=0.037 Sum_probs=246.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHH
Q 043637 153 SAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAV 229 (693)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 229 (693)
|-..+++....+..+.+.+ +.+....+.....-.+...|+-++|........+ .+.++|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3456677777777777776 3344444544444455677899999988887765 45667888888888888999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCC
Q 043637 230 VMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERN 309 (693)
Q Consensus 230 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 309 (693)
+.|...... .||... ++.-+.-.-+.-|+++
T Consensus 96 Kcy~nAl~~--~~dN~q----------------------------------ilrDlslLQ~QmRd~~------------- 126 (700)
T KOG1156|consen 96 KCYRNALKI--EKDNLQ----------------------------------ILRDLSLLQIQMRDYE------------- 126 (700)
T ss_pred HHHHHHHhc--CCCcHH----------------------------------HHHHHHHHHHHHHhhh-------------
Confidence 999988763 444322 1111111111112222
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHH-
Q 043637 310 IISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTK-DIDQVTLGLILN- 384 (693)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~- 384 (693)
.....-....+ .....|.....++.-.|++..|..+++...+... .|+...|.....
T Consensus 127 ------------------~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 127 ------------------GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred ------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 11111111111 2334555566666666777777777766665542 455544433222
Q ss_pred -----HHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHHHH-HHHHhcC
Q 043637 385 -----VCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNAVL-TGYARRG 457 (693)
Q Consensus 385 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~-~~~~~~~ 457 (693)
.....|..+.+.+.+...... +......--.-...+.+.+++++|..++...+.+ ||...|.... .++.+-.
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 223455555555544433221 1111122233455677888888887777777663 6666655544 3343333
Q ss_pred ChHHHH-HHHHHhhhCC----CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH---H
Q 043637 458 QSEEAM-TSFSEMQWET----RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL---E 529 (693)
Q Consensus 458 ~~~~a~-~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~ 529 (693)
+.-+++ .+|......- .|-....+. .....-.+....++....+.|+.+-.....+ .|...... +
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le 340 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLE 340 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHH
Confidence 333333 5555543332 222222221 1222333444455566666665543222222 22211111 1
Q ss_pred H-HHHHHhc--------------CCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc
Q 043637 530 Y-AIRVFKE--------------SSSLDVIICN--SMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE 591 (693)
Q Consensus 530 ~-A~~~~~~--------------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 591 (693)
+ +..+... ..+|....|. -++..+-+.|+++.|...++...+ -.|+. .-|..-.+.+...
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHA 418 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhc
Confidence 1 1111111 1145555554 467788899999999999999998 46765 5565666899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HH--------hHH--HHHHHHHhcC
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPT-VP--------MLR--KIFDKCRKNG 660 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--------~~~--~l~~~~~~~g 660 (693)
|+++.|..++++..+ -..||..+-..-+.-..++++.++|..++......+. .. .|- .-+.+|.+.|
T Consensus 419 G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred CChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 999999999999975 4566766666777888899999999999877752221 11 222 2245677777
Q ss_pred CccHHHH
Q 043637 661 YATLGEW 667 (693)
Q Consensus 661 ~~~~A~~ 667 (693)
.+.+|..
T Consensus 497 k~g~ALK 503 (700)
T KOG1156|consen 497 KLGLALK 503 (700)
T ss_pred HHHHHHH
Confidence 7766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-08 Score=81.78 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=106.8
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
-.|...|+...|..-+++..+..+. +..++..+...|.+.|+.+.|.+.|++.. +.+-.+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 3344444444444444444443322 33444444555555555555555554433 3344556666666666677777
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 562 ALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 562 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|...|++....-.-|. ..+|..+..+..+.|+.+.|...|++..+ -.+-.+.....+.+...+.|++-.|..+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7777776666322222 25666666666667777777777776664 23333445566666667777777777666665
Q ss_pred CC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 641 PF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 641 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.. .+....+.-.+..-...||.+.+-+.-..+....|..+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 42 23333333344444556676666666666666666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-06 Score=88.71 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=91.8
Q ss_pred chhhHhHHHH--HhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCHH
Q 043637 177 NVILESSLVD--AYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRE-D--------IRPLNF 245 (693)
Q Consensus 177 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~ 245 (693)
|..|..++++ .|..-|+++.|.+-++.+. +...|..|.+.+.+.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 5566666654 4667788888877776654 3456888888888888888888777777532 1 1121 2
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHhcC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAISG 324 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g 324 (693)
+-..+.-.....|.+++|+.+|.+.++.. .|=..|-..|.+++|.++-+.-.+- =..+|.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222223345566777777777665532 2334566677888777776544332 1235666666666677
Q ss_pred CHHHHHHHHhhCC
Q 043637 325 RIREARELFNEMP 337 (693)
Q Consensus 325 ~~~~A~~~~~~~~ 337 (693)
+.+.|++.|++..
T Consensus 873 Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 873 DIEAALEYYEKAG 885 (1416)
T ss_pred cHHHHHHHHHhcC
Confidence 7777777777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-06 Score=86.87 Aligned_cols=575 Identities=12% Similarity=-0.017 Sum_probs=298.6
Q ss_pred hhhHHHhhccCCCCCc---ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHH
Q 043637 93 LDDARGLFDEMPERDG---GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLI 169 (693)
Q Consensus 93 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 169 (693)
...|...|-+..+.|+ ..|..|...|+...+..+|...|+...+.+ .-+......+...+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544433333 368888888888888888999998888764 446677888889999999999998883332
Q ss_pred HHhCC-CCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 043637 170 VKRGF-CGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF 245 (693)
Q Consensus 170 ~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 245 (693)
.+... ..-..-|..+.-.|.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+..
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK 630 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH
Confidence 22210 11112222344456677888888888887764 4666788889999999999999999988765 445432
Q ss_pred hHHHHH--HHhcCCCCcchhHHHHHHHHHhc------CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC----------
Q 043637 246 TFANAL--FACSFLSSPYEGMQIHGVIIKID------FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---------- 307 (693)
Q Consensus 246 ~~~~ll--~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------- 307 (693)
|...- ...+..|...++...+......- ...-..++-.+...+...|-..+|.+.+++-.+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 22222 22355677777777776654321 111222333333333333433444444332211
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCCH---H---HHHHHHHHHHHcCCCCCHh
Q 043637 308 -RNIISWTSIVSGYAISGRIREARELFNEMPERNVIS---WNAMLAGYTRSLLW---K---EALDFVFLMRKTTKDIDQV 377 (693)
Q Consensus 308 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~---~---~a~~~~~~m~~~~~~p~~~ 377 (693)
.+...|..+- .|..+|-... |+.+. ...+..-.-..+.. + -+.+.+-.-.+.-..| ..
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~-~~ 777 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHM-YP 777 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhcc-ch
Confidence 0111111111 2233333332 33111 11111101111111 1 0111111111111111 11
Q ss_pred hHHHHHHHHh------ccc-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHH
Q 043637 378 TLGLILNVCA------GLS-EIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNA 448 (693)
Q Consensus 378 ~~~~ll~~~~------~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 448 (693)
.|+.-++.+. ..+ +...|...+...++.. ..+..+++.|. .....|++.-+...+-+... +....+|..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhccccchhheec
Confidence 2222222211 111 1123444444433321 22333444443 33555666666555444333 235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH----hCCCcchhHHHHHHHHHHh
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR----NCYEINVVCRGALVEVYTK 524 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 524 (693)
+...+.+..+++-|...|...+...+.+...+..........|+.-+...+|..--. .|--++..-+-........
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 777777888888888888877766666666666665555566666666666655222 2222233222222233334
Q ss_pred hCCHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHH----HH
Q 043637 525 CCCLEYAIRVFKESS-------------SLDVIICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGI----LL 586 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----~~ 586 (693)
.|+.++-+...+.+. +.+...|.......-+.+.+..|.+...+.... ..+-|..+|+.+ .+
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gR 1015 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGR 1015 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 455444433333322 334456666666666666666666666554331 012344455532 24
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-HHhHHHHHHHHHhcCC
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPT-VPMLRKIFDKCRKNGY 661 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~ 661 (693)
.++..|.++.|...+..... ..+..+...-+ ...-.|+++++.+.|++.. ...+ +.....++......+.
T Consensus 1016 L~lslgefe~A~~a~~~~~~----evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1016 LELSLGEFESAKKASWKEWM----EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhcchhhHhhhhcccch----hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 55566666665554432211 11111111111 1133678888888888774 2222 3455556666667777
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+-|...+-....+.|.+...+.-|+.+|
T Consensus 1091 k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred chHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 88888888888888887777777776655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-08 Score=96.80 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCC---------CChh-hHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQR---------RDKV-SWNAVLTGYARRGQSEEAMTSFSEMQW-----ET- 473 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~- 473 (693)
-..+...+...|...|+++.|+..+...+.. +... ..+.+...|...+++++|..+|+++.. .|
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556777788888888887666665542 1111 122344555666666666666665521 11
Q ss_pred -CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHH-HHH
Q 043637 474 -RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVI-ICN 547 (693)
Q Consensus 474 -~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~-~~~ 547 (693)
.| -..++..|..+|.+.|++++|...+++..+ +++... .+.+. .++
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLS 329 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHH
Confidence 11 122333444445555555555444444332 111111 12222 355
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC--CCC-h
Q 043637 548 SMILGFCHNERGREALEVFGLMKKE---GIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKY---GI--IPQ-L 614 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~--~p~-~ 614 (693)
.++..++..+++++|..++.+..+. -..++ ..+++.|...|...|++++|.++++++..+. +. .+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777777777777777665441 01122 2568888888888888888888888876532 11 111 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP--------FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
..++.|...|.+.++..+|.++|.+.. ..| ...+|..|...|...|+++.|.+..+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346777788888888888877777653 122 234778888888888888888888888764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-07 Score=79.80 Aligned_cols=190 Identities=10% Similarity=0.008 Sum_probs=150.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
...+.-+|.+.|+...|...+++..+..+.+..++..+...|.+.|..+.|.+.|+...+..++ +..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 4456667778888888888888877777777777778888888888888888888887775544 566777777778888
Q ss_pred CCHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 043637 526 CCLEYAIRVFKESS-SL----DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 526 ~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
|++++|...|++.. .| -..+|..+..+..+.|+.+.|.+.|++..+ ..|+ ..+...+.....+.|++-.|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888766 33 345788888888999999999999999998 5675 4778888899999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.++.... ...++....-..|+.--+.|+.+.|-++=..+
T Consensus 195 ~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999875 45588888888888888899988887765544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-06 Score=79.42 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=228.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 043637 312 SWTSIVSGYAISGRIREARELFNEMPE-RNVISWNAMLAGYTRSLL--WKEALDFVFLMRKTTKDIDQVTLGLILNVCAG 388 (693)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 388 (693)
.-...+.+|...++-+.|...+...+. ....--|.++..+...|. .+++...-+-+++.-+-.+ .|.+..+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~------~i~~ll~ 172 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQ------VIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHH------HHHHHHH
Confidence 445677888889999999999888876 333333444433333322 2222222121221100000 0001100
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CChHHHHHH--HHhhcC--CCChhhHHHHHHHHHhcCChHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKC--GNLRSARIW--FYQMSQ--RRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~--~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
.+ +..+..--..|-...++|.......-+.++..+ ++...|... +.+... +.|......+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 001111111122223344444444444444433 333333222 222222 24677788899999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
+..|++.+...+-+........-.+.+.|+.+....+...+....-. +...|-.-........+++.|+.+-++..
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 99999987665444444444444456778888877777776653211 22222222333445678888999888877
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE 618 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 618 (693)
+.+...|-.=...+...|+.++|.-.|+..+. +.| +..+|..|+.+|...|++.+|.-+-.+... -+..+..+..
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~Lt 406 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLT 406 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhh
Confidence 34445555556778899999999999999888 777 569999999999999999999998888874 5556666666
Q ss_pred HHH-HHH-HhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 619 CMI-KLY-CRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 619 ~l~-~~~-~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+. ..+ ....--++|..++++.. .+| -.+....+.+.|...|..+.++..+++.+...|+ -.-++.||.++
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence 663 333 33445678999999875 344 4678888899999999999999999999999994 45667777654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-08 Score=91.46 Aligned_cols=249 Identities=13% Similarity=0.047 Sum_probs=147.2
Q ss_pred HcCChHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRR--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
-.|.+..++.........+ +.....-+.+++...|+++.++ .++.....|.......+...+...++.+.+..-+
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 3456655544333111111 1223334556677777665433 3443333566556555555555444444444444
Q ss_pred HHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH
Q 043637 501 CFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI 579 (693)
Q Consensus 501 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 579 (693)
+........ .+.........++...|++++|++++++. .+.......+..+.+.++++.|.+.++.|.+ +..|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~- 164 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS- 164 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-
Confidence 333322222 22222233334566678888888888776 4556666778888899999999999999887 44443
Q ss_pred HHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHH
Q 043637 580 TFHGILLACI----HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIF 653 (693)
Q Consensus 580 ~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 653 (693)
+...+..++. -.+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++.. .+.++.++..++
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 3333333332 23368889999999874 566788888888888999999999999888764 334455666666
Q ss_pred HHHHhcCCc-cHHHHHHHHHhhcCCCCCc
Q 043637 654 DKCRKNGYA-TLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 654 ~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 681 (693)
-.....|+. +.+.+.+..+...+|++|-
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 666666766 5677788888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-07 Score=91.52 Aligned_cols=285 Identities=13% Similarity=0.019 Sum_probs=197.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCc-ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-c----
Q 043637 317 VSGYAISGRIREARELFNEMPE--RNV-ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA-G---- 388 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~---- 388 (693)
...+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4567889999999999988665 443 455666788999999999999999999864 66666655555443 1
Q ss_pred -ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChH-HHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 -LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLR-SARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
..+.+...++++.+...- |.......+.-.+.....+. .+...+...+.+.-+.+++.+-..|....+..-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 234667778888776543 22222222211111112222 23334444555555667777777777555555555555
Q ss_pred HHhhhC--------------C-CCCH--HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHH
Q 043637 467 SEMQWE--------------T-RPSK--FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLE 529 (693)
Q Consensus 467 ~~~~~~--------------~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (693)
...... . +|+. .++..+...|...|++++|.++.++.++..+. .+..|..-...|.+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 554221 1 3444 35566677888999999999999999986543 4778888999999999999
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-----H-HHHH--HHHHHhccCcHHHHH
Q 043637 530 YAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-----I-TFHG--ILLACIHEGNVKLAL 598 (693)
Q Consensus 530 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~-~~~~--l~~~~~~~g~~~~A~ 598 (693)
+|.+.++... ..|..+-+..+..+.+.|++++|.+++......+..|-. . .|.. ...+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999998877 456667778888899999999999999999887755522 1 2222 237899999999998
Q ss_pred HHHHHhHH
Q 043637 599 QFFDSMRC 606 (693)
Q Consensus 599 ~~~~~~~~ 606 (693)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 87776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-06 Score=74.76 Aligned_cols=260 Identities=13% Similarity=0.044 Sum_probs=151.7
Q ss_pred HcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
..+++..+..++++.-.+.+..+.+.......+.|++++|++-|+...+-+ -.....|+.-+ ++.+.++++.|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 456666664444444445555555555566677888888888888765555 44445555444 4456677888888888
Q ss_pred HHHHhCCCcch----------------------------hHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCCHHHHHH
Q 043637 502 FVIRNCYEINV----------------------------VCRGALVEVYTKCCCLEYAIRVFKESS-----SLDVIICNS 548 (693)
Q Consensus 502 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ 548 (693)
+++++|++-.+ ..+|.-...+.+.++++.|.+.+-.|+ ..|+++...
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 87776553211 112222334567899999999999998 357777666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHh
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGII-PQLEHYECMIKLYCR 626 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~ 626 (693)
+.-.-. .+++.+..+-+.-+.+ +.| -..||..++-.||+..-++.|..++-+-.. ...+ .+...|+ |+.+++-
T Consensus 283 ~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 283 QALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHh
Confidence 543322 3445555555555666 455 358999999999999999998888754321 1111 1222232 2333332
Q ss_pred -cCChHHHHHHHHhC------------------CCCCCHHhHH------------------HHHHHHHhcCCccHHHHHH
Q 043637 627 -YGYMKELEDFVNRM------------------PFNPTVPMLR------------------KIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 627 -~g~~~~A~~~~~~~------------------~~~~~~~~~~------------------~l~~~~~~~g~~~~A~~~~ 669 (693)
.-..++|.+-++.+ ..+.+....+ +-...+....|+..+++.+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 23344443333221 0112222222 2223334567889999999
Q ss_pred HHHhhcCCCCCcchhhhhh
Q 043637 670 RRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 670 ~~~~~~~p~~~~~~~~l~~ 688 (693)
....+...++...-.+.+.
T Consensus 438 r~SvefC~ehd~WkLNvaH 456 (459)
T KOG4340|consen 438 RKSVEFCNDHDVWKLNVAH 456 (459)
T ss_pred HHHHhhhcccceeeecccc
Confidence 9998887766655444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-06 Score=83.56 Aligned_cols=192 Identities=10% Similarity=-0.054 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...+...|+.++|...|++.....+.+...|..+...+...|+++.|...++...+..+. +...+..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 346666666777777777777777776666666777777777777778888887777777765443 3455566677777
Q ss_pred hhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
..|++++|.+.++... .|+..............++.++|...|++.... ..|+...+ .+ .....|+...+ +.+
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLM 218 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHH
Confidence 7788888887777655 232221122222234567788888888765543 23433222 22 22234444433 344
Q ss_pred HHhHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIP-----QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.+.+.....| ....|..+...+.+.|+.++|+..|++..
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44442111111 23567788888888999999999888775
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-06 Score=74.44 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=95.3
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHH-HHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQNK---NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFAN-ALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~ 256 (693)
+.+.+..+.+..+++.|++++..-.++ +....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444455556666666666554432 3334555666666667777777777766543 343333321 1223334
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHH--HHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCHHHHHHHH
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTE--MYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRIREARELF 333 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (693)
.+.+.+|.++...|.+. +....-..-+. .....+++..+..++++... .+..+.+.......+.|+.+.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 44555555555544332 11111111111 12234666666666666552 44444455555555666666666666
Q ss_pred hhCCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043637 334 NEMPE----RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD 373 (693)
Q Consensus 334 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 373 (693)
+...+ .....||.. -++.+.|++..|++...++.++|++
T Consensus 168 qaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 66554 233344433 3444556666777766666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-06 Score=83.63 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=43.3
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC--CC-cccHHHHHHHHHhcCCchHH
Q 043637 152 SSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN--KN-AVSWNVIVRRYLVAGNGKEA 228 (693)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a 228 (693)
+.+..|+++.|...|-+.+... ++|...|+.-..+|++.|++++|.+=-..-.+ |+ ...|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3445566666666665555544 23555555555566666665555443332222 22 22355555555555555555
Q ss_pred HHHHHHHHH
Q 043637 229 VVMFFKMLR 237 (693)
Q Consensus 229 ~~~~~~m~~ 237 (693)
+.-|.+=.+
T Consensus 90 ~~ay~~GL~ 98 (539)
T KOG0548|consen 90 ILAYSEGLE 98 (539)
T ss_pred HHHHHHHhh
Confidence 555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-05 Score=71.99 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.+-.++...|++-+|++...+.. . +.|+.++..-..+|..-.+++.|+.-|+++.+++|+|
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 33444445555555555555443 1 2224444444555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-08 Score=80.44 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP- 641 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 641 (693)
..++++..+ +.|+. +..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|+..|++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356667666 56654 45567788889999999999998874 344567788888889999999999999998875
Q ss_pred -CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 642 -FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 642 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+.++..+..++.++...|+.++|+..+++++++.|+++..+.+.+++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4566778888888899999999999999999999999998888877653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-07 Score=86.00 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=129.4
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-CCHHHHHHHHHHhcccCChH
Q 043637 417 LLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-R-PSKFTFETLLAACANISSLE 494 (693)
Q Consensus 417 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-p~~~~~~~ll~~~~~~~~~~ 494 (693)
+.+++...|+.+.++..+.... .|.......+...+...++-+.++.-+++..... . .+..........+...|+++
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 3444555555554433332222 3333333333322222233444454444443333 2 22222233334456667777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--CCHHH---HHHHHHHHHhCCChHHHHHHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS--LDVII---CNSMILGFCHNERGREALEVFGLM 569 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 569 (693)
.|.+++... .+.......+.+|.+.++++.|.+.++.+.+ .|... ..+.+......+++++|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 776665432 2455666677778888888888888877762 23221 222233333344699999999998
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCC-CCCCHH
Q 043637 570 KKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM-KELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 570 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~~~ 647 (693)
.+. ..++..+.+.+..++...|++++|.+++++..+ ..+-++.+...++-+....|+. +.+.+.+.++. ..|+-+
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 775 567888899999999999999999999999874 3444677777888888888888 66778888886 355544
Q ss_pred h
Q 043637 648 M 648 (693)
Q Consensus 648 ~ 648 (693)
.
T Consensus 271 ~ 271 (290)
T PF04733_consen 271 L 271 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-05 Score=70.75 Aligned_cols=289 Identities=11% Similarity=0.007 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCcccHHHHH---HHHHhC
Q 043637 281 VLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIV---SGYAISGRIREARELFNEMPERNVISWNAML---AGYTRS 354 (693)
Q Consensus 281 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~ 354 (693)
-.--+...+...|++..|+.-|....+-|+..|.++- ..|...|+...|+.-|..+.+..+..+.+-+ ..+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344566677788888888888888877777666654 4677788887887777777663333333322 346778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH--hh------------HHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043637 355 LLWKEALDFVFLMRKTTKDIDQ--VT------------LGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDM 420 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~~~~p~~--~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (693)
|.++.|..-|+...+....-+. .. ....+..+...|+...+......+.+.. +.+...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 8888888888888765321111 00 1112222333444444444444444332 2344444444444
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
|...|.+..| +.-++...+....+..++.-+-..+...|+.+......
T Consensus 199 ~i~~~e~k~A--------------------------------I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 199 YIAEGEPKKA--------------------------------IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHhcCcHHHH--------------------------------HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444544444 44444433333333333334444444444444444444
Q ss_pred HHHHHhCCCcchhH----HHHH---------HHHHHhhCCHHHHHHHHhcCC--CCC--H---HHHHHHHHHHHhCCChH
Q 043637 501 CFVIRNCYEINVVC----RGAL---------VEVYTKCCCLEYAIRVFKESS--SLD--V---IICNSMILGFCHNERGR 560 (693)
Q Consensus 501 ~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~--~~~--~---~~~~~l~~~~~~~g~~~ 560 (693)
++..+. +|+... |..+ +......++|.++++-.+... .|. . ..+..+-.++...|++.
T Consensus 247 RECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 333332 121110 1100 011233455666666555544 222 1 13444556677778888
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+|++...+.++ +.|| ..++.--..+|.-..+++.|+.-++.+.+
T Consensus 325 eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99888888888 6776 67777778888888889999988888874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00014 Score=72.73 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCC-cch--hHHHHHHHHHHh
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE-INV--VCRGALVEVYTK 524 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~ 524 (693)
.+...+...|++++|.+.+++.....+.+...+..+..++...|++++|...+++....... ++. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445566666666666666665555444555555566666666666666666665553221 111 223345555555
Q ss_pred hCCHHHHHHHHhcC
Q 043637 525 CCCLEYAIRVFKES 538 (693)
Q Consensus 525 ~~~~~~A~~~~~~~ 538 (693)
.|++++|...+++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-06 Score=81.83 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=160.6
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-C-CChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-R-RDKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
.|++..|.-.|+..++.+ |.+...|..|.......++-..|+..+.+.+. + .+..+.-.|.-.|...|.-..|+..+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444433 44566666677777777777777777777766 3 36667777778888888888888888
Q ss_pred HHhhhCCCCC---------HHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 467 SEMQWETRPS---------KFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 467 ~~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
+.-....+|- ...-.. ..+..........++|-++.. .+..+|+.+...|.-.|--.|+++.|...|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 7753221110 000000 112222333444555555444 5556788888888888999999999999998
Q ss_pred cCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC---
Q 043637 537 ESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYG--- 609 (693)
Q Consensus 537 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 609 (693)
... +.|..+||.|...++...+.++|+..|.+.++ +.|+. .....|.-+|...|.+++|...|-.++.-..
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 766 66778999999999999999999999999999 78985 5666777789999999999888777653111
Q ss_pred -----CCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 610 -----IIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 610 -----~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
..++..+|..|=.++.-.++.|-+...
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 111234666666666666666644443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00013 Score=72.92 Aligned_cols=254 Identities=8% Similarity=-0.022 Sum_probs=151.3
Q ss_pred HHHcCChHHHHHHHHhhcC-CC-ChhhHHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 421 YRKCGNLRSARIWFYQMSQ-RR-DKVSWNA---VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+...|++++|...+.+.+. .| +...+.. ........+....+.+.+.......+........+...+...|++++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3445666666555555443 22 2222221 11111123444555555554111113334455566778889999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----CCH--HHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS-----LDV--IICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
|...+++..+.... +...+..+..++...|++++|...+++..+ ++. ..|..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999996644 466778889999999999999999998762 222 2456788899999999999999999
Q ss_pred HHHCCC-CCChHHH-H--HHHHHHhccCcHHHHHHHHHHhHHh--cCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 569 MKKEGI-KPDHITF-H--GILLACIHEGNVKLALQFFDSMRCK--YGI--IPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 569 m~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
...... .+..... + .++.-+...|..+.+.+. +.+... ... ..........+.++...|+.++|...++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 865321 1112111 1 223333444432222222 212110 011 111122235677788999999999999877
Q ss_pred CC---C----CC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 641 PF---N----PT----VPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 641 ~~---~----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.. . +. ....-....++...|+.++|.+.+..++.+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 41 1 11 1122223344557899999999999888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00019 Score=69.97 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=79.3
Q ss_pred HHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--C-CcccHHHHHHHHHhCCChhh
Q 043637 50 QLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--R-DGGSWNAMLGAYTQNGFPGR 126 (693)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 126 (693)
.+....|++..|...|.......++ +...|+.-..+|++.|++++|.+--.+-.+ | -+..|+....++.--|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567789999999999999998865 888889999999999999999876655443 3 24579999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 127 TLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 127 a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
|+..|.+-.+.. +-+...++.+..+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999998877753 33444555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00017 Score=82.18 Aligned_cols=257 Identities=8% Similarity=-0.060 Sum_probs=142.2
Q ss_pred HHHHHcCChHHHHHHHHhhcCC-C--Ch----hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC--HHHHHHHHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQR-R--DK----VSWNAVLTGYARRGQSEEAMTSFSEMQWE----TRPS--KFTFETLLA 485 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~-~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~p~--~~~~~~ll~ 485 (693)
..+...|++++|...+.+.... + +. ...+.+...+...|++++|...+++.... +.+. ..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3345566777766666554431 1 11 23344555566677777777777665322 1111 223444555
Q ss_pred HhcccCChHHHHHHHHHHHH----hCCC--c-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC------C--CHHHHHHHH
Q 043637 486 ACANISSLEQGKQIHCFVIR----NCYE--I-NVVCRGALVEVYTKCCCLEYAIRVFKESSS------L--DVIICNSMI 550 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~ 550 (693)
.+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+... + ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 66777888887777766554 1211 1 122333445556667888888777766431 1 122344455
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCC-CChHHH-----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIK-PDHITF-----HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE----HYECM 620 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l 620 (693)
......|+.+.|...+++.....-. .....+ ...+..+...|+.+.|...+..... ....... .+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHHHHHHH
Confidence 6667778888888877776542100 011111 0112334456777888777766542 1111111 13456
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMPF----NPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
..++...|+.++|...+++... .+. ......+..++...|+.++|...+++++++-.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 6677778888888887776631 111 12344455667778888888888888887654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-06 Score=73.34 Aligned_cols=124 Identities=9% Similarity=0.003 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--hH
Q 043637 556 NERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY-CRYGY--MK 631 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~ 631 (693)
.++.+++...+++..+ ..| |...|..+...|...|++++|...+++..+ -.+.+...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4455666666666666 344 446666666777777777777777777764 2233566666666653 55565 47
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 632 ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 632 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+|..++++.. .+.+...+..+...+...|++++|+..++++++++|.+....
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777764 344556666677777777777777777777777777655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-05 Score=72.99 Aligned_cols=221 Identities=10% Similarity=-0.014 Sum_probs=119.8
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH--
Q 043637 452 GYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL-- 528 (693)
Q Consensus 452 ~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 528 (693)
.+...++.++|+....++....+-+...+..-..++...| +++++...++++.+.+.+ +...|+....++.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3444555666666666655554444444444444444444 456666666666654443 333344443334444432
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc---Cc----HHHH
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHE---GN----VKLA 597 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~---g~----~~~A 597 (693)
++++.+++++. +.+..+|+.....+...|+++++++.++++++. .| |...|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 44555555544 445566776666777777777777777777773 34 335555544444332 21 2455
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-----------
Q 043637 598 LQFFDSMRCKYGIIPQLEHYECMIKLYCRY----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG----------- 660 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g----------- 660 (693)
++...+++. -.+-|...|+.+...+... ++..+|..++.+.. ...++..+..+++.|....
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 666655553 2333455566666666552 33455666666543 2334556666666665421
Q ss_pred -------CccHHHHHHHHHhhcCC
Q 043637 661 -------YATLGEWAARRLNELNP 677 (693)
Q Consensus 661 -------~~~~A~~~~~~~~~~~p 677 (693)
..++|..+++.+-+.+|
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCc
Confidence 23668888888866666
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-05 Score=65.98 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVK 595 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 595 (693)
..|...|++++|++..+..........+ +..+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhh
Confidence 4456666666666666663333333332 2334455566666666666666 22 33455544444432 34566
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-CccHHHHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG-YATLGEWAARRL 672 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 672 (693)
+|.-+|++|.+ ...|++.+.+-...++...|++++|..++++.. ...++.++..++-.-...| +.+--.+.+.++
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 66667777653 466666666666666666777777777666664 2334444433333333333 333334455555
Q ss_pred hhcCCCCC
Q 043637 673 NELNPWAP 680 (693)
Q Consensus 673 ~~~~p~~~ 680 (693)
....|+++
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 55566544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-05 Score=76.61 Aligned_cols=200 Identities=8% Similarity=-0.082 Sum_probs=147.9
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCh--H
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC-CLEYAIRVFKESS---SLDVIICNSMILGFCHNERG--R 560 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--~ 560 (693)
+...+..++|.....++++..+. +...|+....++...| .+++++..++++. +.+..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 34456788888888888885544 4445555556666667 5799999998876 55566777666666666663 6
Q ss_pred HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCh----HH
Q 043637 561 EALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY---GYM----KE 632 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~ 632 (693)
+++.+++++.+ ..| |..+|.....++...|+++++++.++++++ .-.-+...|+....++.+. |.. ++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 78999999998 667 468899988999999999999999999986 3344556666666555554 323 45
Q ss_pred HHHHHHhCC--CCCCHHhHHHHHHHHHhc----CCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 633 LEDFVNRMP--FNPTVPMLRKIFDKCRKN----GYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 633 A~~~~~~~~--~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++...+++. .+.+...|..+...+... +...+|...+..+.+.+|+++.++-.|+.+|+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 666664443 456677888888888773 34567888999999999999999999999885
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=55.90 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 609 GIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 609 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=55.98 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=20.6
Q ss_pred CCCCchhhHhHHHHHhhcCCCHHHHHHHHhcc
Q 043637 173 GFCGNVILESSLVDAYGKCMVMTDARRMFDDI 204 (693)
Q Consensus 173 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 204 (693)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-06 Score=75.63 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-FNP----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+...|.+.|++++|+..+++.. ..| ....+..++.++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667888999999999888774 122 2457778889999999999999988887776663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0014 Score=74.78 Aligned_cols=360 Identities=12% Similarity=0.008 Sum_probs=219.4
Q ss_pred HHHHHHHHHHcCChhHHHhhhcCCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhCC
Q 043637 282 LGSLTEMYVKCGRLEDARGLLDQPDERNII--SWTSIVSGYAISGRIREARELFNEMPE----RNVISWNAMLAGYTRSL 355 (693)
Q Consensus 282 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 355 (693)
+......+...|++.+|............. ........+...|+.+.+...+..+.. .+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 334455566778877777666555443221 122223345567888888888877642 23333334445566788
Q ss_pred CHHHHHHHHHHHHHcCCC------CCHh--hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc----hhHHHHHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKD------IDQV--TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN----IFVSNALLDMYRK 423 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 423 (693)
+++++..++......--. +... .....-..+...|+++.+...++...+.--..+ ....+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999888877543111 1111 111222344578899999998888765311111 1234556666778
Q ss_pred cCChHHHHHHHHhhcCC------CC--hhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC---C-CHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQR------RD--KVSWNAVLTGYARRGQSEEAMTSFSEMQWE----TR---P-SKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---p-~~~~~~~ll~~~ 487 (693)
.|++++|...+.+.... +. ..++..+...+...|++++|...+++.... +. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 89999998887776541 11 224455666788899999999988876332 21 1 123344555667
Q ss_pred cccCChHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CC-CHHHH-----HHHHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRN----CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SL-DVIIC-----NSMILGF 553 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~-~~~~~-----~~l~~~~ 553 (693)
...|++++|...+.+.... +.......+..+...+...|+.++|...+.... .. ....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7789999999888887652 111123344456667788899999988877653 11 11111 1122344
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHh
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCK---YGIIPQ-LEHYECMIKLYCR 626 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~ 626 (693)
...|+.+.|.+.+............ ..+..+..++...|++++|...++++... .+..++ ..+...+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 5678899998888775542111111 11345567888899999999999988642 122222 2345667788889
Q ss_pred cCChHHHHHHHHhCC
Q 043637 627 YGYMKELEDFVNRMP 641 (693)
Q Consensus 627 ~g~~~~A~~~~~~~~ 641 (693)
.|+.++|...+.+..
T Consensus 744 ~G~~~~A~~~L~~Al 758 (903)
T PRK04841 744 QGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999988774
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-06 Score=84.42 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
++|--..-..+...+.+.|-..+|..+++.. ..|...+.+|+..|+..+|..+..+..+ .+|+...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 3444455566677777777777776655553 4567777777777777777777766655 47777777777777
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
.....-+++|.++.+..-.. .-..+.....+.++++++.+.++... +.-..+|-.+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 66666667776666554321 11122222334567777777776544 444556666666777777777777
Q ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 564 EVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.|..-.. +.||. ..|+.+-.+|.+.|+-.+|...+.+..+ .. .-+..+|...+....+.|.+++|++.++++.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77777766 56754 6677777777777777777777777763 34 3344456666666677777777777776653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-05 Score=83.87 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
++..+-.|.......|++++|+.+++...+ +.||. .....+..++.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555566666666666666666666666 55654 4444555666666666666666666653 233334445555
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CC-CCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP-FN-PTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..++.+.|++++|...|++.. .. .+...+-.+...+.+.|+.++|..+|+++++...+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 566666666666666666654 22 2244555556666666666666666666666544333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-06 Score=81.58 Aligned_cols=224 Identities=13% Similarity=0.008 Sum_probs=142.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHH
Q 043637 451 TGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEY 530 (693)
Q Consensus 451 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 530 (693)
.-+.+.|+..+|.-.|+...+..+-+...|..|.......++-..|...+.+..+..+. +......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 34667888888888888888777777888888888888888888888888888775443 55666667777777777777
Q ss_pred HHHHHhcCCCCCHH-HHHHHH--H-------HHHhCCChHHHHHHHHHH-HHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 043637 531 AIRVFKESSSLDVI-ICNSMI--L-------GFCHNERGREALEVFGLM-KKEGIKPDHITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 531 A~~~~~~~~~~~~~-~~~~l~--~-------~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
|...++......+. .|.... . .+.....+....++|-++ .+.+..+|+.....|.-.|.-.|++++|++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 77777765421111 111110 0 001111122333333333 334433556666666667777777777777
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 600 FFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 600 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.|+.+.. ++| |..+|+.|...+....+.++|+..++++. . +.-+...-.++-+|...|.+++|...+=.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 7777763 344 45567777777777777777777777664 2 3334455567777777777777777776666665
Q ss_pred CC
Q 043637 677 PW 678 (693)
Q Consensus 677 p~ 678 (693)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 53
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=81.29 Aligned_cols=226 Identities=9% Similarity=-0.023 Sum_probs=154.8
Q ss_pred HHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCChHHH
Q 043637 384 NVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
..+.+.|-...|..+++ ....+...+.+|+..|+..+|..+..+.+. .|+...|..+........-+++|
T Consensus 406 ell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHH
Confidence 34444555555555543 245677788888888888888777777777 46777777777777777777888
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
.++.+..... .-..+.....+.++++++.+-|+.-.+.+.- ...+|-.+.-+..+.++++.|...|....
T Consensus 477 wElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 477 WELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888765322 1122222334468888888888876664322 45556666667778888888888888766
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
+.+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++........|..+...
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~ 628 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLI 628 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHH
Confidence 4456688888888888888888888888888865 334456666777778888888888888887653333346666666
Q ss_pred HHHHHHh
Q 043637 620 MIKLYCR 626 (693)
Q Consensus 620 l~~~~~~ 626 (693)
++....+
T Consensus 629 iv~~~~~ 635 (777)
T KOG1128|consen 629 IVRTVLE 635 (777)
T ss_pred HHHHHHh
Confidence 6555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.5e-05 Score=80.53 Aligned_cols=240 Identities=12% Similarity=0.070 Sum_probs=181.5
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCCHHHHHHHHHHhcccCChHHHHHHHHH
Q 043637 429 SARIWFYQMSQRRD-KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-----RPSKFTFETLLAACANISSLEQGKQIHCF 502 (693)
Q Consensus 429 ~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 502 (693)
.|.+........|+ ...|-..|....+.++.++|.+++++....- .--...|.++++.-..-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 44344444444564 4568889999999999999999999875433 11123566666666666778888899998
Q ss_pred HHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-
Q 043637 503 VIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH- 578 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 578 (693)
+.+..- ...+|..|...|.+.++.++|.++++.|. ......|..++..+.+.++-+.|.+++.+..+ .-|..
T Consensus 1523 Acqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQE 1598 (1710)
T ss_pred HHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhh
Confidence 887432 34567889999999999999999999988 55677999999999999999999999999988 56652
Q ss_pred --HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCCHHhHHH
Q 043637 579 --ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-----NPTVPMLRK 651 (693)
Q Consensus 579 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 651 (693)
....-.+..-++.|+.+++..+|+.... ..+.....|+.+++.-.+.|+.+.++.+|++... ..-...|..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 3344455677889999999999999985 5666777899999999999999999999998742 223446777
Q ss_pred HHHHHHhcCCccHHHHHHHHHhh
Q 043637 652 IFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
++..-..+||-+.++.+=.++.+
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHH
Confidence 77776777876666555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.5e-05 Score=71.56 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=109.0
Q ss_pred HHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKL 596 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 596 (693)
.+...|+.++|+..++.+. +.|+..+......+...|+.++|.+.++++.. ..|+. .....+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 3456688888888888766 55666667777888999999999999999998 67874 556667789999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
|+.+++.... ..+-|+..|..|.++|...|+..+|..-. .+.+...|++++|+..++.+.+..
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999998874 67778888999999999999988887643 455667788888888877777744
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=67.41 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.++..+..+...+...|++++|...|++... +.| +...|..+..++...|++++|...++.+.+ -.+.++..+..
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQ 97 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHH
Confidence 3343455566777788888888888888877 556 456777777888888888888888888874 34456777777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..++.+.|+.++|+..+++..
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888887764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=72.86 Aligned_cols=183 Identities=11% Similarity=-0.021 Sum_probs=115.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH---HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch--hHH
Q 043637 441 RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK---FTFETLLAACANISSLEQGKQIHCFVIRNCYEINV--VCR 515 (693)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 515 (693)
.....+..+...+...|++++|...|+++....+.+. ..+..+..++...|+++.|...++.+.+....... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677778888889999999999998866553332 46677778888889999999999988875443221 123
Q ss_pred HHHHHHHHhh--------CCHHHHHHHHhcCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 043637 516 GALVEVYTKC--------CCLEYAIRVFKESS--SLDV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI 584 (693)
Q Consensus 516 ~~l~~~~~~~--------~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 584 (693)
..+..++... |+.++|.+.++++. .|+. ..+..+... ..+... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHHH
Confidence 3333344332 45555666555544 2221 111111100 000000 0 0011244
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+.+.|++++|+..++.+.....-.| ....+..++.++.+.|++++|...++.+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999986433333 35678889999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.9e-05 Score=65.93 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=103.8
Q ss_pred hcCChHHHHHHHHHhhhC---C--CCCH-HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH
Q 043637 455 RRGQSEEAMTSFSEMQWE---T--RPSK-FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL 528 (693)
Q Consensus 455 ~~~~~~~a~~~~~~~~~~---~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (693)
...+.++.++++.++... + .|+. ..|..++-+....|..+.|...++.+...- +-+..+-..-.-.+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345678888888877422 2 3333 345556666677788888888888877643 21223222223334455666
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
++|.++++... +.|..++-.=+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 66666666665 344445555555555556666666666665553 34456666666666666666666666666665
Q ss_pred HhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYG---YMKELEDFVNRMP 641 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 641 (693)
- --+-++..+..+...+.-.| +.+-|.+.+.+..
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 22233444455555544333 3334555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=64.38 Aligned_cols=155 Identities=11% Similarity=0.002 Sum_probs=97.2
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNER 558 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 558 (693)
.+-..+...|+-+....+........ ..+......++....+.|++.+|...+.+.. ++|...|+.+..+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444455444444444332211 1233444445666666677777777776654 5667777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
.+.|..-+.+..+ +.|+ +..++.+...+.-.|+.+.|..++..... .-.-|..+-..+.......|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777 5564 46667777777777777777777777753 33335666667777777777777777766
Q ss_pred HhCC
Q 043637 638 NRMP 641 (693)
Q Consensus 638 ~~~~ 641 (693)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-05 Score=81.90 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=88.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-CChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-RDKV-SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.+...+..|+..+...+++++|..+....+.. |+.. .|-.+...+.+.++..++..+ .++..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDS 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhh
Confidence 35667788888888888888888888766663 4433 344444456666665555444 22333
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
.....++.....+...+.+.+. +...+..+..+|.+.|+.++|...++++. +.|+.+.|.+...|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 3333344333334444443221 33355667777777777777777777766 45566777777777777 777777
Q ss_pred HHHHHHHH
Q 043637 564 EVFGLMKK 571 (693)
Q Consensus 564 ~~~~~m~~ 571 (693)
+++.+...
T Consensus 170 ~m~~KAV~ 177 (906)
T PRK14720 170 TYLKKAIY 177 (906)
T ss_pred HHHHHHHH
Confidence 77777665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00015 Score=78.31 Aligned_cols=197 Identities=10% Similarity=0.022 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQRR-------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL 483 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l 483 (693)
...|-..+......+++++|.++.++.+..- -...|.++++.-..-|.-+...++|++..+-. ..-..|..|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L 1536 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKL 1536 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHH
Confidence 3344444555555555555555555444421 12234444444444444444555555544321 112334455
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---C--CCHHHHHHHHHHHHhCCC
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---S--LDVIICNSMILGFCHNER 558 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~--~~~~~~~~l~~~~~~~g~ 558 (693)
...|.+.+++++|.++++.|.+.-- -...+|...++.+.+..+-+.|..++.+.. + .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 5555555555555555555554211 244455555555555555555555555433 1 123344444444455555
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.+++..+|+..... .| ....|+.+++.-.++|+.+.+..+|+++.. .++.|
T Consensus 1616 aeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~-l~l~~ 1667 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE-LKLSI 1667 (1710)
T ss_pred chhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCh
Confidence 55555555555542 23 234555555555555555555555555554 24444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.2e-06 Score=68.56 Aligned_cols=113 Identities=9% Similarity=-0.095 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 043637 565 VFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-- 641 (693)
Q Consensus 565 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 641 (693)
.+++... ..|+. .....+...+...|++++|...++.+.. ..+.+...+..+...|.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 45543 4455556677777778888877777764 234456667777777777788888877777663
Q ss_pred CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 642 FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 642 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+.+...+..+...+...|++++|...++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3444556666777777788888888888888888886655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00025 Score=62.68 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=110.5
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCH-HHHHHHHHHHH----hCC
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDV-IICNSMILGFC----HNE 557 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~----~~g 557 (693)
-...|++.+++++|.+...... +......=+.++.+..+++-|...++.|...|. .+.+.|..++. ..+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 3445677777777776665411 333444445666777888888888888885443 35665666554 345
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH-HH
Q 043637 558 RGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELE-DF 636 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~ 636 (693)
.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++... ....++.+...++-.-...|+..++. +.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 689999999999886 688899999999999999999999999999985 45566777777777777777776554 44
Q ss_pred HHhCC-CCCCHHh
Q 043637 637 VNRMP-FNPTVPM 648 (693)
Q Consensus 637 ~~~~~-~~~~~~~ 648 (693)
+.+.. ..|..+.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 55554 3444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-05 Score=66.56 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=141.2
Q ss_pred ccCChHHHHHHHHHHHH---hC-CCcchh-HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH
Q 043637 489 NISSLEQGKQIHCFVIR---NC-YEINVV-CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGR 560 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 560 (693)
...+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++... +.+..+-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 35678889999988876 34 334433 34455556677889999988888755 222222222223345678999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+|+++++.+.+.. +.|..++..-+-..-..|+.-+|++-+.+..+ .+..|.+.|..+...|...|++++|.--++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 33567888777777788888899998888885 67889999999999999999999999999988
Q ss_pred C-CCCC-HHhHHHHHHHHHhcC---CccHHHHHHHHHhhcCCCCCcch
Q 043637 641 P-FNPT-VPMLRKIFDKCRKNG---YATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 641 ~-~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
. .+|. +..+..+.+.+...| +..-|...|++.++++|.+..++
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 5 4554 445666777666544 77889999999999999655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.7e-05 Score=65.58 Aligned_cols=155 Identities=12% Similarity=-0.048 Sum_probs=127.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHE 591 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~ 591 (693)
..+...+...|+-+.+..+..... +.|....+.++....+.|++..|...+.+... +.| |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 445566777788777777777654 55666777899999999999999999999998 455 678999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
|+.+.|..-+.+..+ -..-++..++.+.-.|.-.|+++.|..++.... ...+......+.......|++.+|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999985 233346678999999999999999999998875 2346778888999999999999999877
Q ss_pred HHHhh
Q 043637 670 RRLNE 674 (693)
Q Consensus 670 ~~~~~ 674 (693)
..-+.
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00014 Score=64.65 Aligned_cols=125 Identities=4% Similarity=0.003 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
++.++++..++......+.+...|..+...+...|+++.|...+++..+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~----------------------------- 103 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR----------------------------- 103 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------
Confidence 334444444544444444445555555555555555555555555444433
Q ss_pred cCCCCCHHHHHHHHHHH-HhCCC--hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 537 ESSSLDVIICNSMILGF-CHNER--GREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 537 ~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
+.+...+..+..++ ...|+ .++|.+++++..+ ..|+ ...+..+...+.+.|++++|+..|+++.+ ..+|
T Consensus 104 ---P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~ 176 (198)
T PRK10370 104 ---GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD--LNSP 176 (198)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 33455555555553 45555 4777777777777 4553 45666666777777777777777777764 4455
Q ss_pred ChhHH
Q 043637 613 QLEHY 617 (693)
Q Consensus 613 ~~~~~ 617 (693)
+..-+
T Consensus 177 ~~~r~ 181 (198)
T PRK10370 177 RVNRT 181 (198)
T ss_pred CccHH
Confidence 54443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0082 Score=58.95 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=129.4
Q ss_pred hHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 459 SEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
.+...++++++.... ..-..+|...++..-+..-++.|..+|.++.+.+..+ .+.+.+++++.|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 556667777766555 4444577888888888899999999999999977666 7778888888776 477889999999
Q ss_pred cCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 043637 537 ESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYG-- 609 (693)
Q Consensus 537 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 609 (693)
-.. ..++.--...+.-+...++-..|..+|++....++.|+. ..|..++.--..-|+...+.++-+++..-+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 776 344555567788888999999999999999998888864 7899999988999999999999888765322
Q ss_pred CCCChhHHHHHHHHHHhcCChHH
Q 043637 610 IIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 610 ~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
..+....-..++..|.=.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 23222333444555554444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00066 Score=72.86 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=121.4
Q ss_pred HHcCCCC-CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhH
Q 043637 368 RKTTKDI-DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSW 446 (693)
Q Consensus 368 ~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 446 (693)
.-.+..| +...+..++..+...++++++.++.+...+.. +-....|-.+...+.+.++...+ ..+ .
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~-~lv-~---------- 88 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDS-NLL-N---------- 88 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhh-hhh-h----------
Confidence 3344555 45567788888889999999999999666543 33334444444477788887777 222 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
++..+....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+|+++.+..+. ++...|.+...|...
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~~-~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILLY-GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 333333344442223333333322 334457788888899999999999999999987743 788888888888888
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 043637 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH 578 (693)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 578 (693)
++++|.+++.+. +..+...+++..+.++|.++.+ ..|+.
T Consensus 164 dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d 202 (906)
T PRK14720 164 DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDD 202 (906)
T ss_pred hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCccc
Confidence 999998887653 3446666778888888888877 45543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=61.69 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL--EHYE 618 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~ 618 (693)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+..+ ...|.. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344555555 478888898889998885 3433 23334558889999999999999999863 322221 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPFNP-TVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.|..++...|++++|+..++.....+ .+..+...++.+...|+.++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 57888999999999999998875433 34466677889999999999999998764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0041 Score=58.32 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHhhcCCCChhh--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKVS--WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|+.+.|.+.|+.|+..|.... ...|.-.-.+.|..+.|..+-+.....-+--.......+...|..|+++.|.++.+
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 4666666666666666554332 22233333445555555555555444333334455555666666666666666665
Q ss_pred HHHH
Q 043637 502 FVIR 505 (693)
Q Consensus 502 ~~~~ 505 (693)
.-+.
T Consensus 213 ~~~~ 216 (531)
T COG3898 213 AQRA 216 (531)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.011 Score=58.23 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSS-NIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
.+.....++++...-..--..+|...++...+..-+..|+.+|.+..+.+..+ .+.+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566666666554333333566777787788888888888888888877766 77788888887764 55666667777
Q ss_pred hhcCC-CChhh-HHHHHHHHHhcCChHHHHHHHHHhhhCC-CCC--HHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 436 QMSQR-RDKVS-WNAVLTGYARRGQSEEAMTSFSEMQWET-RPS--KFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 436 ~~~~~-~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
--+.+ +|... -...+.-+...++-..+..+|++....+ .|+ ...|..++.--+..|+...+.++-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66654 44333 3456666777777777888888876665 333 35677777777777777777766665544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00035 Score=67.47 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI-LLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMI 621 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 621 (693)
..+--....+...|+.++|+..++.+.. -.|+..-|..+ ...+.+.++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 3344445556678899999999999998 46776555554 5899999999999999999974 4555 56667789
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
.+|.+.|++.+|+..++... .+.++..|..|..+|...|+..+|..+.-....+.-
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 99999999999999999886 566778999999999999999999998887776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00077 Score=71.61 Aligned_cols=127 Identities=8% Similarity=-0.045 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGF 553 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 553 (693)
...+..|.......|..++|..+++.+.+..++ +......+..++.+.+++++|+..+++.. +.+......+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 444445555555555555555555555543322 23333444455555555555555555544 23334445555555
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+.|++++|..+|+++.. ..|+ ..++..+..++...|+.++|...|+...+
T Consensus 165 ~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 165 DEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666665555 2333 35555555555555666666666655553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=71.51 Aligned_cols=93 Identities=10% Similarity=-0.077 Sum_probs=40.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHH
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGE 666 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~ 666 (693)
.+.++|.+|+..|.++++ -.+-|+..|..-..+|.+.|.++.|++-.+... . +.....|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344444444444444442 112233333344444444444444444444332 1 112234444455555555555555
Q ss_pred HHHHHHhhcCCCCCcch
Q 043637 667 WAARRLNELNPWAPFQF 683 (693)
Q Consensus 667 ~~~~~~~~~~p~~~~~~ 683 (693)
+.|+++++++|+++..-
T Consensus 170 ~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHhhhccCCCcHHHH
Confidence 55555555555444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00012 Score=71.35 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNV 594 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 594 (693)
..|+..+...++++.|..+++++...++.....++..+...++-.+|.+++++.... .| +...+..-...|.+.+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 344445555666667777776666444455555667777777777777777777763 44 344444445667777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.|+.+.+++.+ -.+-+..+|..|+.+|.+.|++++|+..++.++
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888777763 333345677777888888888888877777765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-06 Score=49.14 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.033 Score=58.46 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=45.1
Q ss_pred CCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh--ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHH
Q 043637 121 NGFPGRTLELFLDMNHSGVSANQITYANVLRSSA--EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (693)
.+++.+|+....++.+. .|+. .|..+++++. +.|..++|..+++.....+.. |..|...+-..|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34444555444444433 2222 2333333332 445555555555444443322 4445555555555555555555
Q ss_pred HHHhccCC--CCcccHHHHHHHHHhcCCch
Q 043637 199 RMFDDIQN--KNAVSWNVIVRRYLVAGNGK 226 (693)
Q Consensus 199 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 226 (693)
.++++..+ |+......+..+|.+.+++.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHH
Confidence 55555543 33222333334444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1e-05 Score=48.17 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCC
Q 043637 109 GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSA 141 (693)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 141 (693)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.018 Score=55.37 Aligned_cols=321 Identities=12% Similarity=0.066 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--------CCcccHHHHHHHHHhC--------C-------CHHHHHHHHHHHHHc-
Q 043637 315 SIVSGYAISGRIREARELFNEMPE--------RNVISWNAMLAGYTRS--------L-------LWKEALDFVFLMRKT- 370 (693)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~--------~-------~~~~a~~~~~~m~~~- 370 (693)
..++++...|++.+++.+++++.. -+..+|+.++-.+.++ . .++-++-+.++|...
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d 212 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFD 212 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHh
Confidence 345566666777677666666543 3556666544333321 1 122223333333221
Q ss_pred -----CCCCCHhhHHHHHHHHhcc--cchhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCChHHHHHHHHhhcC---
Q 043637 371 -----TKDIDQVTLGLILNVCAGL--SEIKMGKEVHGFIHRNDYSSNIF-VSNALLDMYRKCGNLRSARIWFYQMSQ--- 439 (693)
Q Consensus 371 -----~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 439 (693)
.+.|....+..++....-. ....--.++++.....-+.|+-. +...++.-+.+ +.+++....+....
T Consensus 213 ~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i 290 (549)
T PF07079_consen 213 QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKI 290 (549)
T ss_pred hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhH
Confidence 2455555555555544322 33444555555555555566543 33444444444 44444233332222
Q ss_pred ----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHH------HHHHHHHhc-c---cCChHHHHHHHHHHHH
Q 043637 440 ----RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFT------FETLLAACA-N---ISSLEQGKQIHCFVIR 505 (693)
Q Consensus 440 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~------~~~ll~~~~-~---~~~~~~a~~~~~~~~~ 505 (693)
+.-..++..++....+.++..+|-+.+.-+..-.+..... -..+-+..+ . ..+...-..+|+....
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 1234567788888888899998888887775543221111 111122222 1 1122333445555554
Q ss_pred hCCCcchhHHHHHH---HHHHhhCC-HHHHHHHHhcCC---CCCHHHHHHHHH----HHH---hCCChHHHHHHHHHHHH
Q 043637 506 NCYEINVVCRGALV---EVYTKCCC-LEYAIRVFKESS---SLDVIICNSMIL----GFC---HNERGREALEVFGLMKK 571 (693)
Q Consensus 506 ~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~----~~~---~~g~~~~A~~~~~~m~~ 571 (693)
..++- -.....|+ .-+-+.|. -++|+.+++.+. +.|...-|.+.. +|. ....+.+-+.+-+-+.+
T Consensus 371 ~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e 449 (549)
T PF07079_consen 371 YDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE 449 (549)
T ss_pred hcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44331 11122222 22444454 778888888766 555554443322 222 12234444555555667
Q ss_pred CCCCCC----hHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 572 EGIKPD----HITFHGIL--LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 572 ~g~~p~----~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.|+.|- ...-+.|. .-+..+|++.++.-.-..+. .+.|++.+|..++-++....++++|...+.+++
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888883 23444444 45678899999988777775 678999999999999999999999999999996
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID 375 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 375 (693)
.+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00023 Score=59.43 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=49.1
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGN 593 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 593 (693)
+...+...|++++|.+.++... +.+...|..+...+...|++++|...+++..+. .| +...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCC
Confidence 3344444444555544444432 334455556666666666666666666666653 34 34555555566666666
Q ss_pred HHHHHHHHHHhHH
Q 043637 594 VKLALQFFDSMRC 606 (693)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (693)
+++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=71.01 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=83.1
Q ss_pred hHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChH
Q 043637 81 NRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELG 160 (693)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 160 (693)
..+++.+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++..+.. +-|...+..-.+.|...++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3455666666777777777777777666666667777777777777777777776542 345555555566666777777
Q ss_pred HHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 161 VSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
.|.++.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777653 3344567777777777777777777666665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRP 242 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 242 (693)
.+|+.+|.++++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888999999998888877
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=58.94 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHhHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT----VPMLRKIF 653 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 653 (693)
++..+...+.+.|++++|.+.++.+....+-.+ ....+..++.++.+.|++++|...++++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445555666666777777777766664211111 13345556666777777777777776653 1122 33455666
Q ss_pred HHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 654 DKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
.++...|+.++|...++.+++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 677777777777777777777777665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.05 Score=57.14 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=130.8
Q ss_pred hcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHH--hccCChhhHHHhhccCCC---CCcccHHHHHHHHHhCCChhhH
Q 043637 53 ASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECY--GKCGNLDDARGLFDEMPE---RDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 127 (693)
...+++..|..-...+.+.- |+. .+..++.++ .+.|+.++|..+++.... .|..+...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34577888888888877664 332 233444444 478999999999987754 3677888999999999999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC----------CHHHH
Q 043637 128 LELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM----------VMTDA 197 (693)
Q Consensus 128 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----------~~~~A 197 (693)
..+|++.... -|+..-...+..++.+.+++.+-.+.-=++-+ .++.+...+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999876 57788888888899988887665555444444 23445555555555544321 11223
Q ss_pred HHHHhccCCCC--ccc---HHHHHHHHHhcCCchHHHHHHH-HHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHH
Q 043637 198 RRMFDDIQNKN--AVS---WNVIVRRYLVAGNGKEAVVMFF-KMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVII 271 (693)
Q Consensus 198 ~~~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (693)
.+.++.+.+.. ..+ .......+-..|++++|++++. .....-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444322 111 1111233345566777777763 33222222233333344455555566666666555555
Q ss_pred Hhc
Q 043637 272 KID 274 (693)
Q Consensus 272 ~~g 274 (693)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=70.83 Aligned_cols=140 Identities=13% Similarity=-0.034 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHhC--C---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 043637 540 SLDVIICNSMILGFCHN--E---RGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE--------GNVKLALQFFDSMR 605 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 605 (693)
+.+...|..++++.... + +.+.|..+|++..+ ..|+. ..|..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56667777777664432 2 37789999999999 78875 4555444433221 22344555555443
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.......++..|..+.-.+...|++++|...++++. .+|+...|..++..+...|+.++|...+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 211244456778878777778899999999999885 4667778888899999999999999999999999998774
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00092 Score=56.31 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPS---KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
.++...+.+.++.+....+.+ ......+...+...|++++|...|+.+......+...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~------------------- 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK------------------- 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH-------------------
Confidence 555666666666665544222 2223334445555666666666666666544222211
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 533 RVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
......+...+...|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 85 ----------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 ----------PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112233445555556666666665442221 11223334444566666666666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=71.85 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=73.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
-...+...|++++|++.|++.++ +.|+ ...|..+..+|...|++++|+..++++.+ -.+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 35566777888888888888888 5664 46677777888888888888888888874 2333566777788888888
Q ss_pred CChHHHHHHHHhCC-CCCCHHhHHHHHH
Q 043637 628 GYMKELEDFVNRMP-FNPTVPMLRKIFD 654 (693)
Q Consensus 628 g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 654 (693)
|++++|+..|++.. ..|+.+....++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 88888888888774 3444443333333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.8e-05 Score=54.22 Aligned_cols=61 Identities=13% Similarity=-0.029 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+...+.+.|++++|+..|++.. .+.+...+..++.++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888774 233555777788888888899999999999999888775
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00028 Score=54.56 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCc
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 662 (693)
...+...|++++|...++++.+ ..+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444444444444444432 111222333444444444444444444444332 122223444444455555555
Q ss_pred cHHHHHHHHHhhcCC
Q 043637 663 TLGEWAARRLNELNP 677 (693)
Q Consensus 663 ~~A~~~~~~~~~~~p 677 (693)
++|...++.+++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=63.23 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=78.2
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHH----CCCCCC--hHHHHHHHHHHhcc
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-ERGREALEVFGLMKK----EGIKPD--HITFHGILLACIHE 591 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~ 591 (693)
++.|...|++..|-..+ ..+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 34455555555554443 3456666666 777777777777654 22 221 24455666777888
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHhCC-CCC----C--HHhHHHHHHHHHh
Q 043637 592 GNVKLALQFFDSMRCKYGIIP-----QLE-HYECMIKLYCRYGYMKELEDFVNRMP-FNP----T--VPMLRKIFDKCRK 658 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~--~~~~~~l~~~~~~ 658 (693)
|++++|.++|+++... .... +.. .+-..+-++...|+...|...+++.. ..| + ..+...++.+|..
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8888888888877642 2211 111 22333445666788888888887653 111 1 2255566666654
Q ss_pred c--CCccHHHHHHHHHhhcCCC
Q 043637 659 N--GYATLGEWAARRLNELNPW 678 (693)
Q Consensus 659 ~--g~~~~A~~~~~~~~~~~p~ 678 (693)
. ..+..+..-|..+.+++|.
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---HH
T ss_pred CCHHHHHHHHHHHcccCccHHH
Confidence 2 2455555555555555553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=63.00 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA-CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
.+|-.++....+.+..+.|..+|++..+.+ ..+...|...... +...++.+.|.++|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467788888888888999999999998642 2234555555544 3335777779999999996 45667788888999
Q ss_pred HHHhcCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 623 LYCRYGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+.+.|+.+.|..+|++... -+ ...+|..++..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998852 22 345899999999999999999999999999999744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00087 Score=58.46 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
...+..+...+...|++++|...|++..+.+-.+. ...+..+...+.+.|++++|...++++.+ -.+-+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34567777778888888888888888876432222 25677777888888888888888888774 222345556666
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
...|...|+...+..-+++.. ..+++|.+.++++++.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh
Confidence 777777777666554332221 13577889999999999976
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=54.56 Aligned_cols=79 Identities=8% Similarity=0.170 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEGIKP---DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.|+++.|+.+++++.+. .| +...+..+..++.+.|++++|..+++.... +. .+......++++|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHH
Confidence 46778888888888773 44 234455567788888888888888877211 11 223444455777888888888
Q ss_pred HHHHHHh
Q 043637 633 LEDFVNR 639 (693)
Q Consensus 633 A~~~~~~ 639 (693)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8887764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.3e-05 Score=43.29 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDI 240 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 240 (693)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0001 Score=55.22 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=52.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCccHHHHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTV-PMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
.|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|..++++....+.. ...-.++.++.+.|++++|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57788888888888764222234445555788888888888888888774322322 33334566777788888888877
Q ss_pred HHH
Q 043637 670 RRL 672 (693)
Q Consensus 670 ~~~ 672 (693)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.9e-05 Score=54.79 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=35.4
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhH
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPML 649 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 649 (693)
.+.|++++|+++++++.. ..+-+......++.+|.+.|++++|..+++++. ..|+.+.+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 356677777777777764 233355556666677777777777777776664 34443443
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.9e-05 Score=43.14 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCC
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGV 139 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 139 (693)
+||.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0019 Score=53.23 Aligned_cols=103 Identities=7% Similarity=-0.049 Sum_probs=73.3
Q ss_pred HhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 535 FKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 535 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
+..+. +.+....-.+..-+...|++++|.++|+-+.. +.|.. .-|..|.-+|-..|++++|+..+..+.. --+-
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~d 101 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKID 101 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC
Confidence 33444 34444555566677788888888888888877 66754 5566666777778888888888888874 2234
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
|+..+-.+..++...|+.+.|++.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57777788888888888888888887653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=52.22 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-CccHHHHHHHHHhhcCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG-YATLGEWAARRLNELNP 677 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 677 (693)
++..|..+...+.+.|++++|+..|++.. .+.++..+..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566777777777778888777777664 3445667777778888888 68888888888888887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=52.38 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=76.5
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEG 592 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 592 (693)
.+...+...|++++|..+|+-.. +.+..-|-.|..++...|++++|+..|..... +.|| +..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 34455667888888888888766 55666788899999999999999999999999 5664 688888999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCC
Q 043637 593 NVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p 612 (693)
+.+.|.+.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999999999886444333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.01 Score=56.55 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC---C---CCH-HHHHHHHHHhcccCChHHHHHHHHHHHHh--CCCcc--hh
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWET---R---PSK-FTFETLLAACANISSLEQGKQIHCFVIRN--CYEIN--VV 513 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 513 (693)
.+..+...+.+.|++++|.++|+++.... + .+. ..|...+-++...||...|...+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 35556777888888888888888875443 1 111 12233333555568888888888877653 22222 34
Q ss_pred HHHHHHHHHHh--hCCHHHHHHHHhcCCCCCHHHHHHHH
Q 043637 514 CRGALVEVYTK--CCCLEYAIRVFKESSSLDVIICNSMI 550 (693)
Q Consensus 514 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~l~ 550 (693)
....|++++.. ...++.|..-|+.+.+.|...-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 45566666654 35677788888887777766544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0021 Score=52.10 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYEC 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 619 (693)
++..++..+...|++++|.+.|+++.+. .|+ ...+..+..++.+.|+++.|...++.+.....-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555667777788888888888888763 343 23555677788888888888888888765322211 2455677
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..++.+.|+.++|...++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHH
Confidence 7778888888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00079 Score=51.13 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhCCC-CCCHhhHHHHHHHhhccC--------ChHHHHHHHHHHHHhCCCCchhhH
Q 043637 111 WNAMLGAYTQNGFPGRTLELFLDMNHSGV-SANQITYANVLRSSAEEL--------ELGVSKQLHGLIVKRGFCGNVILE 181 (693)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 181 (693)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 999999999999988654 244567889999999999999999
Q ss_pred hHHHHHhhc
Q 043637 182 SSLVDAYGK 190 (693)
Q Consensus 182 ~~l~~~~~~ 190 (693)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.09 Score=53.56 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred HcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 043637 291 KCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE-----RNVISWNAMLAGYTRSLLWKEALDFVF 365 (693)
Q Consensus 291 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (693)
--|.+++|++++-++.++|. .|..+.+.|++-...++++.-.. .-...|+.+...+.....|++|.+.|.
T Consensus 746 ~~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988888764 35566677787777777766433 123568888888888888888888876
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhh
Q 043637 366 LMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVS 445 (693)
Q Consensus 366 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (693)
.-... ...+.++.+...+++.+.+.. .++.+....-.+.+++.+.|.-++|.+.+.......
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 53221 223444444444444433332 245566777778888888888888866665543322
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
.-+..|...+++.+|.++-++.
T Consensus 883 --aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 1244566666777777766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.17 Score=51.64 Aligned_cols=220 Identities=13% Similarity=0.027 Sum_probs=109.8
Q ss_pred hhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhh-CCCCCCHhhHHHH------HHHhhccCChHHHHHH
Q 043637 93 LDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH-SGVSANQITYANV------LRSSAEELELGVSKQL 165 (693)
Q Consensus 93 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~l------l~~~~~~~~~~~a~~~ 165 (693)
+++|.++.+. .|.+..|..+.......-..+-|...|-+... .|++.-...-... ....+-.|++++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 3444444332 34455566555555555555555555544332 1221111000000 0111234667777777
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC-----CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK-----NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDI 240 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 240 (693)
+-++-+.. ..|..+.+.||+-...++++.-... -..+|+.+...++....|++|.+.|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 65554332 3455666777777777776654321 123477777777777777777777665321
Q ss_pred CCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHH
Q 043637 241 RPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGY 320 (693)
Q Consensus 241 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 320 (693)
. ...+.++.+..++++-+.+.. .++.+....-.+.+++.+.|.-++|...+-+-..|. ..+..|
T Consensus 825 ---~---e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tC 888 (1189)
T KOG2041|consen 825 ---T---ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTC 888 (1189)
T ss_pred ---h---HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHH
Confidence 0 112222322222222222211 224455555666777777777777766654433332 234556
Q ss_pred HhcCCHHHHHHHHhhCCCCCcc
Q 043637 321 AISGRIREARELFNEMPERNVI 342 (693)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~ 342 (693)
...++|.+|.++-+...-|.+.
T Consensus 889 v~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHhccchhHH
Confidence 6666777777776665544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=49.86 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++.... -.+.+...+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHH
Confidence 44556666777778888888877776 3443 35566666777777888888888877764 2333445667777777
Q ss_pred HhcCChHHHHHHHHhC
Q 043637 625 CRYGYMKELEDFVNRM 640 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~ 640 (693)
...|+.++|...+++.
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 7788888887777655
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.063 Score=51.22 Aligned_cols=154 Identities=10% Similarity=-0.075 Sum_probs=100.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch-hHHHH----------HH
Q 043637 451 TGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV-VCRGA----------LV 519 (693)
Q Consensus 451 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----------l~ 519 (693)
.++.-.|++++|..+--.+.+....+......=..++...++.+.+..-|++..+.++.... ..... -.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34566788888877776666555444444433344455667778888777777664432111 11111 11
Q ss_pred HHHHhhCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc
Q 043637 520 EVYTKCCCLEYAIRVFKESS-------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE 591 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 591 (693)
+-..+.|++.+|.+.|.+.. .++...|.....+..+.|+.++|+.--++..+ +.|.. ..|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 22346788899999998876 34455777778888889999999988888777 55543 3444444677778
Q ss_pred CcHHHHHHHHHHhHH
Q 043637 592 GNVKLALQFFDSMRC 606 (693)
Q Consensus 592 g~~~~A~~~~~~~~~ 606 (693)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999988888875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=64.94 Aligned_cols=118 Identities=9% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCchhhhHHHHHHhccCChhhHHHhhccCCC-C-----CcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHH
Q 043637 74 TPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-R-----DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYA 147 (693)
Q Consensus 74 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 147 (693)
+.+......+++.+...-+++.+..++-+... | -..+..++++.|.+.|..+.++++++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34555556677777777777777777766643 2 23455688888888888888888888888888888888888
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 148 NVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=49.47 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
+.+..+.-+...|+...|.++-.+..-||...|..-+.+++..++|++-.++... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444455556677777787777777777777788888888888887766554321 1134667777778888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+|..+..++. +..-+..|.+.|++.+|.+.--+.+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 777777776531 1445677777788777776655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0027 Score=55.01 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=79.5
Q ss_pred CCCHhhHHHHHHHhh-----ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHH
Q 043637 140 SANQITYANVLRSSA-----EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNV 214 (693)
Q Consensus 140 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 214 (693)
..+..+|..++..+. +.|..+-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 345566666666555 457788888888999999999999999999988754 3221 11111111
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCc-chhHHHHHHHHH
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSP-YEGMQIHGVIIK 272 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 272 (693)
.- -.-.+-+-|++++++|...|+-||..|+..+++.+.+.+.. ....++.=+|.+
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 11245577899999999999999999999999999876653 234444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.016 Score=55.94 Aligned_cols=158 Identities=14% Similarity=0.035 Sum_probs=86.4
Q ss_pred HHHHhhCCHHHHHHHHhcCCCC-------CHHHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 043637 520 EVYTKCCCLEYAIRVFKESSSL-------DVIICNSMILGFCH---NERGREALEVFGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
-.|....+++...++++.+..+ ...+--..+-++-+ .|+.++|+.++..+....-.+++.+|..+.+.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3444445555555555544411 11122233444445 6777777777777555444556666666654442
Q ss_pred ----c-----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH----HHHHH---HhC-------CCCCCH
Q 043637 590 ----H-----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE----LEDFV---NRM-------PFNPTV 646 (693)
Q Consensus 590 ----~-----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-------~~~~~~ 646 (693)
. ....++|+..+.+.- .+.|+...-..++-.+.-.|...+ ..++- ... ....+-
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 1 223566777776653 344554443334444444443221 12211 110 023445
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+.++++++...||.++|.++++++.++.|+.-
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5667788999999999999999999999988543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=47.73 Aligned_cols=79 Identities=11% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------chhhHHHHHHHHHHhCCCCchhHHH
Q 043637 345 NAMLAGYTRSLLWKEALDFVFLMRKTTK-DIDQVTLGLILNVCAGLS--------EIKMGKEVHGFIHRNDYSSNIFVSN 415 (693)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (693)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++. +.-....+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887653 2445677889999999999999999
Q ss_pred HHHHHHHH
Q 043637 416 ALLDMYRK 423 (693)
Q Consensus 416 ~l~~~~~~ 423 (693)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.081 Score=48.82 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHH---HHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFT---FETLLAACANISSLEQGKQIHCFVIRNCYE 509 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 509 (693)
....+.+.|++++|.+.|+++....+-+... ...+..++.+.++++.|...+++.++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3445566788888888888876654322222 245567778888888888888888875443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=62.76 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=85.6
Q ss_pred chhhHhHHHHHhhcCCCHHHHHHHHhccCC-C-----CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHH
Q 043637 177 NVILESSLVDAYGKCMVMTDARRMFDDIQN-K-----NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANA 250 (693)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 250 (693)
+......+++.+....+++.+..++-+... | -..+..++|+.|...|..+.++.+++.=...|+-||..|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444445555555555566666665554432 1 2334568889999999999999999988889999999999999
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc
Q 043637 251 LFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKC 292 (693)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 292 (693)
++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877766666666666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.079 Score=53.44 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 236 (693)
++++++.|-.|+... +...++-.|++.+|.++|.+ .|.-..|+++|..|+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 455666665565543 33445566777777777644 455556666666553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=58.05 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=76.9
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCChHHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD---VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 562 (693)
-+.+.+++.+|...|.+.+...+. ++..|.--..+|.+.|.++.|++-.+.....| ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345677888888888888875444 66667777888888888888888888777444 34788888999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLA 587 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~ 587 (693)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999888 88988777666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.18 Score=48.40 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
+.+..+.-|...|+...|.++..+.. .|+..-|...+.+++..+++++-..+-.. ++++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 44444455555555555554433331 35555566666666666666655554433 3455566666666666666
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDF 363 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 363 (693)
..+|......+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555552 224445555666666655544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0078 Score=47.89 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLY 624 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 624 (693)
....++-..|+.++|+.+|++..+.|+... ...+..+...+...|++++|..++++....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355677788999999999999999887765 35677777899999999999999999886422211 222223345577
Q ss_pred HhcCChHHHHHHHHhCC
Q 043637 625 CRYGYMKELEDFVNRMP 641 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~~ 641 (693)
...|+.++|+.++-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88999999998886543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0073 Score=52.67 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHG 583 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 583 (693)
....+..+...+...|++++|...+++.. .++ ...+..+...+.+.|++++|...+++..+ ..|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 34556777888899999999999999876 222 35788899999999999999999999998 5675 466667
Q ss_pred HHHHHhccCcHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQF 600 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~ 600 (693)
+...+...|+...+..-
T Consensus 112 lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHcCChHhHhhC
Confidence 77888887775444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0027 Score=58.84 Aligned_cols=101 Identities=10% Similarity=0.043 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC---CHHhHHHHHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNP---TVPMLRKIFD 654 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~---~~~~~~~l~~ 654 (693)
|...+....+.|++++|...|+.+...+.-.+ .+..+..++..|...|++++|...|+++. .+. .+..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444555777777777777765322211 12345566777777777777777777664 111 1234444566
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+...|+.++|...++.+++..|+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666778888888888888888886553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0045 Score=60.99 Aligned_cols=86 Identities=8% Similarity=-0.009 Sum_probs=72.9
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
...+...|++++|+..|++.. +.+...|..+..++...|++++|+..++++++ +.|+ ...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 455677899999999998876 55677888888999999999999999999998 5674 57788888899999999
Q ss_pred HHHHHHHHHhHH
Q 043637 595 KLALQFFDSMRC 606 (693)
Q Consensus 595 ~~A~~~~~~~~~ 606 (693)
++|+..|+++.+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0032 Score=54.72 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.|..+...+...|++++|+..|++.....-.|. ..++..+...+...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555666666666665554211111 1345555555556666666666665555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0081 Score=56.94 Aligned_cols=140 Identities=10% Similarity=0.023 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH-hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA-CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
.+|..++...-+.+..+.|..+|.+....+..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3566777777777778888888888875544444445444444 33346666688888887764 233566677777777
Q ss_pred HhhCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESS--SLD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+.++.+.|..+|++.. -+. ...|..++.--.+.|+.+.+.++.+++.+ .-|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 77788888888887766 122 24777777777777888888888777777 4555444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0019 Score=55.86 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred HhhccC--CCCCcccHHHHHHHHHh-----CCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhcc--------------
Q 043637 98 GLFDEM--PERDGGSWNAMLGAYTQ-----NGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEE-------------- 156 (693)
Q Consensus 98 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-------------- 156 (693)
..|+.. ...+..+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44566677777777754 456666777888888889999999999988866542
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCC
Q 043637 157 --LELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMV 193 (693)
Q Consensus 157 --~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 193 (693)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688999999999999999999999998877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.27 Score=50.89 Aligned_cols=340 Identities=11% Similarity=0.016 Sum_probs=173.0
Q ss_pred cCCCCCChhHHHHH-----HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccC---ChhhHHHhhccCCC-
Q 043637 35 KSDEPVSYSLYAHL-----FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCG---NLDDARGLFDEMPE- 105 (693)
Q Consensus 35 ~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~- 105 (693)
+-|+|.+...|..| +..+...+.+..|.++...+-..-.+. ..++......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 34778887777764 666777788888888877763222122 455656666666542 22333333344444
Q ss_pred -CCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCC----CCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh
Q 043637 106 -RDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGV----SANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL 180 (693)
Q Consensus 106 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 180 (693)
....+|..+.+..-..|+.+.|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 4566788888888888999888888765443321 1223345566666667777776666655554321 1111
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHH---HHCCCCCCHHhHHHHHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKM---LREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~g~~p~~~~~~~ll~~~~~ 256 (693)
+...+ .+...|..++....+ .|..+ +..+.+.++-..++..|..- ...-+.+-........+++++
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 11111 122223333322221 11110 01111122222222211110 000011222222333334443
Q ss_pred CCCcch-hHH---------HHHHHH-HhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 257 LSSPYE-GMQ---------IHGVII-KIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 257 ~~~~~~-a~~---------~~~~~~-~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
...... ++. +.+.+. +.|.....-+.+-.+.-+..-|+..+|.++-.+..-||...|-.-+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 333111 111 111111 112223333344444555666777777777777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVH 399 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (693)
+++-+++-..... +.-|...+.+|.+.|+.++|.+++.+... . .-...++...|++.+|.++-
T Consensus 731 weeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 731 WEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 7766665554433 56667777777777777777777654321 1 14455666666666665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00046 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
.+..+...|...|++++|+..++++++.+|+|+..+..|+.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 566788999999999999999999999999999998888753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=46.63 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=26.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 555 HNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
..|++++|++.|+++.+ ..| +...+..+..+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666665555 334 33444455555566666666666665554
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00079 Score=48.75 Aligned_cols=64 Identities=14% Similarity=-0.004 Sum_probs=46.5
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
..|.+.+++++|+++++++. .+.++..+...+..+...|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46677777777777777774 34455567677777788888888888888888888877655443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.26 Score=47.76 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-ECM 620 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l 620 (693)
..+|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|++.-|..+|+.-.. .+ ||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KF-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hC-CCchHHHHHH
Confidence 4467777777777778899999999999988 5677888888887665 5788889999987664 23 444333 556
Q ss_pred HHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+..+.+-++-+.|..+|+... ...-.++|..++..-..-|+...+...-+++.+..|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777889999999999998553 23346789999998889999999999999999988864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.18 Score=50.99 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=63.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 536 KESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 536 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
.++...+..+...+..-+.+...+.-|.++|.+|-+ ...+++.....++|++|..+-+..- .+.||+.
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy 807 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP---EFKDDVY 807 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc---ccccccc
Confidence 333344445555555556666677778888877655 2356677788888888888877653 4455542
Q ss_pred -----------HHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 616 -----------HYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 616 -----------~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-|...-++|.++|+..||..+++++.
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 24444577899999999999999885
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.064 Score=45.11 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=79.5
Q ss_pred CCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHH
Q 043637 508 YEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HIT 580 (693)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~ 580 (693)
..|+....-.|.....+.|+..+|...|++.. -.|......+.++....+++..|...++++.+. +|+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCc
Confidence 44555556667777777777777777776654 456666777777777777777777777777663 242 233
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
...+.+.+...|++.+|...|+... ..-|++..-......+.+.|+.++|..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4445567777777777777777765 34455554444555666777666655433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.021 Score=58.98 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
..|..+.......|++++|...+++..+ +.|+...|..+...+...|+.++|.+.++++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555555 34554555555555555555555555555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=51.07 Aligned_cols=100 Identities=12% Similarity=-0.059 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
..|..+...+...|++++|+..+++........+ ...++..+...|.+.|++++|+..+++.. .+.....+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4445555566666666666666666653211111 12355666666666666666666666553 22223344444444
Q ss_pred HH-------hcCCcc-------HHHHHHHHHhhcCCC
Q 043637 656 CR-------KNGYAT-------LGEWAARRLNELNPW 678 (693)
Q Consensus 656 ~~-------~~g~~~-------~A~~~~~~~~~~~p~ 678 (693)
+. ..|+++ +|...+++.++.+|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 44 445544 455555556666663
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=52.66 Aligned_cols=101 Identities=12% Similarity=-0.049 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC--CCCCHHhHHH
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG---YMKELEDFVNRMP--FNPTVPMLRK 651 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~~~~~ 651 (693)
|...|..|..+|...|+++.|...|.+..+ -..+++..+..+..++..+. ...++..+|+++. ++.+.....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457777777777777777777777777764 33345555666666554322 3456777777764 4555556666
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 652 IFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+...+...|++.+|...++.+++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667777777777777777777766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=43.25 Aligned_cols=133 Identities=9% Similarity=-0.028 Sum_probs=73.1
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--C---CCHHHHHHHHHHHHhC
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--S---LDVIICNSMILGFCHN 556 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~---~~~~~~~~l~~~~~~~ 556 (693)
.+..+....|+..+|...|++....-+.-|....-.+.++....+++..|...+++.- + ..+..-..+.+.+...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 3334444444444444444444333333334444444444444444444444444332 0 1122334567788889
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE 618 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 618 (693)
|+..+|+..|+.... .-|+...-......+.++|+.+++..-+..+.. ....+...|.
T Consensus 174 g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d--~~~r~~~H~r 231 (251)
T COG4700 174 GKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD--TAKRSRPHYR 231 (251)
T ss_pred CCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH--HHHhcchhHH
Confidence 999999999999998 678876655556667788877776655555542 2333444454
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.16 Score=45.62 Aligned_cols=176 Identities=14% Similarity=0.036 Sum_probs=85.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET---RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
....+...|++.+|.+.|+.+.... +-.......++.++.+.|+++.|...++.+++..+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3455667888888888888886554 2334456667778888888888888888887754432222222222222211
Q ss_pred CCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 043637 526 CCLEYAIRVFKESSSLD-------VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 598 (693)
....... ....| ...+..++.-|-...-..+|...+..+.+. . ...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHH
Confidence 1111110 00111 112334444444444444554444443331 0 011122345666677777777
Q ss_pred HHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 043637 599 QFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 633 (693)
.-++.+.+++.-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777654322222 22344555666666666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.78 Score=47.72 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
....+.+.-+..+...|+..+|.++-.+..-||-..|..=+.++...+++++-+++-+.+. .+..|..+..+|.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 3344444555556666777777777777777777777777777777777776555443322 1455666777777
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
+.|+.++|.+++-+.. |. ...+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 7777777777765442 11 14567777777777776653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.008 Score=42.81 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC-cHHHHHHHHHHhHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEG-NVKLALQFFDSMRC 606 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 606 (693)
+...|..+...+...|++++|+..|++..+ +.|+ ...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777778888888888888777 4564 466667777777777 67888877777664
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.069 Score=47.61 Aligned_cols=132 Identities=10% Similarity=-0.066 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-----ECMI 621 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l~ 621 (693)
+.++..+.-.|.+.-...++++.++..-+-++.....|.+.-.+.||.+.|...|++..+. .-+.+.... ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4455555555666666666666666432234455555666666666666666666655432 222222222 2223
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..|.-++++.+|...++++. .+.++...++-.-...-.|+...|....+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33455566666666666664 22333333332222223455666666666666666643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.017 Score=54.67 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHH----hCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCC---------CCC
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIR----NCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESS---------SLD 542 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~ 542 (693)
...|..+.+.|.-.|+++.|....+.-.. .|-+. ....+..+.+++.-.|+++.|.+.|+... ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 35667777777778888888776654332 33222 23456667778888888888888887543 122
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH----CC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKK----EG-IKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+..+|...|.-..++++|+.++.+-.. .+ ..-....+++|..++...|..++|+.+.+...+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33556677777777778888877765332 11 112346788888888888888888887776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.12 Score=46.06 Aligned_cols=137 Identities=11% Similarity=0.032 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH---
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV--- 519 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 519 (693)
...++++..+.-.|.+.-.+..+.+..+.. +.++.....+.+.-...|+.+.|...|+++.+..-..+....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566677777788888888888888776 6667777888888888999999999999877644444444433333
Q ss_pred --HHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 043637 520 --EVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582 (693)
Q Consensus 520 --~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 582 (693)
..|.-++++..|...+.++. +.++..-|.=.-++.-.|+..+|++.++.|.+ ..|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34556677888888887776 44555556555566667888888888888888 566554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.024 Score=52.68 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYEC 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 619 (693)
.|...+....+.|++++|...|+.+.+ ..|+. ..+..+..+|...|++++|...|+.+..++...| .+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444444667899999999999988 45654 4667777899999999999999999986433332 2445556
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
++.++.+.|+.++|..++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6778888999999999998775
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0085 Score=42.01 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...+...|++++|.+.|+++.+. .|+ ...+..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666666666666663 353 35555555666666666666666666653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.079 Score=48.75 Aligned_cols=93 Identities=10% Similarity=0.057 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPD-HITFHG 583 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~ 583 (693)
|...|-.|..+|...|+.+.|..-|.... ++++..+..+..++.... ...++..+|+++.. ..|+ ..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence 34444444444444444444444444332 333444444444333221 23445555555555 3443 233334
Q ss_pred HHHHHhccCcHHHHHHHHHHhH
Q 043637 584 ILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4455555555555555555555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.22 Score=46.02 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP----F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.+.+.|.+.|.+.-|+.-++.+. . +.....+..+..+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34566888888887777777664 2 2223356667788888888888888776553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.017 Score=54.78 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC-CCh
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGLMKK----EGIK-PDH 578 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~ 578 (693)
..|..|.+.|.-.|+++.|+...+.-. ..-...+..+..++.-.|+++.|.+.++.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777889999987765422 11233677888999999999999998887543 3322 133
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHh---c-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCK---Y-GIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.+..+|.+.|.-..++.+|+.++.+-... . ...-....+.+|..+|...|..++|+.+.+.-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56667888888888999999887764321 1 11223456778889999999999998877643
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.046 Score=52.12 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=75.4
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHH-HHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCChHHHHH-------------
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVI-ICNSMIL--GFCHNERGREALEVFGLMKKEGIKPDHITFHG------------- 583 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~------------- 583 (693)
.++.-.++.++|.+.--.+.+.|.. .+..+++ ++--.++.+.|...|++.+. +.|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 3444555666665555444433322 2222222 22344556666666666555 4454322111
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHh--cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHH---HHHHHHh
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCK--YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRK---IFDKCRK 658 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~ 658 (693)
=.+-..+.|.+..|.+.+.+.+.. ...+|+...|.....+..+.|+.++|+.-.+... .-|+..+.. -..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHH
Confidence 112234566666676666666520 0222334455555556666677777666666554 222222222 2233334
Q ss_pred cCCccHHHHHHHHHhhcCC
Q 043637 659 NGYATLGEWAARRLNELNP 677 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p 677 (693)
.+++++|.+-++++.+.+.
T Consensus 334 le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5566666666666666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.071 Score=42.50 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC-CCC--HHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 450 LTGYARRGQSEEAMTSFSEMQWET-RPS--KFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 450 ~~~~~~~~~~~~a~~~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
..++-..|+.++|+.+|++....| ... ...+..+...+...|++++|..+++.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556677777777777766665 221 234455556666667777777766666553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=50.34 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|++.++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888888888888888888888887 67764 3477788888888888888888888775
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.11 Score=43.44 Aligned_cols=97 Identities=9% Similarity=-0.040 Sum_probs=65.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
...-+...|++++|..+|.-+.- ..| +..-|..|..+|-..+++++|+..+..... .+ .-|+..+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHh
Confidence 34445677888888888887777 445 334455556667777888888888887753 22 34444556677888888
Q ss_pred CChHHHHHHHHhCCCCCCHHhH
Q 043637 628 GYMKELEDFVNRMPFNPTVPML 649 (693)
Q Consensus 628 g~~~~A~~~~~~~~~~~~~~~~ 649 (693)
|+.+.|+..|+....+|....+
T Consensus 119 ~~~~~A~~~f~~a~~~~~~~~l 140 (165)
T PRK15331 119 RKAAKARQCFELVNERTEDESL 140 (165)
T ss_pred CCHHHHHHHHHHHHhCcchHHH
Confidence 8888888888777655544433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.042 Score=46.38 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHY 617 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 617 (693)
+...++..+...|++++|...++++.. ..| |...|..++.+|...|+...|.+.++++.. +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445567777888999999999999888 566 567888889999999999999998887743 46888887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.2 Score=42.72 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=149.9
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--hcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 344 WNAMLAGYTR--SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVC--AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 344 ~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
|..|-.++.. .|+-..|.+.-.+-.+. +.-|......++.+- .-.|+.+.+.+-|+.|....- ....-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HHHHhHHHHHH
Confidence 4445445444 56666666655443321 455666666666644 456899999999999875320 01111223333
Q ss_pred HHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCHH--HHHHHHHHh--cc-c
Q 043637 420 MYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSKF--TFETLLAAC--AN-I 490 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~--~~~~ll~~~--~~-~ 490 (693)
.-.+.|..+.|.+.-...... | -...+...+...|..|+++.|+++++.-.... .++.. .-..|+.+- +. .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 334668888885555555443 2 34567888889999999999999988765443 33321 222333221 11 1
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHH-HHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHH-HHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVVCR-GALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREA-LEVF 566 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A-~~~~ 566 (693)
.+...|...-.+..+ +.|+..-- ..-...+.+.|+..++-.+++.+- .|.+.++... ...+.|+.... ++-.
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcHHHHHHHH
Confidence 233333333333322 22222111 112344556666666666666555 3333333222 22333332111 1122
Q ss_pred HHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCCCCC
Q 043637 567 GLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR-YGYMKELEDFVNRMPFNP 644 (693)
Q Consensus 567 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 644 (693)
+++.. ++||. .+...+..+....|++..|..--+... ...|....|..|.++-.. .|+-.++..++-+....|
T Consensus 319 ~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 319 KKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22222 45543 444445555566666666555554443 345555566555555433 366666666665554444
Q ss_pred CHHhH
Q 043637 645 TVPML 649 (693)
Q Consensus 645 ~~~~~ 649 (693)
..|.|
T Consensus 394 rdPaW 398 (531)
T COG3898 394 RDPAW 398 (531)
T ss_pred CCCcc
Confidence 44444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.026 Score=55.26 Aligned_cols=69 Identities=10% Similarity=-0.038 Sum_probs=53.0
Q ss_pred CCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCc--hhhhHHHHHHhccCChhhHHHhhccCCC
Q 043637 37 DEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPV--FLLNRAIECYGKCGNLDDARGLFDEMPE 105 (693)
Q Consensus 37 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (693)
..|.+...++.+..+|...|++++|...|++.++.++.... .+|..+..+|...|+.++|++.+++..+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566688888888888899999999999988888754221 3477788888888888888888876654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.03 Score=46.58 Aligned_cols=96 Identities=8% Similarity=-0.123 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
.....--+...|++++|..+|.-+.. --.-++..+..|..++-..|++++|+..+.-.. ...|+.........+..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 33445566789999999999998874 233456667778888889999999999987553 33444444457888899
Q ss_pred cCCccHHHHHHHHHhhcCCCC
Q 043637 659 NGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.|+.+.|+..++.+.+ .|.+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999988 4544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.4 Score=43.15 Aligned_cols=137 Identities=14% Similarity=0.085 Sum_probs=88.0
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCc------hhhhHHHHHHhccCChhhHHHhhccCCCC-CcccHHHHHHHH--HhCC
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPV------FLLNRAIECYGKCGNLDDARGLFDEMPER-DGGSWNAMLGAY--TQNG 122 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~~ 122 (693)
+-+++++.++..+|.++.+..- .++ ...+.++++|. ..+.+.....+....+. ....|-.+..++ -+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 3467899999999999876532 222 23457788887 45666666666555442 345577776655 4678
Q ss_pred ChhhHHHHHHHhhhC--CCCC------------CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCC----CchhhHhHH
Q 043637 123 FPGRTLELFLDMNHS--GVSA------------NQITYANVLRSSAEELELGVSKQLHGLIVKRGFC----GNVILESSL 184 (693)
Q Consensus 123 ~~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 184 (693)
.+.+|++.+....+. +..| |-..=+..+..+...|++.++..+++.+...=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 889999888776554 3222 1112233455666788888888887777765443 677777776
Q ss_pred HHHhhc
Q 043637 185 VDAYGK 190 (693)
Q Consensus 185 ~~~~~~ 190 (693)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 666655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.031 Score=53.41 Aligned_cols=127 Identities=6% Similarity=-0.089 Sum_probs=73.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC-----CCCCC---------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 549 MILGFCHNERGREALEVFGLMKKE-----GIKPD---------HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
-...+.+.|++..|...|++.... +..+. ..++..+.-+|.+.+++..|++..++..+ --++|+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 356778888888888888886652 11221 11355555666677777777777777764 344556
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcC-CccHHHHHHHHHhhcCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNG-YATLGEWAARRLNELNP 677 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 677 (693)
.....-.++|...|+++.|+..|+++. ..| +..+-..+...-.+.. ..+....+|..|+..-+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666677777777777777777664 233 3333333333322222 22334566666666544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=42.99 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CC---CC-hhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYG-II---PQ-LEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.+++.+...|...|++++|+..+++..+... .. |+ ..++..+..+|.+.|++++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666677777777776666653110 11 11 22344445555555555555555443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.096 Score=42.22 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 573 GIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 573 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+.|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 366788888888888888888888888888888888877777778777654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.035 Score=39.98 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+.+.+++++|.++++++.. +.|+ ...+.....++.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345666677777777777776 4453 35555566667777777777777777664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.042 Score=49.42 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=84.0
Q ss_pred hHHHhhccCC--CCCcccHHHHHHHHHhC-----CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccC----------
Q 043637 95 DARGLFDEMP--ERDGGSWNAMLGAYTQN-----GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEEL---------- 157 (693)
Q Consensus 95 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---------- 157 (693)
.....|...+ ++|..+|-..+..+... +.++-....++.|++.|+.-|..+|..|++.+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566555 56778888888888644 566677788899999999999999999998775432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCH-HHHHHHHhccC
Q 043637 158 ------ELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVM-TDARRMFDDIQ 205 (693)
Q Consensus 158 ------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 205 (693)
+-+-+..++++|...|+-||..+-..|++++.+.|.. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 33444444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.4 Score=42.94 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.-+..++.++.-.|++++|.+..++|.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444455555555555555555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.052 Score=49.21 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=36.1
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 043637 555 HNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGY 629 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 629 (693)
+.|++..|...|...++. -|+ ...+.-|..++...|++++|..+|..+.++++-.|. ++.+-.|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 334455555555554442 121 122333444455555555555555544443333332 2334444444444444
Q ss_pred hHHHHHHHHhC
Q 043637 630 MKELEDFVNRM 640 (693)
Q Consensus 630 ~~~A~~~~~~~ 640 (693)
.++|..+|++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.02 Score=41.99 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP-----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
++..+...|.+.|++++|+..+++.. ..++ ..++..++..+...|++++|.+.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666666666666666666666542 1111 234555666666666666666666666553
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.77 Score=45.58 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKP--DHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
..+..++.+.|+.++|++.+++|.+. .++ +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555556666666666666666542 122 1234555666666666666666666654
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.2 Score=44.98 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCCH----HhHHHHHHHHHhcCCccHH
Q 043637 620 MIKLYCRYGYMKELEDFVNRMPF-NPTV----PMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A 665 (693)
+++.|.+.|.+..|..-++.+.. -|+. ..+..++.++.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34556667777766666665531 1221 2344556666666655543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.019 Score=33.76 Aligned_cols=33 Identities=12% Similarity=-0.098 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..+..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356778889999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.68 Score=39.75 Aligned_cols=131 Identities=7% Similarity=-0.070 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI--LLACIHEGNVKLALQFFDSMRCKYGIIPQLE----HYE 618 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~ 618 (693)
.|..++.... .+.. +.....+++....-......+..| ...+...+++++|...++.... .+.|.. .--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 3444555443 2233 555566666664212222333333 3788899999999999998763 222221 223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPFNPTVPM-LRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.|.+.....|.+|+|+..++....+.-.+. ...-++.+...|+.++|+..|++.++.+++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 466778899999999999998875443443 34456788899999999999999999876443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.088 Score=42.82 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=28.1
Q ss_pred HHHhcCChHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 623 LYCRYGYMKELEDFVNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
...+.|++++|++.|+.+.. +-....--.++.+|.+.|++++|...+++.++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34445555555555554431 01112233355555555555555555555555555555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.018 Score=33.81 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..|..++..+...|++++|...++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778899999999999999999999999964
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.55 Score=46.50 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
..+|.++.++..+ +.| |......+..+..-.++++.|...|++.. .+.|| ...|........-+|+.++|.+.
T Consensus 320 ~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 320 AQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455556666666 334 44555555555566666777777777665 34444 34455555556666777777777
Q ss_pred HHhC-CCCCC---HHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 637 VNRM-PFNPT---VPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 637 ~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+++. .-.|. .......++.|+..+ .+.|+..|-+-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 7663 22222 234444455555543 55566555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.3 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=12.0
Q ss_pred CCccHHHHHHHHHhhcCCCC
Q 043637 660 GYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p~~ 679 (693)
+|.-.+..++++..+++|..
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 45555666666666666643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.8 Score=40.73 Aligned_cols=66 Identities=9% Similarity=-0.146 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP---DHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-++.....|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445578888999999999999999999888743222 233444455677778888999998888875
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.18 Score=42.48 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-----hCCCcchhHHH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-----NCYEINVVCRG 516 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 516 (693)
...++..+...|++++|.++.+.+....+-+...+..++.++...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 344556667778888888888888777777788888888888888888888888777654 57777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.1 Score=40.10 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=87.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh---CCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN---CYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
.|+..+|-..++++....+.|...+...-.+|...|+.+.-...++++... +++....+-..+.-++..+|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 455666666666666555666666666666677777766666666665542 22222233334444556677777777
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 533 RVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 533 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+.-++.. +.|...-.+....+...|++.++.+...+-...=-..+ ...|....-.+...+.++.|+++|++=+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 7777666 34444555666666777777777776655333100001 1234444445566677788887777644
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.28 Score=44.62 Aligned_cols=105 Identities=13% Similarity=0.010 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----C-CCCHHhHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP----F-NPTVPMLRKI 652 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l 652 (693)
..|+.-+. +.+.|++..|.+.|.....++.-.+ .+..+..|...+...|++++|...|..+. . +.-+..+..+
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 35666554 4567889999999999986322111 23446679999999999999999988774 2 2234467778
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.......|+.++|...++.+.+..|..+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888999999999999999999998776543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.47 Score=44.67 Aligned_cols=127 Identities=14% Similarity=-0.023 Sum_probs=64.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC---CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCCChhHHH-
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEG---IKP--DHITFHGILLACIHEGNVKLALQFFDSMRC---KYGIIPQLEHYE- 618 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~- 618 (693)
++..+....+.++++++.|+....-- -.| ....+..|...|.+..|+++|.-+..++.+ ..++.....-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555556666666666554411 111 123456666666666666666655544432 122222222222
Q ss_pred ----HHHHHHHhcCChHHHHHHHHhCC----CCCCHH----hHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 619 ----CMIKLYCRYGYMKELEDFVNRMP----FNPTVP----MLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 619 ----~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.+.-+|-..|+.-.|.+..++.. ..+|.+ ....+.+.|+..||.+.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23344555666665655555432 233333 344566666777777777666666544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.9 Score=38.47 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC--CCH-HHHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----ChHHHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESSS--LDV-IICNSMIL-GFCHNERGREALEVFGLMKKEGIKP----DHITFHGILL 586 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 586 (693)
+......+...+....+...+..... ++. ........ .+...|+++.|...+++... ..| ....+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhh
Confidence 33334444444445555555544331 111 12222222 67777888888888887755 333 2233444444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-HHhHHHHHHHHHhcCCcc
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMPF-NPT-VPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~ 663 (693)
.+...++++.+...+..... .... ....+..+...+...|+.++|...+..... .++ ...+......+...|..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 46677788888888888764 3333 356677777778888888888888777652 232 334444555555666788
Q ss_pred HHHHHHHHHhhcCCC
Q 043637 664 LGEWAARRLNELNPW 678 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~ 678 (693)
.+...+++..+..|.
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 EALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhCcc
Confidence 888888888888775
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.4 Score=45.29 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=79.1
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHH-hCCCcch-----hHHHHHHHHHH----hhCCHHHHHHHHhcCC--CCCHHHHHH
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIR-NCYEINV-----VCRGALVEVYT----KCCCLEYAIRVFKESS--SLDVIICNS 548 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-----~~~~~l~~~~~----~~~~~~~A~~~~~~~~--~~~~~~~~~ 548 (693)
..++....-.||-+.+.+.+.+..+ .++.-.. -.|...+..+. .....+.|.++++.+. -|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3444445555666666666665544 2222111 11112221111 2345566666666665 355544443
Q ss_pred H-HHHHHhCCChHHHHHHHHHHHHCC--CC-CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HH
Q 043637 549 M-ILGFCHNERGREALEVFGLMKKEG--IK-PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-KL 623 (693)
Q Consensus 549 l-~~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~ 623 (693)
. .+.+...|+.++|++.|++..... .+ .....+.-+...+....+|++|.+.|..+.+. -.-+..+|..+. -+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3 344556677777777777654311 11 12344555566667777777777777777642 222233333332 23
Q ss_pred HHhcCCh-------HHHHHHHHhCC
Q 043637 624 YCRYGYM-------KELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~~-------~~A~~~~~~~~ 641 (693)
+...|+. ++|.++|.+.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4455666 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.7 Score=35.58 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=68.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
-.....+.|++++|.+.|+.+... .+.. ...-..++.+|.+.|++++|...+++.++-+.-.|+.. |-....+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHH
Confidence 344456778888888888888774 2222 34566677888888888888888888886444444433 444444444
Q ss_pred hcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 626 RYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.-...+..+.-+- ....|+ +....|...++.+++..|+++
T Consensus 94 ~~~~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 3332222221111 111111 123478888888888888654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.8 Score=36.36 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...|+-+.-.+++.++... -.|++.....+..+|.+.|+..++.+++.++.+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344555555555555555555432 245555555555666666666666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.35 Score=46.54 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=88.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC------------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-Ch
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS------------------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DH 578 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 578 (693)
-...|.+.|++..|...|+++. ..-..+++.+..++.+.+++..|++...+.++. .| |.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCch
Confidence 3567888999999988887643 122347888999999999999999999999994 45 56
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHH-HHHHHHhCC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKE-LEDFVNRMP 641 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 641 (693)
.....=..+|...|+++.|...|+++.+ +.|+. ..-..|+.+-.+....++ ..++|..|-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777778999999999999999999984 45654 444555555555544443 356666663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.76 E-value=1 Score=37.57 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=18.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH 590 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 590 (693)
++..+...+.......+++.+...| ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3334444444445555555544443 1233344444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.4 Score=44.70 Aligned_cols=133 Identities=15% Similarity=0.047 Sum_probs=86.7
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNER 558 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (693)
....++.-+.+.|-.+.|.++...- ..-.+...+.|+++.|.++.++.. +...|..|.......|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 3455555556666666665543321 123445667788888888876654 56689999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
++-|++.|.+..+ |..|+-.|...|+.+.-.++.+....+ |. ++....++.-.|+.++..++|.
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988887554 566666777778877777777666542 21 4555566677788888888887
Q ss_pred hCC
Q 043637 639 RMP 641 (693)
Q Consensus 639 ~~~ 641 (693)
+..
T Consensus 427 ~~~ 429 (443)
T PF04053_consen 427 ETG 429 (443)
T ss_dssp HTT
T ss_pred HcC
Confidence 765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.1 Score=40.50 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=112.0
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITF 581 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 581 (693)
|-...|+..+ .-.+.|++++|.+.|+.+. +....+--.++.++.+.++++.|+..+++... ..|+. .-|
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 3344444433 3456799999999999877 22344666778889999999999999999988 44532 334
Q ss_pred HHHHHHHhc-------cCcH---HHHHHHHHHhHHhcCCC---CChhH------------HHHHHHHHHhcCChHHHHHH
Q 043637 582 HGILLACIH-------EGNV---KLALQFFDSMRCKYGII---PQLEH------------YECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 582 ~~l~~~~~~-------~g~~---~~A~~~~~~~~~~~~~~---p~~~~------------~~~l~~~~~~~g~~~~A~~~ 636 (693)
...|.+++. ..|. ..|..-|+++..++.-. ||... =-.+.+.|.+.|.+.-|..-
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 444443332 2233 34555555555543222 22211 11346778999999999988
Q ss_pred HHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 637 VNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 637 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+++|.. .-..+.+..+..+|..-|-.++|....+-+....|+++
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 888852 22334677788999999999999998887777777665
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.0087 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred HHHHhhcCCCCCcchhhhhhccc
Q 043637 669 ARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 669 ~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++++++++|+++.++..||++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~ 24 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL 24 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH
Confidence 78999999999999999999986
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.1 Score=42.60 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 528 LEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 528 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
..+|.++-++.. +.|......+..+....++++.|...|++... +.||. .+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455554443 56777777788877888889999999999888 78875 6677777777888999999999988
Q ss_pred hHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 043637 604 MRCKYGIIPQ---LEHYECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 604 ~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
..+ ..|. ..+....++.|+..+ .++|+.++-
T Consensus 398 alr---LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 398 SLQ---LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred Hhc---cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 653 3443 333344444555544 556666553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.7 Score=36.13 Aligned_cols=67 Identities=7% Similarity=0.123 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043637 578 HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY-GYMKELEDFVNRMPFNPTVPMLRKIFDKC 656 (693)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 656 (693)
.......++.|.+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+. .++..|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34444566777777777777777765532 33344444444 6777777777663 2555666666555
Q ss_pred H
Q 043637 657 R 657 (693)
Q Consensus 657 ~ 657 (693)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 4
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.29 Score=44.27 Aligned_cols=99 Identities=7% Similarity=-0.030 Sum_probs=75.4
Q ss_pred HHHHhccC--CCCcccHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCC------------
Q 043637 198 RRMFDDIQ--NKNAVSWNVIVRRYLVA-----GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLS------------ 258 (693)
Q Consensus 198 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 258 (693)
.+.|.... ++|-.+|-..+..+... +..+=....++.|++-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34555555 46666777777666543 455666677888999999999999999998876543
Q ss_pred ----CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 259 ----SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 259 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+-.-+..++++|..+|+.||..+-..|++++++.+..-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 23457889999999999999999999999998887643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=8.6 Score=41.13 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
.-++..+....+.+.+..+.+...+.++..|..++..+.+.+.++.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34666777888888888888888877888999999988888865554444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.4 Score=42.60 Aligned_cols=112 Identities=18% Similarity=0.083 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHH-HHHHHHHhhCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCChHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVVCRG-ALVEVYTKCCCLEYAIRVFKESS-------SLDVIICNSMILGFCHNERGREA 562 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 562 (693)
.+.+.+.+++..+.+.-+ +...|. .-...+...|++++|.+.|++.. +.....+.-+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 455666666666665432 333332 22344556677777777777544 22333556677778888999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHH-HHHhccCcH-------HHHHHHHHHhH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGIL-LACIHEGNV-------KLALQFFDSMR 605 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~ 605 (693)
.+.|.++.+.. .-+..+|..+. .++...|+. ++|.+++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999852 33455566555 444566777 88888888774
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=4.1 Score=36.50 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC--------CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCC-ChHHHHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS--------SLDV-IICNSMILGFCHNERGREALEVFGLMKKEG--IKP-DHITFHG 583 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~~~~~ 583 (693)
.....++.+..++++|-..+.+-. -++. ..|-..|-.+....++..|.+.++.-.+-+ ..| +..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334444555555555544443322 1111 134445555666667777777777744422 222 3466667
Q ss_pred HHHHHhccCcHHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQFF 601 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~ 601 (693)
|+.+| ..|+.+++.+++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 77666 456666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.93 Score=35.88 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHh
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE--HYECMIKLYCR 626 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~ 626 (693)
..++...|+.+.|++.|.+.+. +-| +...||.-..++.-+|+.++|++=+++..+-.|-+-... .|..-.-.|-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456677888888888888887 555 567888888888888888888888888876444332221 23333344666
Q ss_pred cCChHHHHHHHHhC
Q 043637 627 YGYMKELEDFVNRM 640 (693)
Q Consensus 627 ~g~~~~A~~~~~~~ 640 (693)
.|+.+.|..-|+..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 78888888777655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.73 Score=37.21 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRGALVEV 521 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 521 (693)
.|+..++.+++.+++..+++..|.++.+.+.+ .+++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67777788888888777888888887777766 4566566666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.5 Score=33.72 Aligned_cols=137 Identities=7% Similarity=0.047 Sum_probs=75.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhH---HHHHHHHHHHcCChH
Q 043637 352 TRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFV---SNALLDMYRKCGNLR 428 (693)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 428 (693)
.-.|..++..++..+..... +..-++.++--....-+-+-..+.+ ..-|--.|... ....+.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL---DSIGKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH---HHHhhhcCchhhcchHHHHHHHHHhcchH
Confidence 34566667777766665432 2333444443322222223233333 22232222222 234555666655533
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 043637 429 SARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY 508 (693)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 508 (693)
+- ...-+..+.++|+-+.-.+++..+...+.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 87 e~---------------vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EY---------------VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HH---------------HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HH---------------HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 32 334466778889988888999888776688889999999999999999999999999888886
Q ss_pred C
Q 043637 509 E 509 (693)
Q Consensus 509 ~ 509 (693)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.4 Score=43.01 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=79.5
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
-...++.-+.+.|-.+.|.++... . ..-.+...+.|+++.|.++.++.. +...|..|.+...+.|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 345555555555555555554322 1 122345678899999998888776 55588999999999999
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (693)
++-|.+.|.+..+ |..|+-.|...|+.++-.++.+.....|- ++....++...|+.++..
T Consensus 363 ~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 363 IELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 9999999988765 66777778888888777777666655442 344444444445544433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.2 Score=36.41 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=104.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH
Q 043637 452 GYARRGQSEEAMTSFSEMQWET---RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL 528 (693)
Q Consensus 452 ~~~~~~~~~~a~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (693)
.-.+.|++++|.+.|+.+.... +-...+...++.++.+.++++.|....++..+..+.....-|...+.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~---- 118 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY---- 118 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----
Confidence 4456788889999998887654 444567777778888899999999998888885443333334444444431
Q ss_pred HHHHHHHhcCC--CCCHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHhccCcHHHHH
Q 043637 529 EYAIRVFKESS--SLDVI-------ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH-GILLACIHEGNVKLAL 598 (693)
Q Consensus 529 ~~A~~~~~~~~--~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~ 598 (693)
|..+. ..|.. .+..++.-|-...=...|......+.. -..-+. .+.+-|.+.|.+..|.
T Consensus 119 ------~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d-----~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 119 ------FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND-----ALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ------hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcChHHHH
Confidence 11111 11111 111122222111112222222222111 011122 2347889999999999
Q ss_pred HHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 599 QFFDSMRCKYGIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
.-++.|.+. .+-+. +.+-.+..+|.+.|-.++|...-.-+. ..|+.+
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999999974 33333 345566788999999999988777665 345544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.4 Score=37.61 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
|...-..+...+...|+.+.|.+.+-.+..+-.---|...-..|+..+.--|.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33444445555666666666555544443321222233334455555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.8 Score=40.96 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=74.9
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhC-----CCcchhHHHHHHHHHHhhCCHHHHHHHHhcC-------CCCCHH---
Q 043637 480 FETLLAACANISSLEQGKQIHCFVIRNC-----YEINVVCRGALVEVYTKCCCLEYAIRVFKES-------SSLDVI--- 544 (693)
Q Consensus 480 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~--- 544 (693)
..++..++...+.++++.+.|+...+.- .-....++..|...|.+..+.++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345556666666777777666655511 1123445666677777777766665444332 212222
Q ss_pred ---HHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ---ICNSMILGFCHNERGREALEVFGLMKK----EGIKPD-HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ---~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
....|..++...|...+|.+.-++..+ .|-.|- ......+.+.|...|+.|.|..-++.+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233456677788888888777776544 343332 2445566688888888888887777654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.34 Score=38.17 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=69.9
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHH---hHHHHHHHHHhc
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF---NPTVP---MLRKIFDKCRKN 659 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~~l~~~~~~~ 659 (693)
-+....|+.+.|++.|.+... -.+-.+..|+.-..++--.|+.++|++-+++... ..... .+-.-.-.|+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 477889999999999999985 4556778899999999999999999999987741 11222 233344567889
Q ss_pred CCccHHHHHHHHHhhcCC
Q 043637 660 GYATLGEWAARRLNELNP 677 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p 677 (693)
|+-+.|+.-|+.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999998888776554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.3 Score=35.61 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhcCC
Q 043637 552 GFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-KLYCRYGY 629 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~ 629 (693)
.-.+.++.+++..++..+.- ++|.......+- ..+...|+|.+|..+|+++.++ .|....-..|. .++...|+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCC
Confidence 34566788888888888888 778765444443 6777888888888888888643 23333333333 33334444
Q ss_pred hH---HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHH
Q 043637 630 MK---ELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 630 ~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
.+ .|.++++.- ..+.-..++..+....+...|...
T Consensus 94 ~~Wr~~A~evle~~----~d~~a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 94 PSWRRYADEVLESG----ADPDARALVRALLARADLEPAHEA 131 (160)
T ss_pred hHHHHHHHHHHhcC----CChHHHHHHHHHHHhccccchhhh
Confidence 43 233333222 223333456666665555555553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.49 E-value=11 Score=40.27 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
+.+.|++++|...|-+-...-.|+ .++.-+........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 344555555555544432222221 1222333333344444455555555554 4444455556666666555555
Q ss_pred HHHhcCC
Q 043637 533 RVFKESS 539 (693)
Q Consensus 533 ~~~~~~~ 539 (693)
++.+...
T Consensus 452 efI~~~~ 458 (933)
T KOG2114|consen 452 EFISKCD 458 (933)
T ss_pred HHHhcCC
Confidence 5555444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.1 Score=30.48 Aligned_cols=31 Identities=16% Similarity=-0.072 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667788888999999999999999999884
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.31 E-value=8.5 Score=42.94 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=52.9
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI--TFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
..+.+++|.-.|+..-+. ..-+.+|...|+|.+|+.+..++.. .-|.. +-..|..-+..+++.-+|-+++
T Consensus 951 ~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il 1022 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKIL 1022 (1265)
T ss_pred HhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 344455555444433321 1134455555555555555554433 11221 1244556666677777777766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+...+ ....+..|++...+++|..+-....
T Consensus 1023 ~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1023 LEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 655432 2344566777777777777666554
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.25 E-value=9.1 Score=37.64 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=102.1
Q ss_pred hCCHHHHHHHHhcCC----CCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHhccCcHH
Q 043637 525 CCCLEYAIRVFKESS----SLDVIICNSMILGF-CHNERGREALEVFGLMKKEGIKPDHI----TFHGILLACIHEGNVK 595 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~ 595 (693)
.|+.++|.+.+..+. ++....|-.|+.+- ....+...|+++|+...= .-|-.. ....-+-...+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 477777777777666 34445566666554 344568888888888766 456433 2333344567778888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYEC-MIKLYCR---YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARR 671 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 671 (693)
++..+-..-..++...|-...|.. +...+.+ .-..+.-..++..|....-...|-.+...-...|+.+.|.-+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877777666665666665444332 3333333 334445556666665333445777777777788888888888888
Q ss_pred HhhcCCCCCcchhhhhhcc
Q 043637 672 LNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 672 ~~~~~p~~~~~~~~l~~~y 690 (693)
++.+-+ ........+.+|
T Consensus 283 A~~L~~-~~~~~~~ra~LY 300 (421)
T PRK12798 283 ALKLAD-PDSADAARARLY 300 (421)
T ss_pred HHHhcc-CCCcchHHHHHH
Confidence 888874 345555556655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.17 Score=47.03 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.-|.+.|.+++|+..+..... +.| |.+++..-..+|.+.+.+..|..=.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 344455555555555554444 344 444444444455555544444443333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.2 Score=35.43 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHCCCCC--C---hHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCCCh-hHHHHHHHHHHh
Q 043637 556 NERGREALEVFGLMKKEGIKP--D---HITFHGILLACIHEGNVKLALQFFDSMRC---KYGIIPQL-EHYECMIKLYCR 626 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~-~~~~~l~~~~~~ 626 (693)
..++++|++++++...-=..- + ...+....+.+.+..++++|-..+.+-.. +..--++. ..|-..|-.|.-
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 345666776666654410001 1 12344444677777777776666554321 01111221 224455556667
Q ss_pred cCChHHHHHHHHhC---CC---CCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 627 YGYMKELEDFVNRM---PF---NPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 627 ~g~~~~A~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
..++..|...++.. +. ..+..+...|+.+|-. ||.+++..++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHHHc
Confidence 77888888888873 21 2234456666666544 56666655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=8.3 Score=36.57 Aligned_cols=45 Identities=4% Similarity=0.005 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (693)
+....+..+...|..+-. ..+......++...-...+.++.+.|+
T Consensus 39 vR~~A~~aL~~~~~~~~~-~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVF-RLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHHHHhcCcchHH-HHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 333344444444432222 333334444444444444445555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=15 Score=39.07 Aligned_cols=100 Identities=10% Similarity=0.130 Sum_probs=66.5
Q ss_pred HHHHHHcCChhHHHhhhcCCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHH
Q 043637 286 TEMYVKCGRLEDARGLLDQPDER-----NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 286 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 360 (693)
++-+.+.+.+++|+++.+..... -...+...|+.+...|++++|-...-.|...+..-|.-.+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45567778888888887765542 2246777888888889999998888888777777777777666666665443
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 043637 361 LDFVFLMRKTTKDIDQVTLGLILNVCAG 388 (693)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 388 (693)
..++ .....+.+...|..++..+..
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH
Confidence 3322 222223455667777766655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=5.3 Score=33.70 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHHHh
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-----KLYCR 626 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~ 626 (693)
+...+..++|+.-|..+.+.|...=+ ..-........+.|+-..|...|+++-.+ .|.+.....+. ..+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 35667788888888888886643211 11222234556778888888888888643 33333332222 33567
Q ss_pred cCChHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 627 YGYMKELEDFVNRMPFNPT---VPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 627 ~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.|.+++....++-+....+ ...-..|..+-.+.|++..|...|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888888777753332 23455677777788888888888888776
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.2 Score=41.38 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHYE 618 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 618 (693)
.++..++..+...|+++.+.+.++++.+ ..| +...|..++.+|.+.|+...|+..++.+.. +.|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566778888888888888888888888 566 678888888899999988888888887754 457788777666
Q ss_pred HHHHH
Q 043637 619 CMIKL 623 (693)
Q Consensus 619 ~l~~~ 623 (693)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.26 Score=30.98 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=13.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+..+..+|.+.|++++|.++++++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.66 E-value=3 Score=34.93 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=62.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHh-cCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-ECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRK-NGY 661 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~ 661 (693)
+..-.+.++.+++..++..+. -++|...-. ..-...+++.|++.+|+.+|+++. ..|..+....++..|.. .||
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 345567789999999999986 456664433 334567889999999999999986 35556666666666654 344
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhh
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
.+. ....+.+++-.| |+.+-..
T Consensus 94 ~~W-r~~A~evle~~~-d~~a~~L 115 (160)
T PF09613_consen 94 PSW-RRYADEVLESGA-DPDARAL 115 (160)
T ss_pred hHH-HHHHHHHHhcCC-ChHHHHH
Confidence 333 333444555554 4444333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=13 Score=37.33 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMI 550 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 550 (693)
..+.....+++..+...-+..-.+.+..+|...|- +...+-.++++|... ..++-..+++++. -.|++.-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 66777888888888888888888888888887553 566677788888777 5566666666444 34444444455
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC---h---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD---H---ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.-|-+ ++.+.+...|.++... +-|. . ..|.-+... -..+.|..+.+..++..+.|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555 7778888888887775 3331 1 234444321 24567788888888877766666666677777778
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 625 CRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
....++++|++++..+. .+.+...-..++..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 88888888888888775 34455566666666653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.31 E-value=18 Score=38.52 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-cCChHHHHHHHHHHHHhCCC
Q 043637 443 KVSWNAVLTGYARRG-----QSEEAMTSFSEMQWETRPSKFTFETLLAACAN-ISSLEQGKQIHCFVIRNCYE 509 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~ 509 (693)
......+...|.+.. +.+.|+.++.+....+.|+...+...+..... ..+...|.++|......|..
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~ 360 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI 360 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh
Confidence 334445555555532 55678888888888887777766665555444 35677888888888877754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.19 Score=29.93 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 649 LRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 649 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+..++..|...|++++|++.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556777888888888888888885544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.09 E-value=16 Score=37.62 Aligned_cols=185 Identities=7% Similarity=-0.068 Sum_probs=98.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
+..+|...+.-....|+.+.+.-.|++..-....-...|--.++-....|+.+.+..++....+.-.+-.+.+--.-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 44567777777778888888887777764332111222222333333347777777776666553332222221111112
Q ss_pred HHhhCCHHHHHHHHhcCC--CCCHH-HHHHHHHHHHhCCChHHHH---HHHHHHHHCCCCCCh--HHHHHHH-HHHhccC
Q 043637 522 YTKCCCLEYAIRVFKESS--SLDVI-ICNSMILGFCHNERGREAL---EVFGLMKKEGIKPDH--ITFHGIL-LACIHEG 592 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~~~~~l~-~~~~~~g 592 (693)
....|+++.|..+++.+. -|+.. .-..-+....+.|+.+.+. +++....+....+.. ..+.-.. --+.-.+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 233467888888877665 23322 2222344556667777666 333333332122211 1111111 2334457
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 628 (693)
+.+.|..++.++.+ -++++...|..+++...-.+
T Consensus 456 d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 77888888888874 66677777777777665544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.48 E-value=19 Score=37.16 Aligned_cols=179 Identities=9% Similarity=-0.044 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHH
Q 043637 476 SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILG 552 (693)
Q Consensus 476 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 552 (693)
+..+|...+.--...|+.+.+.-.+++..-..-. -...|-..+.-....|+.+-|..++.... .++......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666677777776666665542111 11222223333334466666666555443 2222222222222
Q ss_pred H-HhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHH---HHHHHhHHhcCCCCChhHHHHHH----HH
Q 043637 553 F-CHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLAL---QFFDSMRCKYGIIPQLEHYECMI----KL 623 (693)
Q Consensus 553 ~-~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~l~----~~ 623 (693)
+ -..|++..|..+++.+.+. + |+. ..-..-+....+.|..+.+. +++..... ..-+..+...+. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~---~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE---GKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc---cccCcchhHHHHHHHHHH
Confidence 2 2345677777777776664 3 543 22222334455566666655 33332221 112222222222 21
Q ss_pred -HHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 624 -YCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 624 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+.-.++.+.|..++.++. .+++.+.|..++..+..++
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222566667777766664 3455666666666666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.8 Score=33.36 Aligned_cols=135 Identities=11% Similarity=0.051 Sum_probs=79.0
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC
Q 043637 128 LELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK 207 (693)
Q Consensus 128 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 207 (693)
.+.+..+.+.+++|+...+..++..+.+.|++....+ +...++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4566667778889999999999999998887655444 4445555555444433322222 223333332233322
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 208 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
=...+..++..+...|++-+|+++.+..... +......++.+....+|...-..++....+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234667778888899999999888775322 122234455666555555554444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.7 Score=37.38 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=55.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDH-----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKL 623 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 623 (693)
..-+.+.|++++|.+-|.+.++. ++|.. ..|..-..+..+.+.++.|+.-..+.++ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34577888888888888888884 33322 2233334566777888888887777663 2332 1222233456
Q ss_pred HHhcCChHHHHHHHHhCC
Q 043637 624 YCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~ 641 (693)
|.+..++++|+.-++++.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 777788888887777775
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.05 E-value=14 Score=35.04 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=10.0
Q ss_pred hCCCHHHHHHHHHHHHH
Q 043637 353 RSLLWKEALDFVFLMRK 369 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~ 369 (693)
+.|+.+.|...+.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45666666666665544
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.88 E-value=15 Score=34.82 Aligned_cols=144 Identities=8% Similarity=-0.164 Sum_probs=78.9
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHhccCcHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI----LLACIHEGNVKLA 597 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----~~~~~~~g~~~~A 597 (693)
.|++.+|-..++++. +.|...++..=.++.-.|+.+.-...++++... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 355555555555554 456666666666666777766666666666653 34554333322 2344566777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCCccHHHHHHHH
Q 043637 598 LQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVP------MLRKIFDKCRKNGYATLGEWAARR 671 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 671 (693)
.+.-++..+ -.+.|...-..+...+.-.|+..++.++..+-...-+.. .|=+..-.+...+.++.|.++|.+
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777666653 223344445556666666777777777766554211110 111223334455677777776654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1 Score=37.42 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHH
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREA 329 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (693)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566667777777778888887766667788888889999998888888888884433 2223445555555555555
Q ss_pred HHHHhhCC
Q 043637 330 RELFNEMP 337 (693)
Q Consensus 330 ~~~~~~~~ 337 (693)
.-++..+.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.75 E-value=14 Score=34.44 Aligned_cols=58 Identities=10% Similarity=-0.062 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
|...-..+...|...|+.++|.+.+-.+. ...+...-..++..+..-|..+.+...++
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555667777777777777776665443 22344455566666666664444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.65 E-value=9.8 Score=32.42 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (693)
+..++..+...|++-+|+++.+.... .+......++.+..+.++...-..+++...+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555556666666665554321 1112223445555555555544444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.64 E-value=11 Score=32.80 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=61.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH-----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFH-----GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
+...+...|++++|+.-++..... |....+. .|.+.....|.+|+|+.+++...++ +. .......-.++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w--~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cH--HHHHHHHhhhH
Confidence 456677888899998888877762 3222333 3446778889999999998877542 22 22233445678
Q ss_pred HHhcCChHHHHHHHHhCCCC
Q 043637 624 YCRYGYMKELEDFVNRMPFN 643 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~ 643 (693)
+...|+.++|+.-+++....
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 169 LLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHcCchHHHHHHHHHHHHc
Confidence 88999999999988877633
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.43 E-value=3.9 Score=35.57 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH--H
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYE--C 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~--~ 619 (693)
.+..+..-|++.|+.+.|++.+.++.+....|.. ..+..+++.+...+++..+...+.++..- ...+. ...-+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHHH
Confidence 5667788888999999999999998886555543 45677788888889999998888888652 22222 11111 1
Q ss_pred HH--HHHHhcCChHHHHHHHHhCC
Q 043637 620 MI--KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~--~~~~~~g~~~~A~~~~~~~~ 641 (693)
.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22446789999888887765
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.33 E-value=36 Score=38.41 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHH
Q 043637 287 EMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFL 366 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (693)
+.--+.|-+++|+.++.--.+.-...|....+-+.....+++|.-.|+..-+ ...-+.+|...|+|.+|+.+-.+
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHh
Confidence 3334445555555555444433334455555555556666666555544322 12234455556666666666554
Q ss_pred H
Q 043637 367 M 367 (693)
Q Consensus 367 m 367 (693)
+
T Consensus 991 l 991 (1265)
T KOG1920|consen 991 L 991 (1265)
T ss_pred h
Confidence 4
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.32 E-value=14 Score=35.21 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--cc----chhhHHHHHHHHHHhCC---CCchhHHHHHHHHHHHcCCh
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAG--LS----EIKMGKEVHGFIHRNDY---SSNIFVSNALLDMYRKCGNL 427 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 427 (693)
+++.+.+++.|.+.|.+-+..+|-+....... .. ....+..+++.|.+... .++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788888888888877776654333322 11 24456667777765431 1122222222211 11111
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCH-HHHHHHHHHhcccCC--hHHHHHHHHH
Q 043637 428 RSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSK-FTFETLLAACANISS--LEQGKQIHCF 502 (693)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~-~~~~~ll~~~~~~~~--~~~a~~~~~~ 502 (693)
+.- .+.+..+|+.+...| +-+. .....++..+..... ...+..+++.
T Consensus 156 e~l----------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 156 EEL----------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred HHH----------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 111 255667777777766 3333 444444444433333 3467788888
Q ss_pred HHHhCCCcchhHHHHHH
Q 043637 503 VIRNCYEINVVCRGALV 519 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~l~ 519 (693)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888887777766544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.14 E-value=15 Score=33.57 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH-H
Q 043637 412 FVSNALLDMYRKCGNLRSARIWFYQMSQ----RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA-A 486 (693)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~-~ 486 (693)
.........+...+.+..+...+..... ......+......+...+++.++.+.+.........+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 4445555556666666666555555542 2233344555555556666666666666665544111111112222 4
Q ss_pred hcccCChHHHHHHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~ 505 (693)
+...|+++.+...+.+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 140 LYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 5556666666666666533
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.32 Score=31.94 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
.+.-++.+.|++++|.+..+.+++.+|+|..+-.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667788999999999999999999988876544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.8 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|..+..++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555556666666666666666555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.73 E-value=59 Score=39.96 Aligned_cols=110 Identities=10% Similarity=-0.056 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--------HHh
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPT--------VPM 648 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--------~~~ 648 (693)
.+|....+.+...|.++.|...+-++.+ .- -+..+-..++.+...|+-..|+.++++.. ..|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e--~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE--SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh--cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 5677777777777777777777766654 22 23345556677777777777777776542 0111 111
Q ss_pred HHHH--------HHHH-HhcCC--ccHHHHHHHHHhhcCCCCCcchhhhhhcccC
Q 043637 649 LRKI--------FDKC-RKNGY--ATLGEWAARRLNELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 649 ~~~l--------~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 692 (693)
-+.. +.-| .+.|+ .+.-...|+.+.+..|+....++.||..|.+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 1111 1111 22333 3455677888888999888888888877764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.5 Score=27.18 Aligned_cols=29 Identities=17% Similarity=-0.063 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.++.++.+.|+.++|...++++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46677788889999999999999988853
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.98 Score=26.80 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
+.|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.06 E-value=5.1 Score=34.87 Aligned_cols=94 Identities=13% Similarity=-0.004 Sum_probs=49.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCH--hhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-h------hh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQ--ITYANVLRSSAEELELGVSKQLHGLIVKRGFCGN-V------IL 180 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~------~~ 180 (693)
.+..+..-|.+.|+.+.|++.|.++++....+.. ..+..+++.....+++..+.....+....--.+. . .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666666666666666666666655433332 3455666666666666666666555543322211 1 12
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
|..|. +...+++..|.+.|-...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 223467777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.03 E-value=22 Score=34.04 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--cCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK--CGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
++....+++.+.+.|+..+..++-+..-.... ..+++. ...++.++++.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~----------------------------~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE----------------------------IIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH----------------------------HHHHHHHHHHHH
Confidence 34556678888899888887666553322222 111111 136788999999
Q ss_pred hhCC----CCCHHHHHHHHHHhcccCC----hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC
Q 043637 470 QWET----RPSKFTFETLLAACANISS----LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL 541 (693)
Q Consensus 470 ~~~~----~p~~~~~~~ll~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 541 (693)
++.. .++..++..++.. ..++ .+.++.+++.+.+.|+..+-..
T Consensus 130 Kk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~L--------------------------- 180 (297)
T PF13170_consen 130 KKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDL--------------------------- 180 (297)
T ss_pred HHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHH---------------------------
Confidence 7765 6666777777544 2233 2445666666666665533221
Q ss_pred CHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 043637 542 DVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPDHITFHGIL 585 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 585 (693)
... +-+-++.... ...++.++++.+.+.|+++....|..+.
T Consensus 181 --Q~L-S~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 181 --QFL-SHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred --HHH-HHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 111 1111111111 1457888999999999988777666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.98 E-value=3.3 Score=38.58 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKK-----EGIKPDHITFHG 583 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 583 (693)
..++..++..+...|+.+.+...+++.. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3455667788888888888888888766 66778999999999999999999999988765 688888777766
Q ss_pred HHHH
Q 043637 584 ILLA 587 (693)
Q Consensus 584 l~~~ 587 (693)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.47 Score=27.74 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 043637 579 ITFHGILLACIHEGNVKLA 597 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A 597 (693)
..|..+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 4444444444444444444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.39 E-value=38 Score=36.03 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE 338 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (693)
|..+.++|....+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33445556666666666666666655
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.31 E-value=4.2 Score=30.75 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
+..+-+..+....+-|++......+++|.+.+++..|.++|+-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455666677777889999999999999999999999999998886544 33436766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.25 E-value=3.5 Score=30.79 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
++.+-++.+....+-|++....+.+++|.+.+++..|.++|+-++.+ +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45566667777778888888888889999999999999999888753 333445565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.97 E-value=33 Score=34.79 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSS--L---DVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+-..+..+..+.|+.++|.+.+.++.+ | ...+...|+.++...+.+.++..++.+-.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334445555555666666555555541 1 122444556666666666666666655443
|
The molecular function of this protein is uncertain. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.96 E-value=14 Score=30.54 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=37.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDHITFHGI-LLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...++.+++..+++.|.- +.|+..-...+ ...+...|+|++|..+|+++.+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 347788888888888887 67765433333 3567778888888888888875
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.3 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.071 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555566666666555555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.38 E-value=49 Score=36.18 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=27.8
Q ss_pred hhCCHHHHHHHHhcCC--------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESS--------SLDVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
..|++++|.++.+... ......+..+..+..-.|++++|..+..+..+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 3456666655554432 23445566666666667777777666655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=27 Score=33.15 Aligned_cols=117 Identities=11% Similarity=-0.050 Sum_probs=47.2
Q ss_pred chhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043637 177 NVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNG----KEAVVMFFKMLREDIRPLNFTFANALF 252 (693)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~ 252 (693)
|..+....+.++...|..+-...+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3344444444444444332222222222234444444455555555543 3455555555332 233333333344
Q ss_pred HhcCCCCcc--hhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCh
Q 043637 253 ACSFLSSPY--EGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRL 295 (693)
Q Consensus 253 ~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 295 (693)
++...+... ...+....+...-..++..+-...+.++++.|+.
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 433332111 0112222222222233445555555566555553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.25 E-value=33 Score=34.08 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVE 520 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 520 (693)
...|..++..-.+..-.+.|..+|-+..+.+ .++...+++++..++ .|+...|..+|+.-...-.+ +.......+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4456667777667677777777887777777 666667777776554 46667777777654443222 1222234455
Q ss_pred HHHhhCCHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS---SLD--VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
.+...++-+.|..+|+... ..+ ...|..+|.--..-|+...+..+=++|.+ +-|...+......-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 5566677777777777544 122 34677777777777777777777777776 556554444444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.85 E-value=34 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.+|..++..+.+.|.++.|...+.++.
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~ 173 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLF 173 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHh
Confidence 344444444444455444444444443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.70 E-value=49 Score=35.51 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=84.9
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCC---CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSA---NQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
|..+.+.+.+++|+++-+..... .| -.......+..+...|+++.|....-.|.. .+..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 56667777888887776655432 33 123455566666677777777766666542 2344444444445555
Q ss_pred CCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHH
Q 043637 192 MVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVI 270 (693)
Q Consensus 192 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 270 (693)
++......++-.-+. -+...|..++..+.. .+.. -|.+..+. ..++...-..++++- .. +.
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~--~~----------q~ 498 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT--EP----------QI 498 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc--ch----------HH
Confidence 444433332221111 234447766666655 2222 22222211 122222222222111 00 00
Q ss_pred HHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCc
Q 043637 271 IKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNI 310 (693)
Q Consensus 271 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 310 (693)
.+. .-+......|+..|...+++..|..++-...++++
T Consensus 499 ~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 499 KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 000 11122233488889999999999999888777644
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.47 E-value=19 Score=30.56 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 453 YARRGQSEEAMTSFSEMQWETR--PSKFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+.+.+..++|+.-|..+.+.|. -.......+.......|+...|...|+++-..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3556777888888888777661 11222222333445566666666666666553
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.05 E-value=30 Score=36.69 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 631 (693)
|...+..+.|.+.|++..+ +.|+..+-..+.-.+...|. ++...++- .+ | -.|-..+.|.|..+
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq-~I----g--------mkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQ-QI----G--------MKLNSLLGRKGALE 361 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHH-HH----H--------HHHHHHhhccchHH
Confidence 4445567788899998888 78876442222222222232 22222221 11 1 22445568899988
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 632 ELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 632 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+-..+|+-.- .+++-..++|+.+|.++.+.+.+++|.
T Consensus 362 klq~YWdV~~----------y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 362 KLQEYWDVAT----------YFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHhHHH----------hhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 8888875442 455666778999999999999999994
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.3 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+++.+...|...|++++|...++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.89 E-value=0.77 Score=38.42 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhh
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGR 126 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 126 (693)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....+++.|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888999988877667788889999999999888899888873332 334566677777777777
Q ss_pred HHHHHHHhh
Q 043637 127 TLELFLDMN 135 (693)
Q Consensus 127 a~~~~~~m~ 135 (693)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.78 E-value=19 Score=29.82 Aligned_cols=48 Identities=6% Similarity=-0.191 Sum_probs=22.7
Q ss_pred hCCHHHHHHHHhcCC--CCCHHHH-HHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 525 CCCLEYAIRVFKESS--SLDVIIC-NSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~--~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
.++++++..+++.+. .|+..-. ..-..-+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555443 3322211 11122344556666666666665553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.75 E-value=4.7 Score=30.53 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=30.6
Q ss_pred hHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 27 TKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
.+.+..+...+..|++....+.|++|.|-+++..|.++++.++..- .+....|..+++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3444455556666667777777777777777777777766665431 122225555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.2 Score=24.82 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+..+...+...|+++.|...++..++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455667777788888888888888887774
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.24 E-value=6.3 Score=39.03 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=81.1
Q ss_pred HHHHhCCChHHHH-HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 551 LGFCHNERGREAL-EVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 551 ~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
.-....|+...|- +++.-+....-.|+..... .......|+++.+.+.+..... -+-....+...+++...+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence 3344556766664 3444444433344443332 3455667889999888887753 444556667788888888999
Q ss_pred hHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 630 MKELEDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 630 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
+++|...-+-|.. -.++.....-.......|-++++.-.+++++.++|+..+.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 9999888777751 1223333333344455677888888999999888754433
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.12 E-value=57 Score=34.81 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=15.3
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQN 206 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 206 (693)
|..+.++|.-..+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.98 E-value=15 Score=34.46 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=72.7
Q ss_pred hCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC-CCc-----ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHh
Q 043637 71 FYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-RDG-----GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQI 144 (693)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 144 (693)
.|.+.++.+...++..-....+++++...+-++.. |+. .+-.+.++.+ -.-++++++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555566666666667888888888877653 211 1222333333 3446778888888888899999999
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhC
Q 043637 145 TYANVLRSSAEELELGVSKQLHGLIVKRG 173 (693)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 173 (693)
+++.+|..+.+.+++..|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888888777654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.87 E-value=48 Score=33.68 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=119.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
|....-+++..+..+....-+..+..+|..-| .+...|..++.+|... ..+.-..+|+++.+..++ +...-..|+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 55566778888888888888888888876654 4566788889998887 567778899999997776 55556667777
Q ss_pred HHhhCCHHHHHHHHhcCC------CCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhcc
Q 043637 522 YTKCCCLEYAIRVFKESS------SLDV---IICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGILLACIHE 591 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~ 591 (693)
|.+ ++.+.+..+|.++. +.+. ..|..+..- -..+.+..+.+..++... |..--...+..+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 766 88888888887654 1111 145544432 134566666666666553 2222345556666788888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.++++|++++..+.+ ....|...-..++.-+
T Consensus 219 eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 219 ENWTEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred cCHHHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 999999999998885 4455665555555544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.21 E-value=67 Score=34.85 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 557 ERGREALEVFGLMKKEG-IKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
.+.+.|..++....... +.+.. ..+..+.......+..++|...++.... ...+......-++.-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34566666666653322 22221 2233333333333223455555544321 122444445555555567777777
Q ss_pred HHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 634 EDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 634 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
...+..|.. .......--++.+....|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777766641 1111111124445455677777777776653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.76 E-value=10 Score=33.24 Aligned_cols=75 Identities=9% Similarity=-0.023 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCChHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKY--GIIPQLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
-+.|.+.|-++...+.--++.....|. .|....+.+++++++-++.+-. +-.+|+..+..|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 377888888887766444544444444 4445678888888888887521 33567888888888888888888874
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=83.62 E-value=39 Score=31.68 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHH----HHHHCCCCCCHHhHHHHHHHhcCCCCcc-hhH
Q 043637 190 KCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFF----KMLREDIRPLNFTFANALFACSFLSSPY-EGM 264 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 264 (693)
+.+++++|++++..- ...+.+.|+...|.++-. -+.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666654332 233445555544444333 3334556666655555554444332221 222
Q ss_pred HHHHHHHHh---c--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 043637 265 QIHGVIIKI---D--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER 339 (693)
Q Consensus 265 ~~~~~~~~~---g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (693)
.+.+.+.+. | ...+......+...|.+.|++.+|+..|--...++...+..++..+...|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 333333332 2 2346778888889999999999998887666555554444455444444443333
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKT 370 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 370 (693)
+...-. .+-.|...++...|...++...+.
T Consensus 141 dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111112 233456677788888777766554
|
; PDB: 3LKU_E 2WPV_G. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.6 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 043637 618 ECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~ 638 (693)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.48 E-value=18 Score=27.37 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHH
Q 043637 158 ELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLR 237 (693)
Q Consensus 158 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 237 (693)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-.|-. .+.|-...+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666655422 33333344566788999999999999998899998887765 456777777777777777
Q ss_pred CCCCCCHHhH
Q 043637 238 EDIRPLNFTF 247 (693)
Q Consensus 238 ~g~~p~~~~~ 247 (693)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.29 E-value=2.2 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666666555
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.29 E-value=6.7 Score=29.39 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHH
Q 043637 28 KTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLV 69 (693)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 69 (693)
+.+..+...+..|++....+.|++|.|.+++..|.++++.++
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.45 E-value=23 Score=33.28 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=75.1
Q ss_pred HhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC-CCc-----ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 171 KRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN-KNA-----VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 171 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
..|.+....+...++.......+++.++..+-.... |+. .+-.+.++. +..-++++++.++..=++-|+.||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 345555666667777777777888888877665542 221 122233343 3345678999999988999999999
Q ss_pred HhHHHHHHHhcCCCCcchhHHHHHHHHHhc
Q 043637 245 FTFANALFACSFLSSPYEGMQIHGVIIKID 274 (693)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (693)
++++.+|+.+.+.++..+|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.12 E-value=51 Score=31.32 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhhCCHH---HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 513 VCRGALVEVYTKCCCLE---YAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+...++.+|...+..+ +|..+++.+. +..+.++-.-+..+.+.++.+.+.+.+.+|... +.-....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 34455666666655544 3444444433 223444545566666678888888888888885 2212344444444
Q ss_pred HH---hccCcHHHHHHHHHHhHHhcCCCCChh-HHHH-HH-HHHH--hcC------ChHHHHHHHHhC----CCCCCHH-
Q 043637 587 AC---IHEGNVKLALQFFDSMRCKYGIIPQLE-HYEC-MI-KLYC--RYG------YMKELEDFVNRM----PFNPTVP- 647 (693)
Q Consensus 587 ~~---~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~-l~-~~~~--~~g------~~~~A~~~~~~~----~~~~~~~- 647 (693)
.+ ... ....|...++.+... .+.|... .... ++ +.+. +.+ +.+....+++.. ..+-+..
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33 333 334566666666542 5555543 2211 11 1121 111 133344444422 1222222
Q ss_pred --hHHHH----HHHHHhcCCccHHHHHHHHHh
Q 043637 648 --MLRKI----FDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 648 --~~~~l----~~~~~~~g~~~~A~~~~~~~~ 673 (693)
...++ +..+.+.++++.|..+|+..+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22223 344567889999999998654
|
It is also involved in sporulation []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=6.3 Score=36.88 Aligned_cols=64 Identities=8% Similarity=-0.165 Sum_probs=34.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+-.+|.+.++++.|+...+.+. .+.++.-++.-+..|.+.|-...|..-++..++..|++|.+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3344555555555555555553 233333455555555555666666666666666666555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 8e-10
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%)
Query: 470 QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLE 529
Q P + LL SL+ + + A + L
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 530 YAIRVF-------KESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582
A + ++ L + + N+++LG+ +E + V ++K G+ PD +++
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF 642
L + ++ + G+ Q ++ R +K +
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 643 NPTVP-------MLRKIFDKCRKNGYATLGEWAARRLNELNPW 678
P +P +LR ++ K + Y L
Sbjct: 265 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 7e-09
Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 13/210 (6%)
Query: 276 EGDDVVLGSLTEMYVKCGRLEDARGLLD-------QPDERNIISWTSIVSGYAISGRIRE 328
G L + + + +L A LL + + + +++ G+A G +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 329 ARELFNEMPER----NVISWNAMLAGYTRSLLWKEALDFVFL-MRKTTKDIDQVTLGLIL 383
+ + + +++S+ A L R ++ M + + + ++L
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 384 NVCAGLSEIKMGKEVH-GFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRD 442
+ + +K +V F + S L D+Y K G + ++ + +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
Query: 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWE 472
+ S E T S+
Sbjct: 304 FEKQLHMELASRVCVVSVEKPTLPSKEVKH 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 3e-08
Identities = 22/202 (10%), Positives = 59/202 (29%), Gaps = 10/202 (4%)
Query: 14 SKSSPKPTPSKTLTKTISGHLKSDEPVS--YSLYAHLFQLCASSKAIVEARKLESNLVTF 71
+ +P P S A L Q ++ +
Sbjct: 62 RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA 121
Query: 72 YPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER-------DGGSWNAMLGAYTQNGFP 124
+ L +C L A L + +NA++ + + G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 125 GRTLELFLDMNHSGVSANQITYANVLRSSA-EELELGVSKQLHGLIVKRGFCGNVILESS 183
+ + + +G++ + ++YA L+ ++ + G ++ + + G + +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 184 LVDAYGKCMVMTDARRMFDDIQ 205
L+ + V+ ++
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 5e-07
Identities = 92/630 (14%), Positives = 182/630 (28%), Gaps = 221/630 (35%)
Query: 17 SPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQ-LCASSKAIVEARKLESNLVTFYPTP 75
PK SK I + S + VS +L LF L + + +V+ + +E L Y
Sbjct: 41 MPKSILSKEEIDHI---IMSKDAVSGTLR--LFWTLLSKQEEMVQ-KFVEEVLRINYK-- 92
Query: 76 PVFLLNR-AIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDM 134
FL++ E ++ E +R +N ++F
Sbjct: 93 --FLMSPIKTEQRQPSMMTR----MYIEQRDR---LYN--------------DNQVFAKY 129
Query: 135 NHSGVSANQITYANVLRSSAEEL--ELGVSKQLHGLI----------------VKRGFCG 176
N VS Q LR + EL V + G++ V+
Sbjct: 130 N---VSRLQPY--LKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 177 NV-------------ILE-------------SSLVDAYGKCMVMTDA-----RRMF---- 201
+ +LE +S D + + RR+
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 202 --------DDIQNKNAV------------SWNVIVRRYLVAGNGKE-AVVMFFKMLREDI 240
++QN A + V +L A ++ L D
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD- 301
Query: 241 RPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLG-SLTEM--------YVK 291
+ L C P E + + + I + S+ + +V
Sbjct: 302 EVKSL-LLKYL-DCRPQDLPREVLTTNPRRLSI--------IAESIRDGLATWDNWKHVN 351
Query: 292 CGRLEDARGL-LDQ--PDERNIISWTSIVSGYAISGRIREARELFNEM---PERNV-ISW 344
C +L L+ P E R++F+ + P + I
Sbjct: 352 CDKLTTIIESSLNVLEPA---------------------EYRKMFDRLSVFPP-SAHIPT 389
Query: 345 NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404
+ SL+W + D+ ++N S ++ +
Sbjct: 390 ILL------SLIWFD---------VIKSDVMV-----VVNKLHKYSLVE----------K 419
Query: 405 NDYSSNIFVSNALLDMYRKCGNLRSAR---IWFYQMSQRRDKVSWNAVLT---------- 451
S I + + L++ K N + + Y + + D S + +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYSHI 477
Query: 452 GY-ARRGQSEEAMTSFSEM----QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506
G+ + + E MT F + ++ + + A+ + +++L+Q K ++ N
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 507 C--YE------INVVCRGALVEVYTKCCCL 528
YE ++ + + + +K L
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDL 567
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 7e-05
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 56 KAIVEARKLESNLVTFYP-TPPVFLLNRAIE 85
+A+ +KL+++L + + P + +E
Sbjct: 20 QAL---KKLQASLKLYADDSAPALAIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.22 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.43 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.03 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.92 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.9 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.89 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.83 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.83 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.7 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.65 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.65 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.24 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.23 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.84 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.69 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.4 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.29 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.18 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.91 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.94 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.83 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.59 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.25 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.0 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.9 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.73 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.32 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.85 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.95 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.92 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.72 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.3 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.13 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.2 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.54 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.04 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.96 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.24 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=360.04 Aligned_cols=495 Identities=8% Similarity=-0.067 Sum_probs=409.9
Q ss_pred hhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH
Q 043637 188 YGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267 (693)
Q Consensus 188 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 267 (693)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.++...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34566677777778887778888899999999999999999999999985 5678888899999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-------------------CchhHHHHHHHHHhcCCHHH
Q 043637 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-------------------NIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 268 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 328 (693)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 877543 678889999999999999999999999965443 36789999999999999999
Q ss_pred HHHHHhhCCC--CC-cccHHHHHHHHHhCCCHHHHH--HH-HHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHH
Q 043637 329 ARELFNEMPE--RN-VISWNAMLAGYTRSLLWKEAL--DF-VFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFI 402 (693)
Q Consensus 329 A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 402 (693)
|.+.|+++.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|..++..+.+.|++++|.++++.+
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999876 32 334444444443333222221 11 455555555556667777788899999999999999998
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 043637 403 HRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTF 480 (693)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~ 480 (693)
.+. +++..+++.++.+|.+.|++++|...+.++.. ..+..+|+.++.++.+.|++++|.++++++....+.+..++
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 766 58899999999999999999999999998875 34778899999999999999999999999986667789999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE 557 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 557 (693)
..++..|.+.|++++|.++|+++.+.... +..++..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 99999999999999999999999986543 67799999999999999999999999865 568889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCChH
Q 043637 558 RGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIPQ--LEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~ 631 (693)
++++|.++|+++.+. .| +..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999984 44 57899999999999999999999999998632 66787 789999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 632 ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 632 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+|+..++++. .+.+...|..++..|...|++++|...++++++++|+++.++..|+++|.
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999885 45678899999999999999999999999999999999999999999986
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=341.26 Aligned_cols=497 Identities=8% Similarity=-0.067 Sum_probs=318.1
Q ss_pred HHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 043637 86 CYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQL 165 (693)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 165 (693)
.+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..++..|...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345677888888888888888899999999999999999999999999985 467889999999999999999999999
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC-------------------CcccHHHHHHHHHhcCCch
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK-------------------NAVSWNVIVRRYLVAGNGK 226 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 226 (693)
++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 3678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HhHHHHHHHhcCCCCcchhH--HH-HHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhh
Q 043637 227 EAVVMFFKMLREDIRPLN-FTFANALFACSFLSSPYEGM--QI-HGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLL 302 (693)
Q Consensus 227 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 302 (693)
+|+++|++|.+.+ |+. ..+..+...+...+....+. .+ +..+...+..+...+|+.++..|.+.|+++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 289 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR------ 289 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH------
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH------
Confidence 9999999998753 433 34444444333332211111 01 222222233333334444444444444444
Q ss_pred cCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 043637 303 DQPDERNIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLG 380 (693)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (693)
+|.++|+.+.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..++.
T Consensus 290 -------------------------~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 343 (597)
T 2xpi_A 290 -------------------------RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYP 343 (597)
T ss_dssp -------------------------HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHH
T ss_pred -------------------------HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHH
Confidence 66666666655 5666677777777777777777777777765542 2455566
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCC
Q 043637 381 LILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 458 (693)
.++.++...|+.++|..+++.+.+.. +.+..++..++.+|.+.|++++|...+.++.. ..+..+|+.++..|.+.|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666666666665432 44566666677777777777777666666543 2345567777777777777
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+++|+++|+++....+.+..++..++.+|.+.|++++|.++|+++.+...
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------ 472 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ------------------------------ 472 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------------------
Confidence 77777777776665555566666666666666666666666666655432
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 539 SSLDVIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 539 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+. .+.
T Consensus 473 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 548 (597)
T 2xpi_A 473 --YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STN 548 (597)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSC
T ss_pred --CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 34455556666666666666666666666553 44565 456666666677777777777777666642 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
+..+|..++.+|.+.|++++|.+.++++. .+.+...+..+...
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 56666666667777777777776666664 23344444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=233.09 Aligned_cols=368 Identities=9% Similarity=0.001 Sum_probs=303.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CC-cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh
Q 043637 317 VSGYAISGRIREARELFNEMPE--RN-VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK 393 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 393 (693)
...+.+.|++++|.+.+..+.+ |+ ...+..+...+...|++++|...++...+.. +.+...+..+...+...|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3455566666677777766543 33 3455556667777888888888887776642 446667777778888888888
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 394 MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
+|...++.+.+.. +.+...+..+..++.+.|++++|...+.+.+. .| +...+..+...+...|++++|.+.|+++..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888877653 44556788888888888998888888887765 34 445677778888888999999999999887
Q ss_pred CCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHH
Q 043637 472 ETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNS 548 (693)
Q Consensus 472 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 548 (693)
..+.+..++..+...+...|++++|...++++.+.++. +...+..+...+...|++++|...+++.. +.+..++..
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 76777888999999999999999999999999886654 56778888899999999999999998765 556789999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
+...+...|++++|++.++++.+ ..|+ ..+|..+..++.+.|++++|...++++.+ ..+.+...+..++..+.+.
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999 5675 57899999999999999999999999986 3566788999999999999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|++++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++.++..++++|.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 99999999999886 35567789999999999999999999999999999999999999998874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=242.96 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=161.0
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCC---------hHHHHHHHHHHHHhCCCCchhh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELE---------LGVSKQLHGLIVKRGFCGNVIL 180 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 180 (693)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4777888888888888888888888888888888888888888876543 5778888888888888888888
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccC----CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQ----NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8888888888888888888888886 478888999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcC
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCG 293 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 293 (693)
.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999998887643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=238.24 Aligned_cols=213 Identities=12% Similarity=0.133 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh
Q 043637 359 EALDFVFLMRKTTKDIDQ-VTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM 437 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 437 (693)
.+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.+|.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344556666666665543 356777888888888888888888888888888888888888888777665443
Q ss_pred cCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHH
Q 043637 438 SQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRG 516 (693)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 516 (693)
.+.+..++|.++|++|...| .||..||+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P------ 138 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP------ 138 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC------
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------
Confidence 12344678899999999999 9999999999999999999999999999999888874
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL 596 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 596 (693)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++
T Consensus 139 -------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 139 -------------------------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 5555666667777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCR 626 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 626 (693)
|.+++++|.+ .+..|+..+|+.++..|+.
T Consensus 194 A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 194 VYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 8888888876 4888888888888777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=217.28 Aligned_cols=366 Identities=10% Similarity=0.018 Sum_probs=279.1
Q ss_pred HHHHcCChhHHHhhhcCCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDE--R-NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEAL 361 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 361 (693)
.+.+.|++++|...++++.+ | +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 34445555555555544322 2 223444445555555666666666655543 34567777888888888888888
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-
Q 043637 362 DFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ- 439 (693)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 439 (693)
..|+++.+. .|+ ...+..+..++...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+.+++.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888887764 343 4467777778888888888888888877654 33455667777888888899998888887765
Q ss_pred CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 043637 440 RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGAL 518 (693)
Q Consensus 440 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 518 (693)
.| +..+|..+...+...|++++|.+.|+++....+.+...+..+...+...|++++|...+++.....+. +..++..+
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 243 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNL 243 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHH
Confidence 23 56788888889999999999999999988777777888888889999999999999999988886543 56778888
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVK 595 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 595 (693)
..+|.+.|++++|...++++. +.+..+|..+...+.+.|++++|.+.++++.+. .+++..++..+...+...|+++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998865 456778999999999999999999999999984 2335688999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+|...++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..+...+...|
T Consensus 323 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999974 344567788999999999999999999998874 3445667777777766554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=216.53 Aligned_cols=261 Identities=7% Similarity=-0.099 Sum_probs=194.1
Q ss_pred cCChHHHHHHHHhhcC--------CC--------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQ--------RR--------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~--------~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~ 487 (693)
.|++++|...+.+.+. .| +..++..+...+...|++++|...|+++....+. ...+..+..++
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~ 280 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHH
Confidence 5666666666666554 11 2345666777777888888888888877665533 77777777788
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
...|++++|...++.+.+.... +...+..+..+|...|++++|...+++.. +.+...+..+...+...|++++|..
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887765433 45667777788888888888888887654 4556778888888888888888888
Q ss_pred HHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHH
Q 043637 565 VFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCR---YGYMKELEDF 636 (693)
Q Consensus 565 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~ 636 (693)
.++++.+ ..| +...+..+...+...|++++|...++++.+.....++ ...+..++..|.+ .|++++|...
T Consensus 360 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 8888887 345 4577778888888888888888888888753222232 3377888888888 8888888888
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
++++. .+.+...+..++..+...|++++|...++++++++|+++.....+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 88774 45566777888888888888889998899888888887777665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-18 Score=186.05 Aligned_cols=639 Identities=10% Similarity=0.061 Sum_probs=387.6
Q ss_pred HHHhhhcCCCCCCCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHH------------HhCCC-
Q 043637 8 ILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLV------------TFYPT- 74 (693)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------------~~~~~- 74 (693)
.+.++.+-+.+ |+.+++++.....++..| ++|..-=..+++.-..+|+.+....++.+-+ ..++.
T Consensus 397 ti~rfk~~~~~-pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~l 474 (1630)
T 1xi4_A 397 TIRRFQSVPAQ-PGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTL 474 (1630)
T ss_pred HHHHHHcCCCC-CCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHH
Confidence 34455555533 334445555555566665 6666555566666666666655544443221 00000
Q ss_pred -----CCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHH
Q 043637 75 -----PPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANV 149 (693)
Q Consensus 75 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 149 (693)
....+...++.++++.|+++++...-++.. ....|..|++.+.+. +++.|.++...+.+.. |.......+
T Consensus 475 Al~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~i 549 (1630)
T 1xi4_A 475 ALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQI 549 (1630)
T ss_pred HHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHH
Confidence 112223567777777788887777765432 245677888887755 5788888777776653 234457778
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhh-----------------------------HhHHHHHhhcCCCHHHHHHH
Q 043637 150 LRSSAEELELGVSKQLHGLIVKRGFCGNVIL-----------------------------ESSLVDAYGKCMVMTDARRM 200 (693)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-----------------------------~~~l~~~~~~~g~~~~A~~~ 200 (693)
+..+...+...++..++-+..+.+-+.+... +..+...|-+.|-++.|++.
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~ 629 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEH 629 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHh
Confidence 8888888888888888877777664322222 23344555566666666666
Q ss_pred HhccCC-------CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHh
Q 043637 201 FDDIQN-------KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKI 273 (693)
Q Consensus 201 ~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (693)
+..+.. .....-..++..+.+ =+.+.+++.+++|...+++-+......+..-+...=..+....+|+.-...
T Consensus 630 y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 630 FTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred cCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 654431 111122233333333 345666666666665544444332222222222222233344444443321
Q ss_pred -----------cCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC---------------CCc-----------------
Q 043637 274 -----------DFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---------------RNI----------------- 310 (693)
Q Consensus 274 -----------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~----------------- 310 (693)
....|..+....|.+.++.|++.+.+++.++-.- +|.
T Consensus 709 egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~ 788 (1630)
T 1xi4_A 709 EGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV 788 (1630)
T ss_pred hhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHH
Confidence 1345778888999999999999999888653210 000
Q ss_pred --------------------------------------------------------------------------------
Q 043637 311 -------------------------------------------------------------------------------- 310 (693)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (693)
T Consensus 789 ~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~ 868 (1630)
T 1xi4_A 789 LYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHE 868 (1630)
T ss_pred HHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence
Q ss_pred -----hhHHHHHHHHHhcCC-HHH------------------------H-------------------------------
Q 043637 311 -----ISWTSIVSGYAISGR-IRE------------------------A------------------------------- 329 (693)
Q Consensus 311 -----~~~~~li~~~~~~g~-~~~------------------------A------------------------------- 329 (693)
.++|+|++.|...++ .++ |
T Consensus 869 g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv 948 (1630)
T 1xi4_A 869 GCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLV 948 (1630)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHH
Confidence 013334333332221 111 0
Q ss_pred ----HHHHhhCCC---------------------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHhhHHHH
Q 043637 330 ----RELFNEMPE---------------------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTK--DIDQVTLGLI 382 (693)
Q Consensus 330 ----~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 382 (693)
.+++..... .++.--...+.+|...|.+.+|++++++..-.+- .-+...-+.+
T Consensus 949 ~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 949 RRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred HhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 111111100 1111223445667777888888888887763321 0111222223
Q ss_pred HHHH---------------------------hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 383 LNVC---------------------------AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 383 l~~~---------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
+.+. ...|.+++|..+|++.. ......+.+ +...+++++|.+...
T Consensus 1029 i~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Ae 1100 (1630)
T 1xi4_A 1029 ILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAE 1100 (1630)
T ss_pred HHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHH
Confidence 3222 22333334444433321 000001111 113444444433333
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
+. .+..+|..+..++.+.|++++|++.|.+. .+...|..++.+|.+.|++++|.+++...++... ++...
T Consensus 1101 rv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Id 1170 (1630)
T 1xi4_A 1101 RC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVE 1170 (1630)
T ss_pred hc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--ccccc
Confidence 22 34667888888888899999998888663 5667788888889999999999998888777553 33333
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVK 595 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 595 (693)
+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++
T Consensus 1171 t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 35888888888888655443 3456667777888888999999999888874 37888888888889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+|.+.+++.. +..+|..+..++...|++..|....... ..++..+..++..|...|.+++|+..+++.+.+
T Consensus 1239 ~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1239 AAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9988888663 4577888888888889988888877653 334556668899999999999999999999999
Q ss_pred CCCCCcchhhhhhcccCC
Q 043637 676 NPWAPFQFKITTNRFDRY 693 (693)
Q Consensus 676 ~p~~~~~~~~l~~~y~~~ 693 (693)
+|.+.+.+..|+.+|++|
T Consensus 1310 eraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred ChhHhHHHHHHHHHHHhC
Confidence 999999999999999987
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-21 Score=202.70 Aligned_cols=433 Identities=10% Similarity=-0.044 Sum_probs=247.2
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYG 189 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 189 (693)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|+++.|...++.+.+.+ +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34556667777777777777777777754 677777777777777788888887777777765 345567777777777
Q ss_pred cCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHH
Q 043637 190 KCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQI 266 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 266 (693)
+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------- 154 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK---------- 154 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh----------
Confidence 77777777777776642 23333444444444333333333333333322222222211110000000
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----
Q 043637 267 HGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAI---SGRIREARELFNEMPE---- 338 (693)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~---- 338 (693)
....|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 155 ------~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 155 ------QENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ------ccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 011111111111 11111111000 111112 22333333343443 6667777777665433
Q ss_pred -------------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 043637 339 -------------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN 405 (693)
Q Consensus 339 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (693)
.+...+..+...+...|++++|...|+++.+.... ...+..+...+...|+++.|...++.+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 12345666777788888888888888877765322 444444444444444444444444444332
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 406 DYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
. + .+..++..+...+...|++++|...+++.....+.+...+..+..
T Consensus 300 ~-~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 300 D-S--------------------------------NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp C-T--------------------------------TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred C-c--------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 1 1 234455556666666666666777776666555445566666777
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC------HHHHHHHHHHHHh-
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD------VIICNSMILGFCH- 555 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~------~~~~~~l~~~~~~- 555 (693)
.+...|++++|...++.+.+.... +...+..+...+...|++++|...++++. +.+ ...|..+...+..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 777777777777777777664332 45566667777777777777777776654 111 3377788888888
Q ss_pred --CCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 556 --NERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 556 --~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.|++++|.+.++++.+ ..|+ ..++..+..++...|++++|...++++.+
T Consensus 426 ~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888887 3453 56777788888888888888888888875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-21 Score=197.52 Aligned_cols=319 Identities=11% Similarity=-0.028 Sum_probs=226.5
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44567778888888888888888888887652 2345566666666666666666666666666553 334455555555
Q ss_pred HHHHcCChHHHHHHHHhhcCC-CC-h---hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 420 MYRKCGNLRSARIWFYQMSQR-RD-K---VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~-~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
+|.+.|++++|...+.+++.. |+ . ..+..++..+... .+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHcCCHH
Confidence 566666666665555555442 21 2 3333332221100 0112233455667777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|...++.+.+.... +...+..+..+|.+.|++++|...++++. +.+..+|..++..+...|++++|+..|+++.+
T Consensus 161 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776664432 55666677777777777777777777665 56677888899999999999999999999887
Q ss_pred CCCCCCh-HHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHH
Q 043637 572 EGIKPDH-ITFHGI------------LLACIHEGNVKLALQFFDSMRCKYGIIPQ-----LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 572 ~g~~p~~-~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A 633 (693)
+.|+. ..+..+ ...|...|++++|...++++.+. .|+ ...+..++.++.+.|++++|
T Consensus 240 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 --LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56654 444444 78899999999999999999853 343 34788889999999999999
Q ss_pred HHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 634 EDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 634 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
+..++++. .+.+...+..++.+|...|++++|...++++++++|+++..+..++.
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999875 45678899999999999999999999999999999999999888883
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-20 Score=193.21 Aligned_cols=345 Identities=8% Similarity=-0.066 Sum_probs=228.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV 385 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 385 (693)
+...+..++..+.+.|++++|...|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 556888999999999999999999998765 467788999999999999999999999999864 3356788888999
Q ss_pred HhcccchhhHHHHHHHHHHhCCCCch---hHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 043637 386 CAGLSEIKMGKEVHGFIHRNDYSSNI---FVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
+...|+++.|...++.+.+.. +.+. ..+..+...+...+ +..+...+...|++++|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR--------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH--------------------HHHHHHHHHHcCCHHHH
Confidence 999999999999999998754 3333 55555544421111 11222334445555555
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
++.|+++....+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...|++++|...++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555554444444555555555555555555555555555543221 34455555555555555555555555443
Q ss_pred CCCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 540 SLDVIICNSM------------ILGFCHNERGREALEVFGLMKKEGIKPD-----HITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 540 ~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+.+...+..+ +..+...|++++|...|+++.+ +.|+ ...+..+..++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233333333 6677777888888888887777 4555 2356666777778888888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH------------HHHhcC-----Ccc
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD------------KCRKNG-----YAT 663 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~------------~~~~~g-----~~~ 663 (693)
++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+...+..+.. .|...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 77642 23456777777788888888888888877763 2334455555552 233334 667
Q ss_pred HHHHHHHH-HhhcCCCCC
Q 043637 664 LGEWAARR-LNELNPWAP 680 (693)
Q Consensus 664 ~A~~~~~~-~~~~~p~~~ 680 (693)
++...+++ +++..|++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 78888886 788888654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-20 Score=193.24 Aligned_cols=432 Identities=7% Similarity=-0.051 Sum_probs=266.0
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHH
Q 043637 108 GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDA 187 (693)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 187 (693)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777788888888888888888887764 4567788888888888888888888888888775 4466777888888
Q ss_pred hhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH
Q 043637 188 YGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267 (693)
Q Consensus 188 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 267 (693)
+...|++++|...|+.+ ..+....+..+..+...+....|...++++.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc----------------------
Confidence 88888888888888633 2222222333444555555667777777774421 1000
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCch---hHHHHHHHHHh--------cCCHHHHHHHHhhC
Q 043637 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNII---SWTSIVSGYAI--------SGRIREARELFNEM 336 (693)
Q Consensus 268 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~ 336 (693)
....|+. ..+..+....+.+.+...+......+.. ....+...+.. .|++++|..+|+.+
T Consensus 158 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 158 -----SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0001121 2233345556666666666666554332 22233322222 24677888888887
Q ss_pred CC--CCc--------ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC
Q 043637 337 PE--RNV--------ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND 406 (693)
Q Consensus 337 ~~--~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 406 (693)
.+ |+. .++..+...+...|++++|...|++..+. .|+...+..+...+...|+++.|...++.+.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 66 331 24566667788888899999998888875 4556677777777888888888888888877654
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 043637 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLL 484 (693)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll 484 (693)
+.+..++..+...+...|++++|...+.+.+. ..+...|..+...+...|++++|.+.++++....+.+...+..+.
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 385 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34566677777777777777777777766654 224556666777777777777777777776655555555666666
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--------
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-------- 556 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-------- 556 (693)
.++...|++++|...++++.+........ ......+......+...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKI--------------------------HVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSC--------------------------SSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhh--------------------------HHHHHHHHHHHHHHHHHhhccchhh
Confidence 66777777777777776665532111000 00111122233344444
Q ss_pred --CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 557 --ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 557 --g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
|++++|...++++.+ ..|+ ...+..+..++...|++++|.+.++++.+
T Consensus 440 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666655 2342 35555555666666666666666666653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=199.30 Aligned_cols=234 Identities=8% Similarity=-0.106 Sum_probs=163.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK 524 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (693)
++..+...+...|++++|.+.+++..... |+...+..+...+...|+++.|...++++.+.... +...+..+..++..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence 34555566677777777777777776553 33667777777777788888888888777775543 55667777777778
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
.|++++|...++++. +.+...|..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 888888888777665 445667777788888888888888888887773 453 46777777888888888888888
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 601 FDSMRCKYGIIPQ----LEHYECMIKLYCRY----------GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 601 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
++++.+.....++ ...+..+..+|.+. |++++|+..++++. .+.+...+..++..+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 8877653211111 12244445666666 88888888887764 35556677777888888888888
Q ss_pred HHHHHHHHhhcCCCCCcc
Q 043637 665 GEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~~ 682 (693)
|...++++++++|+++..
T Consensus 481 A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 888888888888866544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-16 Score=169.53 Aligned_cols=387 Identities=11% Similarity=0.056 Sum_probs=288.6
Q ss_pred CCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCC--CCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHH
Q 043637 38 EPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYP--TPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAML 115 (693)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 115 (693)
-..++.......++|...|.+.+|.+++++++-.+- .-+....+.++.+-.+. +.....+..++...-+ ...+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA 1056 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIA 1056 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHH
Confidence 355667778889999999999999999999983321 13445666677666665 4555555555544222 45577
Q ss_pred HHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHH
Q 043637 116 GAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMT 195 (693)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 195 (693)
..+...|.+++|..+|++... .....+.++. ..++++.|.++.++. -+..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 888899999999999988631 1222233332 667888888887754 34678889999999999999
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC
Q 043637 196 DARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF 275 (693)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 275 (693)
+|++.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..++++.++++....+.+
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~------- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN------- 1191 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------
Confidence 999999765 677778889999999999999999998877654 333333458888888887775444421
Q ss_pred CCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 043637 276 EGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSL 355 (693)
Q Consensus 276 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 355 (693)
.++...+..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+-.+|...|
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhh
Confidence 345667777899999999999999999985 58999999999999999999999877 45688888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKC--GNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~ 433 (693)
++..|...... +..+...+..++..|.+.|.++++..+++...... +-....++-+..+|++- ++..++.+.
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 98888876653 44466677788889999999999999997776544 34555666666666654 455566677
Q ss_pred HHhhcCCC-------ChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 434 FYQMSQRR-------DKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 434 ~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
+...+.-| +...|..++..|.+.|+++.|....
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 77666643 4567889999999999999888443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-18 Score=173.59 Aligned_cols=321 Identities=11% Similarity=-0.051 Sum_probs=215.6
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDM 420 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (693)
+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456677778888888888888888887643 2234455555555666666666666666655542 2234455555555
Q ss_pred HHHcCChHHHHHHHHhhcCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 421 YRKCGNLRSARIWFYQMSQR-R----DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+...|++++|...+.+.+.. | +...+..+...+. ...+..+...+...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHH
Confidence 55555555555555554442 2 1111221110000 0001112455666777777
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
|...++++.+.... +...+..+..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 77777777665443 45666677777777777777777777654 45667888888888888888889888888887
Q ss_pred CCCCCh-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHH
Q 043637 573 GIKPDH-ITFH------------GILLACIHEGNVKLALQFFDSMRCKYGIIPQL----EHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 573 g~~p~~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 635 (693)
..|+. ..+. .+...+...|++++|...++++.+.. +.+. ..+..+..+|.+.|++++|+.
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45543 3332 23567889999999999999998632 2223 235567888999999999999
Q ss_pred HHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 636 FVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 636 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+++.. .+.+...+..++..+...|++++|...++++++++|+++.....|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999875 4557788889999999999999999999999999999988888877664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=170.09 Aligned_cols=280 Identities=9% Similarity=-0.043 Sum_probs=205.5
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 408 SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
+.+..++..+...+...|++++|...+.+.+.. .+...+..++..+...|++++|...++++....+.+...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 445555666667777777777777777666542 244556666677777777777777777776665556667777777
Q ss_pred HhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 486 ACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 486 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
.+...| ++++|...++++.+.... +...+..+..++...|++++|...+++.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 777777 777788877777765433 45667777777888888888888877765 4445667778888888888888
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 043637 562 ALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYG-------IIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 562 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
|.+.+++..+ ..|+ ...+..+...+...|++++|...++++.+... .+.+...+..++.+|.+.|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887 4454 57777778888888888888888888875321 133456778888888888888888
Q ss_pred HHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 634 EDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 634 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
+..+++.. .+.+...+..++..+...|++++|...++++++++|+++..+..++..|
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888774 3556677778888888888888888888888888888888888888766
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-16 Score=159.80 Aligned_cols=323 Identities=8% Similarity=-0.065 Sum_probs=220.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV 385 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 385 (693)
++..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +-+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677888999999999999999998865 456788889999999999999999999998863 2256778888889
Q ss_pred HhcccchhhHHHHHHHHHHhCCC--CchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 043637 386 CAGLSEIKMGKEVHGFIHRNDYS--SNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAM 463 (693)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 463 (693)
+...|+++.|...++...+.... .+...+..+...+. + ..+..+...+...|++++|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~-------------~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M-------------QRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H-------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H-------------HHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999875410 23334433321110 0 11222334455555566666
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---C
Q 043637 464 TSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---S 540 (693)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 540 (693)
+.++++....+.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|...+++.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6665555444445555555555556666666666666655554322 44555555556666666666666665544 2
Q ss_pred CCHHHHH------------HHHHHHHhCCChHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHhccCcHHHHHHHHHH
Q 043637 541 LDVIICN------------SMILGFCHNERGREALEVFGLMKKEGIKPDHI-----TFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 541 ~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.+...+. .+...+...|++++|...++++.+ ..|+.. .+..+..++...|++++|...+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2222222 336678889999999999999888 456532 244566888999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
+.+. .+.++..+..++.+|.+.|++++|...++++. .+.+...+..+..+..
T Consensus 298 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 298 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9852 34467888889999999999999999998874 2344555555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-16 Score=160.49 Aligned_cols=365 Identities=8% Similarity=-0.036 Sum_probs=211.7
Q ss_pred chHHHHHHHHHHHH----cCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 043637 278 DDVVLGSLTEMYVK----CGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTR 353 (693)
Q Consensus 278 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 353 (693)
+...+..+...|.. .+++++|...|++..+. .+...+..|...|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~ 87 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------------------------GYTPAEYVLGLRYMN 87 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHc
Confidence 55666666666666 66677665555543221 233344444444444
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--
Q 043637 354 ----SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAG----LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK-- 423 (693)
Q Consensus 354 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 423 (693)
.+++++|..+|++..+.| +...+..+-..+.. .++.+.|...++...+.| +...+..+...|..
T Consensus 88 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 88 GEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD 161 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 445555555555554433 22233333333333 445555555555554443 23344445555554
Q ss_pred --cCChHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCCh
Q 043637 424 --CGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSL 493 (693)
Q Consensus 424 --~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~ 493 (693)
.++.++|...+.+.....+..++..+...|.. .+++++|++.|++....+ +...+..+...+.. .++.
T Consensus 162 g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 55666666666665555555566666666665 566666666666665543 23344444444443 5666
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhC-----CChHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCHN-----ERGREAL 563 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----g~~~~A~ 563 (693)
++|...+++..+.+ +...+..+...|.. .++.++|...|++.. ..+...+..+...|... ++.++|+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 66666666666543 23344445555555 666777777776654 34455666666666665 6777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHH
Q 043637 564 EVFGLMKKEGIKPDHITFHGILLACIHEG---NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDF 636 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 636 (693)
..+++..+.| +...+..+...|...| ++++|.+.+++..+. .++..+..|...|.. .++.++|..+
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 3345555555655544 677777777777642 345666667777776 6777777777
Q ss_pred HHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCCC---CCcchhhhhhcc
Q 043637 637 VNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNPW---APFQFKITTNRF 690 (693)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~y 690 (693)
+++....+++..+..+...|.. .++.++|...++++.+.+|+ ++.+...|+.++
T Consensus 390 ~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 390 MRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 7776555566666677777766 67777777777777777743 666666666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=155.70 Aligned_cols=285 Identities=11% Similarity=-0.020 Sum_probs=193.0
Q ss_pred CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043637 339 RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL 418 (693)
Q Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 418 (693)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~~~ 63 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------------------------------------PFHASCLPVHI 63 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------------CCChhhHHHHH
Confidence 345556666666667777777777777766542 12223333344
Q ss_pred HHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRG-QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
.++...|++++|...+.+.+. ..+...|..+...+...| ++++|.+.|++.....+.+...+..+..++...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 444455555555554444443 123445555666666666 66666666666655554455566666666667777777
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
|...++++.+.... +...+..+...|...|++++|...+++.. +.+...+..+...+...|++++|...++++.+.
T Consensus 144 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 77777776665433 34445557777777777777777777654 456678888889999999999999999888773
Q ss_pred C--------CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 043637 573 G--------IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--F 642 (693)
Q Consensus 573 g--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 642 (693)
. .+.+..++..+..++...|++++|...++++.+. .+.+...+..+..+|.+.|++++|...++++. .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 1 0223578888999999999999999999999863 34467788899999999999999999999886 3
Q ss_pred CCCHHhHHHHHHHH-HhcCCc
Q 043637 643 NPTVPMLRKIFDKC-RKNGYA 662 (693)
Q Consensus 643 ~~~~~~~~~l~~~~-~~~g~~ 662 (693)
+.+...+..+...+ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 44666777777777 455554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-15 Score=156.99 Aligned_cols=401 Identities=10% Similarity=-0.027 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhcC----CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHH----cCChhHH
Q 043637 227 EAVVMFFKMLREDIRPLNFTFANALFACSF----LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVK----CGRLEDA 298 (693)
Q Consensus 227 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a 298 (693)
.++..+....+.| +...+..+...+.. .++.+.|...++...+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3456666655543 56677777777766 789999999999988764 56677778888888 7888877
Q ss_pred HhhhcCCCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Q 043637 299 RGLLDQPDER-NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQV 377 (693)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 377 (693)
...|++..+. +...+..|...|.... ...+++++|+.+|++..+.| +..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~---------------------------g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGN---------------------------GVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7666653322 3333444444444400 00444555555555444433 222
Q ss_pred hHHHHHHHHhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCChHHHHHHHHhhcCCCChhhHHHH
Q 043637 378 TLGLILNVCAG----LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK----CGNLRSARIWFYQMSQRRDKVSWNAV 449 (693)
Q Consensus 378 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l 449 (693)
.+..+-..+.. .++.+.|.+.++...+.+ +...+..+...|.. .++.++|...+.+.....+..++..+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 225 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHL 225 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33333333332 344555555555554433 34444555555555 56666666666665555555556666
Q ss_pred HHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 450 LTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 450 ~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
...|.. .+++++|.++|++....+. ...+..+...+.. .++.++|...+++..+.| +...+..+...
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 300 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 665554 5666666666666655432 2334444444444 566677777776666543 33445555666
Q ss_pred HHhh-----CCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc--
Q 043637 522 YTKC-----CCLEYAIRVFKESS-SLDVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPDHITFHGILLACIH-- 590 (693)
Q Consensus 522 ~~~~-----~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 590 (693)
|... ++.++|...+++.. ..+...+..+...|...| +.++|++.|++..+.| +...+..+...|..
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 6655 67777777776655 445556666777776655 6788888888888753 56677777777777
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhc
Q 043637 591 --EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKN 659 (693)
Q Consensus 591 --~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~ 659 (693)
.+++++|...+++..+. + ++..+..|...|.+ .++.++|..+|++... .+ ++.....+...+.
T Consensus 378 g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~-- 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA-- 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--
T ss_pred CCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--
Confidence 78888888888888752 3 46667778888877 7888888888887752 21 2223333333222
Q ss_pred CCccHHHHHHHHHhhcCCCCC
Q 043637 660 GYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+.+.|....+++++..|+..
T Consensus 452 ~~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 452 KQLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 234555656666666556443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=156.11 Aligned_cols=278 Identities=13% Similarity=0.094 Sum_probs=136.5
Q ss_pred cCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHH
Q 043637 54 SSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLD 133 (693)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 133 (693)
..|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557899999999988 3446899999999999999999999975 46777999999999999999999998877
Q ss_pred hhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHH
Q 043637 134 MNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWN 213 (693)
Q Consensus 134 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 213 (693)
.++. .+++.+.+.++.++.+.|+++.+.++++ .|+..+|..+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7764 5667889999999999999999998885 477789999999999999999999999987 4899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcC
Q 043637 214 VIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCG 293 (693)
Q Consensus 214 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 293 (693)
.++.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCC
Confidence 9999999999999999999988 3778999999999999999999554443 2233334557889999999
Q ss_pred ChhHHHhhhcCCCC---CCchhHHHHHHHHHh--cCCHHHHHHHHhhCCC--------CCcccHHHHHHHHHhCCCHHHH
Q 043637 294 RLEDARGLLDQPDE---RNIISWTSIVSGYAI--SGRIREARELFNEMPE--------RNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 294 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a 360 (693)
++++|..+++.... .....|+.+.-.|++ .++..+.++.|..-.. .+...|..+...|...++++.|
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 99999999987654 344577777777765 5677788888876554 3578899999999999999988
Q ss_pred HHHH
Q 043637 361 LDFV 364 (693)
Q Consensus 361 ~~~~ 364 (693)
...+
T Consensus 302 ~~tm 305 (449)
T 1b89_A 302 IITM 305 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-16 Score=146.64 Aligned_cols=257 Identities=10% Similarity=-0.010 Sum_probs=209.7
Q ss_pred HHHHHcCChHHHHHHHHhhcCC-CCh--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQR-RDK--VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+-....|++..|+..+...... |+. .....+.++|...|++++|+..++. ..+|+..++..+...+...++.+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3455678999997777665543 332 2445577899999999999876644 347778888999999999999999
Q ss_pred HHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 043637 496 GKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGI 574 (693)
Q Consensus 496 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 574 (693)
|.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+ .
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 999999998876555 455667777899999999999999999 67888999999999999999999999999999 4
Q ss_pred CCChHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhH
Q 043637 575 KPDHITF---HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPML 649 (693)
Q Consensus 575 ~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 649 (693)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..+..++.++.+.|++++|+..++++. .+.++.++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5765322 22334455669999999999999963 56688899999999999999999999999875 46677789
Q ss_pred HHHHHHHHhcCCccH-HHHHHHHHhhcCCCCCcchh
Q 043637 650 RKIFDKCRKNGYATL-GEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~ 684 (693)
..++..+...|+..+ +.+.++++++++|+++....
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999876 67899999999999986644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=157.48 Aligned_cols=284 Identities=7% Similarity=-0.072 Sum_probs=132.2
Q ss_pred hcCCHHHHHH-HHhhCCC-----C--CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh
Q 043637 322 ISGRIREARE-LFNEMPE-----R--NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK 393 (693)
Q Consensus 322 ~~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 393 (693)
..|++++|.. .|++... | +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456667776 6665443 1 34567777888888888888888888887642 123334444444444444444
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 043637 394 MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET 473 (693)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 473 (693)
.|...++.+.+.. +. +..++..+...+...|++++|.+.++++....
T Consensus 116 ~A~~~~~~al~~~-~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 116 LAISALRRCLELK-PD--------------------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHHHC-TT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcC-CC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444444443332 22 33444555555555555555555555554443
Q ss_pred CCCHHHHHH---------------HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 474 RPSKFTFET---------------LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 474 ~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+.+...+.. .+..+...|++++|...++++.+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------------------- 214 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS---------------------------- 214 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS----------------------------
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc----------------------------
Confidence 222111111 1111124455555555555554432221
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 043637 539 SSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY 617 (693)
Q Consensus 539 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 617 (693)
++..++..+...+...|++++|...++++.+ +.|+ ...+..+...+...|++++|...++++.+. .+.+...+
T Consensus 215 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 288 (368)
T 1fch_A 215 --IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSR 288 (368)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 0234444444445555555555555555444 2332 344444445555555555555555554431 12234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCC-----------HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRMP--FNPT-----------VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
..++.+|.+.|++++|...++++. .+.+ ...|..+..++...|+.++|..++++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 455555555555555555554442 0111 3445555555555555555555544433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=151.63 Aligned_cols=220 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred ccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHH
Q 043637 89 KCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGL 168 (693)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (693)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 49999999999999999999999653 5788999999999999999999998887
Q ss_pred HHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH
Q 043637 169 IVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA 248 (693)
Q Consensus 169 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 248 (693)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45578899999999999999999888863 67778999999999999999999999976 3677
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHH
Q 043637 249 NALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (693)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 7777777777777777776665 256666667777777777776655554433 222223334444555555555
Q ss_pred HHHHHhhCC
Q 043637 329 ARELFNEMP 337 (693)
Q Consensus 329 A~~~~~~~~ 337 (693)
|..+++...
T Consensus 226 ai~lLe~aL 234 (449)
T 1b89_A 226 LITMLEAAL 234 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=157.61 Aligned_cols=215 Identities=9% Similarity=-0.030 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-------cCChH-------HHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACAN-------ISSLE-------QGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+++..+|++.....+.+...|......+.. .|+++ +|..++++..+.-.+-+...+..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 367788888776656677777777777764 68877 8899999888632233677888899999999
Q ss_pred CCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HhccCcHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SL-DV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA-CIHEGNVKLALQ 599 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~ 599 (693)
|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++|++..+. .|+ ...|...... +...|++++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999876 44 33 48999999999999999999999999984 454 3444333322 335899999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-C----HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-NP-T----VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
+|++..+. .+.++..|..++..+.+.|+.++|..+|++... .| + ...|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999864 234578889999999999999999999998752 22 2 3378888888888999999999999999
Q ss_pred hcCCC
Q 043637 674 ELNPW 678 (693)
Q Consensus 674 ~~~p~ 678 (693)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 99985
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=158.21 Aligned_cols=217 Identities=10% Similarity=-0.044 Sum_probs=113.0
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------------
Q 043637 458 QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK------------- 524 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 524 (693)
++++|.+.+++.....+.+...+..+...+...|++++|...+++..+..+. +...+..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4445555555544444444444555555555555555555555555543322 23333333333321
Q ss_pred ------hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHH-HHhccC
Q 043637 525 ------CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILL-ACIHEG 592 (693)
Q Consensus 525 ------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g 592 (693)
.+..++|...+++.. +.+...+..+...+...|++++|++.|++..+....|.. ..+..+.. .....|
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 233566777776654 455667888999999999999999999999984332221 12333332 345778
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
++++|+..+++..+ +.|+........ +.+..++++.. .+.++..+..++..+...|++++|.+.++
T Consensus 387 ~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 387 CEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp CHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999874 455543322222 22333443332 35567789999999999999999999999
Q ss_pred HHhhcCCCCCcchhhhh
Q 043637 671 RLNELNPWAPFQFKITT 687 (693)
Q Consensus 671 ~~~~~~p~~~~~~~~l~ 687 (693)
+++++.|.+|.+..-+|
T Consensus 455 kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 455 RGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----------------
T ss_pred HHHhcCCCCCcHhhcCC
Confidence 99999999998876665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=159.48 Aligned_cols=266 Identities=9% Similarity=-0.073 Sum_probs=205.3
Q ss_pred HHHcCChHHHHH-HHHhhcCC----C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 421 YRKCGNLRSARI-WFYQMSQR----R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 421 ~~~~~~~~~a~~-~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+...|++++|.. .+.+.+.. | +...+..+...+.+.|++++|+..|+++....+.+...+..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334567777766 66655542 1 3456777888888888888888888888877777778888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHH---------------HHHHHHh
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNS---------------MILGFCH 555 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~---------------l~~~~~~ 555 (693)
++|...++++.+.... +...+..+..+|...|++++|...++++. +.+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888888886543 66778888888888888888888888765 222222221 2333448
Q ss_pred CCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.|++++|...++++.+ ..|+ ..++..+...+...|++++|...++++.+. .+.+...+..++..|.+.|++++
T Consensus 194 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999998 4565 678889999999999999999999999863 34467889999999999999999
Q ss_pred HHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC-----------Ccchhhhhhccc
Q 043637 633 LEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA-----------PFQFKITTNRFD 691 (693)
Q Consensus 633 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~y~ 691 (693)
|+..++++. .+.+...+..++..+...|++++|...+++++++.|++ +..+..++.+|.
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999875 45667889999999999999999999999999999987 677888887764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=160.91 Aligned_cols=233 Identities=10% Similarity=-0.078 Sum_probs=188.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
+...|..+...+.+.|++++|++.|+++....+.+..++..+..++...|++++|...++++.+.... +...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34558888888888999999999999887777777888888888888999999999999988886543 56778888888
Q ss_pred HHhhCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHH
Q 043637 522 YTKCCCLEYAIRVFKESSS--LD-----------VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGIL 585 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 585 (693)
|...|++++|...++++.. |+ ...+..+...+...|++++|.+.++++.+. .|+ ..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH
Confidence 9999999999998887662 21 223345588899999999999999999994 554 68889999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcc
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 663 (693)
..+...|++++|+..++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..++..|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999986 344568889999999999999999999999875 4556788999999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 043637 664 LGEWAARRLNELNPWA 679 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~~ 679 (693)
+|...+++++++.|++
T Consensus 299 ~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999999873
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-16 Score=153.49 Aligned_cols=262 Identities=11% Similarity=0.002 Sum_probs=147.2
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 34557777777888888888888888776642 122333444444
Q ss_pred HHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC----------HHHHHHHHHHh
Q 043637 420 MYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPS----------KFTFETLLAAC 487 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~----------~~~~~~ll~~~ 487 (693)
++...|++++|+..+.+.+. ..+..+|..+...|...|++++|++.|+++....+.+ ...+..+...+
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 55555555555554444443 1234455666666666666666666666654432111 12233446666
Q ss_pred cccCChHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
...|++++|...++++.+.... .+...+..+..+|...|++++|...+++.. +.+..+|..+..++...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777765433 145556666666666666666666666544 344556666666666666666666
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------CChhHHHHHHHHHHhcCChHH
Q 043637 564 EVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGII----------PQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 564 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~ 632 (693)
+.++++.+ +.|+ ..++..+..+|...|++++|...++++.+...-. .+...|..+..++...|+.+.
T Consensus 268 ~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 268 EAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 66666666 3443 4556666666666666666666666665421110 024455566666666666666
Q ss_pred HHHHHHh
Q 043637 633 LEDFVNR 639 (693)
Q Consensus 633 A~~~~~~ 639 (693)
|....++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6655544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-13 Score=142.24 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHh-------cCChH-------HHHHHHHHhhhC-CCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 442 DKVSWNAVLTGYAR-------RGQSE-------EAMTSFSEMQWE-TRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 442 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+...|..++..+.+ .|+++ +|.++|++.... .+.+...+..++..+...|++++|..+++++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44455555555543 46655 667777776652 2445666666666666677777777777777664
Q ss_pred CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-CHHHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCC-hHHH
Q 043637 507 CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SL-DVIICNSMILG-FCHNERGREALEVFGLMKKEGIKPD-HITF 581 (693)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 581 (693)
...-....|..++..+.+.|++++|..+|++.. .| +...|...+.. +...|+.++|..+|++..+ ..|+ ...|
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~ 428 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYV 428 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHH
Confidence 322112466666666777777777777777655 12 22333322222 3357888888888888887 4564 5778
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..++..+.+.|+.++|..+|+++.......|+ ...|...+....+.|+.+.+..+.+++.
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888899998888753223332 3367777777778888888888887764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-16 Score=151.64 Aligned_cols=259 Identities=10% Similarity=-0.050 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS 492 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 492 (693)
..+...+...|++++|...+.+.+. ..+..++..+...+...|++++|.+.++++....+.+...+..+...+...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 3344444555555555444444433 12334455555555555555555555555544444445555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHH--------------HH-HHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 043637 493 LEQGKQIHCFVIRNCYEINVVCRGAL--------------VE-VYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC 554 (693)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 554 (693)
+++|...++++.+.... +...+..+ .. .+...|++++|...++++. +.+...+..+...+.
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55555555555543222 11111111 11 2555666677766666654 445667777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 555 HNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
..|++++|.+.++++.+ ..|+ ..++..+...+...|++++|...++++.+ ..+.+...+..++..|.+.|++++|
T Consensus 184 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHH
Confidence 77777777777777776 3443 46677777777777777777777777764 2234566677777777777777777
Q ss_pred HHHHHhCC--CCC------------CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 634 EDFVNRMP--FNP------------TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 634 ~~~~~~~~--~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
...++++. .+. +...+..+...+...|+.++|...+++.++..|+
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 77777663 122 3556777777777777887777777776665553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=142.16 Aligned_cols=264 Identities=9% Similarity=-0.045 Sum_probs=185.3
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~------- 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA------- 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH-------
Confidence 34556777778888888888888888887653 1234444445555555555555555555554432 22333
Q ss_pred HHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH--------------HH
Q 043637 420 MYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL--------------LA 485 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l--------------l~ 485 (693)
++..+...+...|++++|.+.++++....+.+...+..+ ..
T Consensus 91 -------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 91 -------------------------VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 444444455555555555555555544332222222222 22
Q ss_pred -HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 486 -ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 486 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
.+...|++++|...++++.+.... +...+..+...|...|++++|...++++. +.+...+..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 367778888888888888876544 66778888888888899999988888765 5567789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----------ChhHHHHHHHHHHhcCC
Q 043637 562 ALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-----------QLEHYECMIKLYCRYGY 629 (693)
Q Consensus 562 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~ 629 (693)
|...++++.+ ..| +...+..+...+...|++++|.+.++++.+. .-.. +...+..+..+|.+.|+
T Consensus 225 A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 225 ALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 9999999988 456 4678888999999999999999999999853 2111 46788899999999999
Q ss_pred hHHHHHHHHhCC
Q 043637 630 MKELEDFVNRMP 641 (693)
Q Consensus 630 ~~~A~~~~~~~~ 641 (693)
.++|..++++..
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-14 Score=134.20 Aligned_cols=191 Identities=12% Similarity=-0.024 Sum_probs=99.9
Q ss_pred hhHHHHHHHHhcccchhhHHHHHHHHHHhCC-CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 043637 377 VTLGLILNVCAGLSEIKMGKEVHGFIHRNDY-SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR 455 (693)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (693)
.++..+...+...++.+.+.+.++.+...+. +.+...+..+...+...|++++|+..+.+ ..+...+..++..+.+
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444444332 22344455566777778888888776666 3456677777777888
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHH--HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPSKFTF--ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIR 533 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (693)
.|++++|.+.|+++....+.+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765542221111 1122333344666666666666666532 244444444444444444444444
Q ss_pred HHhcCC---CCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHH
Q 043637 534 VFKESS---SLDVIICNSMILGFCHNERGRE-ALEVFGLMKK 571 (693)
Q Consensus 534 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 571 (693)
.+++.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444433 2334444444444444444433 2344444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-15 Score=138.33 Aligned_cols=235 Identities=9% Similarity=-0.083 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc--c----hhHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI--N----VVCRGA 517 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 517 (693)
..+..+...+...|++++|++.|++..... .+...+..+..++...|++++|...++++.+..... + ...+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 346666777777788888888887776665 667777777888888888888888888777633221 1 567777
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
+..+|...|++++|...+++.. .|+. ..+...|++++|...++++.. ..|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888766 4443 345566788999999999988 5664 46788888999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++|...++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..++..+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986 334567888899999999999999999999875 4556778888999999999999999999999
Q ss_pred hhcC------CCCCcchhhhhhcc
Q 043637 673 NELN------PWAPFQFKITTNRF 690 (693)
Q Consensus 673 ~~~~------p~~~~~~~~l~~~y 690 (693)
++++ |++......++..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHhChhhcCCCchHHHHHHHHHhh
Confidence 9999 88877777666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=165.51 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=120.7
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccC-------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQ-------NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA 248 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 248 (693)
.-..+|++||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345688888888888888888888886653 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-----CchhHHHHHHHHHh
Q 043637 249 NALFACSFLSSP-YEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-----NIISWTSIVSGYAI 322 (693)
Q Consensus 249 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~ 322 (693)
++|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999885 678999999999999999999999998888887777776665544431 12333444455554
Q ss_pred cC
Q 043637 323 SG 324 (693)
Q Consensus 323 ~g 324 (693)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=137.37 Aligned_cols=240 Identities=8% Similarity=-0.051 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHh
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN--VVCRGALVEVYTK 524 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 524 (693)
......+...|++++|+..|++.....+.+...+..+..++...|++++|...++++.+....++ ...+..+..+|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33445555666666666666666555444444555566666666666666666666665221111 2235566666666
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
.|++++|...+++.. +.+...|..+...+...|++++|++.+++..+ +.|+ ...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766666554 44556777777777788888888888877777 3554 45555555344445588888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HHhHHHHHHHHHhcCCccHHHH
Q 043637 601 FDSMRCKYGIIPQLEHYECMIKLYCRYGY---MKELEDFVNRMP----FNPT------VPMLRKIFDKCRKNGYATLGEW 667 (693)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~A~~ 667 (693)
++++.+. .+.+...+..+..++...|+ .++|...++++. ..|+ ...+..++..|...|++++|..
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887752 23345666667777777776 666666666553 1122 1466678888889999999999
Q ss_pred HHHHHhhcCCCCCcchhhhhhcc
Q 043637 668 AARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 668 ~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.++++++++|+++.+...++.+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999998888777654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-16 Score=161.63 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKES-------SSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI 584 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 584 (693)
..+|++++++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345556666666666666666655432 2578888888888888888888888888888888888888888888
Q ss_pred HHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 585 LLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 585 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
|.++++.|+ .++|.++|++|.++ |+.||..+|+.++....+.+-++...++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 888888887 46788888888864 8888888888877766666544444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-13 Score=136.83 Aligned_cols=364 Identities=9% Similarity=-0.069 Sum_probs=214.5
Q ss_pred cccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC-CCchHHHHHHHH
Q 043637 209 AVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF-EGDDVVLGSLTE 287 (693)
Q Consensus 209 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~ 287 (693)
...||.|...+...|++++|++.|++..+. ......... .....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 445777777778888888888887765431 000000001 123456777788
Q ss_pred HHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHh--CCCHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAMLAGYTR--SLLWKEAL 361 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~--~~~~~~a~ 361 (693)
+|...|++++|...++ ++.++......+ ...++..+..++.. .+++++|+
T Consensus 103 ~y~~~g~~~~A~~~~~------------------------ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~ 158 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVD------------------------KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158 (472)
T ss_dssp HHHHTTCHHHHHHHHH------------------------HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHcCChHHHHHHHH------------------------HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHH
Confidence 8888888887777766 444444443331 12234444434333 34577777
Q ss_pred HHHHHHHHcCCCCCH-hhHHHHHHH---HhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCChHHHHHH
Q 043637 362 DFVFLMRKTTKDIDQ-VTLGLILNV---CAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK----CGNLRSARIW 433 (693)
Q Consensus 362 ~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 433 (693)
..|++..+. .|+. ..+..+..+ +...++.+.|.+.++...+.. +.+..++..+...+.. .++.++|...
T Consensus 159 ~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 159 VCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777776654 3432 222222222 234455566666666665543 3344444444444433 3456667666
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-------------------cCC
Q 043637 434 FYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN-------------------ISS 492 (693)
Q Consensus 434 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-------------------~~~ 492 (693)
+.+... ..+..++..+...|...|++++|++.+++.....+.+..++..+..++.. .+.
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~ 315 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 666544 23555677777777778888888887777766555555666555544422 123
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHH----HHHHHHH-HHHhCCChHHHHHH
Q 043637 493 LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVI----ICNSMIL-GFCHNERGREALEV 565 (693)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~----~~~~l~~-~~~~~g~~~~A~~~ 565 (693)
.+.|...++...+.... +...+..+...|...|++++|...|++.. .++.. .+..+.. .....|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677777777775543 55677888999999999999999998765 33322 2333332 34578999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 566 FGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+++..+ +.|+...... ....+.++++...+ ..+.++..|..+..+|...|++++|++.+++..
T Consensus 395 y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 395 FIEGVK--INQKSREKEK---------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999 7787543322 23444556666654 345568889999999999999999999999886
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=138.83 Aligned_cols=243 Identities=7% Similarity=-0.051 Sum_probs=197.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC-hHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS-LEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
...|..+...+.+.|++++|++.+++.....+-+...|..+..++...|+ +++|...++++++...+ +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34577777788888888888888888877767777888888888888886 88898888888887655 67778888888
Q ss_pred HHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhc-cCcHHH
Q 043637 522 YTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIH-EGNVKL 596 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~-~g~~~~ 596 (693)
+...|++++|+..|+++. +.+...|..+..++...|++++|+..++++++ +.|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 888899999999888876 56778999999999999999999999999999 6775 5788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------
Q 043637 597 A-----LQFFDSMRCKYGIIPQLEHYECMIKLYCRYG--YMKELEDFVNRMPF-NPTVPMLRKIFDKCRKNG-------- 660 (693)
Q Consensus 597 A-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g-------- 660 (693)
| +..++++.+ -.+-+...|..+..+|.+.| +.++|++.++++.. +.+...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 588888875 22335677888888888888 68999999888743 445667888888888764
Q ss_pred -CccHHHHHHHHH-hhcCCCCCcchhhhhhcc
Q 043637 661 -YATLGEWAARRL-NELNPWAPFQFKITTNRF 690 (693)
Q Consensus 661 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~y 690 (693)
.+++|...++++ .+++|.....|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 258999999999 999999998888887655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-14 Score=130.53 Aligned_cols=212 Identities=10% Similarity=-0.037 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...+...|++++|...|+++....+.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD---------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Confidence 3455555555556666666666665554444444555555555555555555555554444322
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++
T Consensus 88 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 ----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 335667777888888899999999999998884 44 56778888899999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
++.+ ..+.+...+..++..|.+.|++++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++
T Consensus 150 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 9885 334567788889999999999999999998875 455677888999999999999999999999999999999
Q ss_pred cchhhhhhccc
Q 043637 681 FQFKITTNRFD 691 (693)
Q Consensus 681 ~~~~~l~~~y~ 691 (693)
..+..++.+..
T Consensus 228 ~~~~~~~~l~~ 238 (243)
T 2q7f_A 228 LALHAKKLLGH 238 (243)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHh
Confidence 99888877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=123.68 Aligned_cols=204 Identities=13% Similarity=-0.010 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
...+..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3445555556666666666666666665555555566666666666666666666666666554332 233333444444
Q ss_pred HhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
...+. . ... .....|++++|+..+++..+ +.|+ ...+..+..++...|++++|+..+
T Consensus 84 ~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 84 VALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33300 0 000 00011555555555555555 3443 344555555555566666666666
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+++.+. . .++..+..+..+|...|++++|+..+++.. .+.+...+..+...+...|++++|...++++
T Consensus 142 ~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 142 KQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 655542 3 455555555555666666666665555553 2344445555555555566666665555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-13 Score=136.05 Aligned_cols=372 Identities=8% Similarity=-0.056 Sum_probs=235.0
Q ss_pred HHHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCH---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----CH
Q 043637 287 EMYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRI---REARELFNEMPERNVISWNAMLAGYTRSL-----LW 357 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 357 (693)
..+.+.|++++|...|++..+ .+...+..+...|...|+. ++|...|+...+.+...+..+...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 334445555555555544332 2333444444445555555 67777777776666666777777555544 67
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh---hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHH-
Q 043637 358 KEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK---MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIW- 433 (693)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 433 (693)
++|+.+|++..+.|... .+..+-..+...+..+ .+.+.+......| +......+...|...+.++.+...
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 88888888888866433 4444444554444433 3444444444444 345666777788888865554444
Q ss_pred --HHhhcCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhccc----CChHHHHHHHHHHH
Q 043637 434 --FYQMSQRRDKVSWNAVLTGYARRG---QSEEAMTSFSEMQWETRPSKFTFETLLAACANI----SSLEQGKQIHCFVI 504 (693)
Q Consensus 434 --~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 504 (693)
+.+.....+..++..+...|...| +.++|++.|++....+.++...+..+...|... ++.++|...|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 333344455668888999999999 899999999999999888888777777777665 79999999999987
Q ss_pred HhCCCcchhHHHHHHHH-H--HhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCC
Q 043637 505 RNCYEINVVCRGALVEV-Y--TKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNE-----RGREALEVFGLMKKEGIK 575 (693)
Q Consensus 505 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~ 575 (693)
.| ++..+..+... | ...++.++|...|++.. ..+...+..+...|. .| ++++|.+.|++.. .|
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 33 45556666666 3 46889999999999877 557778888888877 44 8999999999877 33
Q ss_pred CChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHH
Q 043637 576 PDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPFNPTVP 647 (693)
Q Consensus 576 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 647 (693)
+...+..|...|.. ..++++|...+++..+ .| ++.....|...|.. ..+.++|..++++....++..
T Consensus 317 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 317 -EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp -CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred -CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55667777766665 4499999999999875 34 34455667777764 568999999999887666666
Q ss_pred hHHHHHHHHHh--cCCccHHHHHHHHHhhcCC
Q 043637 648 MLRKIFDKCRK--NGYATLGEWAARRLNELNP 677 (693)
Q Consensus 648 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 677 (693)
....+...... .++..+|...++...+-.|
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 54444443322 3466777777777766544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-13 Score=126.32 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=151.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
...|..+...+...|++++|.+.|+++....+.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 34556666666667777777777666655444445555555555555555555555555554432
Q ss_pred HhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
+.+...+..+...+...|++++|.+.++++.+.+..|+ ...+..+...+...|++++|...+
T Consensus 102 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 102 -----------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23555677777888888888888888888877444564 467777788888999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+++.+. .+.+...+..++..|.+.|++++|...++++. .+.+...+..+...+...|+.++|...+++++++.|++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 988752 33457778888889999999999999988774 34566677788888889999999999999999999988
Q ss_pred Ccchhhh
Q 043637 680 PFQFKIT 686 (693)
Q Consensus 680 ~~~~~~l 686 (693)
+.....+
T Consensus 243 ~~~~~~l 249 (252)
T 2ho1_A 243 LEYQEFQ 249 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=124.55 Aligned_cols=231 Identities=10% Similarity=-0.109 Sum_probs=178.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
+..++..+...+...|++++|++.|++....+ +...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 34455566666667777777777777766532 33455666666666 777777777777777654 5566667
Q ss_pred HHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 518 LVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 518 l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
+...|.. .+++++|...+++.. ..+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 788888888877665 4467788888888888 899999999999999965 556777777888
Q ss_pred hc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHhHHHHHHHHHh--
Q 043637 589 IH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRK-- 658 (693)
Q Consensus 589 ~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 658 (693)
.. .+++++|...+++..+. .++..+..+...|.+ .+++++|+..+++.....+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 87 89999999999999862 256778889999999 99999999999988655567788888899988
Q ss_pred --cCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 659 --NGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 659 --~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.+++++|...++++.++.|+++....
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999996554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-13 Score=123.53 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=142.6
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC-
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN- 556 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~- 556 (693)
..+...+...|++++|...++++.+.... +...+..+..+|...|++++|...+++.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 33333444444444444444444433221 23344444445555555555555554433 34566777788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..|.+.|++++|..
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998888444454 467788888999999999999999998852 33457778888999999999999999
Q ss_pred HHHhCC--CC-CCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 636 FVNRMP--FN-PTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 636 ~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
.++++. .+ .+...+..+...+...|+.+.|...++.+.+.+|+++.....+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 224 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhcc
Confidence 998875 34 566677777777888999999999999999999988877666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=125.28 Aligned_cols=177 Identities=11% Similarity=-0.122 Sum_probs=153.8
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGIL 585 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 585 (693)
++...+..+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..+++..+ +.|+ ...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 355666777778888888888888888755 55677899999999999999999999999999 5675 57888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 586 LACIHE-----------GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 586 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
.++... |++++|+..++++.+. .+-+...+..+..+|...|++++|+..+++.. . .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 999999 9999999999999852 33457788899999999999999999999874 4 778899999
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+...|++++|...++++++++|+++..+..++.+|.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=129.88 Aligned_cols=221 Identities=8% Similarity=-0.116 Sum_probs=155.5
Q ss_pred cCChHHHHHHHHHhhhCC----CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHH
Q 043637 456 RGQSEEAMTSFSEMQWET----RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYA 531 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 531 (693)
.|++++|++.|+++.... +.+...+..+..++...|++++|...++++.+.... +...+..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 356677777777765543 123456666677777777777777777777765433 556677777777777777777
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043637 532 IRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKY 608 (693)
Q Consensus 532 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 608 (693)
...+++.. +.+...+..+...+...|++++|.+.++++.+ +.|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 77777665 44567788888888888888888888888888 5666555555555667778888888888777752
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 609 GIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFN-P-----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 609 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+++...+ .++..+...++.++|...+++.... + +...+..++..+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444443 3666777778888888888776522 1 14567778888888888888888888888888876553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-12 Score=128.61 Aligned_cols=184 Identities=9% Similarity=-0.050 Sum_probs=111.1
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCCh---hhHHHhhccCCCCCcccHHHHHHHHHhCC-
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNL---DDARGLFDEMPERDGGSWNAMLGAYTQNG- 122 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~- 122 (693)
.+...+.+.|++++|.++|+.+.+.| ++..+..+...|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 46677788899999999999998886 345555677777778888 99999999887778888888888666665
Q ss_pred ----ChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCCh---HHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC---
Q 043637 123 ----FPGRTLELFLDMNHSGVSANQITYANVLRSSAEELEL---GVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM--- 192 (693)
Q Consensus 123 ----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 192 (693)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+....+.| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999887633 2566666666655443 33455555555554 3455566666666666
Q ss_pred -CHHHHHHHHhccCCCCcccHHHHHHHHHhcC---CchHHHHHHHHHHHCC
Q 043637 193 -VMTDARRMFDDIQNKNAVSWNVIVRRYLVAG---NGKEAVVMFFKMLRED 239 (693)
Q Consensus 193 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g 239 (693)
+.+.+..++......+..++..|...+...| +.++|++.|++..+.|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 4455555666666666667888888888888 7788888888877765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-12 Score=121.19 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=184.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CC--CHHHHHHHHHHhc
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RP--SKFTFETLLAACA 488 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p--~~~~~~~ll~~~~ 488 (693)
.......+...|++++|+..+.+.+.. | +...+..+...+...|++++|++.+++..... .| ....+..+..++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444566777888888888888777652 3 45578888888888999999999998887643 22 2445788888899
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEV 565 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (693)
..|++++|...+++..+.... +...+..+..+|...|++++|...+++.. +.+...|..+...+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886544 56788899999999999999999999887 45666777777344555699999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHH
Q 043637 566 FGLMKKEGIKPD-HITFHGILLACIHEGN---VKLALQFFDSMRCKYGIIPQL------EHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 566 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 635 (693)
++++.+ +.|+ ...+..+..++...|+ +++|...++++.+.....|+. ..|..+...|.+.|++++|..
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 5675 5777778888888888 888999999887643334442 577889999999999999999
Q ss_pred HHHhCC--CCCCHHhHHHHHHHH
Q 043637 636 FVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 636 ~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
.++++. .+.++..+..+....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 999885 444555555444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-12 Score=121.03 Aligned_cols=223 Identities=11% Similarity=-0.013 Sum_probs=137.8
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC--CCCchhHHHHHHHH
Q 043637 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND--YSSNIFVSNALLDM 420 (693)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 420 (693)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...++...+.. ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45556666667777777777777766655 445555555555555555555555555544321 000100
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
....++..+...+...|++++|.+.|++..... |+. ..+...|++++|...+
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH-------HHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-chh-------HHHHHHhHHHHHHHHH
Confidence 002344445555555555555555555554332 221 2233445566666666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
+.+...... +...+..+...+...|++++|...+++.. +.+...|..+...+...|++++|.+.+++..+ ..|+
T Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~ 205 (258)
T 3uq3_A 129 EAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPN 205 (258)
T ss_dssp HHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHH
Confidence 666553322 44556666666777777777777776654 45667788888888888999999999988888 4554
Q ss_pred -hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 578 -HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 578 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...+..+..++...|++++|...++++.+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57788888888899999999999888875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-13 Score=126.04 Aligned_cols=216 Identities=8% Similarity=-0.123 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+..+...+...|++++|.+.|++.....+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHh
Confidence 4444444444555555555555544443444445555555555555555555555555543322 344455555555555
Q ss_pred CCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
|++++|...++++. .|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|...+++
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 55555555555544 233222333333345557777777777666653 22233333 355566666677777777766
Q ss_pred hHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 604 MRCKYGIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 604 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
+.. ..|. ...+..++..|.+.|++++|...++++. ..|+. +.....++...|++++|...+
T Consensus 203 ~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred Hhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 642 1221 4556667777777777777777777664 22321 222344555666666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=116.31 Aligned_cols=167 Identities=9% Similarity=-0.063 Sum_probs=139.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILL 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 586 (693)
+..+|..+...|.+.|++++|+..|++.. +.+...|..+..++...|++++|...+.+... ..|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 45566777777777777777777777665 55677888899999999999999999999988 4564 567777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
.+...++++.|...+++... -.+.+...+..+..+|.+.|++++|+..+++.. .+.+...+..++..+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999985 344567788889999999999999999999875 46677889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCc
Q 043637 665 GEWAARRLNELNPWAPF 681 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~ 681 (693)
|...++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999997643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=120.90 Aligned_cols=196 Identities=10% Similarity=0.024 Sum_probs=116.6
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.....+..+...+...|++++|...+.+.+.. .+...+..+...+...|++++|++.+++.....+.+...+..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35567778888899999999999999888763 3677888899999999999999999999987777778888888889
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
+...|++++|...++++.+.... +...+ ..+...+...|++++|...+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLF-------------------------------YMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHH-------------------------------HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHH-------------------------------HHHHHHHHHhccHHHHHHHH
Confidence 99999999999999888875432 33334 44444455555555555555
Q ss_pred HHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 567 GLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 567 ~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+++.+. .| +...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555542 23 2344555555555555555555555555531 2233445555555555555555555555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=115.65 Aligned_cols=195 Identities=10% Similarity=-0.053 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACA 488 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~ 488 (693)
...+..+...+...|++++|...+.+.+. ..+...+..+...+...|++++|.+.++++....+.+...+..+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788888999999999999999988876 3467788999999999999999999999998776667788888888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFG 567 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (693)
..|++++|...++++.+.+..| +...+.. +...+...|++++|.+.++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFEN-------------------------------LGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHH-------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHH-------------------------------HHHHHHHcCCHHHHHHHHH
Confidence 8999999988888877622222 2333444 4444445555555555555
Q ss_pred HHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 568 LMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 568 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++.+. .| +...+..+...+...|++++|...++++.+ ..+.+...+..+...+.+.|+.++|...++++
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55442 23 234444455555555555555555555542 22233444445555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-12 Score=123.04 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 043637 412 FVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQ-SEEAMTSFSEMQWETRPSKFTFETLLAACA 488 (693)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~ 488 (693)
.++..+..++.+.|++++|+..+.+.+. .| +..+|+.+...+...|+ +++|+..|++.....+-+...|..+..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455566667777778888777777665 23 56677777778888886 888888888877776667778888888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh-CCChHHH--
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCH-NERGREA-- 562 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~-~g~~~~A-- 562 (693)
..|++++|...++++++.... +...|..+..++.+.|++++|+..++++. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 888888888888888876554 66777778888888888888888888766 5567788888888888 5665777
Q ss_pred ---HHHHHHHHHCCCCCC-hHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--------
Q 043637 563 ---LEVFGLMKKEGIKPD-HITFHGILLACIHEG--NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG-------- 628 (693)
Q Consensus 563 ---~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 628 (693)
++.+++.++ +.|+ ...|..+...+...| ++++|++.+.++ + ..+.+...+..++.+|.+.|
T Consensus 257 ~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 257 EREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 588888888 6775 577888888888877 688898888877 2 34456777888888988874
Q ss_pred -ChHHHHHHHHhC--CCCC-CHHhHHHHHHHHHh
Q 043637 629 -YMKELEDFVNRM--PFNP-TVPMLRKIFDKCRK 658 (693)
Q Consensus 629 -~~~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~ 658 (693)
..++|+.+++++ ...| ....|..+...+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999988 3333 34567666665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-11 Score=118.33 Aligned_cols=210 Identities=10% Similarity=0.033 Sum_probs=120.6
Q ss_pred HHHHHHHHhhcC--CCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHhhhC-CCCCHHHHHHHHHHhccc
Q 043637 428 RSARIWFYQMSQ--RRDKVSWNAVLTGYA-------RRGQS-------EEAMTSFSEMQWE-TRPSKFTFETLLAACANI 490 (693)
Q Consensus 428 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~~ 490 (693)
++|...+.+.+. ..+...|..++..+. +.|++ ++|..+|++.... .+.+...+..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556665555 235556666665554 24664 6777777776663 344555666666666667
Q ss_pred CChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH-hCCChHHHHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVV-CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC-HNERGREALEV 565 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~-~~g~~~~A~~~ 565 (693)
|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.. +.+...|...+.... ..|+.++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776663221 222 56666666666666666666666554 223334433332222 24666666666
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 566 FGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 566 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|++..+ ..|+ ...|..++..+.+.|++++|..+|+++.....+.| ....|..++..+.+.|+.++|..+++++
T Consensus 192 ~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 192 FELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666 3343 45566666666666666666666666664212343 2445666666666666666666666655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-11 Score=112.37 Aligned_cols=220 Identities=10% Similarity=-0.062 Sum_probs=169.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
+...+..+...+...|++++|...+.+.....+..++..+...|.. .+++++|++.|++....+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 82 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 82 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 3445566666777777777777777777765566677777777777 888888888888876654 5566777777
Q ss_pred Hhcc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh-
Q 043637 486 ACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCH- 555 (693)
Q Consensus 486 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~- 555 (693)
.+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++.. ..+...+..+...+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 7777 888888888888887764 56677777778887 888888888888766 3456677778888887
Q ss_pred ---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh--
Q 043637 556 ---NERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR-- 626 (693)
Q Consensus 556 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 626 (693)
.+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|.+
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCC
Confidence 889999999999988854 45677778888888 89999999999998852 2 26677788888888
Q ss_pred --cCChHHHHHHHHhCC
Q 043637 627 --YGYMKELEDFVNRMP 641 (693)
Q Consensus 627 --~g~~~~A~~~~~~~~ 641 (693)
.|+.++|...+++..
T Consensus 233 ~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGC 249 (273)
T ss_dssp SSSCCSTTHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHH
Confidence 899999999888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-11 Score=112.27 Aligned_cols=199 Identities=8% Similarity=-0.005 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..+..+...+...|++++|.+.++++....+.+...+..+..++...|++++|...++++.+.... +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 345555566666666666666666665554445556666666666666666666666666664332 4455666666666
Q ss_pred hh-CCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHH
Q 043637 524 KC-CCLEYAIRVFKESSS-----LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKL 596 (693)
Q Consensus 524 ~~-~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 596 (693)
.. |++++|...++++.. .+...+..+...+...|++++|...++++.+ ..|+ ...+..+...+...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHH
Confidence 66 777777666665432 2245677788888888888888888888887 3454 5777778888888888888
Q ss_pred HHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 597 ALQFFDSMRCKYGII-PQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 597 A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
|...++++.+. .+ .+...+..+...+...|+.++|..+++.+. ..|+.+
T Consensus 166 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 166 ADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 88888888753 23 456667777777888888888888888764 344433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=131.70 Aligned_cols=265 Identities=8% Similarity=-0.081 Sum_probs=151.8
Q ss_pred CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHhhcCC----C----C
Q 043637 375 DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN----IFVSNALLDMYRKCGNLRSARIWFYQMSQR----R----D 442 (693)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----~ 442 (693)
....+...-..+...|+++.|...++...+.+ +.+ ..++..+...+...|++++|...+.+.+.. + .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445555566777888888888888877763 222 245667777777888888887766665431 1 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhcccCC--------------------hHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACANISS--------------------LEQG 496 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~~~~~--------------------~~~a 496 (693)
..++..+...+...|++++|...+++..... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 3356666777777777777777777654322 111 3356666666777777 6777
Q ss_pred HHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCC----HHHHHHHHHHHHhCCChHHH
Q 043637 497 KQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLD----VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 497 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A 562 (693)
...+.+..+. +. ......+..+...|...|++++|...+++.. .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666665441 11 1112345555666666666666666665544 111 12555566666666666666
Q ss_pred HHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 043637 563 LEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 563 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 633 (693)
...+++..+. +-.+. ..++..+...+...|++++|...++++.+.....++ ...+..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665541 10000 234555556666666666666666665532111111 33455556666666666666
Q ss_pred HHHHHhC
Q 043637 634 EDFVNRM 640 (693)
Q Consensus 634 ~~~~~~~ 640 (693)
...+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-12 Score=129.97 Aligned_cols=230 Identities=10% Similarity=-0.037 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC----C--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh----C-CCcchhH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWE----T--RPSKFTFETLLAACANISSLEQGKQIHCFVIRN----C-YEINVVC 514 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 514 (693)
+..+...+...|++++|.+.+++.... + +.....+..+...+...|++++|...+++..+. + .......
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443221 1 112234444445555555555555555554432 1 1112334
Q ss_pred HHHHHHHHHhhCC-----------------HHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 515 RGALVEVYTKCCC-----------------LEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 515 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
+..+...|...|+ +++|...+++.. ......+..+...+...|++++|.+.+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4555555666666 666655555432 11123666677777778888888877777
Q ss_pred HHHCCCCC---C----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 043637 569 MKKEGIKP---D----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 569 m~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
..+. .| + ..++..+...+...|++++|...++++.+...-..+ ...+..+..+|.+.|++++|...+
T Consensus 249 al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 249 RLRI--AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHH--HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6652 22 1 125666777788888888888888777642111111 345667777788888888888887
Q ss_pred HhCCC----CCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 638 NRMPF----NPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 638 ~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
++... .++ ...+..+...+...|++++|...+++++++.+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76631 112 23566677777788888888888888877665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-12 Score=123.79 Aligned_cols=135 Identities=10% Similarity=-0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----h
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----L 614 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 614 (693)
..+..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..+.....++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 36777788888888888888888887652 11111 236777788899999999999999888653221222 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
..+..+...|...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++.|+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 567778888999999999999988764 1122 336677888999999999999999999998774
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-12 Score=127.39 Aligned_cols=292 Identities=13% Similarity=-0.003 Sum_probs=219.2
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHhcccchhhHHHHHHHHHHh----CCCC-chh
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID---QVTLGLILNVCAGLSEIKMGKEVHGFIHRN----DYSS-NIF 412 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 412 (693)
...+......+...|++++|...|++..+.+.... ...+..+...+...|+++.|...++..... +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34556677889999999999999999988742211 245677778888999999999999987642 2222 355
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQ--------------------SEEAMT 464 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 464 (693)
++..+...+...|++++|...+.+.+.. ++ ..++..+...+...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7788889999999999998888877652 22 3478888899999999 999999
Q ss_pred HHHHhhhC----C--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCC-c----chhHHHHHHHHHHhhCCHHHHHH
Q 043637 465 SFSEMQWE----T--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE-I----NVVCRGALVEVYTKCCCLEYAIR 533 (693)
Q Consensus 465 ~~~~~~~~----~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~ 533 (693)
.+++.... + +....++..+...+...|++++|...+++..+.... + ....+..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99886432 2 222356788888999999999999999998863211 1 23477888899999999999999
Q ss_pred HHhcCC-----CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 043637 534 VFKESS-----SLD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 534 ~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
.+++.. ..+ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998765 122 457888999999999999999999988762 11111 4577788899999999999999
Q ss_pred HHHHhHHhc---CCCC-ChhHHHHHHHHHHhcCChHH
Q 043637 600 FFDSMRCKY---GIIP-QLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 600 ~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~ 632 (693)
.+++..+.. +..+ ...++..+...+...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999986521 1111 13456667777777776643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-11 Score=115.98 Aligned_cols=216 Identities=9% Similarity=-0.034 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhc-------ccCCh-------HHHHHHHHHHHHh-CCCcchhHHHHHHHHHHh
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACA-------NISSL-------EQGKQIHCFVIRN-CYEINVVCRGALVEVYTK 524 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 524 (693)
++|...|++.....+.+...|..++..+. ..|+. ++|..++++.++. .+ -+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHh
Confidence 46666666665554555556665555543 24664 6777777777663 32 244566667777777
Q ss_pred hCCHHHHHHHHhcCC--CC-CHH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh-ccCcHHHHH
Q 043637 525 CCCLEYAIRVFKESS--SL-DVI-ICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACI-HEGNVKLAL 598 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~-~~g~~~~A~ 598 (693)
.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++..+. .|+ ...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777655 22 233 6777777777777777777777777763 332 334433332221 257777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--CHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF----NP--TVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
.+|+++.+. .+-++..|..++..+.+.|+.++|+.+|++... +| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777642 233456666777777777777777777776642 22 3446666666677777777777777777
Q ss_pred hhcCCCCC
Q 043637 673 NELNPWAP 680 (693)
Q Consensus 673 ~~~~p~~~ 680 (693)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 77777544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=125.88 Aligned_cols=209 Identities=9% Similarity=-0.108 Sum_probs=167.7
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSL-EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
+++++..+++.....+.+...+..+..++...|++ ++|...+++..+.... +...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777776655566788888889999999999 9999999998886544 567788888888888999999888887
Q ss_pred CC--CCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc--------CcHHHH
Q 043637 538 SS--SLDVIICNSMILGFCHN---------ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE--------GNVKLA 597 (693)
Q Consensus 538 ~~--~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~--------g~~~~A 597 (693)
.. .|+...+..+...+... |++++|++.+++..+ +.|+ ...|..+..+|... |++++|
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66 56677888888888888 899999999999888 5664 57788888888888 889999
Q ss_pred HHHHHHhHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 598 LQFFDSMRCKYGII---PQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 598 ~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+..++++.+. .+ .+...|..+..+|.+.|++++|+..|++.. .+.+...+..+...+...|++++|...++++
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999988752 22 367788888889999999999999988874 4556667888888888888888887766554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=124.98 Aligned_cols=264 Identities=9% Similarity=-0.065 Sum_probs=161.0
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhcccchhhHHHHHHHHHHh----CC-CCchhH
Q 043637 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQ----VTLGLILNVCAGLSEIKMGKEVHGFIHRN----DY-SSNIFV 413 (693)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 413 (693)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566778888888888888888775322 22 24555555666666666666666655432 10 112233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCHHHHHHHHHHh
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET------RPSKFTFETLLAAC 487 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~p~~~~~~~ll~~~ 487 (693)
+..+...|.. .|++++|.+.+++..... .....++..+...+
T Consensus 129 ~~~l~~~~~~--------------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKV--------------------------------MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHH--------------------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4444444444 444444444444432211 11223445555555
Q ss_pred cccCC-----------------hHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----
Q 043637 488 ANISS-----------------LEQGKQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESSS----- 540 (693)
Q Consensus 488 ~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 540 (693)
...|+ ++.|...+++..+. +. ......+..+...|...|++++|...+++...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55565555554431 11 11234556666677777777777777766541
Q ss_pred CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 541 LD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-------HITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 541 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.+ ...+..+...+...|++++|...+++..+. .|+ ..++..+...+...|++++|...++++.+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 226777888888889999998888887662 221 35677778888999999999999988865211
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-.++ ...+..+...|.+.|++++|...+++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1112 3467778888999999999999888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-11 Score=104.97 Aligned_cols=169 Identities=12% Similarity=0.004 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~ 587 (693)
...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3456667788889999999999999887 456778999999999999999999999999984 45 46788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
+...|++++|.+.++++.+ ..+.+...+..++..|.+.|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986 345567888899999999999999999999875 455677888999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchh
Q 043637 666 EWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 666 ~~~~~~~~~~~p~~~~~~~ 684 (693)
...++++++++|+++....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 164 LPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHcCCCchhhHh
Confidence 9999999999998776544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-09 Score=111.11 Aligned_cols=216 Identities=7% Similarity=-0.105 Sum_probs=151.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHH-HHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 043637 462 AMTSFSEMQWETRPSKFTFETLLAACANISSLEQGK-QIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS 540 (693)
Q Consensus 462 a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (693)
+..+|++.....+-....|...+.-+...|+.+.|. .++++.....+ .+...+-..+....+.|+++.|.++|+++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566655444445555655666566666766775 77777766433 2445555666666777777777777766541
Q ss_pred -------------C------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhcc-Cc
Q 043637 541 -------------L------------DVIICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGILLACIHE-GN 593 (693)
Q Consensus 541 -------------~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~ 593 (693)
| ...+|...+....+.|+.+.|..+|++..+. + .+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 2 1236888888888889999999999999885 2 11233444333333333 55
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhcCCccHHHHH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
.+.|.++|+...+. ++-++..+...++.....|+.+.|..+|++... .+ ....|..++..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999974 444566677888888889999999999998763 22 245788888888899999999999
Q ss_pred HHHHhhcCCCCCc
Q 043637 669 ARRLNELNPWAPF 681 (693)
Q Consensus 669 ~~~~~~~~p~~~~ 681 (693)
.+++.+..|+++.
T Consensus 564 ~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 564 EKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHSTTCCH
T ss_pred HHHHHHhCCCCcH
Confidence 9999999997653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-11 Score=117.87 Aligned_cols=265 Identities=9% Similarity=-0.088 Sum_probs=157.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHhcccchhhHHHHHHHHHHh----CCCC-chhHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDID----QVTLGLILNVCAGLSEIKMGKEVHGFIHRN----DYSS-NIFVS 414 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 414 (693)
+......+...|++++|...|+++.+.... + ...+..+...+...|+++.|...++...+. +..+ ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344556677888888888888888775321 2 234445555566666666666666554421 1111 12233
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhc
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACA 488 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~ 488 (693)
.. +...+...|++++|.+.+++..... .++ ..++..+...+.
T Consensus 87 ~~--------------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 87 GN--------------------------------LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HH--------------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH--------------------------------HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34 4444444555555555444432211 111 224444555555
Q ss_pred ccCC--------------------hHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---
Q 043637 489 NISS--------------------LEQGKQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESSS--- 540 (693)
Q Consensus 489 ~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 540 (693)
..|+ ++.|...+++.... +. ......+..+...+...|++++|...+++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555554331 11 11233556666677777777777777766541
Q ss_pred --CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 541 --LD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 541 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
++ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|...++++.+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 226777888888888999998888887652 11111 35677777888999999999999988865211
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+ ...+..+...|.+.|++++|...+++..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1112 3467778888999999999999888653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.3e-11 Score=118.22 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=164.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC--CC----CHHHHHHHHHHhcccCChHHHHHHHHHHHHhC--C----CcchhHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET--RP----SKFTFETLLAACANISSLEQGKQIHCFVIRNC--Y----EINVVCRG 516 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~--~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 516 (693)
....+...|++++|++.+++..... .+ ...++..+..++...|+++.|...+.+..+.. . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566777777777777764431 12 23466667777777777777777777766521 1 11234566
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC-----CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS-----SLD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFH 582 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 582 (693)
.+..+|...|++++|...+++.. .++ ..++..+...|...|++++|++.+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 77778888888888888877655 122 237888999999999999999999988772 23243 47788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHhHHHHHHH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYG---IIPQLEHYECMIKLYCRYGY---MKELEDFVNRMPFNPT-VPMLRKIFDK 655 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 655 (693)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ .++|+.++++....++ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888999999999999999999875221 11222335668888899999 8999999999864333 3367778899
Q ss_pred HHhcCCccHHHHHHHHHhhcCC
Q 043637 656 CRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p 677 (693)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=123.45 Aligned_cols=233 Identities=11% Similarity=0.019 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC-------C-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh------CC-Cc
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWE-------T-RPSKFTFETLLAACANISSLEQGKQIHCFVIRN------CY-EI 510 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 510 (693)
+..+...+...|++++|...++++... . +.....+..+...+...|++++|...++++.+. +. ..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444444444555555555555444331 1 222334445555555555555555555555442 11 12
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------C
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS-----------SLDVIICNSMILGFCHNERGREALEVFGLMKKE------G 573 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g 573 (693)
....+..+...|...|++++|...+++.. +.....+..+...+...|++++|.+.++++.+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556666666666666666665443 112346777888899999999999999988773 2
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKY------GIIPQ-L------EHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
..|+ ..++..+...+...|++++|...++++.+.. ...+. . ..+..+...+...+.+.+|...+++
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 2443 3577888899999999999999999987521 11111 1 1222233344455666666666666
Q ss_pred CCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 640 MPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 640 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
... +.....+..++..|...|++++|...+++++++.|+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 652 233457888999999999999999999999999885
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=110.77 Aligned_cols=206 Identities=7% Similarity=-0.077 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMI 550 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 550 (693)
+.+...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 445678888888999999999999999999987764566677778889999999999999998766 44566888899
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD-H-------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYEC 619 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~ 619 (693)
..+...|++++|+..+++..+ +.|+ . ..|..+...+...|++++|++.++++.+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 999999999999999999988 5665 3 3467777888889999999999998874 3454 566777
Q ss_pred HHHHHHhcCCh--HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 620 MIKLYCRYGYM--KELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 620 l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+|...|+. ++|..+ ...+...+.... ....+.+++|...++++++++|+++.....|+.+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88888766654 232221 122344443322 334567899999999999999999999888887653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-08 Score=102.84 Aligned_cols=226 Identities=5% Similarity=-0.103 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH-HHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh
Q 043637 359 EALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK-EVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM 437 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 437 (693)
.+..+|++.... .+-....|......+...|+.+.|. .+++..... ++.+...+...+....+.|+++.|..++...
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666554 2234555555555566667777775 787777653 3556666677777777888888887777666
Q ss_pred cCC------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCHHHHHHHHHHhcc-cC
Q 043637 438 SQR------------RD------------KVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETLLAACAN-IS 491 (693)
Q Consensus 438 ~~~------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~-~~ 491 (693)
+.. |+ ...|...+....+.|+.+.|..+|.+.... +.+....|......-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 542 21 225666777777778888888888887766 32223333322222222 34
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--C----CHHHHHHHHHHHHhCCChHHHHHH
Q 043637 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS--L----DVIICNSMILGFCHNERGREALEV 565 (693)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~ 565 (693)
+.+.|..+|+...+.-. -+...+...++.....|+.+.|..+|++... + ....|..++.--.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57888888888777522 2455566777777777888888888887662 2 234677777777788888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh
Q 043637 566 FGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
.+++.+ ..|+......++.-|.
T Consensus 564 ~~R~~~--~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 564 EKRFFE--KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHH--HSTTCCHHHHHHHHTC
T ss_pred HHHHHH--hCCCCcHHHHHHHHhc
Confidence 888887 4566555555555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=101.18 Aligned_cols=161 Identities=8% Similarity=0.006 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...|.+.|++++|++.|++..+..+-+...+..+..++...|+++.|...+........
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--------------- 70 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------------- 70 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------------
Confidence 34455555555555555555555555444444444555555555555555555555554444332
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+...+..+...+...++++.|.+.+.+..+ +.|+ ...+..+..++.+.|++++|++.++
T Consensus 71 -----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 71 -----------------TSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp -----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 2333344444444444555555555555444 2332 3444444455555555555555555
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++.+. .+.+...+..++.+|.+.|++++|+..|++.
T Consensus 132 ~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 132 KTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55431 1223444445555555555555555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-11 Score=120.44 Aligned_cols=208 Identities=11% Similarity=-0.043 Sum_probs=157.6
Q ss_pred HHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 043637 428 RSARIWFYQMSQR--RDKVSWNAVLTGYARRGQS-EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVI 504 (693)
Q Consensus 428 ~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 504 (693)
+++...+.+.... .+...+..+...+...|++ ++|++.|++.....+.+...+..+..++...|++++|...+++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3343444443332 2455666677777777777 777777777766656667777777777777888888888877777
Q ss_pred HhCCCcchhHHHHHHHHHHhh---------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC--------CChHHHHH
Q 043637 505 RNCYEINVVCRGALVEVYTKC---------CCLEYAIRVFKESS---SLDVIICNSMILGFCHN--------ERGREALE 564 (693)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------g~~~~A~~ 564 (693)
+.. |+...+..+..+|... |++++|...+++.. +.+...|..+..+|... |++++|++
T Consensus 165 ~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 165 THC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp TTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 754 4456777777777777 88888888887765 55677888888888888 88999999
Q ss_pred HHHHHHHCCCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 565 VFGLMKKEGIKP----DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 565 ~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.|++..+ +.| +...|..+..+|...|++++|.+.++++.+. .+.+...+..+..++...|+.++|+..+.++
T Consensus 243 ~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 566 5678888889999999999999999999852 3345667888889999999999999887776
Q ss_pred C
Q 043637 641 P 641 (693)
Q Consensus 641 ~ 641 (693)
.
T Consensus 319 ~ 319 (474)
T 4abn_A 319 K 319 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7e-09 Score=103.48 Aligned_cols=228 Identities=10% Similarity=0.007 Sum_probs=164.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhcccCChHHHHHHHHHHHHhC--C---C-cchhHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACANISSLEQGKQIHCFVIRNC--Y---E-INVVCRG 516 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 516 (693)
....+...|++++|+..|++..... .++ ..++..+..++...|+++.|...+.+..+.. . . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444567788888888887765432 222 3466677777888888888888887776621 1 1 1245667
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCC-ChHHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESSS-----LD----VIICNSMILGFCHNERGREALEVFGLMKKEG---IKP-DHITFHG 583 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~~~~~ 583 (693)
.+..+|...|++++|...+++... ++ ..++..+..++...|++++|++.+++..+.. ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 778888888888888888876541 22 2467788899999999999999999887710 123 3567888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYECMIKLYCRYGY---MKELEDFVNRMPFNPT-VPMLRKIFDKC 656 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~ 656 (693)
+...+.+.|++++|...+++..+.....++ ...+..+...|...|+ .++|+..+++....++ ...+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998863222222 3345666677778888 8999999998654333 33666788899
Q ss_pred HhcCCccHHHHHHHHHhhcC
Q 043637 657 RKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~ 676 (693)
...|++++|...++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-09 Score=109.84 Aligned_cols=205 Identities=7% Similarity=-0.018 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMY 421 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (693)
.++..+...|...|++++|+..+++..+.-...+ +. .+....+++.+..+|
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~--------------~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE---------------AY--------------NIRLLQCHSLFATNF 194 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---------------TT--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---------------cc--------------hHHHHHHHHHHHHHH
Confidence 4677778888888888888888877654211000 00 000122344555556
Q ss_pred HHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-CCCHHHHHHHHHHh
Q 043637 422 RKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQW-----ET-RPSKFTFETLLAAC 487 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~p~~~~~~~ll~~~ 487 (693)
...|++++|+..+.+.+.- ++ ..++..+...|...|++++|++.+++... .. +....++..+..++
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 6666666665555554431 11 12455566666666666666666666543 22 22234455555555
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHhCCC---hHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL-DVIICNSMILGFCHNER---GREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~ 563 (693)
...|++++|...+++..+.... ...+ ....+..+...+...|+ +++|+
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQK----------------------------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5666666666555554431100 0000 01123445555666666 55555
Q ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 564 EVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.++++. +..|+. ..+..+...|...|++++|...+++..+
T Consensus 327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555543 233332 4555566777777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=123.14 Aligned_cols=163 Identities=10% Similarity=-0.035 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 587 (693)
...++.+..+|.+.|++++|++.|++.. +.+...|+.+..+|.+.|++++|++.|++..+ +.|+ ...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4556666677777777777777777655 44567888888889999999999999999888 6775 5788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
+.+.|++++|++.++++.+. .+-+...|..+..+|.+.|++++|+..+++.. .+.+...+..++..+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999988752 23356788889999999999999999998875 455677888899999999999999
Q ss_pred HHHHHHHhhcCCC
Q 043637 666 EWAARRLNELNPW 678 (693)
Q Consensus 666 ~~~~~~~~~~~p~ 678 (693)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=115.38 Aligned_cols=152 Identities=12% Similarity=-0.023 Sum_probs=95.4
Q ss_pred CCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHh-------CCCCCchhhhHHHHHHhccCC
Q 043637 20 PTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTF-------YPTPPVFLLNRAIECYGKCGN 92 (693)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 92 (693)
+.+..+......+......|.+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|+
T Consensus 5 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 84 (311)
T 3nf1_A 5 HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84 (311)
T ss_dssp CCCCGGGGGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 3344444455555556666777788999999999999999999999998874 233345667778888888888
Q ss_pred hhhHHHhhccCCC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHhhhC------CCCC-CHhhHHHHHHHhh
Q 043637 93 LDDARGLFDEMPE-------R----DGGSWNAMLGAYTQNGFPGRTLELFLDMNHS------GVSA-NQITYANVLRSSA 154 (693)
Q Consensus 93 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~ 154 (693)
+++|...|++..+ + ...+|..+...+...|++++|+..|++..+. +-.| ....+..+...+.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8888888875431 1 1234555666666666666666666665442 1111 1223444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 043637 155 EELELGVSKQLHGLIVK 171 (693)
Q Consensus 155 ~~~~~~~a~~~~~~~~~ 171 (693)
..|++++|...++.+.+
T Consensus 165 ~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-09 Score=100.47 Aligned_cols=243 Identities=10% Similarity=-0.017 Sum_probs=160.3
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
..-.|.+..++..............-.-+.++|...|++... ....|....+..+...+. .+ +...+
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~~-~~----a~~~l 89 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFLD-TK----NIEEL 89 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHHT-TT----CCHHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHhc-cc----HHHHH
Confidence 344577777766444433322222333345677777776531 111455444444444332 22 56666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS-----LDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
+++...+ .++...+..+..++...|++++|++++.+... .+...+...+..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666554 33444455777888888999999999887642 3556788888999999999999999999988 67
Q ss_pred C-----ChHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----
Q 043637 576 P-----DHITFHGILLA--CIHEG--NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF---- 642 (693)
Q Consensus 576 p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 642 (693)
| +..+...|..+ ....| ++.+|..+|+++.++ .|+...-..+..++.+.|++++|...++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 35555666655 44344 899999999998642 45523333444489999999999999986532
Q ss_pred --------CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 643 --------NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 643 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
+.++.++..++-.....|+ +|.+.++++.+.+|++|....
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 3345566566666666675 889999999999999886543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-10 Score=122.29 Aligned_cols=147 Identities=10% Similarity=0.009 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...|+.+...+...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.++++.+. .+-+...|..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3567899999999999999999999999999 6786 588999999999999999999999999852 2335788999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+|.+.|++++|++.+++.. .+.+...+..++..+...|++++|+..++++++++|+++.++..|+.+|.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 9999999999999999999885 46678899999999999999999999999999999999999999998874
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-08 Score=100.30 Aligned_cols=221 Identities=8% Similarity=0.002 Sum_probs=165.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CC-----CHHHHH
Q 043637 417 LLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RP-----SKFTFE 481 (693)
Q Consensus 417 l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p-----~~~~~~ 481 (693)
....+...|++++|...+.+.... ++ ..++..+...|...|++++|+..+++..... .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 445567889999998888887653 22 3467788889999999999999998864322 11 245777
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--------CCHHHHHH
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRN----CYE-INVVCRGALVEVYTKCCCLEYAIRVFKESSS--------LDVIICNS 548 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ 548 (693)
.+..++...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++... ....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999988762 111 2245677888999999999999999987652 23457888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC---CCC-hHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGI---KPD-HITFHGILLACIHEGN---VKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
+...+.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|+..+++.. ..+.....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHH
Confidence 99999999999999999999887321 222 2445566677778888 777887777632 2222345677889
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 043637 622 KLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~ 640 (693)
..|.+.|++++|...+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-09 Score=93.27 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+..+...+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 4445555666666666666666655444445555666666666666666666666666554321 233344444444444
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...++++. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444332 233444455555555555555555555555552 23 2344555555555555555555555
Q ss_pred HHhH
Q 043637 602 DSMR 605 (693)
Q Consensus 602 ~~~~ 605 (693)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=100.58 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=97.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---C-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---S-LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGIL 585 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 585 (693)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|++.+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34556666666777777777777776654 3 5666666667777777777777777777776 45543 5566666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHhHHHHHH
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQL-------EHYECMIKLYCRYGYMKELEDFVNRMP-FNPT---VPMLRKIFD 654 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~ 654 (693)
.++...|++++|+..+++..+. .+.+. ..|..+...+.+.|++++|+..+++.. ..|+ ...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 7777777777777777777642 22223 345566666666777777777776654 2332 345555555
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+... +...++++..+.+.++
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~ 182 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNK 182 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCH
T ss_pred HHHHH-----HHHHHHHHHhcccCCH
Confidence 55433 3444555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=98.62 Aligned_cols=139 Identities=12% Similarity=-0.047 Sum_probs=106.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
|...+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.++++.+ -.+-++..|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 33445566778888888887766 4554 35566777888899999999999988875 2334577888888899999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHH-HHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEW-AARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|++++|+..|++.. .+.++..+..++..+...|+.++|.. .++++++++|+++.++...+.++.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999888775 45567788889999999998877655 469999999999999888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-08 Score=95.17 Aligned_cols=266 Identities=10% Similarity=-0.040 Sum_probs=136.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhcccchhhHHHHHHHHHHhCC-CCchhHHHHHHHHH
Q 043637 347 MLAGYTRSLLWKEALDFVFLMRKTTKDIDQV----TLGLILNVCAGLSEIKMGKEVHGFIHRNDY-SSNIFVSNALLDMY 421 (693)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 421 (693)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++...+..- ..+...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------- 91 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-------- 91 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH--------
Confidence 3445566788888888888776643222221 222333344455555555555554432110 000000
Q ss_pred HHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC----C-C--CC-HHHHHHHHHHhcccCCh
Q 043637 422 RKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE----T-R--PS-KFTFETLLAACANISSL 493 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~--p~-~~~~~~ll~~~~~~~~~ 493 (693)
...++..+...+...|++++|.+.+++.... + . |. ...+..+...+...|++
T Consensus 92 --------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 92 --------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred --------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 0112333444455555555555555554221 1 1 21 22344455555666666
Q ss_pred HHHHHHHHHHHHhCCCc----chhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCC-HHHHH-----HHHHHHHhCCCh
Q 043637 494 EQGKQIHCFVIRNCYEI----NVVCRGALVEVYTKCCCLEYAIRVFKESS----SLD-VIICN-----SMILGFCHNERG 559 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~-~~~~~-----~l~~~~~~~g~~ 559 (693)
++|...+++........ ....+..+...+...|++++|...+++.. .++ ...+. ..+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 66666666655522211 12344555566666666666666665432 111 11111 222335677777
Q ss_pred HHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCCh-hHHHHHHHHHHhcCChHH
Q 043637 560 REALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIPQL-EHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~-~~~~~l~~~~~~~g~~~~ 632 (693)
++|...+++.......+. ...+..+...+...|++++|...++++.... +..++. ..+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 777777777665321111 1234556677777788888877777765321 111122 245556677777888888
Q ss_pred HHHHHHhC
Q 043637 633 LEDFVNRM 640 (693)
Q Consensus 633 A~~~~~~~ 640 (693)
|...+++.
T Consensus 312 A~~~l~~a 319 (373)
T 1hz4_A 312 AQRVLLDA 319 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-08 Score=95.10 Aligned_cols=263 Identities=8% Similarity=-0.132 Sum_probs=160.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C--Cc----ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCH----hhH
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE--R--NV----ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD-IDQ----VTL 379 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~ 379 (693)
.......+...|++++|...+++... | +. ..++.+...+...|++++|...+++....... ++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455667789999999999877543 2 21 14566677888899999999999987653211 111 112
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHh----CCC--CchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHH
Q 043637 380 GLILNVCAGLSEIKMGKEVHGFIHRN----DYS--SNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGY 453 (693)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 453 (693)
..+...+...|+++.|...++...+. +.+ |. ....+..+...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~ 145 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-------------------------------HEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-------------------------------HHHHHHHHHHHH
Confidence 33333444555555555555444321 110 10 112334455555
Q ss_pred HhcCChHHHHHHHHHhhhCC----CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHH----HHHHHH
Q 043637 454 ARRGQSEEAMTSFSEMQWET----RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN--VVCRG----ALVEVY 522 (693)
Q Consensus 454 ~~~~~~~~a~~~~~~~~~~~----~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~ 522 (693)
...|++++|...+++..... .+ ...++..+...+...|++++|...+++.......++ ..... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 66666666666666543221 11 234555666667777777777777777665321111 11111 233446
Q ss_pred HhhCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHhc
Q 043637 523 TKCCCLEYAIRVFKESSSLD-------VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPDH-ITFHGILLACIH 590 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~ 590 (693)
...|++++|...+++...++ ...+..+...+...|++++|...+++..+. |..++. ..+..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 78889999988888776321 224667788899999999999999887652 222222 356666788899
Q ss_pred cCcHHHHHHHHHHhHH
Q 043637 591 EGNVKLALQFFDSMRC 606 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~ 606 (693)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999998874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-09 Score=101.50 Aligned_cols=209 Identities=9% Similarity=-0.079 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC--CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWE----TRP--SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
..|......|...|++++|.+.|.+.... +.| ...+|..+..+|...|++++|...+++..+...
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--------- 108 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--------- 108 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------
Confidence 34555555666666666666666654221 111 123455555555555555555555554443110
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHh
Q 043637 518 LVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-ERGREALEVFGLMKKEGIKPD-------HITFHGILLACI 589 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~ 589 (693)
..|+... -..+++.+...|... |++++|+..+++..+ +.|+ ..++..+...+.
T Consensus 109 ------~~g~~~~-----------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 109 ------HRGQFRR-----------GANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp ------HTTCHHH-----------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HcCCHHH-----------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHH
Confidence 0010000 022455566666664 666666666666655 2221 234556666667
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH------hHHHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQL-----EHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP------MLRKIFDKCR 657 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~------~~~~l~~~~~ 657 (693)
..|++++|+..++++.+...-.+.. ..+..++.++...|++++|+..+++.. ..|+.. .+..++..+.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777777666421111111 134556666666777777777776654 122211 2333444443
Q ss_pred --hcCCccHHHHHHHHHhhcCCCCC
Q 043637 658 --KNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 658 --~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+++++|...++++.+++|+..
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cCCHHHHHHHHHHhccCCccHHHHH
Confidence 23456666666666666666443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-09 Score=100.77 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHh------CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----------
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRN------CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS----------- 539 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------- 539 (693)
.++..+...+...|++++|...++++.+. +- ......+..+..+|...|++++|...+++..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554442 11 1123445555556666666666666555433
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKE------GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKY---- 608 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 608 (693)
+.....+..+...+...|++++|...+++..+. +-.|+ ..++..+...+...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 112446778888888999999999999888773 11443 4678888899999999999999999987521
Q ss_pred --CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCCC-CC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 609 --GIIP-QLEHYECMIKLYCRYG------YMKELEDFVNRMPF-NP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 609 --~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
...+ ....+..+...+...+ .+.++...++.... .| ....+..++..|...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1122 2333444444443322 34445555555542 22 23467788999999999999999999998753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-09 Score=97.53 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC--CC-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS--SL-D---VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGI 584 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l 584 (693)
+-.+...+.+.|++++|...|+++. .| + ...+..+..++...|++++|+..|++..+ ..|+ ...+..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHHHHH
Confidence 3334444555555555555555544 12 2 44566666777777777777777777776 3342 2345555
Q ss_pred HHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChhH---------------HHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIH--------EGNVKLALQFFDSMRCKYGIIPQLEH---------------YECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..++.. .|++++|+..|+++.+...-.+.... +..+...|.+.|++++|+..|+++.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566666 77777777777777653222222111 1556788899999999999998874
Q ss_pred -CCCC----HHhHHHHHHHHHhc----------CCccHHHHHHHHHhhcCCCCCcc
Q 043637 642 -FNPT----VPMLRKIFDKCRKN----------GYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 642 -~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
..|+ ...+..++.+|... |++++|...++++++..|+++.+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 2222 34666777777755 88899999999999999988643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-09 Score=87.96 Aligned_cols=115 Identities=8% Similarity=-0.088 Sum_probs=98.6
Q ss_pred CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHH
Q 043637 574 IKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLR 650 (693)
Q Consensus 574 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 650 (693)
+.|+. ..+......|.+.|++++|++.|+++.+ -.+.++..|..+..+|.+.|++++|+..+++.. .+.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 66754 6777888899999999999999999885 334567888889999999999999999998875 466778899
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.++.++...|++++|...++++++++|+++.+...|++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999998888753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-09 Score=85.47 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.|..+...+...|++++|..+++++.+. .| +...+..+...+...|++++|...++++... .+.+...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 4667778888888899999999888874 34 4567777888888889999999999988752 34456677888888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+.+.|++++|...++++. .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999988774 3456677888888899999999999999999998885
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-09 Score=94.23 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
...+..++.+.|++++|+..|++..+ +.|+ ...+..+..++...|++++|+..++++.+ -.+.+...+..+...|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 34488889999999999999999999 5674 57888888999999999999999999985 2344577888888888
Q ss_pred HhcCC--hHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 625 CRYGY--MKELEDFVNRMPFNPTVP--MLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 625 ~~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
...|+ .+.+...+++.. .+++. .+.....++...|++++|+..++++++++|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 76654 445667777665 33333 334456667778999999999999999999643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.2e-09 Score=109.18 Aligned_cols=158 Identities=6% Similarity=-0.132 Sum_probs=102.0
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...+++.. +.+...|..+...+...|++++|.+.+++..+ ..|+ ...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666554 33456677777777777777777777777777 4554 466777777777778888888877
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc---CCccHHHHHHHHHhhcC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN---GYATLGEWAARRLNELN 676 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 676 (693)
++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777642 23346667777777777888888877777664 344566677777777777 77888888888888888
Q ss_pred CCCCcchhhhh
Q 043637 677 PWAPFQFKITT 687 (693)
Q Consensus 677 p~~~~~~~~l~ 687 (693)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 77766665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-08 Score=91.31 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
...|......|...|++++|...+.+.+.- .+ ..+|+.+...|.+.|++++|+..+++.....
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------- 107 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--------- 107 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence 346777888899999999999888877652 12 4578899999999999999999998864321
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh-CCHHHHHHHHhcCCC-----CC----HHHHHHHHHH
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC-CCLEYAIRVFKESSS-----LD----VIICNSMILG 552 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 552 (693)
...|+...+ ..++..+..+|... |++++|+..+++... .+ ..+++.+...
T Consensus 108 -----~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 108 -----THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp -----HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 111222111 11233344444443 555555555544330 01 2457778888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCh--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh------HHH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDH--------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE------HYE 618 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------~~~ 618 (693)
+...|++++|+..|++..+. .|+. ..|..+..++...|++++|...+++..+ +.|+.. .+.
T Consensus 168 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKS--SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLK 242 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH--HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHH
Confidence 99999999999999999883 4432 1466777888899999999999998863 344321 244
Q ss_pred HHHHHHH--hcCChHHHHHHHHhCC
Q 043637 619 CMIKLYC--RYGYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~--~~g~~~~A~~~~~~~~ 641 (693)
.++..|. ..+++++|+..++++.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4555554 4678999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-07 Score=88.46 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=118.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 462 AMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 462 a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
|+..|++....+.++..++..+..++...|++++|.+++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55566665554444455555666666667777777777766655443 2255666667777777777777777777665
Q ss_pred -CC-----CHHHHHHHHHH--HHh--CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 540 -SL-----DVIICNSMILG--FCH--NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 540 -~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.| +-.+...++.+ ... .++.++|..+|+++.+ -.|+..+-..++.++.+.|++++|.+.++.+.+...
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 13344444444 222 3489999999999877 356644444455588999999999999987764210
Q ss_pred --------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhH
Q 043637 610 --------IIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPML 649 (693)
Q Consensus 610 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 649 (693)
-+.++.++..+|......|+ +|.+++.++. ..|+.|..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13456677666666666776 7888888875 45665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=115.84 Aligned_cols=196 Identities=11% Similarity=-0.048 Sum_probs=157.9
Q ss_pred cccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 488 ANISSLEQGKQIHCFVI--------RNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
...|++++|.+.+++.. +.. ..+...+..+..+|...|++++|...+++.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 322 2356778888999999999999999999877 66788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|++.|++..+ +.|+ ...+..+..++.+.|++++ ++.++++.+ -.+.+...+..+..+|.+.|++++|+.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999 6775 5788889999999999999 999999985 234457788999999999999999999
Q ss_pred HHHhCC-CCCC-HHhHHHHHHHHHhcCC-----ccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 636 FVNRMP-FNPT-VPMLRKIFDKCRKNGY-----ATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 636 ~~~~~~-~~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
.+++.. ..|+ ...+..+..++...|+ .+...++.+.+.++.|+++.....-+.+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~l 616 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALV 616 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 999986 3444 5577777777766665 4667777777777888777765544433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-07 Score=85.95 Aligned_cols=229 Identities=7% Similarity=-0.033 Sum_probs=174.8
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhh---CC
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS--SLEQGKQIHCFVIRNCYEINVVCRGALVEVY----TKC---CC 527 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 527 (693)
...++|++.++.+....+-....++.--.++...+ +++++...++.+...+++ +...++.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 33467888888877776666677777777777777 888888888888886655 444454444444 444 67
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc------HH
Q 043637 528 LEYAIRVFKESS---SLDVIICNSMILGFCHNERGR--EALEVFGLMKKEGIKP-DHITFHGILLACIHEGN------VK 595 (693)
Q Consensus 528 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~------~~ 595 (693)
+++++.+++++. +.+..+|+.-...+.+.|+++ ++++.++++.+ ..| |...|+.-...+...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888876 667778888888888888888 99999999999 456 56778777777777776 89
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE-LEDFVNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
++++.+++++. -.+-|...|+.+...+.+.|+..+ +..+.++... ..++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999985 345567778888888888888555 5567776642 446678888999999999999999999
Q ss_pred HHHhh-cCCCCCcchhhhhhcc
Q 043637 670 RRLNE-LNPWAPFQFKITTNRF 690 (693)
Q Consensus 670 ~~~~~-~~p~~~~~~~~l~~~y 690 (693)
+.+.+ .+|-....+...++..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHhccChHHHHHHHHHHhhc
Confidence 99997 8998877777665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=91.23 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhcc----------CcHHHHHHHHHHhHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHE----------GNVKLALQFFDSMRC 606 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 606 (693)
..+...+...|++++|+..|+++.+ ..|+ ...+..+..+|... |++++|...++++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 3445556666666666666666655 2343 13444444555544 566666666666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=108.00 Aligned_cols=181 Identities=9% Similarity=-0.075 Sum_probs=152.0
Q ss_pred HhcCChHHHHHHHHHhh--------hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 454 ARRGQSEEAMTSFSEMQ--------WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 454 ~~~~~~~~a~~~~~~~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
...|++++|++.+++.. ...+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 77899999999999987 444666778889999999999999999999999986544 677888899999999
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...|++.. +.+...|..+..++.+.|++++ ++.|++..+ +.|+ ...|..+..++.+.|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999876 5577889999999999999999 999999999 5675 578889999999999999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------hHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIPQ-LEHYECMIKLYCRYGY--------MKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 641 (693)
+++. ...|+ ...+..+..++...|+ +++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9986 34555 5667778888876554 777777777775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-08 Score=87.62 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCC-H---HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-FNPT-V---PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+...|.+.|++++|+..|+++. ..|+ + ..+..++.++.+.|+.++|...++.+....|++...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 46678899999999999999885 2333 2 367788899999999999999999999999976543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-08 Score=78.76 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
|..+...+...|++++|..+++++....+.+...+..+...+...|+++.|...++++.+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------ 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------ 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------------------
Confidence 44445555555555555555555544333344444444444444555555555544444322
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 526 CCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
+.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++++
T Consensus 66 --------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 66 --------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp --------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 234455666777777778888888888877773 34 4566777777888888888888888877
Q ss_pred HH
Q 043637 605 RC 606 (693)
Q Consensus 605 ~~ 606 (693)
.+
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 64
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-08 Score=86.96 Aligned_cols=134 Identities=9% Similarity=-0.066 Sum_probs=91.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE 591 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 591 (693)
..+..+|.+.|++++|...+++.. +.+...|..+...+...|++++|+..|++..+ +.|+ ...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 346777778888888888887765 55677888888888889999999999999888 5675 57777777777666
Q ss_pred Cc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHH
Q 043637 592 GN--VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFD 654 (693)
Q Consensus 592 g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 654 (693)
|+ .+.+...++... ...|....+.....++...|++++|+..|++.. ..|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54 334555554443 222222234445667777889999999988775 5677665554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-08 Score=84.62 Aligned_cols=156 Identities=12% Similarity=-0.076 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-Hhc
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA-CIH 590 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 590 (693)
...+...+...|++++|...+++.. +.+...+..+...+...|++++|+..+++..+ ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 4455667778888888888888877 55667888888888888999999988888776 44543322222211 122
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHhHHHHHHHHHhcCCccHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT---VPMLRKIFDKCRKNGYATLGE 666 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~ 666 (693)
.+....|+..+++..+ -.+.++..+..+..++.+.|++++|+..|+++. ..|+ ...+..++..+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223346778888774 223357778888888999999999998888764 2332 457778888888889999999
Q ss_pred HHHHHHhh
Q 043637 667 WAARRLNE 674 (693)
Q Consensus 667 ~~~~~~~~ 674 (693)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=92.70 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.++..+...|...|++++|...++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666677777777777777777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-08 Score=90.93 Aligned_cols=153 Identities=8% Similarity=-0.094 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccC
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEG 592 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g 592 (693)
.+...+...|++++|...+++.. +.+...+..+...+...|++++|...++++.. ..|+........ ..+...+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHHHhhc
Confidence 33444444444444444444433 23344444455555555555555555555444 234332211111 2233444
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHhHHHHHHHHHhcCCccHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPT--VPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
+.++|...+++..+ ..+.+...+..+...|...|++++|+..++++. .+.+ ...+..++..+...|+.++|...
T Consensus 200 ~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 200 ADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp TSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44445555555443 122334444555555555555555555555443 1111 33455555555555555555555
Q ss_pred HHHHh
Q 043637 669 ARRLN 673 (693)
Q Consensus 669 ~~~~~ 673 (693)
+++.+
T Consensus 278 ~r~al 282 (287)
T 3qou_A 278 YRRQL 282 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-08 Score=93.13 Aligned_cols=155 Identities=8% Similarity=-0.035 Sum_probs=89.5
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCC-----cchhHHHHHHHHHHhhCCHHHHHHHHhcCC-------CCC--HHHHHHH
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYE-----INVVCRGALVEVYTKCCCLEYAIRVFKESS-------SLD--VIICNSM 549 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~--~~~~~~l 549 (693)
...|...|++++|...+.+..+.... .....+..+..+|...|++++|+..+++.. .+. ..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566677777777777766652111 113455666666777777766666665543 111 2355666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-------HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYE 618 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 618 (693)
...|.. |++++|++.+++..+ +.|+ ..++..+...+...|++++|+..++++.+...-.++ ...+.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 666666 777777777776655 2221 245566666777777777777777766542111111 12344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.++.++...|++++|+..|++..
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555666677777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=85.26 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=91.7
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSL---DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
..++...|++++|+..++...+. +...+..+...|...|++++|++.|++..+ +.|+ ..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34455566677777777766532 233555677788888888888888888887 5664 56777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH-HHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF-VNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
++|+..|+++.+. .+-++..+..+...|.+.|+.++|... +++.. .+.++..+......+...|
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888888742 233466777788888888887765544 45543 3445555655555555555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=85.01 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEG 592 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 592 (693)
.+..+...+...|++++|...+++...++...|..+...+...|++++|++.+++..+ +.| +...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3456677888899999999999999888888999999999999999999999999888 455 4577888889999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 593 NVKLALQFFDSMRCKYGIIPQL----------------EHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
++++|++.++++.+. .+.+. ..+..+..+|.+.|++++|...+++..
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999998852 22222 667788888888888888888888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.3e-07 Score=86.20 Aligned_cols=163 Identities=10% Similarity=-0.038 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHH-HHHH
Q 043637 475 PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICN-SMIL 551 (693)
Q Consensus 475 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~-~l~~ 551 (693)
.+...+..+...+...|++++|...++++.+..+. +...+..+..++.+.|++++|...++++. .|+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34455566667777788888888888888776554 56677788888999999999999999887 35544332 2333
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 043637 552 GFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM 630 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 630 (693)
.+...++.+.|...+++..+ ..|+ ...+..+...+...|++++|...++++.+...-..+...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 46677888889999999988 5675 57888888999999999999999999986422222367789999999999999
Q ss_pred HHHHHHHHhC
Q 043637 631 KELEDFVNRM 640 (693)
Q Consensus 631 ~~A~~~~~~~ 640 (693)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-05 Score=80.83 Aligned_cols=203 Identities=10% Similarity=-0.091 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHH-HHHHhcC
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYA-IRVFKES 538 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 538 (693)
+.+..+|+++....+.....|...+.-+...|+.+.|..++++.... + .+...+. .|....+.++. ..+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 45667888877665555677777777778889999999999999988 2 2332222 22221111111 1112111
Q ss_pred C------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-cCcHHHHHHHHHHhH
Q 043637 539 S------------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH-EGNVKLALQFFDSMR 605 (693)
Q Consensus 539 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 605 (693)
. .....+|...+..+.+.++.+.|..+|++. .. -.++...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 112246777777777888899999999999 31 11233444432322222 336999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+.++ -++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7533 334556667888889999999999999984 3678888888888889999999999998886
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=83.95 Aligned_cols=174 Identities=5% Similarity=-0.176 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNE----RGREALEVFGL 568 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 568 (693)
.+|.+.|++..+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|++.|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677888888764 66778888899999999999999999877 5677788888888887 6 89999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHHHHHH
Q 043637 569 MKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQ---LEHYECMIKLYCR----YGYMKELEDFV 637 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 637 (693)
..+.| +...+..|...|.. .+++++|.+.+++..+ ..|+ +..+..|...|.. .++.++|+.+|
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98855 56778888888887 8899999999999874 2332 6778889999988 88999999999
Q ss_pred HhCCCC-CCHHhHHHHHHHHHhc-C-----CccHHHHHHHHHhhcCC
Q 043637 638 NRMPFN-PTVPMLRKIFDKCRKN-G-----YATLGEWAARRLNELNP 677 (693)
Q Consensus 638 ~~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 677 (693)
++.... +++..+..+...|... | +.++|...++++.+..+
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988543 6667777788887663 4 89999999999998865
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.3e-08 Score=80.74 Aligned_cols=105 Identities=8% Similarity=-0.096 Sum_probs=81.7
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHH
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLR 650 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 650 (693)
+.|+ ...+..+...+.+.|++++|+..|+++.. -.+.++..|..+..+|.+.|++++|+..|++.. .+.++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4554 35677777888888888888888888875 234457778888888888888888888888774 455667788
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.++.++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-07 Score=80.98 Aligned_cols=154 Identities=9% Similarity=-0.031 Sum_probs=99.3
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHH-HHhCCChH
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILG-FCHNERGR 560 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~~ 560 (693)
...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++.. .|+...+..+... +...++..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccc
Confidence 33444555555555555554443222 44556666667777777777777777766 2343333222211 12223334
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.|+..+++..+ ..|+ ...+..+..++...|++++|...++++.+...-..+...+..++.+|...|+.++|...+++
T Consensus 92 ~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 92 PELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 57888888888 5675 57788888999999999999999999874211112355788889999999999999988875
Q ss_pred C
Q 043637 640 M 640 (693)
Q Consensus 640 ~ 640 (693)
.
T Consensus 170 a 170 (176)
T 2r5s_A 170 Q 170 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-07 Score=80.66 Aligned_cols=179 Identities=5% Similarity=-0.118 Sum_probs=142.0
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC----CHHHHHHHH
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC----CLEYAIRVF 535 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 535 (693)
.+|++.|++....+ +...+..+...+...+++++|...|++..+.| ++..+..|...|.. + ++++|...|
T Consensus 3 ~eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35777888877654 55677778888888999999999999998876 45667778888887 6 899999999
Q ss_pred hcCC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhc----cCcHHHHHHHHHH
Q 043637 536 KESS-SLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPD---HITFHGILLACIH----EGNVKLALQFFDS 603 (693)
Q Consensus 536 ~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 603 (693)
++.. ..++..+..|...|.. .+++++|++.|++..+.| |+ ...+..|...|.. .+++++|...+++
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9877 6677788888888887 889999999999999854 42 6778888888888 8899999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhc-C-----ChHHHHHHHHhCCCCCCHHhH
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRY-G-----YMKELEDFVNRMPFNPTVPML 649 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~~~ 649 (693)
..+. ..++..+..|...|.+. | +.++|+.++++....++....
T Consensus 155 A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~ 203 (212)
T 3rjv_A 155 SSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203 (212)
T ss_dssp HHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9852 34556777888888753 3 899999999887644444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-08 Score=83.27 Aligned_cols=102 Identities=9% Similarity=-0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|+..|+++.. ..+.+...|..+..+|.+.|++++|+..+++.. .+.++..+..++.++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555566666666666666666553 223345555556666666666666666666553 234445555566666
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
...|++++|...++++++++|++|..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 66666666666666666666655543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-07 Score=81.50 Aligned_cols=120 Identities=10% Similarity=-0.062 Sum_probs=76.5
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 480 FETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 480 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
+..+...+...|++++|...+++.. .|+...+..+..+|...|++++|...+++.. +.+...|..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666677777776666552 4455666666667777777777777766554 44555666666777777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-h----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-H----------------ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
|++++|++.|++..+. .|+ . ..+..+..++...|++++|...++++.
T Consensus 85 ~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777777776663 332 2 455666666677777777777777665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=84.46 Aligned_cols=137 Identities=8% Similarity=-0.092 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKL 623 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~ 623 (693)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344556666777777777777776663 35444555555677777777777777765432 11 111 2345666777
Q ss_pred HHhcCChHHHHHHHHhCCCC---C--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 624 YCRYGYMKELEDFVNRMPFN---P--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
+.+.|++++|+..|++.... | ....+.....++.+.|+.++|...++++.+.+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 77777777777777766422 2 1224555666777777777777777777777776 55555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-07 Score=81.58 Aligned_cols=183 Identities=12% Similarity=-0.024 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch--hHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWET--RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV--VCRGAL 518 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 518 (693)
..+..+...+.+.|++++|+..|+++.... .| ....+..+..++...|++++|...++++.+..+.... ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 445566777888999999999999987654 22 2457777888889999999999999998886544221 133333
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHH----------------
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITF---------------- 581 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~---------------- 581 (693)
..++...+.- ....|..+...+...|+.++|...|+++.+ ..|+. ..+
T Consensus 85 g~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-------------hhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHH
Confidence 4444332210 001122233334456677777777777777 45543 222
Q ss_pred -HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 582 -HGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 582 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+...+.+.|++++|+..++++.+...-.|. ...+..+..+|.+.|+.++|+..++.+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 24456788999999999999999864222221 2567888999999999999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.7e-08 Score=83.66 Aligned_cols=129 Identities=7% Similarity=0.022 Sum_probs=93.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 043637 554 CHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL-YCRYGYM- 630 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 630 (693)
...|++++|...+++..+ ..| +...+..+...|...|++++|...++++.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 455777888888888777 345 4577777778888888888888888888752 23356667777777 6778887
Q ss_pred -HHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 631 -KELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 631 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 88888888774 345567777788888888888888888888888888776554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=75.30 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|.+.++++... .+.+...+..++..+.+.|++++|+..++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555556666666666666666666542 23345556666666666677777766666653 344555666777777
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...|++++|...++++++.+|+++..+..++.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 7778888888888888888887777777777665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00011 Score=75.15 Aligned_cols=123 Identities=12% Similarity=-0.090 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN-ISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
.|...+....+.+..+.|..+|++. .....+...|......-.. .++.+.|..+|+...+.... ++..+...++...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3445555555556666666666666 2112233333221111111 22466666666666654322 2233334444445
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555552 234444444444444455555555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-07 Score=76.41 Aligned_cols=109 Identities=6% Similarity=-0.093 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+...|++++|...++++.+ ..+.+...+..+..+|...|++++|+..+++.. .+.+...+..++..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444444444444444444444432 112233444444444444444444444444432 2333445555556666
Q ss_pred hcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 658 KNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
..|++++|...++++++++|+++..+..++.+|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 666666666666666666666666666655554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=79.14 Aligned_cols=101 Identities=8% Similarity=-0.112 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|.+.|++++|+..+++.. .+.++..+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344444555555555555555555543 122234445555555555555555555555443 2334444555555555
Q ss_pred hcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 658 KNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
..|++++|...++++++++|+++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 5566666666666666665555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-07 Score=87.32 Aligned_cols=223 Identities=10% Similarity=0.014 Sum_probs=153.5
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSE 468 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 468 (693)
.|++++|.+++++..+..- .. + +...++++.|...+ ......|...|++++|.+.|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~------------~~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEY------------AKAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666666665554321 11 0 11147788885544 4457889999999999999988
Q ss_pred hhhC----CCC--CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC---Cc--chhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 469 MQWE----TRP--SKFTFETLLAACANISSLEQGKQIHCFVIRNCY---EI--NVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 469 ~~~~----~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
.... +.+ ...+|..+..+|...|++++|...+++..+... .+ ...++..+..+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7433 211 245788888999999999999999998876311 11 24567788888988 999999999988
Q ss_pred CCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 538 SSS-----LD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 538 ~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
... .+ ..+++.+...+...|++++|+..|++..+. +..+.. ..+..+..++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 661 11 457888999999999999999999998872 111111 3566666788888999999999999
Q ss_pred hHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHH
Q 043637 604 MRCKYGIIPQLE---HYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 604 ~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 636 (693)
.. .....++.. ....++..+ ..|+.+.+..+
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 86 322212222 234445544 67887777663
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-07 Score=73.27 Aligned_cols=110 Identities=9% Similarity=-0.157 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|...++++.. ..+.+...+..++..+.+.|++++|...+++.. .+.+...+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455555666666666666666666654 223345556666666666677777766666553 344556677777777
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888877777776553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-05 Score=75.38 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=161.4
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh-C-CHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC-C-CLE 529 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 529 (693)
..+.+..++|+++++++....+-+...++.--.++...+ .++++..+++.+....++ +...|+.-..++.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344455578888888887776666677776666666667 588888888888876655 666676666666666 6 788
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc----
Q 043637 530 YAIRVFKESS---SLDVIICNSMILGFCHNERGR--------EALEVFGLMKKEGIKP-DHITFHGILLACIHEGN---- 593 (693)
Q Consensus 530 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~---- 593 (693)
+++++++++. +.+..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccc
Confidence 8888888877 455667776665655555555 89999999999 456 56788888777777775
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC--------
Q 043637 594 ---VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM--------------------KELEDFVNRMPF-------- 642 (693)
Q Consensus 594 ---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-------- 642 (693)
++++++.+++++. -.+-|...|..+-..+.+.|+. .+...+..++..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999999885 3445666777777777776654 345555555542
Q ss_pred CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh-hcCCCCCcchhh
Q 043637 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLN-ELNPWAPFQFKI 685 (693)
Q Consensus 643 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~ 685 (693)
.+++..+..+++.|...|+.++|..+++.+. +.+|-....+..
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 2556688889999999999999999999997 678855444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-06 Score=79.27 Aligned_cols=158 Identities=10% Similarity=-0.086 Sum_probs=113.3
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC-----CCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESSS-----LDV----IICNSMILGFCHNERGREALEVFGLMKKEGIK-PD----HITFHG 583 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 583 (693)
.+..+...|++++|...+++... ++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888876441 221 13334666677778999999999998883222 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-HHhHH
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKY----GIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-------FNPT-VPMLR 650 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 650 (693)
+...|...|++++|...++++.+.. +..+. ..++..++..|.+.|++++|+..+++.. .... ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987421 11111 3367888899999999999999888663 1122 55788
Q ss_pred HHHHHHHhcCC-ccHHHHHHHHHhhc
Q 043637 651 KIFDKCRKNGY-ATLGEWAARRLNEL 675 (693)
Q Consensus 651 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 675 (693)
.++..+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888989994 59999999998874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=92.81 Aligned_cols=147 Identities=7% Similarity=-0.116 Sum_probs=90.7
Q ss_pred cCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|++++|+..+.+.+.. | +...|..+...+...|++++|.+.+++.....+.+...+..+..++...|++++|...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35667777777666653 2 456677777777777888888888877776666667777777777777777777777777
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHH
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN---ERGREALEVFGLMKK 571 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 571 (693)
+..+.... +...+..+..+|.+.|++++|.+.+++.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 77775433 45566666677777777777777776654 34455666667777776 777777777777666
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-07 Score=74.02 Aligned_cols=108 Identities=8% Similarity=-0.122 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
+..+...+...|++++|...++++... .+.+...+..++..+...|++++|+..+++.. .+.+...+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 333334444444444444444444321 12233334444444444444444444444332 22233344444445555
Q ss_pred cCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 659 NGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.|++++|...++++++++|+++..+..++.+|
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 55555555555555555555555544444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.7e-07 Score=77.74 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...|..+...+...|++++|++.|++..+ +.| +...|..+..+|...|++++|+..++++.+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 344666667777777777777777777776 445 3456666667777777777777777777642 23345566666
Q ss_pred HHHHHhcCChHHHHHHHHhCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+|.+.|++++|+..|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 667777777777777666553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-05 Score=75.44 Aligned_cols=224 Identities=6% Similarity=-0.101 Sum_probs=141.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC----------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC--CH
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISS----------LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC--CL 528 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 528 (693)
+|++.++.+....+-+...++.--..+...+. ++++..+++.+....++ +..+|+.-..++.+.+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccH
Confidence 55555555555444444433332222222221 45666666666665544 5556666556666666 37
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc------------
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNER-GREALEVFGLMKKEGIKP-DHITFHGILLACIHE------------ 591 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~------------ 591 (693)
++++.+++++. +.+..+|+.-...+...|. ++++++.++++.+ ..| |...|+.....+...
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 77777777766 5667777777777777777 5888888888888 455 456666655544443
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHhCC-CCC-CHHhHHHHHHHH
Q 043637 592 --GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY-----------GYMKELEDFVNRMP-FNP-TVPMLRKIFDKC 656 (693)
Q Consensus 592 --g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 656 (693)
+.++++++.+++... -.+-|...|+.+-..+.+. +.++++++.++++. ..| +.-.+..++...
T Consensus 205 ~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 205 PENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 567888888888875 3344555666555555554 45778888888775 233 333333333221
Q ss_pred ---HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 657 ---RKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 657 ---~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
...|..++....+.++.++||...+.|..|.+-
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 235677889999999999999998988888654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.5e-06 Score=78.41 Aligned_cols=159 Identities=9% Similarity=-0.075 Sum_probs=91.2
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--hHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDV------IICNSMILGFCHNERGREALEVFGLMKKEGI---KPD--HITFH 582 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~ 582 (693)
..+..+...|++++|.+.+++.. +... ..+..+...+...|++++|+..+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34455556666666666655332 1111 1233344555666777777777777665211 111 23566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-------CC-CHHhH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMPF-------NP-TVPML 649 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~ 649 (693)
.+...|...|++++|...++++.+.....|+ ..++..++..|.+.|++++|+..+++... .. ....+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6667777777777777777776621111122 14566677777777777777777765530 01 13456
Q ss_pred HHHHHHHHhcCCccHH-HHHHHHHhhc
Q 043637 650 RKIFDKCRKNGYATLG-EWAARRLNEL 675 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A-~~~~~~~~~~ 675 (693)
..++..|...|++++| ...+++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6667777777777777 6666666653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-07 Score=73.82 Aligned_cols=107 Identities=7% Similarity=-0.192 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|+..+++..+ -.+.+...|..+..+|.+.|++++|+..+++.. .+.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344445555555555556555555553 122334555555555666666666666555543 3344555666666666
Q ss_pred hcCCccHHHHHHHHHhhcC------CCCCcchhhhhh
Q 043637 658 KNGYATLGEWAARRLNELN------PWAPFQFKITTN 688 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 688 (693)
..|++++|...++++++++ |+++.....+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6667777777777777766 655555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=82.50 Aligned_cols=191 Identities=10% Similarity=-0.082 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGF 553 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 553 (693)
...+..+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|...+++.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555666666777777777777777665433 56667777778888888888888887765 45667888888999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
...|++++|+..|++..+ +.|+. ..+...+....+. .++.. +..... ...+.+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKKR-WNSIEE-RRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHH-TCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHHH-HHHHHH-HHHhhhHHHHHHHHHH--HHHHHHH
Confidence 999999999999998887 44532 1222222222211 11111 122222 2445555555555333 3688899
Q ss_pred HHHHHHhCC-CCCCH-HhHHHHHHHHHhc-CCccHHHHHHHHHhhcCC
Q 043637 633 LEDFVNRMP-FNPTV-PMLRKIFDKCRKN-GYATLGEWAARRLNELNP 677 (693)
Q Consensus 633 A~~~~~~~~-~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 677 (693)
|++.+++.. ..|+. .....+...+... +.+++|.+.++++.+..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 998887764 34443 3344444444443 567888888888877443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=69.90 Aligned_cols=104 Identities=8% Similarity=-0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+......+.+.|++++|++.|++.++ +.| +...|..+..++...|++++|+..++++.+ -.+.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 455566677777777777777777776 455 346666677777777777777777777764 223345667777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
|...|++++|+..|++.. .+.+...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 777777777777777664 33344444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=72.59 Aligned_cols=109 Identities=11% Similarity=-0.084 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
..+..+...+...|++++|...+++..+ ..|+ ...+..+..+|.+.|++++|+..+++.. .+.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4455555555566666666666665542 2333 4455555666666666666666665543 23345566666
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...+...|++++|...++++++++|+++.....++.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777777777777777777777776666665553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-06 Score=74.96 Aligned_cols=97 Identities=10% Similarity=-0.058 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-C-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKE----GIKP-D-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---- 613 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 613 (693)
.++..+...+...|++++|.+.+++..+. |-.| . ...+..+...+...|++++|...+++..+......+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 35566666777777777777777665552 1122 1 244666667777788888888877777642111122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
...+..+...+.+.|++++|...+++.
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223456677777778887777777654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-06 Score=75.58 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=113.2
Q ss_pred hhCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHhccCcHH
Q 043637 524 KCCCLEYAIR---VFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKK----EGIKPD-HITFHGILLACIHEGNVK 595 (693)
Q Consensus 524 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~ 595 (693)
..|++++|.+ .+..........+..+...+...|++++|...+++..+ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 55443334566788888888999999999998888766 222332 367788889999999999
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHH----hHHHHHHHHHhcCCc
Q 043637 596 LALQFFDSMRCKYGIIP-Q----LEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVP----MLRKIFDKCRKNGYA 662 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~ 662 (693)
+|...+++..+.....+ + ...+..+...+...|++++|...+++.. ..++.. .+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999999875322222 2 3457788899999999999999998764 223332 356788889999999
Q ss_pred cHHHHHHHHHhhcCC
Q 043637 663 TLGEWAARRLNELNP 677 (693)
Q Consensus 663 ~~A~~~~~~~~~~~p 677 (693)
++|...+++++++..
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-05 Score=75.05 Aligned_cols=167 Identities=10% Similarity=-0.051 Sum_probs=97.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC--CCCHH----HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET--RPSKF----TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
..+..+...|++++|.+.+++..... .|+.. .+..+...+...++++.|...++++.+.........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~------- 152 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY------- 152 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-------
Confidence 34667778888888888888876544 33321 233455566667777888777777776322211100
Q ss_pred HHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCCCh-HHHHHHHHHHhccCcHH
Q 043637 522 YTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKK----E-GIKPDH-ITFHGILLACIHEGNVK 595 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~l~~~~~~~g~~~ 595 (693)
....+++.+...|...|++++|+..++++.+ . +..|.. .++..+...|.+.|+++
T Consensus 153 -------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 153 -------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence 0012355555666666666666666666553 1 112222 35666777777777777
Q ss_pred HHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCC-hHHHHHHHHhC
Q 043637 596 LALQFFDSMRCK---YGIIPQ-LEHYECMIKLYCRYGY-MKELEDFVNRM 640 (693)
Q Consensus 596 ~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 640 (693)
+|+..+++..+. .+..+. ...|..+..+|.+.|+ +++|...+++.
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 777777766541 111222 4567777777777774 47777666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-07 Score=87.53 Aligned_cols=172 Identities=6% Similarity=-0.120 Sum_probs=121.0
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILL 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 586 (693)
+...+..+...+.+.|++++|...+++.. +.+...|..+..++.+.|++++|+..+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34566778888999999999999999876 55788999999999999999999999999998 5675 578888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHH
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
++...|++++|...++++.+. .|+. ..+...+....+.++...... ......+.+......+... . .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l-~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL-I-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH-H-HHHHHHH
Confidence 999999999999999998752 1211 111112222222222222222 2223334444444444333 2 6889999
Q ss_pred HHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 666 EWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 666 ~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...++++++++|++......+..++
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHH
Confidence 9999999999998765555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-05 Score=70.69 Aligned_cols=52 Identities=6% Similarity=-0.110 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH--HHHHHHHHHHHhCC
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE--QGKQIHCFVIRNCY 508 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~ 508 (693)
++++++++.++++....+-+...+..-..++...|.++ ++.+.++++++..+
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 45555666666555544445555544444444445444 55555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=6.7e-07 Score=74.81 Aligned_cols=102 Identities=9% Similarity=-0.100 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...+..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|...|++++|+..|+++.+. .+.++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 455777788888899999999999999888 5674 577888888999999999999999998852 33457778888
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 621 IKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
..+|.+.|++++|+..|++.. ..|+.+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999988775 345544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4e-06 Score=71.89 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|...+++..+ ..| +...+..+..++...|++++|...+++..+ ..+.+...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 456666777777888888888877777 344 456677777777778888888888887775 233456667777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHH--HHHHHHhcCCccHHHHHHHHHhhc
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRK--IFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+.+.|++++|...+++.. .+.+...+.. .+..+...|++++|...+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888877764 2334444433 333356677888888887776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=78.25 Aligned_cols=137 Identities=6% Similarity=-0.107 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhc
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIH 590 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~ 590 (693)
.-.+...+...|++++|.++|+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3456677888999999999999987 4544466777778999999999999998665521 121 2367778899999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIF 653 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 653 (693)
.|++++|+..|++... ....|. .........++.+.|+.++|...|+++. ..|+...+..|.
T Consensus 184 LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 9999999999999974 232254 4456778888999999999999999986 345544544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-06 Score=72.38 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHh
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACI 589 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 589 (693)
.+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+ ..| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 34445556666666777666666544 44566777788888888888888888888877 345 4567777778888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHhC
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYE--CMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..|++++|...++++.+. .+.+...+. .++..+.+.|++++|+..+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 888888888888888753 222334443 3334467778888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-06 Score=66.78 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...|..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 345666667777777777777777777763 34 3456666777777777777777777777642 334556667777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
..|.+.|++++|...++++. .+.+...+..+...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777777663 23444455555544443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=4e-06 Score=68.65 Aligned_cols=116 Identities=8% Similarity=-0.106 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...|..+...+...|++++|.+.+++..+ ..| +...+..+..++...|++++|...++++.+ -.+.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 3455677777888888888888888888877 445 456777777888888888888888888875 23345667777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+..+|.+.|++++|+..+++.. .+.+...+..+...+...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888887764 2334445555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=67.65 Aligned_cols=101 Identities=13% Similarity=-0.027 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHhHHHHH
Q 043637 578 HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNP--TVPMLRKIF 653 (693)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~ 653 (693)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|+..+++.. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 355666777777888888888888877752 33456667777788888888888888887664 234 567777888
Q ss_pred HHHHhc-CCccHHHHHHHHHhhcCCCCC
Q 043637 654 DKCRKN-GYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 654 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+... |++++|...++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888999999998888888654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-06 Score=66.88 Aligned_cols=116 Identities=14% Similarity=-0.037 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...+++..+. .+.+...+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 445666667777777777777777777763 44 4566666777777777777777777777642 233466677777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCc
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 662 (693)
..|.+.|++++|...+++.. .+.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777664 344555666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-07 Score=82.01 Aligned_cols=152 Identities=5% Similarity=-0.087 Sum_probs=92.3
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-h----------------
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-H---------------- 578 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---------------- 578 (693)
+......|.++++.+.++... ......+..+...+...|++++|+..|++..+ +.|+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHH
Confidence 334455566666666665433 12344677778888888999999999998888 3443 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+..+|...|++++|+..++++.+ -.+.+...+..+..+|...|++++|+..|++.. .+.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5677777888888888888888888875 234456777778888888888888888887764 344556666666666
Q ss_pred HhcCCccHHH-HHHHHHhh
Q 043637 657 RKNGYATLGE-WAARRLNE 674 (693)
Q Consensus 657 ~~~g~~~~A~-~~~~~~~~ 674 (693)
...|+..++. ..++.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6665555544 34444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=70.18 Aligned_cols=99 Identities=9% Similarity=-0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|+..++++.+ ..+.+...+..+..++.+.|++++|+..+++.. .+.+...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555677777888888888887774 233356667777777888888888888877764 3456667777888888
Q ss_pred hcCCccHHHHHHHHHhhcCCCCC
Q 043637 658 KNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..|++++|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=82.95 Aligned_cols=118 Identities=10% Similarity=-0.069 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-C---------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS--SL-D---------------VIICNSMILGFCHNERGREALEVFGLMKKEG 573 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 573 (693)
...+..+...|.+.|++++|...|++.. .| + ...|..+..++.+.|++++|+..+++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 4455556666666666666666666544 22 2 34556666666666666666666666666
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
+.|+ ...|..+..+|...|++++|+..|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3443 355555556666666666666666666531 222344555555666666666655
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-05 Score=75.17 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-Ch
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE-GIKPD-----HITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIP-QL 614 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~ 614 (693)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666777777777777777777776521 01222 1466777777888888888888877775421 1111 14
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHhC
Q 043637 615 EHYECMIKLYCRYGYMKEL-EDFVNRM 640 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 640 (693)
..|..+..+|.+.|+.++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677777788888888877 6656554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-06 Score=71.65 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|+..|++... ..| +...|..+..+|...|++++|+..++++... .+.++..+..+..+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHH
Confidence 344444455555555555555555554 233 2344444445555555555555555555431 12234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 043637 624 YCRYGYMKELEDFVNRM 640 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~ 640 (693)
|...|++++|+..|++.
T Consensus 99 ~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 55555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-06 Score=70.01 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 444555555555555555555555555555 2332 344555555555555555555555555531 12234444455
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 043637 621 IKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+|...|++++|+..+++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-06 Score=67.25 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455666666667777777777776666 4554 35566666666666777777666666653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-06 Score=82.93 Aligned_cols=133 Identities=10% Similarity=-0.013 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH------------------HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI------------------TFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...+.+.|++++|+..|++..+ +.|+.. .|..+..+|.+.|++++|+..++++.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666677777777766665 345432 788888999999999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHH-HhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 607 KYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKC-RKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 607 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
..+.+...+..+..+|...|++++|+..|++.. ..| +...+..+.... ...+..+++...++++++..|+++.
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 234467888999999999999999999999886 233 444555555543 3456788899999999999997763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=77.91 Aligned_cols=150 Identities=11% Similarity=-0.039 Sum_probs=86.8
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCH----------------HHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDV----------------IIC 546 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~----------------~~~ 546 (693)
.....|+++.+.+.|+.-...... ....+..+...+...|++++|...|++.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455566665555433221111 33445566677777788888888777654 2232 567
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
..+..++...|++++|+..+++..+ +.|+ ...+..+..++...|++++|...|++..+. .+-+...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 7777777888888888888888777 4553 466777777788888888888888877642 2334556666777777
Q ss_pred hcCChHHHH-HHHHhC
Q 043637 626 RYGYMKELE-DFVNRM 640 (693)
Q Consensus 626 ~~g~~~~A~-~~~~~~ 640 (693)
+.|+.+++. ..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 766666655 344444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.8e-06 Score=81.57 Aligned_cols=130 Identities=4% Similarity=-0.115 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----------------ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+...|..+...+.+.|++++|+..|++..+ +.|+. ..|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888899999999999999999999998 55654 788888899999999999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH-HHHHHHHhhc
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG-EWAARRLNEL 675 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 675 (693)
+. .+.+...+..+..+|...|++++|+..|++.. .+.+...+..+...+...|+.++| ...++++++.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 34467888999999999999999999999875 456677888888899999999888 5577777663
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-06 Score=72.51 Aligned_cols=92 Identities=5% Similarity=0.054 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHH-HHhCCCh--HHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILG-FCHNERG--REALEVFGLMKKEGIKPD-HITFHGIL 585 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~m~~~g~~p~-~~~~~~l~ 585 (693)
..+..+..+|...|++++|...+++.. +.+...+..+..+ +...|++ ++|...+++..+ ..|+ ...+..+.
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la 122 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 333444444444444444444444333 3344455555555 5566666 666666666666 3443 35555566
Q ss_pred HHHhccCcHHHHHHHHHHhHH
Q 043637 586 LACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+...|++++|...++++.+
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 666666777777776666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=81.78 Aligned_cols=162 Identities=9% Similarity=-0.103 Sum_probs=129.4
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 043637 527 CLEYAIRVFKESS---SLDVIICNSMILGFCHNER----------GREALEVFGLMKKEGIKPD-HITFHGILLACIHEG 592 (693)
Q Consensus 527 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 592 (693)
..++|++.++++. +.+..+|+.-...+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3456677776665 4455677766666666666 8999999999998 5674 578888888888889
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc--------
Q 043637 593 --NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG-YMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN-------- 659 (693)
Q Consensus 593 --~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-------- 659 (693)
+++++++.++++.+ -.+-+...|+.-..++.+.| ..+++++.++++. .+.+...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999986 34557778888888888888 8999999999886 456788888888877663
Q ss_pred ------CCccHHHHHHHHHhhcCCCCCcchhhhhhcccC
Q 043637 660 ------GYATLGEWAARRLNELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 660 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 692 (693)
+.++++.+.++++++++|+|..++..+++++..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 456899999999999999999999999998753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=67.03 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYECMI 621 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 621 (693)
+...+...|++++|...|+++.+ ..|+. ..+..+..++...|++++|...++++... .+.+ +..+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 34445555555555555555555 23322 24444455555555555555555555432 1111 33344444
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 043637 622 KLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~ 640 (693)
.+|.+.|++++|...|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4455555555555544444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=65.09 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-----FNPT----VPML 649 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~ 649 (693)
..+..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++.. ..++ ...+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34556666777777777777777777642 23345566667777777777777777766553 1111 1245
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 650 RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
..++..+...|++++|...++++++..| ++.....|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 5566666667777777777777777666 44444333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=69.23 Aligned_cols=106 Identities=7% Similarity=-0.137 Sum_probs=68.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-------C
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIP-----Q-----LEHYECMIKLYCRYGYMKELEDFVNRMP-F-------N 643 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~ 643 (693)
......+.+.|++++|+..|++..+-....| + ...|..+..++.+.|++++|+..+++.. . .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3334455555555555555555553111100 1 1256666666777777777766666553 2 4
Q ss_pred CC-HHhH----HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 644 PT-VPML----RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 644 ~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
|+ ...| ...+.++...|++++|...|+++++++|+|.+...-+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44 4577 88889999999999999999999999999887665543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-06 Score=72.23 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.|..+..+|.+.|++++|+..+++.. .+.+...+..++.++...|++++|...++++++++|+++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 34444555555555555555554442 233444555555555555555555555555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-05 Score=65.02 Aligned_cols=111 Identities=6% Similarity=-0.138 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEH 616 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 616 (693)
.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..++...|++++|+..+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 4556777788888888888888888888887 5666 466777778888888888888888888752 2335667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
+..+..+|.+.|++++|...+++.. .+.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7788888888888888888888764 23344444444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=64.63 Aligned_cols=94 Identities=10% Similarity=-0.089 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
..|..+...+.+.|++++|+..|++..+ +.| +...|..+..++...|++++|+..++++.+. .+.+...+..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3455666667777777777777777776 345 3466666777777777777777777777642 2334566677777
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 043637 623 LYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~ 641 (693)
+|...|++++|+..+++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 81 AQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 7777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-05 Score=61.77 Aligned_cols=95 Identities=12% Similarity=-0.055 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...++++.+. .+.+...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34566677777888888888888888877 345 4566777778888888888888888888752 334566777788
Q ss_pred HHHHhcCChHHHHHHHHhCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|.+.|++++|...+++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 88888888888888887764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4.8e-06 Score=67.87 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCC----hhHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGI-IPQ----LEHY 617 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~ 617 (693)
..|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++...... .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666667777777777777777777763 34 3456666667777777777777777776642111 111 4455
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..++.+|.+.|++++|...+++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 55556666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-05 Score=67.18 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 587 (693)
...+..+...+.+.|++++|+..|++.. +.+...|..+..++...|++++|+..+++..+ +.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445555566666666666666666654 44667788888888888899999999988888 5665 5778888888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
+...|++++|...|+++.+...-.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88899999999999888764333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-05 Score=64.85 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|+..++++... .+.++..+..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 444455556666666666666666665 344 3345555556666666666666666666541 22344555556666
Q ss_pred HHhcCChHHHHHHHHhC
Q 043637 624 YCRYGYMKELEDFVNRM 640 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~ 640 (693)
|...|++++|+..|++.
T Consensus 96 ~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-06 Score=86.18 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 043637 522 YTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLA 597 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 597 (693)
+.+.|++++|.+.+++.. +.+...|..+..++.+.|++++|++.+++..+ +.|+ ...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 334455555555554433 22344444445555555555555555555444 2332 24444444445555555555
Q ss_pred HHHHHHhH
Q 043637 598 LQFFDSMR 605 (693)
Q Consensus 598 ~~~~~~~~ 605 (693)
.+.++++.
T Consensus 94 ~~~~~~al 101 (477)
T 1wao_1 94 LRDYETVV 101 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=67.50 Aligned_cols=133 Identities=10% Similarity=-0.028 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIK-PD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LE 615 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 615 (693)
++..+...+...|++++|...+++..+..-. ++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666677777777777666552100 11 135666667777777777777777776542111111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
.+..+...+...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45666777777788877777776553 1122 23556677777788888888888888877644
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-05 Score=72.29 Aligned_cols=162 Identities=8% Similarity=-0.059 Sum_probs=122.9
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc-C-cHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNE-RGREALEVFGLMKKEGIKPD-HITFHGILLACIHE-G-NVKLAL 598 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~-g-~~~~A~ 598 (693)
+..++|+++++.+. +.+..+|+.--..+...| +++++++.++.+.. ..|. ..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666655 445567777777777777 58999999999988 5674 46777766666665 6 788999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH--------HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCC-------
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK--------ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGY------- 661 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~------- 661 (693)
++++++.+ ..+.+...|..-..++.+.|..+ ++++.++++. .+.+...|......+...+.
T Consensus 146 ~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999874 44556777777777777766666 8888888775 56678888888888877765
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++++.+.++++++++|+|.+++..+.+++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 688999999999999999999998888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00017 Score=68.27 Aligned_cols=187 Identities=8% Similarity=-0.051 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC--
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCC----------LEYAIRVFKESS---SLDVIICNSMILGFCHNER-- 558 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 558 (693)
++|....+.+...++. +...++.--.++...+. +++++.+++.+. +.+..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 4677777777775543 33334433333333222 678888888776 6677888888888888884
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---------
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY--------- 627 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 627 (693)
+++++.+++++.+ ..| |...|+.-...+...|. ++++++.++++++ ..+-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 8999999999999 566 56788877777777887 6999999999986 3345666676666665554
Q ss_pred -----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc-----------CCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 628 -----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN-----------GYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 628 -----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
+.++++++.+++.. .+.|...|..+-..+... +.++++.+.++.+++++|++.-.+..
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 55788998888775 577888887666666554 35789999999999999987544333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00049 Score=69.65 Aligned_cols=161 Identities=6% Similarity=-0.158 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCH----HHHHHHHHHhcccCChHHHHHHHHHHHHh----CCC-cchhH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWET--RPSK----FTFETLLAACANISSLEQGKQIHCFVIRN----CYE-INVVC 514 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 514 (693)
+..+...|...|++++|.+.+..+.... .++. ...+.+...+...|+.+.+..++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888888764332 2221 22333444556678888888888877651 222 23456
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--hH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD--HI 579 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~ 579 (693)
+..+...|...|++++|..++++.. +.....+..++..|...|++++|...+++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888999999999988887643 112347888899999999999999999887652 11122 24
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666788889999999988887754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=80.18 Aligned_cols=129 Identities=6% Similarity=-0.096 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----------------HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
....|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|.+.|++++|+..++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355788888999999999999999999988 4554 3678888888899999999999999888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHH-HHHHHhh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEW-AARRLNE 674 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 674 (693)
+ -.+.+...|..+..+|.+.|++++|+..|+++. .+.+...+..+...+...|+.++|.. .+++++.
T Consensus 345 ~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 G--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred h--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 234467778888888999999999999888774 34455577777778887777776653 4454443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-06 Score=68.41 Aligned_cols=84 Identities=8% Similarity=0.020 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 556 NERGREALEVFGLMKKEGI-KPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
.|++++|+..|++..+.+. .|+ ...+..+..+|...|++++|+..++++.+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666777777777776321 232 355666667777777777777777777642 233455566666666666666666
Q ss_pred HHHHHhCC
Q 043637 634 EDFVNRMP 641 (693)
Q Consensus 634 ~~~~~~~~ 641 (693)
+..+++..
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00023 Score=72.09 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=32.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--CCH---------------HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 450 LTGYARRGQSEEAMTSFSEMQWETR--PSK---------------FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 450 ~~~~~~~~~~~~a~~~~~~~~~~~~--p~~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
...+.+.|++++|++.|..+....+ .+. ..+..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556778888888888888765541 110 1244455555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=64.63 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----hHHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGI--KPD----HITFHGIL 585 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l~ 585 (693)
+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+..- .++ ..++..+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 4444555555555555555555443 34555666777777777778888777777766310 111 55677777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.++...|++++|.+.++++.+. .|+......+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 7888888888888888888752 34555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.8e-05 Score=60.12 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=63.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC---HHhHHHHH
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP--FNPT---VPMLRKIF 653 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~ 653 (693)
..+...+...|++++|...++++.+. .+.+. ..+..+..+|.+.|++++|+..+++.. .+.+ +..+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34455666777777777777777642 11222 356666677777777777777776653 2222 44556666
Q ss_pred HHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 654 DKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.++...|++++|...++++++..|+++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 6777777777777777777777776654443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-05 Score=59.64 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP--QLEHYE 618 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~ 618 (693)
+...+..+...+...|++++|...+++..+ ..| +...+..+..++...|++++|.+.++++.+ ..+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 344556666777777777777777777777 344 346666777777777788888887777764 2233 466677
Q ss_pred HHHHHHHhc-CChHHHHHHHHhCC
Q 043637 619 CMIKLYCRY-GYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~~~-g~~~~A~~~~~~~~ 641 (693)
.+..+|.+. |++++|++.+++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 777777777 88888877777664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=7.9e-05 Score=61.16 Aligned_cols=100 Identities=7% Similarity=-0.198 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD 654 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 654 (693)
+...+..+...+...|++++|...+++.... .+.+...+..+..+|.+.|++++|+..+++.. .+.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666777777777777766642 23345566666666777777777776666653 3445556666666
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCC
Q 043637 655 KCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+...|++++|...++++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666677777777777777776665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=5.8e-05 Score=60.37 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
..+...+.+.|++++|+..+++..+ ..|+ ...|..+..++...|++++|+..++++.+. .+.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445555666666666666666666 3453 455555556666666666666666666531 2223455566666666
Q ss_pred hcCChHHHHHHHHhC
Q 043637 626 RYGYMKELEDFVNRM 640 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~ 640 (693)
+.|++++|+..+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=64.38 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LE 615 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 615 (693)
++..+...+...|++++|.+.+++..+. +-.+. ...+..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5666677777777777777777776552 11111 345666677888888888888888877642111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.+..+...|...|++++|...+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667778888888888888887754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.90 E-value=9.9e-05 Score=75.35 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=94.8
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCh
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERG 559 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 559 (693)
+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|+..+++.. +.+...|..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344577889999999999999987544 57888999999999999999999999876 55678999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHH--HhccCcHHHHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPD-HITFHGILLA--CIHEGNVKLALQFFD 602 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 602 (693)
++|++.+++..+ +.|+ ...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998 4664 3555555555 888899999999998
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-05 Score=76.74 Aligned_cols=109 Identities=8% Similarity=-0.136 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------------------hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL------------------EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+..+...+.+.|++++|+..|+++... .|+. ..|..+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677788999999999999999998752 3443 27888999999999999999999987
Q ss_pred C--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 641 P--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 641 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
. .+.+...+..+..+|...|++++|...++++++++|+++..+..|+.+.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5 4567788999999999999999999999999999999999998888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=58.27 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
...+..+...+.+.|++++|+..+++.. .+.+...+..+...+...|++++|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455666666777777777777776653 34456677778888888888888888888888888888888888887764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=75.64 Aligned_cols=120 Identities=5% Similarity=-0.127 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHC--------------CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKE--------------GIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
...+..+...+.+.|++++|++.|++..+. ...| +...|..+..+|.+.|++++|+..++++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE- 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-
Confidence 345667777778888888888888877761 0122 123444445555555555555555555542
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 608 YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 608 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
-.+.+...+..+..+|.+.|++++|+..|++.. .+.+...+..+...+...++.++
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112234444455555555555555555555442 22333344444444444443333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.8e-06 Score=82.95 Aligned_cols=455 Identities=12% Similarity=0.111 Sum_probs=222.0
Q ss_pred CCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh
Q 043637 75 PPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSA 154 (693)
Q Consensus 75 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 154 (693)
..+.+|+.|.+++...|++.+|++-|- +..|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 356788889999998898888888764 455777888999999999999999998887777633 3344457788888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHH
Q 043637 155 EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFK 234 (693)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 234 (693)
+.+++.+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|++.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887766544432 45655556666777777777777777666542 11122222233333333222111
Q ss_pred HHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCC---CCCch
Q 043637 235 MLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPD---ERNII 311 (693)
Q Consensus 235 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~ 311 (693)
.-+..||..+-.+|...+++..|...--.++-.. .-...++..|-..|.+++-+.+++... +....
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 1122344444444444444433332222211110 001122333444444444444444322 12333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 043637 312 SWTSIVSGYAISGRIREARELFNEMPE-----------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLG 380 (693)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (693)
+++.|.-.|++- +.++..+-++.... .....|.-++-.|..-.+++.|...+- +. .|+.+.-.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi---~h--~~~Aw~h~ 338 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEG 338 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTT---SC--HHHHCCGG
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHH---hC--ChhhccHH
Confidence 444444444433 22233332222211 233456666666666666665543221 00 00111001
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH-------------HHHHHcCChHHHHHHHHhhcCCCChh-hH
Q 043637 381 LILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL-------------DMYRKCGNLRSARIWFYQMSQRRDKV-SW 446 (693)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 446 (693)
.+.....+..+.+.--+....-. .-.+...+.|+ +.+.+.|.+.-. +-+....+..|.. .=
T Consensus 339 ~Fkdii~KVaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLI-kpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 339 QFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV-KPYLRSVQNHNNKSVN 413 (624)
T ss_dssp GGTTTGGGCSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGG-TGGGTSCCCSCCHHHH
T ss_pred HHHHHHHHcchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhh-HHHHHHHHHhhHHHHH
Confidence 11111111122111111111111 11111122232 233333444333 2122222222222 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
.++-..|....+++.- ..-+..|-.-.....|.++ .++ .-......-...|.+.+
T Consensus 414 eAln~L~IEEEDy~~L------------------R~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 414 ESLNNLFITEEDYQAL------------------RTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp HHHHHHHHHTTCCHHH------------------HHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhHHHH------------------HHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcc
Confidence 3334445555544422 1122222233333333222 221 12233334455688888
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 043637 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
+|+++..+.++-. .|.-.|......|+.+-|.++++-..+.| +...|...+-.|...=++|-++++
T Consensus 469 rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 469 RWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8888887765433 11222445567788888888988888865 556788888888888787777766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.81 E-value=8.8e-05 Score=75.38 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=104.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC---------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD---------------VIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
....+..+...|.+.|++++|...|++.. +.+ ...|..+..++.+.|++++|+..+++.++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 45567788899999999999999999876 333 57899999999999999999999999999
Q ss_pred CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH-HHHhCC
Q 043637 573 GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED-FVNRMP 641 (693)
Q Consensus 573 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 641 (693)
+.|+ ...|..+..+|...|++++|+..|+++.+ -.+-+...+..+..++.+.|+.++|.. .+.+|-
T Consensus 346 -~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 -LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5674 67888999999999999999999999984 233356778889999999999988764 566664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00023 Score=58.37 Aligned_cols=120 Identities=7% Similarity=-0.103 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKE 632 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 632 (693)
+++++|++.|++..+.| .|+.. |...|...+.+++|.+.|++..+. -++..+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 33333 667888888899999999998852 466778888888888 899999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 633 LEDFVNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 633 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
|..+|++.....++.....+...|.. .+|.++|...++++.+... +.+...|+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILN 136 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHh
Confidence 99999988777888888889999988 7899999999999988743 44444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.4e-05 Score=64.35 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=60.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH----------HHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 043637 555 HNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNV----------KLALQFFDSMRCKYGIIP-QLEHYECMIK 622 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 622 (693)
+.+.+++|.+.+++..+ +.| +...|..+..++...+++ ++|+..|++.++ +.| +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHH
Confidence 44556667777766666 455 345566566666666553 355555555553 222 2344555555
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 623 LYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+|...|.+ .|+.+. ..|++++|...|+++++++|+++.....+
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55544432 122111 12588999999999999999876554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00021 Score=60.74 Aligned_cols=95 Identities=7% Similarity=-0.077 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-------CC---------CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE-------GI---------KPD-HITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
.+......+.+.|++++|+..|.+..+. +- .|. ...|..+..+|.+.|++++|+..++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 4455566666667777777766666652 00 232 25677777888888888888888888875
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 608 YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 608 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-.+.+...|..+..+|...|++++|+..|++..
T Consensus 92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 92 -REETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 234456777888888888888888888887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.7e-05 Score=58.84 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-------HHh
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT-------VPM 648 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~ 648 (693)
+...+..+...+...|++++|+..++++.+ -.+.+...+..+..+|.+.|++++|+..+++.. ..|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 455677777888888888888888888875 233456777778888888888888888887764 2333 344
Q ss_pred HHHHHHHHHhcCCccHHHHHHH
Q 043637 649 LRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 649 ~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
+..+..++...|+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5555666666666666554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.70 E-value=7e-05 Score=59.51 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
...+..+..++...|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..+++..+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44677788888999999999999999988 5664 577888888999999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00024 Score=69.68 Aligned_cols=140 Identities=8% Similarity=-0.099 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN 556 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (693)
...+..+...+.+.|++++|...+++..+.... . ......+++ ....+.+...|..+..++.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAEDADG----AKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSCHHHH----GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccChHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 345666666777777777777777766652100 0 000000000 011123456788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|++.+++..+ +.|+ ...|..+..+|...|++++|+..++++.+. .+.+...+..+..++.+.++.+++.+
T Consensus 287 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 5674 578888889999999999999999999852 23356777788888888888887765
Q ss_pred H
Q 043637 636 F 636 (693)
Q Consensus 636 ~ 636 (693)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.6e-05 Score=58.90 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ------- 613 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~------- 613 (693)
+...|..+...+...|++++|++.+++..+ +.| +...+..+..++...|++++|+..++++.+ ..|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 455677888889999999999999999988 456 457788888999999999999999999874 3444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+..+..++...|+.++|+..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4556677777777887777776666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=74.28 Aligned_cols=181 Identities=7% Similarity=-0.081 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC--C
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCC----------LEYAIRVFKESS---SLDVIICNSMILGFCHNE--R 558 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g--~ 558 (693)
++|.+.++++...+++ +...|+.-..++...|+ ++++++.++.+. +.+..+|+.-...+.+.| +
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3444555555544333 33334433344444444 666666666655 456667777777777888 6
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---------
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEG-NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY--------- 627 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 627 (693)
++++++.++++.+ ..| |...|+.-...+...| .++++++.++++++ ..+-+...|......+.+.
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 6899999999988 556 4577777777777778 88888888888874 3344566676666665553
Q ss_pred -----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH------------HHHHHHHHhhcCCCC
Q 043637 628 -----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL------------GEWAARRLNELNPWA 679 (693)
Q Consensus 628 -----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~p~~ 679 (693)
+.+++|++.++++. .+.+...|......+...+..++ |...|.+.++++|..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 55788888887764 56677888888888877776544 334455566666643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=58.85 Aligned_cols=60 Identities=15% Similarity=-0.022 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCh-HHH----HHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGI-------KPDH-ITF----HGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.|..+..++.+.|++++|+..+++.++ + .|+. ..| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666666666666666666666666 4 5653 455 5666666666666666666666653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.003 Score=59.96 Aligned_cols=147 Identities=12% Similarity=-0.054 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhc---cC-----cHHHHHHHHHHhH
Q 043637 540 SLDVIICNSMILGFC--HNE---RGREALEVFGLMKKEGIKPDH-ITFHGILLACIH---EG-----NVKLALQFFDSMR 605 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~ 605 (693)
+.+...|..++++.. ..+ +..+|..+|++..+ +.|+. ..|..+..+|.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445555666555433 222 35789999999999 68874 455544444421 11 1111111222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.....+.++.+|..+...+.-.|++++|...++++. .+|+...|..+...+...|+.++|.+.+++++.++|..+ +|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 111335577788888888888899999999999886 357777777778888899999999999999999999654 666
Q ss_pred hhhhc
Q 043637 685 ITTNR 689 (693)
Q Consensus 685 ~l~~~ 689 (693)
...|+
T Consensus 348 ~~~~l 352 (372)
T 3ly7_A 348 WIENG 352 (372)
T ss_dssp HHHHS
T ss_pred HHhCc
Confidence 65554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0005 Score=52.57 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...+..+...+...|++++|+..|++..+ +.|+ ...|..+..+|...|++++|.+.+++..+.....++......
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3455666777777777777777777777777 4453 456666777777777777777777776642222334443333
Q ss_pred HHHHH
Q 043637 620 MIKLY 624 (693)
Q Consensus 620 l~~~~ 624 (693)
+...+
T Consensus 83 l~~~l 87 (100)
T 3ma5_A 83 LQDAK 87 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00025 Score=55.97 Aligned_cols=77 Identities=9% Similarity=-0.120 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.|++.|++..+ ..|+ ...+..+...+...|++++|+..++++.+. .+.+...+..+..+|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56777888777 4564 577777888888888888888888888752 334566777888888888888888888876
Q ss_pred CC
Q 043637 640 MP 641 (693)
Q Consensus 640 ~~ 641 (693)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00019 Score=54.76 Aligned_cols=88 Identities=10% Similarity=-0.055 Sum_probs=59.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLE-HYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
....+...|++++|+..++++.+. .+.+.. .+..+..+|.+.|++++|+..|++.. .+.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 445677888888888888888752 233456 77777888888888888888887764 2233333211 4
Q ss_pred CccHHHHHHHHHhhcCCCCCc
Q 043637 661 YATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 661 ~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+.++...++++.+.+|+++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 566677777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=67.07 Aligned_cols=61 Identities=7% Similarity=-0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKY--GIIPQ----LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+++.|..+|...|++++|..+++++.+-. -+.|+ ..+++.|...|...|++++|+.++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444555555555544444443200 11111 223444444555555555555444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0007 Score=53.34 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.+...+..+...+...|++++|+..+++..+ +.|+ ...|..+..++...|++++|...+++..+
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888888999999999999999888 4564 56788888899999999999999998875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0058 Score=49.84 Aligned_cols=108 Identities=10% Similarity=-0.106 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 458 QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
++++|++.|++....+.|... +...|...+.++.|.+.|++..+.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------------------------------- 54 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL------------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------------------------------
Confidence 455666666666555544433 444455555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 043637 538 SSSLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRC 606 (693)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 606 (693)
.++..+..+...|.. .++.++|.+.|++..+.| +...+..|...|.. .+++++|...+++..+
T Consensus 55 ---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 ---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp ---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344445555555555 567777777777777654 44556666666666 6777777777777764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00036 Score=57.42 Aligned_cols=91 Identities=21% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNER----------GREALEVFGLMKKEGIKPD-HITFHGILLACIHE 591 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 591 (693)
+.+++|...++... +.+...|..+..++...++ +++|+..|++.++ +.|+ ...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Confidence 44555555555544 4455566666666665554 4588888888888 6775 47788888888776
Q ss_pred C-----------cHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 592 G-----------NVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 592 g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
| ++++|++.|+++.+ +.|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 4 78888888888874 466655554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0022 Score=47.56 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
..+..+...+...|++++|+..+++..+ ..| +...+..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4555566666677777777777777666 334 3455666666777777777777777776642 2233445555555
Q ss_pred HHHhc
Q 043637 623 LYCRY 627 (693)
Q Consensus 623 ~~~~~ 627 (693)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0024 Score=64.62 Aligned_cols=125 Identities=7% Similarity=-0.091 Sum_probs=70.7
Q ss_pred HHHHHHhhCCCCCc----ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHH
Q 043637 328 EARELFNEMPERNV----ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIH 403 (693)
Q Consensus 328 ~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (693)
+++++.+....++. .+++.|...|...|++++|..++++..+. ++...
T Consensus 334 ~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------------------~~~~l 385 (490)
T 3n71_A 334 ECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------------------YMKLY 385 (490)
T ss_dssp HHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------------HHHHc
Confidence 55555555554332 46888888999999999999998876541 11111
Q ss_pred HhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH-HHHHH
Q 043637 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK-FTFET 482 (693)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~~~~ 482 (693)
....+....+++.|...|...|++++|+..+.+ |+++++.......|+. .+...
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~-------------------------Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK-------------------------AYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHHTCTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------HHHHHHHHhCCCChHHHHHHHH
Confidence 111222334566667777777777777544433 3444444333333332 23334
Q ss_pred HHHHhcccCChHHHHHHHHHHHH
Q 043637 483 LLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+-.++...+.++.|+.++..+++
T Consensus 441 l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 441 RMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.22 E-value=4.5e-05 Score=73.54 Aligned_cols=417 Identities=10% Similarity=0.063 Sum_probs=255.0
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--CCcccHHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--RDGGSWNAMLGA 117 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 117 (693)
-.+..++.|.++....+.+.+|.+-|-+ .-|+..|..++.+..+.|.+++-++.+.-..+ +++..=+.|+-+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3456788899999888888877655432 24677888999999999999999998876654 466667889999
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 197 (693)
|++.++..+-.+++ -.|+..-...+..-|...|.++.|+-+|. +..-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHH
Confidence 99999876654443 24677777788888888888888877664 334456677777888888877
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC-C
Q 043637 198 RRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF-E 276 (693)
Q Consensus 198 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 276 (693)
.+.-+. ..++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++...+++.-. |. .
T Consensus 190 VdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glEr 260 (624)
T 3lvg_A 190 VDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLER 260 (624)
T ss_dssp TTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT
T ss_pred HHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc
Confidence 654333 25788999999999999998877655444432 222 23345666888999999888887655 33 3
Q ss_pred CchHHHHHHHHHHHHcCChhHHHhhhcC----CCCC-------CchhHHHHHHHHHhcCCHHHHHHHH------------
Q 043637 277 GDDVVLGSLTEMYVKCGRLEDARGLLDQ----PDER-------NIISWTSIVSGYAISGRIREARELF------------ 333 (693)
Q Consensus 277 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~------------ 333 (693)
....+++-|.-.|+|- +.++..+.++. +.-| ....|..++-.|..-..++.|....
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 5677888888888876 34444443332 2222 4467999999999999999884332
Q ss_pred -hhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc
Q 043637 334 -NEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN 410 (693)
Q Consensus 334 -~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (693)
.++.. .|...|...|..|....- ..--+++.-+. .+.|.. .+++.+.+.+++.....++...+. ..+
T Consensus 340 Fkdii~KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL~---prlDh~---RvV~~~~k~~~LpLIkpYL~~Vq~---~N~ 409 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFYLEFKP-LLLNDLLMVLS---PRLDHT---RAVNYFSKVKQLPLVKPYLRSVQN---HNN 409 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHHTTSCC-TTSHHHHHHHC---TTCCST---TTHHHHHTTTCGGGGTGGGTSCCC---SCC
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhCh-HHHHHHHHhcc---ccCChH---HHHHHHHhcCCchhhHHHHHHHHH---hhH
Confidence 11111 455555555555554321 11111111110 011110 112222333333333332222211 123
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCC------------CChhhHHH-HHHHHHhcCChHHHHHHHHHhhhCCCCCH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQR------------RDKVSWNA-VLTGYARRGQSEEAMTSFSEMQWETRPSK 477 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~p~~ 477 (693)
..+-.++-+.|....+++.-...+. .-.. .+..-+.. -...|.+++++++++++.++=
T Consensus 410 ~aVNeAln~L~IEEEDy~~LR~SId-~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-------- 480 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQALRTSID-AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD-------- 480 (624)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTS-SCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTT--------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH-HhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhc--------
Confidence 4455566677777777665422221 1111 12222222 334566777788777654431
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRNC 507 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 507 (693)
..|.-.|.....+|+.+-+.++++-.++.|
T Consensus 481 klykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 481 SLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 112223445566788888888888777765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00029 Score=53.91 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+...+..+..++...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577888888899999999999999988853 23356678888888999999999998887763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00094 Score=51.36 Aligned_cols=71 Identities=13% Similarity=-0.038 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP---------FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
...++..+.+.|+++.|..++++.. ..+....+..+..++.+.|++++|...++++++++|+++.+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3445555555555555555555432 1223446677777788888888888888888888888777766655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00039 Score=52.98 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HI-TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYC 625 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 625 (693)
....+...|++++|++.+++..+ ..|+ .. .+..+..++...|++++|.+.++++.+. .|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH------
Confidence 45566777888888888888877 4564 45 6777778888888888888888888752 232 222211
Q ss_pred hcCChHHHHHHHHhCC
Q 043637 626 RYGYMKELEDFVNRMP 641 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~~ 641 (693)
+.+.++...+++..
T Consensus 75 --~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 --KMVMDILNFYNKDM 88 (99)
T ss_dssp --HHHHHHHHHHCCTT
T ss_pred --HHHHHHHHHHHHHh
Confidence 45566666665553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0041 Score=46.32 Aligned_cols=70 Identities=7% Similarity=-0.214 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 611 IPQLEHYECMIKLYCRYGY---MKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 611 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+.++..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..++++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3455666666666654443 577777777664 455556666667777777777777777777777777633
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0031 Score=62.64 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh-----cCCCCCcchh
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNE-----LNPWAPFQFK 684 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 684 (693)
.++.++..|..+|++++|+..++++++ +.|++|.+-.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 455556666666666666666666655 3465554433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0053 Score=61.13 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCC---CCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEG---IKPD----HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+..+...|++++|++++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334445556666666666555421 2222 1345555555656666666666655554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0036 Score=50.86 Aligned_cols=72 Identities=6% Similarity=-0.216 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCC--C--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 612 PQLEHYECMIKLYCRYG---YMKELEDFVNRMPFN--P--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 612 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
++..+...+..++++++ +.++++.+|++.... | ....+-.+.-+|.+.|++++|.+.++.+++++|+|..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44444444455555544 333455444444211 1 122333455555666666666666666666666665443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.13 Score=49.02 Aligned_cols=150 Identities=7% Similarity=-0.070 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHH--hcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 441 RDKVSWNAVLTGYA--RRGQ---SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 441 ~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
.+..+|...+++.. ..+. ..+|..+|++.....+-....+..+..++.. ....+.. +....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------------~~~~~~~-~~~~~ 257 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------------RHSQHPL-DEKQL 257 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------HHHHSCC-CHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------HhccCCC-chhhH
Confidence 35666766665533 2222 4678888888776655555666555444430 0001100 00000
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
. ....+.+....+. +.+...|..+...+...|++++|...++++... .|+...|..+...+.-.|+
T Consensus 258 ~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 258 A----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGM 325 (372)
T ss_dssp H----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTC
T ss_pred H----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCC
Confidence 0 1122222222222 667778888887777789999999999999994 5887778777789999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
+++|.+.++++.. +.|...+|..
T Consensus 326 ~~eA~e~~~~Alr---L~P~~~t~~~ 348 (372)
T 3ly7_A 326 NREAADAYLTAFN---LRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHH---HSCSHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCCcChHHH
Confidence 9999999998874 4677776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.053 Score=42.21 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCCCCCCH----HhHHHHHHHHHhcCCccH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE---LEDFVNRMPFNPTV----PMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 664 (693)
.....+.+.+.+.... +. |+..+-..+.+++.++.+..+ ++.++++.....++ ...-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555432 33 777777777888888777665 77777776533212 244456778889999999
Q ss_pred HHHHHHHHhhcCCCCCcchhh
Q 043637 665 GEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~~~~~ 685 (693)
|...++.+++.+|+|..+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999988776544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.32 Score=53.43 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=91.8
Q ss_pred HhcCChHHHHH-HHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 454 ARRGQSEEAMT-SFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 454 ~~~~~~~~a~~-~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
...+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.- ..-.......|++++|+
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHH
Confidence 34566666655 33211 11122255555666666666666544211 11133456778999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 533 RVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
++.+.+ .+...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++-+..... |.
T Consensus 673 ~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~-- 738 (814)
T 3mkq_A 673 DLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-GK-- 738 (814)
T ss_dssp HHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC--
T ss_pred HHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc--
Confidence 888766 4567889999999999999999999988755 334444445566666655555444431 21
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.....+|.+.|++++|++++.++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2333445666677777777766664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.38 Score=40.15 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=81.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
+.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 4566788888888888888888888877554 3444455556677666655
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+-+....+ | -++.....+.-.|++++++++|.+...-|. -.......|-.+.|.+..+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 55544431 2 134455667778888888888877752111 112223456666777766654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.06 Score=39.91 Aligned_cols=65 Identities=6% Similarity=-0.047 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNER---GREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.++..+..+..++...++ .++|..++++..+ +.|+. .....+...+.+.|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456667777777765544 6889999999888 67754 6666777888899999999999999875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.15 Score=56.07 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHH
Q 043637 283 GSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD 362 (693)
Q Consensus 283 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 362 (693)
..++..+.+.|..++|..+.+.. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 45555666667777666655421 111233456677777777766653 45677777777777888888877
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHH
Q 043637 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSA 430 (693)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 430 (693)
.|.++.. |..+...+...++.+...++-+.....| -++.-..+|.+.|++++|
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHH
Confidence 7776642 2333334444454444444433333332 122233344455555555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.028 Score=55.81 Aligned_cols=62 Identities=6% Similarity=-0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-----CC-CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK-----EG-IKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+++.+..+|...|++++|+.++++..+ .| -.|+. .+++.|...|..+|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 566677777777777777777766554 11 23333 5677777777777777777777777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.21 Score=38.87 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=26.5
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGI 574 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 574 (693)
-++.+...|+-++-.+++.++. +|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444444444444421 33444444445555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.063 Score=53.38 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=57.7
Q ss_pred HHHHHhhCCHHHHHHHHhcCC--------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCh-HH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS--------SLD---VIICNSMILGFCHNERGREALEVFGLMKKE-----G-IKPDH-IT 580 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~ 580 (693)
+..+.+.|++++|+.++++.. +.+ ..+++.++.+|...|++++|+.++++.++- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445566778888877776432 112 236777778888888888888888776641 1 22332 55
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777777776653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.40 E-value=3.8 Score=44.39 Aligned_cols=248 Identities=10% Similarity=-0.054 Sum_probs=130.6
Q ss_pred HHHHcCChHHHHHHHHhhcCC---CChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCC--------CCHH--HHHHHH
Q 043637 420 MYRKCGNLRSARIWFYQMSQR---RDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETR--------PSKF--TFETLL 484 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~---~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------p~~~--~~~~ll 484 (693)
+....|+.++++..+.+.+.. .+.. .-..+.-+....|..+++.+++........ +... ....|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667888888888887763 2222 223344456667776778877776543221 1111 122333
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHH--HHHHHHHhhCCHHHHHHHHhcCC-CCCHHHH--HHHHHHHHhCCCh
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRG--ALVEVYTKCCCLEYAIRVFKESS-SLDVIIC--NSMILGFCHNERG 559 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~ 559 (693)
.++.-.++ +++...+..+....-. ...... ++...+.-.|+-+-...+++.+. ..+.... -.+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 33444444 3444444444432211 111122 23334455677666666665433 2232333 3334445578888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFH---GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.+..+++.+... -.|. .-|. .+.-+|+..|+.....+++..+.. ....+..-...+.-++.-.|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888873 1222 2333 344678889998777778888875 3333344333444455567777767777
Q ss_pred HHhCCCCCCHHhHHHHHHHHH--hcCC-ccHHHHHHHHHh
Q 043637 637 VNRMPFNPTVPMLRKIFDKCR--KNGY-ATLGEWAARRLN 673 (693)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~~~~--~~g~-~~~A~~~~~~~~ 673 (693)
++.+....++..-.....++. ..|+ ..++...++.+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 765553344443222222222 2333 256666666664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=1.2 Score=40.66 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred CCHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhC--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhc-
Q 043637 526 CCLEYAIRVFKESSSLDVI--ICNSMILG-FCHN--ER------GREALEVFGLMKKEGIKPD---HITFHGILLACIH- 590 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~--~~~~l~~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~- 590 (693)
++..+-.+.+.+..+.++. .|...+.+ +... |+ ...|...+++..+ +.|+ -..|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 4444455556666544433 56655543 2332 33 5677888888888 7887 3578888888887
Q ss_pred ----cCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CChHHHHHHHHhCC-CCCCH-HhHHHHHHHHHhcCC
Q 043637 591 ----EGNVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRY-GYMKELEDFVNRMP-FNPTV-PMLRKIFDKCRKNGY 661 (693)
Q Consensus 591 ----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~ 661 (693)
-|+.++|.+.|++..+ +.| +..++..+.+.+++. |+.++|.+.+++.. .+|.. |. ..+.+..++
T Consensus 213 Pp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-~~lan~~~q--- 285 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-NKLLVILSQ--- 285 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-CHHHHHHHH---
T ss_pred CCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-hhHHHHHHH---
Confidence 4899999999999985 344 366777788888884 99999999998875 23332 22 234444433
Q ss_pred ccHHHHHHHHH
Q 043637 662 ATLGEWAARRL 672 (693)
Q Consensus 662 ~~~A~~~~~~~ 672 (693)
.+|...++++
T Consensus 286 -~eA~~LL~~~ 295 (301)
T 3u64_A 286 -KRARWLKAHV 295 (301)
T ss_dssp -HHHHHHHHTH
T ss_pred -HHHHHHHHHh
Confidence 2455555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.18 E-value=4.4 Score=43.88 Aligned_cols=307 Identities=13% Similarity=0.029 Sum_probs=145.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--CcccH----HHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC---H-hhHH-HHHH
Q 043637 318 SGYAISGRIREARELFNEMPER--NVISW----NAMLAGYTRSLLWKEALDFVFLMRKTTK--DID---Q-VTLG-LILN 384 (693)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~---~-~~~~-~ll~ 384 (693)
-+....|+.++++.++...... +...+ ..+.-+....|..+++..++.......- .-+ . .... .+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456677777888887776541 11111 2223344555655667776666554321 000 1 1111 1111
Q ss_pred HHhcccc-hhhHHHHHHHHHHhCCCCchhHHH--HHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHH--HHHHHhcCCh
Q 043637 385 VCAGLSE-IKMGKEVHGFIHRNDYSSNIFVSN--ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAV--LTGYARRGQS 459 (693)
Q Consensus 385 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~ 459 (693)
+....|. -+++...+..+....- ....... ++...+.-.|+.+....++.......+......+ .-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222232 1234444444443221 1111111 2222333445555554444443333232232223 3344567888
Q ss_pred HHHHHHHHHhhhCCCCCHHHH--HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 460 EEAMTSFSEMQWETRPSKFTF--ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
+.+..+++.+.....|....- ..+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888888776543333322 244557888899888888888887642 22333333333344445665556666654
Q ss_pred CC-CCCHHHHH--HHHHHHHhCCCh-HHHHHHHHHHHHCCCCCChHHHHHHH--HHHhccC-------cHHHHHHHHHHh
Q 043637 538 SS-SLDVIICN--SMILGFCHNERG-REALEVFGLMKKEGIKPDHITFHGIL--LACIHEG-------NVKLALQFFDSM 604 (693)
Q Consensus 538 ~~-~~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g-------~~~~A~~~~~~~ 604 (693)
+. ..|+.+-. .+.-+....|+. .++..++..+.. .+|..+-...+ -+..-.| ++...++.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 44 33444333 333444445543 677888888875 45543322222 2222222 233333433333
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 605 RCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 605 ~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
..+..-.++...-..+..+....|.
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HhcccccHHHHHHHHHHHHHHhcCC
Confidence 3211223444555556666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.13 Score=41.76 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEG---NVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 633 (693)
...+.+-|.+..+.| .++..+...+.+++++++ +.++++.++++..++ . .| +.+.+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666665654 366777777777888877 666888888888753 2 34 355666777788888888888
Q ss_pred HHHHHhCC
Q 043637 634 EDFVNRMP 641 (693)
Q Consensus 634 ~~~~~~~~ 641 (693)
++.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.15 Score=38.74 Aligned_cols=60 Identities=5% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYG-----IIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+..+...+...|+++.|...++.+.+... -.+...++..|..+|.+.|++++|+..++++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444555555555555555555543210 1123444555555555555555555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.33 Score=39.71 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHhHHHHHH
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMPFNP-TVPMLRKIFD 654 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~ 654 (693)
+.-..+..+|.+.|++++|+.+++.++.+. ++.+-..|..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 444557788888888888888888886433 3333333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=1.8 Score=33.87 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRM-P-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+.+.....+..+...|+.++-.+++..+ . .+++++.+-.+..+|.+-|+..+|.+.++++=+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445566667777888888888888873 3 456778888888888888888888887777644
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.44 E-value=0.44 Score=37.79 Aligned_cols=73 Identities=8% Similarity=-0.137 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 611 IPQLEHYECMIKLYCRYGYMK---ELEDFVNRMP-FNP--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 611 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
.|+..+-..+.+++.++.+.+ +++.++++.. ..| ....+-.+.-++.+.|++++|.+..+.+++.+|+|.++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 345555555555555554433 3444444442 111 122333455566677777777777777777777665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.73 Score=41.96 Aligned_cols=71 Identities=10% Similarity=-0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCC--CC
Q 043637 544 IICNSMILGFCHN-----ERGREALEVFGLMKKEGIKPD--HITFHGILLACIHE-GNVKLALQFFDSMRCKYGII--PQ 613 (693)
Q Consensus 544 ~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~--p~ 613 (693)
..|..+...|.+. |+.++|.+.|++.++ +.|+ ..++......++.. |+.+++.+.+++... .... |+
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~-a~p~~~P~ 276 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA-IDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-CCGGGCSS
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCCCCC
Confidence 3666777777774 889999999999988 6774 67777777888774 889999999998885 3444 44
Q ss_pred hhHH
Q 043637 614 LEHY 617 (693)
Q Consensus 614 ~~~~ 617 (693)
....
T Consensus 277 ~~la 280 (301)
T 3u64_A 277 NKLL 280 (301)
T ss_dssp CHHH
T ss_pred hhHH
Confidence 4433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.80 E-value=3.7 Score=34.21 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=79.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
..|+++.|.++.+.+ -+...|..|.+...+.|+++-|.+.|......+ .+.--|...|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-----KLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----HHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-----HHHHHHHHhCCHHHHHHHHHH
Confidence 456666666665544 256677777777788888888888777665433 333344556676666655555
Q ss_pred HHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 569 MKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
....| -++.....+...|+++++.+++.+.- .-| .-+......|-.+.|.++.+++.
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 55543 24555567778899999999987653 212 11122223677788888888775
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.59 E-value=6.7 Score=36.66 Aligned_cols=168 Identities=12% Similarity=0.033 Sum_probs=103.7
Q ss_pred hHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCHHhHHHHHHHhc
Q 043637 180 LESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMF----FKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 180 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +-+.+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666678888999998876432 34566677776666554 55567789999888888888877
Q ss_pred CCCCcc-hhHHHHHHH----HHhc--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHH
Q 043637 256 FLSSPY-EGMQIHGVI----IKID--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 256 ~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (693)
.....+ .-..+.+.+ .+.| ..-|......+...|.+.+++.+|..-|--...++...+..++..|...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655422 122333333 3334 345677888888999999999999888753333334566655555544443221
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 329 ARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 329 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
+ +...-. .+-.|...++...|..+++...+
T Consensus 186 ~----------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A----------PLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H----------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----------HHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 111112 23345566777777776665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.33 Score=37.91 Aligned_cols=72 Identities=8% Similarity=-0.136 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 612 PQLEHYECMIKLYCRYGYMK---ELEDFVNRMP-FNP--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 612 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
|++.+--.+.++++++.+.+ +++.++++.. ..| ....+-.+.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34444444445555544332 3344444332 111 122333455556666666666666666666666665543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=12 Score=38.81 Aligned_cols=252 Identities=9% Similarity=0.049 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS 492 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 492 (693)
.-+..+..+.+.+++..... +... ...+...-.....+....|+..+|......+-..+......+..++..+...|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~-~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLA-FSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHH-hccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 33445555666666666644 2222 222333334455666667777777776666655554444455555555554443
Q ss_pred hHH--HHHHHHHHHHhC-----------CCcch-hHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH---HHHHHHHHHHh
Q 043637 493 LEQ--GKQIHCFVIRNC-----------YEINV-VCRGALVEVYTKCCCLEYAIRVFKESSSLDVI---ICNSMILGFCH 555 (693)
Q Consensus 493 ~~~--a~~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~ 555 (693)
... ..+=+..+...| +.++. .....++..+.+-. .+....... .++.. .+...+.-+.+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 221 111111111111 11111 11122222222221 222222221 12221 12222233333
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEG-IKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.+.+.|...+......+ +.+.. ..+..+.......+...++...+..... ..++.......++...+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37899999998886543 22222 2333344455556634566666666542 23455455666677778899999
Q ss_pred HHHHHHhCCCCC-C-HHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 633 LEDFVNRMPFNP-T-VPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 633 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
|...|+.|...+ + ....--+..+....|+.++|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999997432 2 22222355677788999999999999875
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.59 Score=38.24 Aligned_cols=134 Identities=5% Similarity=-0.099 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEG-IKPDH-------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE-HY 617 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~ 617 (693)
-.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.......-+... ..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334556666777777766666544311 12331 2445555677777777777777777643222212111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
..+. ....... -+ ....+...--.+...|.+.|+.++|...++.+-... ..|.....||++|-
T Consensus 104 ~~~~---~~ss~p~----s~---~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 104 PSTG---NSASTPQ----SQ---CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLYK 166 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHCC
T ss_pred cccc---ccCCCcc----cc---cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHhc
Confidence 1110 0000000 00 011223333446777788999999999887653322 36678888888874
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.66 Score=49.12 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
..-|...|+++-|+++-++... +.|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567778888888888777 56754 77778888888888888888777765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.96 E-value=10 Score=37.56 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC----h
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE--GIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKY-GIIPQ----L 614 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~p~----~ 614 (693)
....|...+...|++.+|..++.++... |..+. ...+..-++.|...+++.+|..++.++..+. ...++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888889999999988887642 22222 1345555688999999999999998874311 22222 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+...+..+...+++.+|-+.|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34667778888899999888777655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.90 E-value=3.2 Score=33.24 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch
Q 043637 122 GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNV 178 (693)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 178 (693)
+++++|.++|+.+++.+-.. ...|..-.+.=.+.|++..|.+++...+..+..|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 57777777777776543222 555555556666788899999999888887755544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.73 E-value=1.5 Score=39.30 Aligned_cols=127 Identities=12% Similarity=0.045 Sum_probs=82.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
....+.|++++|++.+..-++. .| |...-..|+..+|-.|++++|.+-++...+ +.|+...-..+.+.++++-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 4567889999999988888774 56 556667777999999999999999998864 34554322222222222211
Q ss_pred hHHHHHHHHhCC---C-CCCHHhHHHHHHHHH--hcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 630 MKELEDFVNRMP---F-NPTVPMLRKIFDKCR--KNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 630 ~~~A~~~~~~~~---~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
..+ ++|.--. . ....+....++.+.. ..|+.++|...-..+++.-|..+++.+
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 111 2332111 1 223344455555554 469999999999999999998776543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.32 E-value=9.1 Score=35.50 Aligned_cols=167 Identities=8% Similarity=0.000 Sum_probs=101.4
Q ss_pred hHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCHHhHHHHHHHhc
Q 043637 180 LESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVM----FFKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 180 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.+.+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666677888888888875432 3455667777666664 455566789999888888887776
Q ss_pred CCCCcc-hhHHHHHHHHHh----c--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhc---CC
Q 043637 256 FLSSPY-EGMQIHGVIIKI----D--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAIS---GR 325 (693)
Q Consensus 256 ~~~~~~-~a~~~~~~~~~~----g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~ 325 (693)
.....+ .-.++.+.+.+. | ...+......+...|.+.|++.+|+..|--....+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 643222 223444444433 3 2346778888889999999999888877633333455555555555444 44
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMR 368 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 368 (693)
..++- + ..-. .+-.|...++...|..+|+...
T Consensus 184 ~~e~d-l---------f~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVA-E---------FFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH-H---------HHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHH-H---------HHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33321 1 1111 1223445667777777776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.85 E-value=14 Score=36.71 Aligned_cols=253 Identities=8% Similarity=-0.021 Sum_probs=130.1
Q ss_pred CccHHHHHHHHHHHHHh-----CCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHH----HhCC
Q 043637 55 SKAIVEARKLESNLVTF-----YPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAY----TQNG 122 (693)
Q Consensus 55 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~~ 122 (693)
.|++..|.+.+-.+.+. +......+...++..|...|+++...+.+..+... -..+-..+++.+ ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777666543 23334566777888888889998886665544322 122223333322 2222
Q ss_pred Chhh--HHHHHHHhhh--CC-CCC---CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-----hhhHhHHHHHhh
Q 043637 123 FPGR--TLELFLDMNH--SG-VSA---NQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGN-----VILESSLVDAYG 189 (693)
Q Consensus 123 ~~~~--a~~~~~~m~~--~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~ 189 (693)
..+. -+.+.+.... .| +.. .......|...+...|++.+|..++..+...-...+ ...+..-+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1222222211 11 111 112234566677778888888888887754321121 245666677777
Q ss_pred cCCCHHHHHHHHhccCC------CC----cccHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCHHhHHH----HHHHh
Q 043637 190 KCMVMTDARRMFDDIQN------KN----AVSWNVIVRRYLVAGNGKEAVVMFFKMLRE-DIRPLNFTFAN----ALFAC 254 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~----ll~~~ 254 (693)
..+++..|..++..+.. ++ ..-+...+..+...+++.+|...|.+.-.. .+.-|...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88888888777766531 11 122556666777778888887777766431 11112222211 11111
Q ss_pred cCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc--CChhHHHhhhcCCCC
Q 043637 255 SFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKC--GRLEDARGLLDQPDE 307 (693)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 307 (693)
.-.+....-.++..........++...+..++.+|... .+++.+...|.....
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 11222222233333333333334556667777776654 345555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.95 E-value=2 Score=33.38 Aligned_cols=79 Identities=9% Similarity=-0.045 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL---ALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
..+.+-+.+....| .|+..+-..+.+++.++..... ++.+++.+.. ...| .......|.-++.+.|++++|+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555444443 2666666667777777766555 7777777664 2223 3444556667777888888888
Q ss_pred HHHHhCC
Q 043637 635 DFVNRMP 641 (693)
Q Consensus 635 ~~~~~~~ 641 (693)
+.++.+.
T Consensus 95 ~~~~~lL 101 (126)
T 1nzn_A 95 KYVRGLL 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.92 E-value=1.8 Score=31.74 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
.=+..+-++.+....+-|++......+++|.+.+++..|.++++-++.+ +.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 3455666777777778899999999999999999999999999988764 3444556766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=2.7 Score=40.92 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHYEC 619 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 619 (693)
...++..+...|++++|...+..+.. ..| +...+..++.++.+.|+..+|++.|+.+.+ +.|+.|.+.+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34567778888999999998888887 456 667888999999999999999999888643 4699998875433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.28 E-value=8.7 Score=30.83 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
++.++|.++|+.+.+.+-.. ...|.....--.++|+...|.+++...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 67778888888776643233 55566666666778888888888888874
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.45 E-value=3.4 Score=30.30 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=33.3
Q ss_pred hhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 26 LTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
+.+.+..+...+..|++....+.|++|.|-+++..|.++++.++..- .+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33444455556666666666666666666666666666666665331 122334555544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.35 E-value=15 Score=31.43 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHh
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQ 120 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 120 (693)
+...-...+..+...|.......+.+.+ + .++..+-...+.+++..|..+....+.+.+..++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444444455555444432222222222 1 34555555556666666655444444444555555555555555555
Q ss_pred CCCh
Q 043637 121 NGFP 124 (693)
Q Consensus 121 ~~~~ 124 (693)
.++.
T Consensus 103 ~~~~ 106 (201)
T 3ltj_A 103 IGDE 106 (201)
T ss_dssp HCCG
T ss_pred hCcH
Confidence 5543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.30 E-value=14 Score=39.11 Aligned_cols=55 Identities=5% Similarity=-0.142 Sum_probs=44.1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 150 LRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
.+.|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345566788888888888887764 4456788999999999999999998888887
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.93 E-value=8 Score=28.23 Aligned_cols=80 Identities=8% Similarity=0.034 Sum_probs=59.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 043637 156 ELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKM 235 (693)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 235 (693)
....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-..++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778888777777663 33333444566788999999999999999999999887765 4567777777777777
Q ss_pred HHCC
Q 043637 236 LRED 239 (693)
Q Consensus 236 ~~~g 239 (693)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.24 E-value=7.5 Score=28.31 Aligned_cols=86 Identities=8% Similarity=-0.027 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 043637 157 LELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236 (693)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 236 (693)
...++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778878777777663 33333444566788999999999999999999999887765 46788888888777887
Q ss_pred HCCCCCCHHhH
Q 043637 237 REDIRPLNFTF 247 (693)
Q Consensus 237 ~~g~~p~~~~~ 247 (693)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 3433333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.13 E-value=28 Score=33.57 Aligned_cols=127 Identities=11% Similarity=-0.045 Sum_probs=55.7
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHH-hCCCc---chhHHHHHHHHHHhh-CCHHHHHHHHhcCC-----CCCHH----
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIR-NCYEI---NVVCRGALVEVYTKC-CCLEYAIRVFKESS-----SLDVI---- 544 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~~~~---- 544 (693)
....+...|...|+.++...++...+. .+.-+ .......+++.+... +..+.-.++..+.. ..-..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555443 11111 223344455544432 22222223322222 00111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--h---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD--H---ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.=..++..|...|++.+|.+++.++.+.=-..| . ..+..-+..|...+++.++...+....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111345555566666666555555544211111 1 123333355555566666665555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.20 E-value=26 Score=32.44 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHH----HHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 043637 315 SIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD----FVFLMRKTTKDIDQVTLGLILNVCAGLS 390 (693)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 390 (693)
++..-|.+.+++++|++++..- ...+.+.|++..|.+ +.+-..+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4455555566666776665432 334556677665555 4566667788999888888887765533
Q ss_pred chh-hHHHHHHHHH----HhCC--CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhc---CChH
Q 043637 391 EIK-MGKEVHGFIH----RNDY--SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARR---GQSE 460 (693)
Q Consensus 391 ~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 460 (693)
..+ .-.++.+.++ +.|- ..+......+...|.+.|++.+|+..+- .....+...+..++.-+... |...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 211 2234444444 3332 2467788888889999999999866554 22212344444444433333 3333
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
++--.+- ..++ .|.-.++...|..+++...+
T Consensus 186 e~dlf~~-------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 186 TVAEFFS-------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHH-------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHHH-------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3211111 1222 23346778888877776554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.58 E-value=4.8 Score=31.34 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
+..+-++.+....+-|++......+++|.+.+|+..|.++|+-++.| ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45566677777778899999999999999999999999999988764 4455666776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=7.1 Score=37.98 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-----hCCCcchhHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-----NCYEINVVCRG 516 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 516 (693)
.++..+...|++++++..+..+....+-+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455666777777777777777666566777888888888888888888887777654 57887776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.04 E-value=8.6 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 561 EALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+++.+++++...+ |. ...+..|.-++.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555554432 31 2333334455555555555555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.96 E-value=30 Score=39.32 Aligned_cols=161 Identities=8% Similarity=0.036 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
..++..+.+.+..+-+ ..+....+. +...--.+..++...|++++|.+.|++....-...... .....
T Consensus 816 ~~l~~~l~~~~~~~~~-~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------~~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNAC-MQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------FAVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHH-HHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS----------CSSHH
T ss_pred HHHHHHHHHhhhHHHH-HHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh----------hhhhc
Confidence 3455556666666666 333333333 22222344566777888888888887753211000000 00000
Q ss_pred HHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhCCChHHHHH
Q 043637 495 QGKQIHCFVIRN--CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLD----VIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 495 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
. +..+... ....-..-|..++..+.+.+.++.+.++-+... +.+ ...|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0011110 001112234455555555555555544443221 111 1146666666667777777766
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 565 VFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 565 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
.+-.+.+... -...+..|+..++..|.
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 6666655322 23445555554444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.24 E-value=7.3 Score=30.37 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCCCChhHHHHHHHHhh-cCc-cHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCC---CCCccc
Q 043637 36 SDEPVSYSLYAHLFQLCA-SSK-AIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMP---ERDGGS 110 (693)
Q Consensus 36 ~~~~~~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 110 (693)
++..-+...|..=-..+. +.. |.-+.++-++.+...+.-|++.+..+.+++|.+-+++..|.++|+.++ .+....
T Consensus 45 ~h~~Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~i 124 (152)
T 2y69_E 45 HGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEI 124 (152)
T ss_dssp ----CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTH
T ss_pred CCCCCcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhh
Confidence 334456666666555555 334 566788888888888999999999999999999999999999998875 234556
Q ss_pred HHHHHHHH
Q 043637 111 WNAMLGAY 118 (693)
Q Consensus 111 ~~~li~~~ 118 (693)
|..+++-+
T Consensus 125 Y~y~lqEl 132 (152)
T 2y69_E 125 YPYVIQEL 132 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.96 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.79 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.98 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.85 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.59 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.58 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.5 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.88 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.51 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.08 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.07 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.19 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2e-21 Score=193.81 Aligned_cols=367 Identities=10% Similarity=-0.001 Sum_probs=265.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhh
Q 043637 318 SGYAISGRIREARELFNEMPE--R-NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKM 394 (693)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 394 (693)
..+.+.|++++|.+.++++.+ | +...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 344445555566655555543 2 33455555666666666666666666665542 1134455555566666666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 043637 395 GKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE 472 (693)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 472 (693)
|...+....+... .+..............+....+......... .................+....+...+......
T Consensus 86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 6666666655442 2222333333333333433333233222222 233444455555666677777777777776665
Q ss_pred CCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHH
Q 043637 473 TRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSM 549 (693)
Q Consensus 473 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 549 (693)
.+.+...+..+...+...|+++.|...++...+..+. +...+..+...+...|++++|...+++.. +.+...+..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 5666777788888888888999998888888876543 56677788888889999999988888765 5667788889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 628 (693)
...+.+.|++++|+..|++..+ +.|+ ..++..+...+...|++++|.+.++.... ..+.+...+..+..++.+.|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCC
Confidence 9999999999999999999999 6775 57888899999999999999999999985 45667788899999999999
Q ss_pred ChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 629 YMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 629 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++++|+..+++.. .+.++..+..++..+...|++++|...++++++++|+++.++..||++|.
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999875 34567788899999999999999999999999999999999999999884
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4e-19 Score=176.85 Aligned_cols=368 Identities=10% Similarity=0.013 Sum_probs=261.2
Q ss_pred HHHHcCChhHHHhhhcCCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCCHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDE--R-NIISWTSIVSGYAISGRIREARELFNEMPE--R-NVISWNAMLAGYTRSLLWKEAL 361 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 361 (693)
.+.+.|++++|.+.++++.+ | +...+..+..++.+.|++++|...|+...+ | +..+|..+...+...|++++|+
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 34455566666655555432 2 334555556666666666677777766554 3 3456777788888888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-C
Q 043637 362 DFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-R 440 (693)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 440 (693)
..+....+.... +..............+................ .................+....+...+..... .
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC
Confidence 888887775433 22233333333334444444444444443333 23333444455556666666666566555544 2
Q ss_pred C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 043637 441 R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV 519 (693)
Q Consensus 441 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 519 (693)
| +...+..+...+...|++++|...+++.....+.+...+..+...+...|++++|...++........ ....+..+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 244 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLA 244 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHH
Confidence 3 45667778888888999999999998887666667778888888899999999999999888886544 556677788
Q ss_pred HHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL 596 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 596 (693)
..+.+.|++++|...+++.. +.+..+|..+...+...|++++|++.++..... .+.+...+..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHH
Confidence 88999999999999998764 556778889999999999999999999988884 23356778888899999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCC
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGY 661 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 661 (693)
|++.++++.+ -.+-++..+..++.+|.+.|++++|+..|++.. .+.+...+..++.++.+.||
T Consensus 324 A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999874 233356778889999999999999999998774 34456788889888888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.2e-14 Score=136.82 Aligned_cols=251 Identities=12% Similarity=-0.043 Sum_probs=150.3
Q ss_pred HHHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQG 496 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 496 (693)
..+.+.|++++|+..+.+.+.. | +..+|..+...+...|++++|...|.+.....+-+...+..+..++...|++++|
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3444555555555555554432 2 3344555555555555555555555554443333444444445555555555555
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 043637 497 KQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP 576 (693)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 576 (693)
.+.++.+........ .......... ...+.......+..+...+.+.+|.+.+.+..+ +.|
T Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~p 167 (323)
T d1fcha_ 107 CEILRDWLRYTPAYA-HLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDP 167 (323)
T ss_dssp HHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH--HST
T ss_pred ccchhhHHHhccchH-HHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH--Hhh
Confidence 555554444221100 0000000000 000011111122334455667888888888877 344
Q ss_pred ---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHH
Q 043637 577 ---DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRK 651 (693)
Q Consensus 577 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 651 (693)
+...+..+...+...|++++|+..+++.... .+-+...|..++.+|.+.|++++|++.+++.. .+.+...+..
T Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 245 (323)
T d1fcha_ 168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245 (323)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence 3567778888999999999999999998752 33457788899999999999999999999875 4556778889
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 652 IFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
++.+|...|++++|+..++++++++|+++.....++.++
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 999999999999999999999999999887766555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.8e-12 Score=124.42 Aligned_cols=210 Identities=11% Similarity=-0.064 Sum_probs=150.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCC
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCC 527 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 527 (693)
.....+.+.|++++|+..|+++.+..+-+..++..+..++...|+++.|...+.+..+..+.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------------ 85 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------------------ 85 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc------------------
Confidence 34556677777777777777777665556667777777777777777777777766664332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH----------------HHHHHHHHHhcc
Q 043637 528 LEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI----------------TFHGILLACIHE 591 (693)
Q Consensus 528 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------~~~~l~~~~~~~ 591 (693)
+...|..++..+...|++++|.+.+++... +.|+.. .....+..+...
T Consensus 86 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (323)
T d1fcha_ 86 --------------NQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 149 (323)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHHHH
T ss_pred --------------cccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHHh
Confidence 333444445555555555555555555544 222211 111122344556
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
+.+.+|.+.++++.+.....++...+..+...+...|++++|+..+++.. .+.+...|..++..+...|++++|...+
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHH
Confidence 77888999999887643445567788899999999999999999999874 4566788999999999999999999999
Q ss_pred HHHhhcCCCCCcchhhhhhccc
Q 043637 670 RRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 670 ~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+++++++|+++.++..+|.+|.
T Consensus 230 ~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 230 RRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999999874
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=6e-11 Score=113.87 Aligned_cols=230 Identities=6% Similarity=-0.108 Sum_probs=170.4
Q ss_pred hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 455 RRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS--SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 455 ~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
..|++++|+..++......+-+...+..+..++...+ +.+++...+.++.+...+.....+......+...+..++|+
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 3455677888888877666666666666665555544 57888888888888655433333445556777889999999
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 533 RVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 533 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
..++... +.+...|+.+...+...|++++|...+.+..+ +.|+. ......+...+..+++...+..... .
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~ 237 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL--G 237 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--S
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH--h
Confidence 9999877 55677899999999999999888776666555 33332 1223344556667778888887764 4
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 610 IIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 610 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
.+++...+..++..+...|+.++|...+.+.. ..| +...+..++..+...|++++|...++++++++|.+...|..|+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 44556666777888889999999999998776 233 4557788889999999999999999999999999999999888
Q ss_pred hccc
Q 043637 688 NRFD 691 (693)
Q Consensus 688 ~~y~ 691 (693)
+.+.
T Consensus 318 ~~~~ 321 (334)
T d1dcea1 318 SKFL 321 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=7.6e-10 Score=101.70 Aligned_cols=198 Identities=7% Similarity=-0.110 Sum_probs=128.4
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC 554 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 554 (693)
.++..+..++.+.|++++|...|++.++..+. ++..+..+..+|.+.|++++|+..|+++. +.+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 35556666777777777777777777775544 56667777777888888888888887766 445667888889999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CC
Q 043637 555 HNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY----GY 629 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~ 629 (693)
..|++++|...+++..+ ..|+ ......+..++.+.+..+.+..+...... ..++...+. ++..+... +.
T Consensus 117 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHH
Confidence 99999999999999988 4564 34444444555666665555555555542 222222222 22222222 22
Q ss_pred hHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 630 MKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 630 ~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+.+...+.... . +.....+..++..+...|++++|...++++++.+|++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 222222222111 1 1223356678889999999999999999999999977543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=5.5e-10 Score=105.25 Aligned_cols=208 Identities=7% Similarity=-0.073 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC-CHHHHHHHHhcCC---CCCHHHHHHHHHH
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC-CLEYAIRVFKESS---SLDVIICNSMILG 552 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~ 552 (693)
...++.+...+.+.+..++|.+.++++++.++. +...|+....++...| ++++|+..++... +.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 456667777788889999999999999997655 6677788888888876 5899999999876 6678899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC--
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY-- 629 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 629 (693)
+.+.|++++|++.++++.+ +.|+ ...|..+...+...|++++|++.++++++. .+-+...|..+..++.+.|.
T Consensus 122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 9999999999999999999 6775 688999999999999999999999999862 33456677777777666555
Q ss_pred ----hHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc--chhhhhhcc
Q 043637 630 ----MKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF--QFKITTNRF 690 (693)
Q Consensus 630 ----~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~y 690 (693)
+++|+..+.++. .+.+...|..+...+... ..+++...++.+.+++|+... .+..++.+|
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 578888887764 456777888777776655 478999999999999986543 344555555
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=5.2e-09 Score=98.42 Aligned_cols=223 Identities=7% Similarity=-0.030 Sum_probs=145.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
+++.+...+.+.+.+++|++.++++....+-+...|.....++...| ++++|...++.+.+..++ +...|..+..++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 45555566667777777777777777766666677777777766655 477777777777776554 5667777777777
Q ss_pred hhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc------Cc
Q 043637 524 KCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE------GN 593 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~------g~ 593 (693)
+.|++++|+..++++. +.+...|..+...+...|++++|++.++++++ +.|+ ...|+.+...+.+. +.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchhhh
Confidence 7888888888877766 55677888888888888888888888888888 5664 46666655554433 34
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHh--cCCccHHHH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRK--NGYATLGEW 667 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~--~g~~~~A~~ 667 (693)
+++|++.+.++.+ -.+.+...|..+...+...| .+++...++... ...+...+..+...|.. .+..+.+..
T Consensus 202 ~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 202 LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6788888888774 23335566666655554433 455555554332 23344455556665543 244444444
Q ss_pred HHHHHh
Q 043637 668 AARRLN 673 (693)
Q Consensus 668 ~~~~~~ 673 (693)
.++++.
T Consensus 279 ~~~ka~ 284 (315)
T d2h6fa1 279 ILNKAL 284 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=2.2e-08 Score=94.12 Aligned_cols=186 Identities=10% Similarity=-0.013 Sum_probs=142.9
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC-HHHHHHHHHHHHhCCChHHHHHHHH
Q 043637 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD-VIICNSMILGFCHNERGREALEVFG 567 (693)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (693)
..+.+..++++.++...+.+...+...+..+.+.|+++.|..+++++. +.+ ..+|..++..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456777888888765444466677778888888999999999998765 223 3478888999999999999999999
Q ss_pred HHHHCCCCC-ChHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 043637 568 LMKKEGIKP-DHITFHGILL-ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP---- 641 (693)
Q Consensus 568 ~m~~~g~~p-~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 641 (693)
++.+. .| +...|..... -+...|+.+.|..+|+.+.. ..+.++..+..++..+.+.|+.++|..+|++..
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99884 44 3344444443 23456889999999999986 345567788899999999999999999999863
Q ss_pred CCC--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 642 FNP--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 642 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+| ....|...+..-...|+.+.+..+++++.+..|++..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 122 2457888888878899999999999999999887643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3.6e-07 Score=87.85 Aligned_cols=57 Identities=9% Similarity=-0.096 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-----CCCHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET-----RPSKFTFETLLAACANISSLEQGKQIHCFVI 504 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 504 (693)
.+...+...|+++.+...+....... ......+......+...++...+...+....
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 199 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 199 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445555566665555555543221 1222333334444445555555555444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.6e-07 Score=90.40 Aligned_cols=254 Identities=11% Similarity=0.008 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcC----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHhhh----CC---CCC-H
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQ----RRD----KVSWNAVLTGYARRGQSEEAMTSFSEMQW----ET---RPS-K 477 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~p~-~ 477 (693)
+..+..++...|++++|...+.+.+. .++ ...+..+...+...|++..+...+.+... .. .+. .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 33444555555666665555555433 111 12344556667777888877777766532 11 121 2
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHhCC----CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-------CC---CH
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRNCY----EINVVCRGALVEVYTKCCCLEYAIRVFKESS-------SL---DV 543 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~---~~ 543 (693)
..+..+...+...|+++.+...+........ ......+......+...+....+...+.+.. .. ..
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 3555667788899999999999998887432 2233445556667778888888777665432 11 22
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCK---YGIIPQ-LEH 616 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~ 616 (693)
..+..+...+...|+.++|...+++........+ ...+..+..++...|++++|...++.+... .+..|+ ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 3566677788899999999999998776422222 245566778999999999999999988632 233343 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CC----CCHHhHHHHHHHHHhcCCccHHHH
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP-------FN----PTVPMLRKIFDKCRKNGYATLGEW 667 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~~l~~~~~~~g~~~~A~~ 667 (693)
+..+..+|.+.|++++|.+.+++.. .. .....+..++..+...+..+++..
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7788899999999999999998763 10 122334455566666777777754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=9.9e-09 Score=80.04 Aligned_cols=107 Identities=10% Similarity=-0.145 Sum_probs=90.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCC
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGY 661 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 661 (693)
-...+...|++++|+..|+++++ -.+-++..|..+..+|.+.|++++|+..+++.. .+.++..|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 45677888999999999999885 345567778888899999999999999988775 56778889999999999999
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhhhhhcccC
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 692 (693)
+++|...++++++++|+++..+..++++-+|
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~r 117 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999988887543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.7e-07 Score=85.41 Aligned_cols=190 Identities=8% Similarity=-0.120 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK 524 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (693)
+|..+...|.+.|++++|++.|++.....+.+..++..+..++...|++++|...|+++.+..+. +...+..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34445555666666666666666665554555566666666666666666666666666664433 34455556666666
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLA 597 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 597 (693)
.|++++|...++... +.+......+..++.+.+..+.+..+...... ..++...+.. +..+.. .+..+.+
T Consensus 118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNI-VEFYLGNISEQTLMERL 194 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHH-HHHHTTSSCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc--cchhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence 666666666666544 23333333333444444544444444454444 2232222222 122211 1222222
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 598 LQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+..... ..| ....|..+...|...|++++|+..|++..
T Consensus 195 ~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 195 KADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222222211 112 13356667778888888888888887664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=1.2e-06 Score=81.83 Aligned_cols=179 Identities=9% Similarity=0.023 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 460 EEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 460 ~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
++|..+|++..... +.+...+...+......|+.+.|..+++++.+........+|...+....+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444555444332 33333444444444555555555555555554333222334455555555555555555555544
Q ss_pred C---CCCHHHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 539 S---SLDVIICNSMILG-FCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 539 ~---~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
. +.+...|...+.. +...|+.+.|..+|+.+.+. .| +...|...+..+...|+++.|..+|++.....+..|.
T Consensus 161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 3 2233333333322 23345666677777776663 33 3456666666666777777777777776653333433
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 614 --LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 614 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
...|...+..-.+.|+.+.+..+.+++
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 235666666656667777777766655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=4.3e-07 Score=77.74 Aligned_cols=119 Identities=11% Similarity=0.024 Sum_probs=99.6
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLA 597 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 597 (693)
...+...|+++.|++.|.++.+++..+|..+..++...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34567889999999999999889999999999999999999999999999999 6775 57888899999999999999
Q ss_pred HHHHHHhHHhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 598 LQFFDSMRCKYGIIPQ----------------LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..|++... -.+++ ..++..+..+|.+.|++++|.+.+++..
T Consensus 90 ~~~~~kAl~--~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 90 IKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999874 11211 2456677788888899999988887663
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=9.3e-07 Score=81.75 Aligned_cols=194 Identities=6% Similarity=-0.125 Sum_probs=104.2
Q ss_pred HHHhcccCChHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCC----HHHHHHH
Q 043637 484 LAACANISSLEQGKQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLD----VIICNSM 549 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l 549 (693)
...|...+++++|...|.+..+. +- .....+|..+..+|.+.|++++|.+.+++.. ..+ ...+..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34445555555555555555441 11 1123445555666666666666666665433 111 2344555
Q ss_pred HHHHH-hCCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHH
Q 043637 550 ILGFC-HNERGREALEVFGLMKK----EGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL-----EHYE 618 (693)
Q Consensus 550 ~~~~~-~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~ 618 (693)
...|. ..|++++|++.+++..+ .+..+. ..++..+...+...|++++|++.++++.......+.. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55553 35777777777776654 111121 2446666777777888888888887776421111111 1234
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC-CCC------HHhHHHHHHHHHhc--CCccHHHHHHHHHhhcCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPF-NPT------VPMLRKIFDKCRKN--GYATLGEWAARRLNELNP 677 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p 677 (693)
..+..+...|+.+.|...+++... .|. ......++.++... +.+++|...|+++.+++|
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 445556677788888877777641 111 12344455555442 345667666666666665
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.5e-07 Score=73.25 Aligned_cols=107 Identities=7% Similarity=-0.136 Sum_probs=85.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHhCCC-CCCH---HhHHHHHH
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM---KELEDFVNRMPF-NPTV---PMLRKIFD 654 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~~---~~~~~l~~ 654 (693)
..+++.+...+++++|.+.|++... --+.++.++..++.++.+.++. ++|+.+++++.. .|.+ ..+..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4577788888999999999999885 3455678888889998875544 569999988763 2322 25677889
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
+|...|++++|...++++++++|+++.+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999998887776554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=6.2e-08 Score=92.29 Aligned_cols=80 Identities=5% Similarity=-0.099 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
+..+++...+...... .| +...+..+...+...|++++|...+.+... ..+.+...+..++.+|.+.|+.++|++
T Consensus 222 ~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 222 DPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp CSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred cchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344444444444442 22 223334444444445555555555554432 111123344445555555555555555
Q ss_pred HHHhC
Q 043637 636 FVNRM 640 (693)
Q Consensus 636 ~~~~~ 640 (693)
.+++.
T Consensus 298 ~~~~a 302 (334)
T d1dcea1 298 YFSTL 302 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=1.1e-07 Score=82.84 Aligned_cols=95 Identities=9% Similarity=-0.049 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYE 618 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 618 (693)
|+...+......+.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|+..++++. .+.| +...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 4555555666677777777777777777776 4553 4566666677777777777777777765 2344 355666
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.++.+|.+.|++++|+..|+++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777777777777777655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.9e-07 Score=75.53 Aligned_cols=120 Identities=9% Similarity=-0.072 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+......|.+.|++++|+..|++..+ +.|+ ...|..+..+|...|++++|...|+++.+ -.+-+...|..++.+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHH
Confidence 455667788899999999999999988 5675 57788888899999999999999999885 234456788888899
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH--HhcCCccHHHHH
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC--RKNGYATLGEWA 668 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 668 (693)
|...|++++|+..+++.. .+.+...+..+.... ...+.+++|...
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888775 333444444443332 223344455443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.7e-06 Score=73.86 Aligned_cols=128 Identities=12% Similarity=-0.071 Sum_probs=104.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
...+...|+++.|++.|.++ .+|+..+|..+..++...|++++|++.|++.++. .+-++..|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 66778999999999999864 3567788999999999999999999999999862 34457788999999999999
Q ss_pred hHHHHHHHHhCC--CCCC----------------HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 630 MKELEDFVNRMP--FNPT----------------VPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 630 ~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+++|+..|++.. .+++ ...+..+..++...|++++|.+.+++++++.|+.....
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~ 157 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 157 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHH
Confidence 999999988752 1111 23455678888999999999999999999999654433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=6.3e-07 Score=74.95 Aligned_cols=75 Identities=7% Similarity=-0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
+|..+..+|.+.|++++|+..+++.. .+.++..+..++.++...|++++|...++++++++|+|+.....++.++
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666667777777776666554 3445666666666677777777777777777777777666666665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.5e-05 Score=73.31 Aligned_cols=190 Identities=11% Similarity=-0.044 Sum_probs=116.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC----C--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC-----CcchhHHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWE----T--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY-----EINVVCRGA 517 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~----~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 517 (693)
....|...|++++|.+.|.+.... + .....+|..+..+|.+.|++++|...+++..+... ......+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 344555555556655555554221 1 11234566666666667777777776666554211 112334445
Q ss_pred HHHHHHh-hCCHHHHHHHHhcCC-----CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----h-HHH
Q 043637 518 LVEVYTK-CCCLEYAIRVFKESS-----SLD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-----H-ITF 581 (693)
Q Consensus 518 l~~~~~~-~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~~~ 581 (693)
+...|.. .|++++|.+.+++.. ..+ ..++..+...+...|++++|++.++++........ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555543 578888877776654 111 23577889999999999999999999887421111 1 123
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHh--cCChHHHHHHHHhCC
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQ------LEHYECMIKLYCR--YGYMKELEDFVNRMP 641 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 641 (693)
...+..+...|+++.|.+.+++..+ +.|. ......++.++.. .+.+++|+..|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4455677788999999999998864 2232 2244556666655 456899999998876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=5.5e-06 Score=68.28 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=70.8
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCc
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGN 593 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 593 (693)
....|.+.|++++|+..|++.. +.+...|..+..++...|++++|...|++.++ +.|+ ...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcCC
Confidence 3445677788888888877765 56677888888899999999999999999888 5675 4788888889999999
Q ss_pred HHHHHHHHHHhHH
Q 043637 594 VKLALQFFDSMRC 606 (693)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (693)
+++|...++++..
T Consensus 94 ~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 94 FRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=8.5e-06 Score=62.82 Aligned_cols=88 Identities=11% Similarity=-0.059 Sum_probs=53.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 628 (693)
...+...|++++|+..|++.++ ..|+ ...|..+..++...|++++|+..++.+.+ -.+.++..|..++.+|...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHH--hccchhhHHHHHHHHHHHcc
Confidence 4445566666666666666666 3453 35566666666666666666666666664 23345556666666666666
Q ss_pred ChHHHHHHHHhCC
Q 043637 629 YMKELEDFVNRMP 641 (693)
Q Consensus 629 ~~~~A~~~~~~~~ 641 (693)
++++|+..+++..
T Consensus 86 ~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 86 RFEEAKRTYEEGL 98 (117)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.23 E-value=4.2e-06 Score=68.28 Aligned_cols=76 Identities=12% Similarity=-0.065 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+|..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|++++|...++++++++|+|+.+...+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367778899999999999999999875 5667889999999999999999999999999999999998887776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.17 E-value=7.6e-06 Score=68.03 Aligned_cols=73 Identities=7% Similarity=-0.111 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
|..+..+|.+.|++++|+..+++.. .+.+...+..++.++...|++++|...++++++++|+++.....++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4445555555555555555555543 344455555555555555666666666666666666555555544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=3.8e-06 Score=72.67 Aligned_cols=96 Identities=13% Similarity=-0.122 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHH
Q 043637 475 PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMIL 551 (693)
Q Consensus 475 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 551 (693)
|+...+......+...|++++|...|.+.+...+. ++..|..+..+|.+.|++++|+..|++.. +.++.+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 56666666777777777777777777777765543 55556666666666666666666666655 334456666666
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 043637 552 GFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~ 571 (693)
++...|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.08 E-value=0.0017 Score=58.16 Aligned_cols=115 Identities=10% Similarity=-0.144 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cC
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YG 628 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 628 (693)
.....+...+.+.... .+...+..|...+.. ..+...+...++...+ . .+......+...|.. ..
T Consensus 124 ~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCC
T ss_pred chhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccc-c---cccccccchhhhcccCccccc
Confidence 3455666666665552 344555555555543 4556667777766654 1 245555556655554 56
Q ss_pred ChHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCCC
Q 043637 629 YMKELEDFVNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 629 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 678 (693)
+.++|+.+|++....+++..+..|+..|.. ..+.++|...++++.+..+.
T Consensus 197 d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 788888888877666677777777777764 33788888888888777653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=5.7e-06 Score=69.02 Aligned_cols=77 Identities=6% Similarity=-0.193 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...+..+..+|.+.|++++|+..++++. .+.++..|..++.++...|++++|...++++++++|+++.....|..++
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4467778889999999999999998874 4566778999999999999999999999999999999998888887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=1.4e-05 Score=60.93 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=50.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
....+.+.|++++|+..|++... ..|+ ...|..+..++.+.|++++|+..++++.+ -.+.+...+..++..|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence 34455566666666666666666 3453 45555666666666666666666666653 2233455556666666666
Q ss_pred CChHHHHHHHHh
Q 043637 628 GYMKELEDFVNR 639 (693)
Q Consensus 628 g~~~~A~~~~~~ 639 (693)
|+.++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=1.3e-05 Score=61.07 Aligned_cols=86 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCc
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGN 593 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 593 (693)
+...+.+.|++++|...+++.. +.++..|..+..++.+.|++++|+..+++..+ +.|+ ...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence 4556677788888888887766 45677899999999999999999999999999 6775 5888888899999999
Q ss_pred HHHHHHHHHHhH
Q 043637 594 VKLALQFFDSMR 605 (693)
Q Consensus 594 ~~~A~~~~~~~~ 605 (693)
+++|++.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=5.8e-06 Score=60.81 Aligned_cols=75 Identities=13% Similarity=-0.044 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP---------FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
..+..++..+.+.|++++|+.+|++.. ......++..++.++.+.|++++|...++++++++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334466777777777777777776552 11124578889999999999999999999999999999999998
Q ss_pred hhhc
Q 043637 686 TTNR 689 (693)
Q Consensus 686 l~~~ 689 (693)
++.+
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.93 E-value=0.00066 Score=60.94 Aligned_cols=218 Identities=11% Similarity=-0.026 Sum_probs=127.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHH--HHh
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLL--AAC 487 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll--~~~ 487 (693)
+..|...+.+.+++++|++.+++.....+..++..|...|.. ..+...|...+......+.|........+ ...
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~ 84 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 84 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccccc
Confidence 334444555566666666666666555555555555555554 44666666666666555533322111111 112
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH----hhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----CCC
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT----KCCCLEYAIRVFKESS-SLDVIICNSMILGFCH----NER 558 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~ 558 (693)
....+.+.|...++...+.|..... ..+...+. .......|...+.... ..+...+..+...+.. ..+
T Consensus 85 ~~~~~~~~a~~~~~~a~~~g~~~a~---~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 85 GVSQNTNKALQYYSKACDLKYAEGC---ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred ccchhhHHHHHHHhhhhhhhhhhHH---HhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccc
Confidence 2345666777777766665543221 12222222 2344566666665544 5566677777777765 345
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCh
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYM 630 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 630 (693)
...+...++...+.| +......+...+.. .+++++|...|++..+ .| ++..+..|...|.+ ..+.
T Consensus 162 ~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~-~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 162 LKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred cccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc-cc---CHHHHHHHHHHHHcCCCCccCH
Confidence 777788888877754 44555555545543 5689999999998875 34 45566677777765 3478
Q ss_pred HHHHHHHHhCC
Q 043637 631 KELEDFVNRMP 641 (693)
Q Consensus 631 ~~A~~~~~~~~ 641 (693)
++|.++|++..
T Consensus 235 ~~A~~~~~kAa 245 (265)
T d1ouva_ 235 KQAIENFKKGC 245 (265)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0067 Score=55.31 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=26.9
Q ss_pred CCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHH
Q 043637 242 PLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYA 321 (693)
Q Consensus 242 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 321 (693)
||..-...+.+.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+.+.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 444444455555556666666666655332 1334455555555555554444322 12334444444444
Q ss_pred hcCCH
Q 043637 322 ISGRI 326 (693)
Q Consensus 322 ~~g~~ 326 (693)
+....
T Consensus 81 ~~~e~ 85 (336)
T d1b89a_ 81 DGKEF 85 (336)
T ss_dssp HTTCH
T ss_pred hCcHH
Confidence 44333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=9.9e-05 Score=61.09 Aligned_cols=60 Identities=2% Similarity=-0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+|..+..+|.+.|++++|+..++.+++. -+.++..+..++.+|...|++++|+..|++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555566666666666666666541 22345556666666666666666666666553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=9.3e-05 Score=57.80 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-----LEHYEC 619 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~ 619 (693)
+..+...+...|++++|++.|.+.++ +.|+ ...+..+..+|.+.|++++|++.++++.+-..-.+. ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34456677777888888888887777 4554 566777777888888888888888777642111111 124555
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 043637 620 MIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+...+...+++++|+..+++.
T Consensus 85 lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 556666666666666666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.77 E-value=2.4e-05 Score=69.84 Aligned_cols=128 Identities=13% Similarity=-0.037 Sum_probs=92.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYM 630 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 630 (693)
..+.|++++|+..+++.++ ..|+ ...+..+...++..|++++|.+.++...+ ..|+ ...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 4567999999999999999 5774 58888999999999999999999999985 3454 44455555555555555
Q ss_pred HHHHHHHHhCC--CCCCH-HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 631 KELEDFVNRMP--FNPTV-PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 631 ~~A~~~~~~~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
+++..-..... .+|+. ..+......+...|+.++|.+.++++.+..|+.+...+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 55444332221 22222 233334556778899999999999999999988876554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=3.6e-05 Score=59.28 Aligned_cols=88 Identities=9% Similarity=0.031 Sum_probs=36.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEG---NVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLY 624 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 624 (693)
+..+...+++++|.+.|++... +.| +..++..+..++.+.+ ++++|+.+++++... ...|+ ...+..++.+|
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHH
Confidence 3344444444555555555444 233 2344444444444322 223344444444321 11111 12344444455
Q ss_pred HhcCChHHHHHHHHhC
Q 043637 625 CRYGYMKELEDFVNRM 640 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~ 640 (693)
.+.|++++|+..|+++
T Consensus 83 ~~~g~~~~A~~~~~~a 98 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGL 98 (122)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 5555555555555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.014 Score=53.13 Aligned_cols=280 Identities=11% Similarity=0.066 Sum_probs=139.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 043637 308 RNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA 387 (693)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 387 (693)
+|..-.....+-|.+.|.++.|..++..+.. |..++..+.+.+++..|.+.+.+. -+..++..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 4444455566777788888888888887654 777778888888888887777644 14456666666665
Q ss_pred cccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 043637 388 GLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTS 465 (693)
Q Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 465 (693)
.......+ .+.......+......++..|...|.+++....+...+. ..+...++.++..|++.+ .++.++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 55444332 122222333444455667777777777777666666554 234555666666666643 3344444
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHH
Q 043637 466 FSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVII 545 (693)
Q Consensus 466 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 545 (693)
++.... .- ....+++.|...+- |..++-.|.+.|++++|..+.-.-. ++..-
T Consensus 155 l~~~s~--~y---~~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~ 206 (336)
T d1b89a_ 155 LELFWS--RV---NIPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMNHP-TDAWK 206 (336)
T ss_dssp HHHHST--TS---CHHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHHST-TTTCC
T ss_pred HHhccc--cC---CHHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHHcc-hhhhh
Confidence 333211 11 11122333333332 3334555666666666655543322 12222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH-------------HHHhHHhcCCCC
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQF-------------FDSMRCKYGIIP 612 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~p 612 (693)
...++..+.+..+.+...++.....+ ..|+ ..+.++......-+..+..+. ++.... .+
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~--~~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~-~n--- 278 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLE--FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN-HN--- 278 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHH--HCGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT-TC---
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHH--cCHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH-cC---
Confidence 33345555666666655555555444 2342 223444444444444444443 333321 11
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+..+.+++.+.|...++++.-.+.+++-
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 3356677777777777766655555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=8.3e-05 Score=58.09 Aligned_cols=102 Identities=10% Similarity=0.002 Sum_probs=81.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCC-----HHhHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF----NPT-----VPMLR 650 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~ 650 (693)
.+..+...+.+.|++++|+..|++.++ -.+.+...+..+..+|.+.|++++|+..++++.. .+. ..++.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677889999999999999999986 2345688899999999999999999999998741 111 13566
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.++..+...+++++|...+++.+..+| ++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 116 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLK 116 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHH
Confidence 677888889999999999999999887 444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=4e-06 Score=83.86 Aligned_cols=108 Identities=5% Similarity=-0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+.+.|+.+.|...++..... . | ...+..++..+...|++++|+..+++.. .+.+...++.++..+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY-I--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH-H--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-C--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 33444444555555555555544443321 0 1 1234445555555555555555555543 233344555555555
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...|+..+|...|.+++..+|+.+.++.+|+.+|
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5555555555555555555555555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=8e-06 Score=81.59 Aligned_cols=113 Identities=9% Similarity=-0.017 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESSSLDV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACI 589 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 589 (693)
...+..+...+.+.|+.++|...++....++. .++..+...+...|++++|...|++..+ +.|+. ..|+.|...+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHH
Confidence 34455556666677777777666555443332 3566677788888888888888888888 67754 78888888888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 628 (693)
..|+..+|+..|.+... -.+|-+..+..|...+.+..
T Consensus 198 ~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 88888888888888874 44566777777777776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=3.3e-05 Score=61.94 Aligned_cols=112 Identities=11% Similarity=-0.036 Sum_probs=69.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE----------GNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
|-+.+.+++|+..|+...+ +.|+ ...+..+..+|... +.+++|+..++++.+ --+.+...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHH
Confidence 4455667888888888877 5664 45666666666543 344566666666663 1223455566666
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 622 KLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
.+|...|+.. ++... ..+.+++|...++++++++|+++.+...|+..
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 6655544321 11111 11246789999999999999998888777643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.58 E-value=0.00023 Score=58.66 Aligned_cols=96 Identities=6% Similarity=-0.106 Sum_probs=59.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.|..+..+|.+.|++++|+..++.+.. -.+.+...|..++.+|...|++++|+..|+++. .+.+......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 355566677778888888888887774 234556777777778888888888888877764 3444445444444433
Q ss_pred hcCCc-cHHHHHHHHHhhcCC
Q 043637 658 KNGYA-TLGEWAARRLNELNP 677 (693)
Q Consensus 658 ~~g~~-~~A~~~~~~~~~~~p 677 (693)
..+.. +.....++++++.-+
T Consensus 144 ~~~~~~e~~kk~~~~~f~~~~ 164 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFKKFA 164 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhhhh
Confidence 33322 334555555555433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.58 E-value=0.00065 Score=54.76 Aligned_cols=60 Identities=5% Similarity=-0.019 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+|..+..+|.+.|++++|++.++.+.+ -.+.+...|..++.+|...|++++|+..|++..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 455566677777777777777777764 234456777777777777777777777777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.53 E-value=0.00036 Score=57.55 Aligned_cols=62 Identities=8% Similarity=-0.128 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...|..+..++.+.|++++|+..+++.++ +.|+ ...|..+..++...|++++|+..|+++.+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455566666666666666666666666 4453 35566666666666666666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.50 E-value=0.00026 Score=57.51 Aligned_cols=97 Identities=7% Similarity=-0.117 Sum_probs=54.9
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-H
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQ----------LEHYECMIKLYCRYGYMKELEDFVNRMP--------FNPT-V 646 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~ 646 (693)
..+...|++++|++.|++..+-..-.|+ ...|..+..+|.+.|++++|+..+++.. ..++ .
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444555566666666555542222221 2345556666666666666666555432 1111 1
Q ss_pred ----HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 647 ----PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 647 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
..+..++.+|...|++++|...+++++++.|+..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 134556777777888888888888888876655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.00061 Score=56.41 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHY 617 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 617 (693)
...+..+...+...|++++|+..++++.+ +.| +...|..++.+|...|+.++|++.|+++.. ..|+.|...+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 34677788899999999999999999999 677 568899999999999999999999998743 36999987753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.00066 Score=56.18 Aligned_cols=125 Identities=9% Similarity=-0.037 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCCh
Q 043637 45 YAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFP 124 (693)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (693)
...........|++++|.+.|...+....-+ ... .....+-+...-..+.......+..+..++...|++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l~---------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLD---------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTG---------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-ccc---------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 3344467788999999999999998763211 000 000001111111111222345678888999999999
Q ss_pred hhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHH-----HhCCCCchhh
Q 043637 125 GRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIV-----KRGFCGNVIL 180 (693)
Q Consensus 125 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~ 180 (693)
++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+.+. +.|+.|...+
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999998864 6678899999999999999999999998874 4688887655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.06 E-value=0.00077 Score=59.75 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=34.5
Q ss_pred hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 043637 455 RRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNC 507 (693)
Q Consensus 455 ~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 507 (693)
+.|++++|+..+++..+..+.+...+..+...++..|++++|...++...+..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45666666666666666656666666666666666666666666666666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.88 E-value=0.0015 Score=51.90 Aligned_cols=31 Identities=3% Similarity=-0.246 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAAC 487 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~ 487 (693)
+.+++|.+.|+......+.+...+..+..++
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l 41 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVL 41 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3344444444444333333334444333333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.87 E-value=0.0021 Score=51.80 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=68.3
Q ss_pred HHHHH--HHHHHhCCChHHHHHHHHHHHHCCCCCC-------------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-
Q 043637 545 ICNSM--ILGFCHNERGREALEVFGLMKKEGIKPD-------------HITFHGILLACIHEGNVKLALQFFDSMRCKY- 608 (693)
Q Consensus 545 ~~~~l--~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 608 (693)
+|..+ ...+...|++++|++.|++.++ +.|+ ..+|+.+..+|...|++++|...+++...-.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 34444 4455677888888888888876 2221 2567788899999999999999998886411
Q ss_pred ---CCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 609 ---GIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 609 ---~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...++ ...+..+..+|.+.|++++|+..|++..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2246778899999999999999998763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0096 Score=42.77 Aligned_cols=58 Identities=9% Similarity=-0.060 Sum_probs=25.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-----CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEG-----IKPD-HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.+...+.+.|++++|...|++..+.. ..++ ..++..+..++.+.|++++|+..++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 34444445555555555554443310 0111 1334444444555555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.032 Score=41.36 Aligned_cols=74 Identities=8% Similarity=-0.129 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCC-CH-HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 612 PQLEHYECMIKLYCRYGY---MKELEDFVNRMP-FNP-TV-PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 612 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
|+..+-...+.++.++.+ .++++.+|++.. ..| +. ..+-.+.-+|.+.|++++|...++++++++|+|..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 444555556666665543 346666666653 122 22 344556777788888888888888888888887766443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.30 E-value=0.21 Score=36.39 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=28.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++.+++.++.+
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444555555555555554442 244455555555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.03 E-value=0.15 Score=38.91 Aligned_cols=111 Identities=5% Similarity=-0.089 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 043637 558 RGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKEL 633 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 633 (693)
|+++|++.|++..+.|. ......|. .....+.++|.+.+++..+ .| ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 67888888888888762 22233332 3445678888888888875 34 44555566666654 4567889
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCC
Q 043637 634 EDFVNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNP 677 (693)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 677 (693)
.++|++.....++.....+...|.. ..|.++|...++++-++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999888767777777777777765 3578899999998877654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.69 E-value=0.51 Score=34.36 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=88.1
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHHcCChHH
Q 043637 351 YTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN-DYSSNIFVSNALLDMYRKCGNLRS 429 (693)
Q Consensus 351 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 429 (693)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. .+.|- .-...++.++...+...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~s- 86 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLN- 86 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCC-
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcchH-
Confidence 44567777777777766553 23344555554444444444444444443221 11110 01223445555444422
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 043637 430 ARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE 509 (693)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 509 (693)
...+.-+..+.++|+-+...++++.+.+.+.|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 87 --------------e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 --------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 233445677888999999999999987777999999999999999999999999999999888875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=2 Score=40.55 Aligned_cols=414 Identities=7% Similarity=-0.049 Sum_probs=216.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCC-chHHHHHHHHHHHHcC
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEG-DDVVLGSLTEMYVKCG 293 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g 293 (693)
.+.-..+.|+...+.++...+... | ...|...-..-...++. ...++...+.+..-.| .......-+..+.+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 345567788888888888777432 3 23344333222222222 1223434444432222 2222334456677788
Q ss_pred ChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043637 294 RLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD 373 (693)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 373 (693)
+++.....+...+ .+...-.....+....|+.+.|...+..+-.. ..-..+....+|..+.+.| .
T Consensus 87 ~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~-~ 151 (450)
T d1qsaa1 87 DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASG-K 151 (450)
T ss_dssp CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTT-C
T ss_pred CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcC-C
Confidence 8877666664322 23333445566666777777766555433110 0011222233444444332 2
Q ss_pred CCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHH
Q 043637 374 IDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN-IFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTG 452 (693)
Q Consensus 374 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 452 (693)
++...+..-+......|+...+..+...+ +++ .......+.... +...+.... .... .+......+..+
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~-~~~~-~~~~~~~~~~~~ 221 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFA-RTTG-ATDFTRQMAAVA 221 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHH-HHSC-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHH-hcCC-CChhhhHHHHHH
Confidence 23333333344444556666666654432 222 223333333332 222221222 1111 122222222233
Q ss_pred HHh--cCChHHHHHHHHHhhhCCCCCHHHHH----HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 453 YAR--RGQSEEAMTSFSEMQWETRPSKFTFE----TLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 453 ~~~--~~~~~~a~~~~~~~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
+.+ ..+.+.+...+.........+..... .+.......+..+.+...+......+.. .......+......+
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS--TSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHT
T ss_pred HHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc--hHHHHHHHHHHHHcC
Confidence 322 35778888888887665522322222 2223344556677787777776655433 333444555566778
Q ss_pred CHHHHHHHHhcCCC-CC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHHH
Q 043637 527 CLEYAIRVFKESSS-LD--VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN-VKLALQFFD 602 (693)
Q Consensus 527 ~~~~A~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 602 (693)
++..+...+..+.. +. ..-.-=+..++...|+.+.|...|..... .++ |..++.+- +.|. +.-.
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-~Lg~~~~~~----- 367 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-RIGEEYELK----- 367 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-HTTCCCCCC-----
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHH-HcCCCCCCC-----
Confidence 99999999998872 21 11112246788899999999999998765 243 44443222 1121 1000
Q ss_pred HhHHhcCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 603 SMRCKYGIIPQLE----HYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 603 ~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.......+... .-...+..+...|...+|...|..+....++.....+.....+.|.++.|+.+..+...
T Consensus 368 --~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 368 --IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp --CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred --cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 00000000100 01134577889999999999888776566777777888888899999999998887744
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.08 E-value=0.69 Score=34.95 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRC 606 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 606 (693)
.+.++|.++|++..+.| ++.....|...|.. ..+.++|.+++++..+
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 45677777777777755 23333444444433 3567777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.16 E-value=1.2 Score=30.64 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
.=++.+-+..+....+-|++....+.+++|.+.+++..|.++++-++.+ ..++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 3355666777777778899999999999999999999999999988764 3344556666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.07 E-value=2 Score=31.40 Aligned_cols=64 Identities=8% Similarity=0.062 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHhcc---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 576 PDHITFHGILLACIHE---GNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 576 p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
|...|-....+++.++ .+.++++.+++++.. +.+.+ ...+..|.-+|.+.|++++|+..++++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555566544 345567777777764 22223 2455566677777777777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.06 E-value=2.1 Score=29.38 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=36.7
Q ss_pred hhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 26 LTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
+.+.+..+...+..|++....+.|++|.|.+++..|.++++.++..- .++...|..+++
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 44445555566777777777777777777777777777777666432 123445555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=16 Score=33.86 Aligned_cols=353 Identities=7% Similarity=-0.077 Sum_probs=172.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHhHHHHHHHhcCCCCc
Q 043637 182 SSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRED-IRPLNFTFANALFACSFLSSP 260 (693)
Q Consensus 182 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~ 260 (693)
...+..+.+.++++.....+...+ .+...-.....+....|+.+.|...+...-..| ..|
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p------------------ 136 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP------------------ 136 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC------------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------------------
Confidence 334555667777777665553321 233333455667777888888887777665443 222
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 043637 261 YEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERN 340 (693)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 340 (693)
+....++..+.+.|. .+...+-.-+......|+...|..+...+...........+....+...... ...... .+
T Consensus 137 ~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~~~~~~-~~ 211 (450)
T d1qsaa1 137 NACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---FARTTG-AT 211 (450)
T ss_dssp THHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---HHHHSC-CC
T ss_pred hHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---HHhcCC-CC
Confidence 222334444444433 3444444555666777888888888877665544444444444333222222 222221 12
Q ss_pred cccHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHhhH--H-HHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHH
Q 043637 341 VISWNAMLAGYTR--SLLWKEALDFVFLMRKTTKDIDQVTL--G-LILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSN 415 (693)
Q Consensus 341 ~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~--~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (693)
......+..++.+ ..+.+.+...+............... . .+.......+..+.+..........+
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--------- 282 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--------- 282 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---------
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc---------
Confidence 2222222222222 24566666666665543221111110 0 01111112222333333332222211
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
.+.....-.+......+++..+...+..|............-+.+++...|+.+.
T Consensus 283 -------------------------~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~ 337 (450)
T d1qsaa1 283 -------------------------QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAE 337 (450)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhh
Confidence 1111112223333445566666666666543333333444555666666677666
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHH-hcCC-CCC-HH---HHHHHHHHHHhCCChHHHHHHHHHH
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVF-KESS-SLD-VI---ICNSMILGFCHNERGREALEVFGLM 569 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~-~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~m 569 (693)
|...|..+... ++ .|..|...- .|..- .+- .... .+. .. .-..-+..+...|....|...|..+
T Consensus 338 A~~~~~~~a~~---~~--fYG~LAa~~--Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 338 AKEILHQLMQQ---RG--FYPMVAAQR--IGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHHHHHTS---CS--HHHHHHHHH--TTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CC--hHHHHHHHH--cCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 66666665431 12 333332111 11000 000 0000 000 00 1113456678889999999999888
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 570 KKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 570 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
... . +......+.....+.|.++.|+.......
T Consensus 408 ~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 408 VKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 763 2 45566677788899999999998887664
|